AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0028410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028410 MtrunA17_Chr1g0184951 97.406 347 9 0 1 347 1 347 0.0 704
Msa0028410 MtrunA17_Chr1g0188121 76.286 350 70 3 1 347 1 340 0.0 520
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028410 AT3G63410.1 78.797 349 61 5 1 347 1 338 0.0 516

Find 94 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACTCCACGATACCATTT+TGG 0.111746 1_1:+53298852 None:intergenic
AACCAAACCCATTTCCATTT+TGG 0.136694 1_1:+53300171 None:intergenic
TCGATATACTCTTCTTCTTT+AGG 0.193738 1_1:+53298924 None:intergenic
CAAGAATCAATGCTAAAATT+AGG 0.196925 1_1:-53300103 Msa0028410:CDS
TCGCCGTCATGGCTTGATTA+TGG 0.203458 1_1:-53298832 Msa0028410:CDS
GTTTACGAAGGCAGGGTTTA+AGG 0.206012 1_1:-53298898 Msa0028410:CDS
CGATATACTCTTCTTCTTTA+GGG 0.222755 1_1:+53298925 None:intergenic
CTCTCAGATTGGCTGATCTT+TGG 0.227283 1_1:+53297333 None:intergenic
TACAATGTTTCTCTTCAAAT+TGG 0.240007 1_1:+53300076 None:intergenic
GTCCTGTCTACCCGACATTT+TGG 0.244718 1_1:-53298983 Msa0028410:CDS
TTGAATTGCAAAACCCAAAA+TGG 0.251263 1_1:-53300185 Msa0028410:CDS
CGCCGTCATGGCTTGATTAT+GGG 0.259408 1_1:-53298831 Msa0028410:CDS
ATCTGGGGATTCTCCTTTGC+AGG 0.267355 1_1:-53298781 Msa0028410:intron
CGCGTTTCTTCGCAGATGTT+TGG 0.268470 1_1:-53298956 Msa0028410:CDS
TTAAGGATGTCCAGCTAAAA+AGG 0.270534 1_1:-53298881 Msa0028410:CDS
ACAAGTGGACTTATAAAATA+AGG 0.279635 1_1:+53297102 None:intergenic
TCTCAGATTGGCTGATCTTT+GGG 0.280706 1_1:+53297334 None:intergenic
AAGAAGACAAAGGGATTTAC+AGG 0.286308 1_1:+53297439 None:intergenic
TTCTTACTGCGCTTTGCCTT+GGG 0.316900 1_1:-53297421 Msa0028410:CDS
TCTTTGAGCCACATGTAAAT+AGG 0.317118 1_1:+53297367 None:intergenic
CTTCTTACTGCGCTTTGCCT+TGG 0.324170 1_1:-53297422 Msa0028410:CDS
AAGAATCAATGCTAAAATTA+GGG 0.329851 1_1:-53300102 Msa0028410:CDS
TGTTTCTCAGCATTGAATAC+TGG 0.338472 1_1:-53299076 Msa0028410:intron
TGCAAAACCCAAAATGGAAA+TGG 0.342940 1_1:-53300179 Msa0028410:CDS
GTTGATGTTGGTGGTGGTAC+TGG 0.349346 1_1:-53299855 Msa0028410:CDS
ACTGGTGTTAAGCCTGCATC+TGG 0.356332 1_1:-53298798 Msa0028410:CDS
ACCCAAAATGGAAATGGGTT+TGG 0.363731 1_1:-53300173 Msa0028410:CDS
CCAATCTGAGAGAGATTTGT+AGG 0.373317 1_1:-53297322 Msa0028410:exon
TTGATGCCACGCTGTGGATC+TGG 0.384823 1_1:+53299053 None:intergenic
GGTACTGGTTTCACTACATT+GGG 0.400200 1_1:-53299840 Msa0028410:CDS
ATAAACCTGGGTTGTGAACT+TGG 0.409316 1_1:+53300020 None:intergenic
AAGGATTGTAAAATTGTTGA+AGG 0.409383 1_1:-53299729 Msa0028410:CDS
AAAGCAAAAGGAACCACTTA+AGG 0.411490 1_1:-53299748 Msa0028410:CDS
ATGTTATAAACCCCGGTCAT+TGG 0.420569 1_1:-53299941 Msa0028410:CDS
AATATGCTTGTTGTTGATGT+TGG 0.423767 1_1:-53299867 Msa0028410:CDS
ATCGAGTGGTTTACGAAGGC+AGG 0.431658 1_1:-53298906 Msa0028410:CDS
ATTATGGGTTGTTCTGTGAC+TGG 0.435412 1_1:-53298816 Msa0028410:CDS
GCAAAACCCAAAATGGAAAT+GGG 0.445634 1_1:-53300178 Msa0028410:CDS
ATGCTTGTTGTTGATGTTGG+TGG 0.461058 1_1:-53299864 Msa0028410:CDS
GGAAATGGGTTTGGTTTCAC+AGG 0.462226 1_1:-53300164 Msa0028410:CDS
AACCAAAATGTCGGGTAGAC+AGG 0.473847 1_1:+53298981 None:intergenic
TGGGCGTCCTAGCAGCTTCG+TGG 0.475392 1_1:-53297402 Msa0028410:CDS
TTCCTATCAGTAAGTTCAGC+TGG 0.478104 1_1:+53299888 None:intergenic
TGGTACTGGTTTCACTACAT+TGG 0.488035 1_1:-53299841 Msa0028410:CDS
CATATCTTCAGTCCAATGAC+CGG 0.490893 1_1:+53299929 None:intergenic
AGGATTGTAAAATTGTTGAA+GGG 0.496213 1_1:-53299728 Msa0028410:CDS
GTGGCATCAAGGAAGCATAC+AGG 0.498940 1_1:-53299040 Msa0028410:CDS
TTCACAGGTTCAGATTTCAA+TGG 0.502460 1_1:-53300149 Msa0028410:CDS
CCTACAAATCTCTCTCAGAT+TGG 0.504843 1_1:+53297322 None:intergenic
CTTGTTGTTGATGTTGGTGG+TGG 0.511570 1_1:-53299861 Msa0028410:CDS
AACCAGCTGAACTTACTGAT+AGG 0.522090 1_1:-53299890 Msa0028410:CDS
TTTGCTGCAGCTTGGTCCAA+AGG 0.523778 1_1:-53297479 Msa0028410:intron
CTGGTGTTAAGCCTGCATCT+GGG 0.528996 1_1:-53298797 Msa0028410:CDS
AACGCGACAACCAAAATGTC+GGG 0.531908 1_1:+53298973 None:intergenic
GCTTGCTAAAGCAAAGCAAA+AGG 0.534201 1_1:-53299760 Msa0028410:CDS
TATTGATTCCTATTTACATG+TGG 0.537530 1_1:-53297375 Msa0028410:CDS
AAAGGAGAATCCCCAGATGC+AGG 0.539061 1_1:+53298786 None:intergenic
AGATCCACAGCGTGGCATCA+AGG 0.554562 1_1:-53299051 Msa0028410:CDS
TATCGTGGAGTTCGCCGTCA+TGG 0.558525 1_1:-53298843 Msa0028410:CDS
GGATTGTAAAATTGTTGAAG+GGG 0.558559 1_1:-53299727 Msa0028410:CDS
AAGCGCAGTAAGAAGACAAA+GGG 0.559888 1_1:+53297430 None:intergenic
ATATCTTCAGTCCAATGACC+GGG 0.562624 1_1:+53299930 None:intergenic
TGGTGTTAAGCCTGCATCTG+GGG 0.564309 1_1:-53298796 Msa0028410:CDS
ATACAAACCACGAAGCTGCT+AGG 0.565899 1_1:+53297395 None:intergenic
AAGATGACAAATACCTGCAA+AGG 0.577073 1_1:+53298768 None:intergenic
GCTGATAGATATGTGTCCGC+TGG 0.579059 1_1:-53299672 Msa0028410:CDS
TCAGCATAATCAGTTCGAAA+GGG 0.581535 1_1:+53299690 None:intergenic
ATCAGCATAATCAGTTCGAA+AGG 0.586784 1_1:+53299689 None:intergenic
TCGAGTGGTTTACGAAGGCA+GGG 0.588098 1_1:-53298905 Msa0028410:CDS
GAATTGAGGTTACCGAGTAG+TGG 0.589175 1_1:+53300371 None:intergenic
CAAGACCAAGTTCACAACCC+AGG 0.594018 1_1:-53300025 Msa0028410:CDS
TTTGCTTTAGCAAGCTGATG+AGG 0.594550 1_1:+53299768 None:intergenic
ATAGATATGTGTCCGCTGGA+AGG 0.594629 1_1:-53299668 Msa0028410:intron
TGGCATCAAGGAAGCATACA+GGG 0.598551 1_1:-53299039 Msa0028410:CDS
AAAGCGCAGTAAGAAGACAA+AGG 0.601046 1_1:+53297429 None:intergenic
CGAAGCTGCTAGGACGCCCA+AGG 0.601692 1_1:+53297405 None:intergenic
AACCCATAATCAAGCCATGA+CGG 0.615385 1_1:+53298829 None:intergenic
AAACGCGACAACCAAAATGT+CGG 0.616259 1_1:+53298972 None:intergenic
TTTAGAGGAGGTCCTTACGA+AGG 0.619192 1_1:+53300621 None:intergenic
GTGTAAGATTATTACATATG+CGG 0.628265 1_1:-53297250 Msa0028410:three_prime_UTR
AATGACCGGGGTTTATAACA+TGG 0.636109 1_1:+53299943 None:intergenic
GCAGAAGATTGAAACGAAGG+TGG 0.638476 1_1:+53300428 None:intergenic
GCTTCCTTGATGCCACGCTG+TGG 0.644008 1_1:+53299047 None:intergenic
ACTCTCTCTCTACCACTACT+CGG 0.650592 1_1:-53300383 Msa0028410:intron
GTAGTGGTAGAGAGAGAGTG+AGG 0.655128 1_1:+53300387 None:intergenic
TATGACCATGTTATAAACCC+CGG 0.661674 1_1:-53299948 Msa0028410:CDS
ATTGGCCCAAAATGGTATCG+TGG 0.672762 1_1:-53298858 Msa0028410:CDS
GTAGCAGAAGATTGAAACGA+AGG 0.677715 1_1:+53300425 None:intergenic
GTATATCGAGTGGTTTACGA+AGG 0.686187 1_1:-53298910 Msa0028410:CDS
ATGGCTTCACTAATGCTCAG+TGG 0.694171 1_1:-53300227 Msa0028410:CDS
TATCTTCAGTCCAATGACCG+GGG 0.696574 1_1:+53299931 None:intergenic
AAGAAGAAGAGTATATCGAG+TGG 0.708626 1_1:-53298920 Msa0028410:CDS
GACATCGATATACCTTCCAG+CGG 0.718494 1_1:+53299656 None:intergenic
TACTGGCCAGATCCACAGCG+TGG 0.734186 1_1:-53299059 Msa0028410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAAAAACAATGT+CGG + chr1_1:53297176-53297195 None:intergenic 10.0%
!!! CTTAGTTTTTTTTTTTTTTT+TGG - chr1_1:53298483-53298502 Msa0028410:intron 10.0%
!!! TTTAATTTTATTTTCAATTG+CGG - chr1_1:53299922-53299941 Msa0028410:CDS 10.0%
!!! TATTTTATCAAATTTCATAA+TGG - chr1_1:53300542-53300561 Msa0028410:five_prime_UTR 10.0%
!! ATAAAATTAAAAAACATACC+TGG + chr1_1:53299913-53299932 None:intergenic 15.0%
!!! TTAATTTTATTTTCAATTGC+GGG - chr1_1:53299923-53299942 Msa0028410:CDS 15.0%
!!! TGAATTTTTCACATTAGAAT+GGG + chr1_1:53297472-53297491 None:intergenic 20.0%
!!! GATTTTGTAGATTAATTCAA+TGG - chr1_1:53297515-53297534 Msa0028410:intron 20.0%
!! AAGAATCAATGCTAAAATTA+GGG - chr1_1:53297659-53297678 Msa0028410:intron 20.0%
!! AACCATGCATAATTATTTAA+AGG + chr1_1:53298162-53298181 None:intergenic 20.0%
!! CTATAACAAGAGAAAAATAA+AGG + chr1_1:53298383-53298402 None:intergenic 20.0%
!! TTTGATTAAGCATAAAAGAA+GGG + chr1_1:53299049-53299068 None:intergenic 20.0%
!! ATTTGATTAAGCATAAAAGA+AGG + chr1_1:53299050-53299069 None:intergenic 20.0%
!! TTTATGCTTAATCAAATCAA+AGG - chr1_1:53299053-53299072 Msa0028410:CDS 20.0%
!! GAATAATAGATAGAAAAAAG+AGG + chr1_1:53299390-53299409 None:intergenic 20.0%
!!! ATTTTTACATGAAATGACTA+TGG - chr1_1:53299525-53299544 Msa0028410:intron 20.0%
!! AAGTTTAACCATATTAAATG+TGG - chr1_1:53299666-53299685 Msa0028410:intron 20.0%
!! ATCATGTTTGATATTTAAGT+TGG - chr1_1:53299706-53299725 Msa0028410:CDS 20.0%
!! TGATTTATTATTGTTAAGTG+TGG - chr1_1:53299807-53299826 Msa0028410:CDS 20.0%
!!! GAATATAGAGATTTTGATTT+AGG + chr1_1:53300098-53300117 None:intergenic 20.0%
!!! AAGGTTTTTTTTGTTGTTGA+AGG + chr1_1:53297124-53297143 None:intergenic 25.0%
!!! AAAATCAAGTTTTGAGTATG+TGG - chr1_1:53297241-53297260 Msa0028410:three_prime_UTR 25.0%
!!! AAAAGTGAATTTGAGTTGAA+AGG + chr1_1:53297434-53297453 None:intergenic 25.0%
!! GTGAATTTTTCACATTAGAA+TGG + chr1_1:53297473-53297492 None:intergenic 25.0%
!!! TAGCATTGATTCTTGTTTTT+GGG + chr1_1:53297653-53297672 None:intergenic 25.0%
!!! TTAGCATTGATTCTTGTTTT+TGG + chr1_1:53297654-53297673 None:intergenic 25.0%
! CAAGAATCAATGCTAAAATT+AGG - chr1_1:53297658-53297677 Msa0028410:intron 25.0%
! TACAATGTTTCTCTTCAAAT+TGG + chr1_1:53297688-53297707 None:intergenic 25.0%
!! TTTTTGTGTTGTATAAACCT+GGG + chr1_1:53297756-53297775 None:intergenic 25.0%
!!! TTTTTTGTGTTGTATAAACC+TGG + chr1_1:53297757-53297776 None:intergenic 25.0%
!!! AACACAAAAAAGAAGCATTT+TGG - chr1_1:53297766-53297785 Msa0028410:intron 25.0%
!!! AAGAAGCATTTTGGTTTTAT+AGG - chr1_1:53297775-53297794 Msa0028410:intron 25.0%
!! ACAATTTTACAATCCTTAAG+TGG + chr1_1:53298029-53298048 None:intergenic 25.0%
! AAGGATTGTAAAATTGTTGA+AGG - chr1_1:53298032-53298051 Msa0028410:intron 25.0%
! AGGATTGTAAAATTGTTGAA+GGG - chr1_1:53298033-53298052 Msa0028410:intron 25.0%
! AAGTGTACATAGATATAAAG+TGG - chr1_1:53298547-53298566 Msa0028410:intron 25.0%
!! AATCAAAGGTATGTTGTATA+AGG - chr1_1:53299067-53299086 Msa0028410:CDS 25.0%
! CATAAACACTATATGCTTTA+CGG - chr1_1:53299170-53299189 Msa0028410:intron 25.0%
! GAAAAAAGAGGTAAACTTAA+AGG + chr1_1:53299378-53299397 None:intergenic 25.0%
! TCAGTAAGCATATAGATATA+GGG + chr1_1:53299506-53299525 None:intergenic 25.0%
! ATCAGTAAGCATATAGATAT+AGG + chr1_1:53299507-53299526 None:intergenic 25.0%
!!! ATGTTTGATATTTAAGTTGG+AGG - chr1_1:53299709-53299728 Msa0028410:CDS 25.0%
!! AGTTGATATCAATGTAGATA+TGG - chr1_1:53299885-53299904 Msa0028410:CDS 25.0%
! GTTGATATCAATGTAGATAT+GGG - chr1_1:53299886-53299905 Msa0028410:CDS 25.0%
!!! TATTGATTCCTATTTACATG+TGG - chr1_1:53300386-53300405 Msa0028410:five_prime_UTR 25.0%
! AAAACGTTGAAAAAAAGACA+CGG + chr1_1:53300486-53300505 None:intergenic 25.0%
! GTGTAAGATTATTACATATG+CGG - chr1_1:53300511-53300530 Msa0028410:five_prime_UTR 25.0%
CAACAAAAAAAACCTTCGTA+AGG - chr1_1:53297128-53297147 Msa0028410:three_prime_UTR 30.0%
!! GAATTTGAGTTGAAAGGAAT+GGG + chr1_1:53297428-53297447 None:intergenic 30.0%
!! TGAATTTGAGTTGAAAGGAA+TGG + chr1_1:53297429-53297448 None:intergenic 30.0%
TTGAATTGCAAAACCCAAAA+TGG - chr1_1:53297576-53297595 Msa0028410:intron 30.0%
!!! AGCATTGATTCTTGTTTTTG+GGG + chr1_1:53297652-53297671 None:intergenic 30.0%
!! AATATGCTTGTTGTTGATGT+TGG - chr1_1:53297894-53297913 Msa0028410:intron 30.0%
GGATTGTAAAATTGTTGAAG+GGG - chr1_1:53298034-53298053 Msa0028410:intron 30.0%
CGCCTTTAAATAATTATGCA+TGG - chr1_1:53298157-53298176 Msa0028410:intron 30.0%
TCAAATAAGCCAATCCAAAT+AGG + chr1_1:53298242-53298261 None:intergenic 30.0%
! TGTTTTCGTATAAGCTATCT+TGG + chr1_1:53298355-53298374 None:intergenic 30.0%
!! AAAGTAGATTGCTTTGAAAG+AGG - chr1_1:53298643-53298662 Msa0028410:intron 30.0%
!!! CATACAGGGTTTTGAAATTT+GGG - chr1_1:53298736-53298755 Msa0028410:intron 30.0%
!!! ATACAGGGTTTTGAAATTTG+GGG - chr1_1:53298737-53298756 Msa0028410:intron 30.0%
CGATATACTCTTCTTCTTTA+GGG + chr1_1:53298839-53298858 None:intergenic 30.0%
TCGATATACTCTTCTTCTTT+AGG + chr1_1:53298840-53298859 None:intergenic 30.0%
!! TATAAGGTTGTTTCTCCTTA+TGG - chr1_1:53299083-53299102 Msa0028410:intron 30.0%
CGTAAAGCATATAGTGTTTA+TGG + chr1_1:53299172-53299191 None:intergenic 30.0%
TTGAAATAGTCATCAGTTGA+GGG + chr1_1:53299223-53299242 None:intergenic 30.0%
! TTTGAAATAGTCATCAGTTG+AGG + chr1_1:53299224-53299243 None:intergenic 30.0%
!!! TGTAAATCCCCTTTTTTATC+CGG - chr1_1:53299320-53299339 Msa0028410:intron 30.0%
AAGAGGTAAACTTAAAGGAT+GGG + chr1_1:53299373-53299392 None:intergenic 30.0%
AAAGAGGTAAACTTAAAGGA+TGG + chr1_1:53299374-53299393 None:intergenic 30.0%
CCAACAAAAAAACATGTACA+GGG + chr1_1:53299458-53299477 None:intergenic 30.0%
TCCAACAAAAAAACATGTAC+AGG + chr1_1:53299459-53299478 None:intergenic 30.0%
GGAAGTTTCCACATTTAATA+TGG + chr1_1:53299677-53299696 None:intergenic 30.0%
ATCAAACATGATCACTTCAA+TGG + chr1_1:53299698-53299717 None:intergenic 30.0%
CATAAGGATTACAATTGGTA+GGG + chr1_1:53299982-53300001 None:intergenic 30.0%
ACATAAGGATTACAATTGGT+AGG + chr1_1:53299983-53300002 None:intergenic 30.0%
CAAGACATAAGGATTACAAT+TGG + chr1_1:53299987-53300006 None:intergenic 30.0%
CAATTGTAATCCTTATGTCT+TGG - chr1_1:53299985-53300004 Msa0028410:CDS 30.0%
GAGTTATGAACAAAACACTA+CGG - chr1_1:53300024-53300043 Msa0028410:CDS 30.0%
ATTCAGCTTAACAAAGCTAT+AGG - chr1_1:53300114-53300133 Msa0028410:CDS 30.0%
TAACAAAGCTATAGGATTTG+AGG - chr1_1:53300122-53300141 Msa0028410:CDS 30.0%
! TTTTCAACATCTTCTTCCTT+TGG + chr1_1:53300301-53300320 None:intergenic 30.0%
! TTTTTCTGCAAGCTTTTTAC+AGG - chr1_1:53300600-53300619 Msa0028410:five_prime_UTR 30.0%
!!! GGTTTTATTAGACATTTCCA+GGG + chr1_1:53300641-53300660 None:intergenic 30.0%
!!! AGGTTTTATTAGACATTTCC+AGG + chr1_1:53300642-53300661 None:intergenic 30.0%
! GGACCTCCTCTAAAAAAAAT+TGG - chr1_1:53297149-53297168 Msa0028410:three_prime_UTR 35.0%
!!! GGTCCAATTTTTTTTAGAGG+AGG + chr1_1:53297155-53297174 None:intergenic 35.0%
!!! GTCGGTCCAATTTTTTTTAG+AGG + chr1_1:53297158-53297177 None:intergenic 35.0%
GGAAATTTAGCAGAGAATTG+AGG + chr1_1:53297407-53297426 None:intergenic 35.0%
TGCAAAACCCAAAATGGAAA+TGG - chr1_1:53297582-53297601 Msa0028410:intron 35.0%
GCAAAACCCAAAATGGAAAT+GGG - chr1_1:53297583-53297602 Msa0028410:intron 35.0%
! ACCAAACCCATTTCCATTTT+GGG + chr1_1:53297592-53297611 None:intergenic 35.0%
! AACCAAACCCATTTCCATTT+TGG + chr1_1:53297593-53297612 None:intergenic 35.0%
TTCACAGGTTCAGATTTCAA+TGG - chr1_1:53297612-53297631 Msa0028410:intron 35.0%
TATGACCATGTTATAAACCC+CGG - chr1_1:53297813-53297832 Msa0028410:intron 35.0%
AAAGCAAAAGGAACCACTTA+AGG - chr1_1:53298013-53298032 Msa0028410:intron 35.0%
TCAGCATAATCAGTTCGAAA+GGG + chr1_1:53298074-53298093 None:intergenic 35.0%
ATCAGCATAATCAGTTCGAA+AGG + chr1_1:53298075-53298094 None:intergenic 35.0%
! TGTTCTTCTTGATGACTGTT+AGG - chr1_1:53298215-53298234 Msa0028410:intron 35.0%
! GTTCTTCTTGATGACTGTTA+GGG - chr1_1:53298216-53298235 Msa0028410:intron 35.0%
GCTTATTTGAGCTCATTTAC+TGG - chr1_1:53298252-53298271 Msa0028410:intron 35.0%
AAAAAAACTAAGCCACTGCT+TGG + chr1_1:53298475-53298494 None:intergenic 35.0%
TGCAAATACACCTCTTTCAA+AGG + chr1_1:53298576-53298595 None:intergenic 35.0%
! TGTTTCTCAGCATTGAATAC+TGG - chr1_1:53298685-53298704 Msa0028410:intron 35.0%
!!! GCATACAGGGTTTTGAAATT+TGG - chr1_1:53298735-53298754 Msa0028410:intron 35.0%
!!! TACAGGGTTTTGAAATTTGG+GGG - chr1_1:53298738-53298757 Msa0028410:intron 35.0%
! AAGAAGAAGAGTATATCGAG+TGG - chr1_1:53298841-53298860 Msa0028410:CDS 35.0%
TTAAGGATGTCCAGCTAAAA+AGG - chr1_1:53298880-53298899 Msa0028410:CDS 35.0%
!! TAAAAAGGATTGGCCCAAAA+TGG - chr1_1:53298895-53298914 Msa0028410:CDS 35.0%
AAGATGACAAATACCTGCAA+AGG + chr1_1:53298996-53299015 None:intergenic 35.0%
TCAGTAAGTCATAACATGGT+AGG + chr1_1:53299149-53299168 None:intergenic 35.0%
ATGGTCAGTAAGTCATAACA+TGG + chr1_1:53299153-53299172 None:intergenic 35.0%
AAACACTATATGCTTTACGG+TGG - chr1_1:53299173-53299192 Msa0028410:intron 35.0%
AACACTATATGCTTTACGGT+GGG - chr1_1:53299174-53299193 Msa0028410:intron 35.0%
GTAGGCACATCTAATCTAAA+AGG + chr1_1:53299267-53299286 None:intergenic 35.0%
GTTCCTAAAATGTTGCAAGT+AGG + chr1_1:53299285-53299304 None:intergenic 35.0%
GTAAACTTAAAGGATGGGAT+AGG + chr1_1:53299368-53299387 None:intergenic 35.0%
!!! CCCTGTACATGTTTTTTTGT+TGG - chr1_1:53299455-53299474 Msa0028410:intron 35.0%
CACACACAGATACTACAAAA+AGG + chr1_1:53299599-53299618 None:intergenic 35.0%
AGTTTAGTACCCAACAAGTA+TGG - chr1_1:53299855-53299874 Msa0028410:CDS 35.0%
GTTTAGTACCCAACAAGTAT+GGG - chr1_1:53299856-53299875 Msa0028410:CDS 35.0%
CTTCAATACCCATACTTGTT+GGG + chr1_1:53299867-53299886 None:intergenic 35.0%
ACTTCAATACCCATACTTGT+TGG + chr1_1:53299868-53299887 None:intergenic 35.0%
!! TTTATTTTCAATTGCGGGCA+TGG - chr1_1:53299928-53299947 Msa0028410:CDS 35.0%
ACTTACACTTCCAAGACATA+AGG + chr1_1:53299998-53300017 None:intergenic 35.0%
CAATAGCCTTCAATGTTAAC+TGG - chr1_1:53300051-53300070 Msa0028410:CDS 35.0%
CACTTATTACTTCCTTGCAT+TGG - chr1_1:53300179-53300198 Msa0028410:CDS 35.0%
AAGAAGACAAAGGGATTTAC+AGG + chr1_1:53300325-53300344 None:intergenic 35.0%
TCTTTGAGCCACATGTAAAT+AGG + chr1_1:53300397-53300416 None:intergenic 35.0%
ATGAAAAACTGATCTCAACG+AGG + chr1_1:53300580-53300599 None:intergenic 35.0%
! GGTCATACTAATTTTATCCC+TGG - chr1_1:53300621-53300640 Msa0028410:five_prime_UTR 35.0%
GTAGCAGAAGATTGAAACGA+AGG + chr1_1:53297339-53297358 None:intergenic 40.0%
! ACCCAAAATGGAAATGGGTT+TGG - chr1_1:53297588-53297607 Msa0028410:intron 40.0%
ATAAACCTGGGTTGTGAACT+TGG + chr1_1:53297744-53297763 None:intergenic 40.0%
AATGACCGGGGTTTATAACA+TGG + chr1_1:53297821-53297840 None:intergenic 40.0%
ATGTTATAAACCCCGGTCAT+TGG - chr1_1:53297820-53297839 Msa0028410:intron 40.0%
ATATCTTCAGTCCAATGACC+GGG + chr1_1:53297834-53297853 None:intergenic 40.0%
CATATCTTCAGTCCAATGAC+CGG + chr1_1:53297835-53297854 None:intergenic 40.0%
AACCAGCTGAACTTACTGAT+AGG - chr1_1:53297871-53297890 Msa0028410:intron 40.0%
TTCCTATCAGTAAGTTCAGC+TGG + chr1_1:53297876-53297895 None:intergenic 40.0%
!! ATGCTTGTTGTTGATGTTGG+TGG - chr1_1:53297897-53297916 Msa0028410:intron 40.0%
!! TGGTACTGGTTTCACTACAT+TGG - chr1_1:53297920-53297939 Msa0028410:intron 40.0%
!! GGTACTGGTTTCACTACATT+GGG - chr1_1:53297921-53297940 Msa0028410:intron 40.0%
TTTGCTTTAGCAAGCTGATG+AGG + chr1_1:53297996-53298015 None:intergenic 40.0%
! GCTTGCTAAAGCAAAGCAAA+AGG - chr1_1:53298001-53298020 Msa0028410:intron 40.0%
! TAAAGGCGTATGAAACAGCA+TGG + chr1_1:53298145-53298164 None:intergenic 40.0%
CAGCTACAAGATTGCAACAA+AGG + chr1_1:53298518-53298537 None:intergenic 40.0%
! AAAGTGGCTTCCTTTGAAAG+AGG - chr1_1:53298563-53298582 Msa0028410:intron 40.0%
AAACGCGACAACCAAAATGT+CGG + chr1_1:53298792-53298811 None:intergenic 40.0%
GTATATCGAGTGGTTTACGA+AGG - chr1_1:53298851-53298870 Msa0028410:CDS 40.0%
GATGTCCAGCTAAAAAGGAT+TGG - chr1_1:53298885-53298904 Msa0028410:CDS 40.0%
! GAACTCCACGATACCATTTT+GGG + chr1_1:53298911-53298930 None:intergenic 40.0%
AACCCATAATCAAGCCATGA+CGG + chr1_1:53298935-53298954 None:intergenic 40.0%
! ATTATGGGTTGTTCTGTGAC+TGG - chr1_1:53298945-53298964 Msa0028410:CDS 40.0%
TGAAAAAACAGACACACACC+AGG + chr1_1:53299112-53299131 None:intergenic 40.0%
!!! GGTGTGTGTCTGTTTTTTCA+AGG - chr1_1:53299112-53299131 Msa0028410:intron 40.0%
GTCATAACATGGTAGGTATC+AGG + chr1_1:53299142-53299161 None:intergenic 40.0%
! GTGCCTACTTGCAACATTTT+AGG - chr1_1:53299279-53299298 Msa0028410:intron 40.0%
AGGTACTCCGGATAAAAAAG+GGG + chr1_1:53299330-53299349 None:intergenic 40.0%
CAGGTACTCCGGATAAAAAA+GGG + chr1_1:53299331-53299350 None:intergenic 40.0%
TCAGGTACTCCGGATAAAAA+AGG + chr1_1:53299332-53299351 None:intergenic 40.0%
ATAGGTTCTCAAATGTGCTC+AGG + chr1_1:53299350-53299369 None:intergenic 40.0%
TTGGAGGAAAACTAGTTCCT+GGG - chr1_1:53299725-53299744 Msa0028410:CDS 40.0%
ATCAATGTAGATATGGGTCC+AGG - chr1_1:53299892-53299911 Msa0028410:CDS 40.0%
! TCTTGGAAGTGTAAGTAGCA+TGG - chr1_1:53300002-53300021 Msa0028410:CDS 40.0%
AAGCGCAGTAAGAAGACAAA+GGG + chr1_1:53300334-53300353 None:intergenic 40.0%
AAAGCGCAGTAAGAAGACAA+AGG + chr1_1:53300335-53300354 None:intergenic 40.0%
! TCTCAGATTGGCTGATCTTT+GGG + chr1_1:53300430-53300449 None:intergenic 40.0%
CCTACAAATCTCTCTCAGAT+TGG + chr1_1:53300442-53300461 None:intergenic 40.0%
CCAATCTGAGAGAGATTTGT+AGG - chr1_1:53300439-53300458 Msa0028410:five_prime_UTR 40.0%
TTTAGAGGAGGTCCTTACGA+AGG + chr1_1:53297143-53297162 None:intergenic 45.0%
GCAGAAGATTGAAACGAAGG+TGG + chr1_1:53297336-53297355 None:intergenic 45.0%
ACTCTCTCTCTACCACTACT+CGG - chr1_1:53297378-53297397 Msa0028410:CDS 45.0%
GAATTGAGGTTACCGAGTAG+TGG + chr1_1:53297393-53297412 None:intergenic 45.0%
ATGGCTTCACTAATGCTCAG+TGG - chr1_1:53297534-53297553 Msa0028410:intron 45.0%
! GGAAATGGGTTTGGTTTCAC+AGG - chr1_1:53297597-53297616 Msa0028410:intron 45.0%
TATCTTCAGTCCAATGACCG+GGG + chr1_1:53297833-53297852 None:intergenic 45.0%
!! CTTGTTGTTGATGTTGGTGG+TGG - chr1_1:53297900-53297919 Msa0028410:intron 45.0%
ATAGATATGTGTCCGCTGGA+AGG - chr1_1:53298093-53298112 Msa0028410:intron 45.0%
GACATCGATATACCTTCCAG+CGG + chr1_1:53298108-53298127 None:intergenic 45.0%
GATGACTGTTAGGGCCTATT+TGG - chr1_1:53298225-53298244 Msa0028410:intron 45.0%
CTGTTAGGGCCTATTTGGAT+TGG - chr1_1:53298230-53298249 Msa0028410:intron 45.0%
TAAGCTGTTTAGCCAAGCAG+TGG - chr1_1:53298460-53298479 Msa0028410:intron 45.0%
! TGGCATCAAGGAAGCATACA+GGG - chr1_1:53298722-53298741 Msa0028410:intron 45.0%
GGGGGCAAAGCATGTTTAAT+TGG - chr1_1:53298756-53298775 Msa0028410:intron 45.0%
AACCAAAATGTCGGGTAGAC+AGG + chr1_1:53298783-53298802 None:intergenic 45.0%
AACGCGACAACCAAAATGTC+GGG + chr1_1:53298791-53298810 None:intergenic 45.0%
GTTTACGAAGGCAGGGTTTA+AGG - chr1_1:53298863-53298882 Msa0028410:CDS 45.0%
!! TTGGGCCAATCCTTTTTAGC+TGG + chr1_1:53298893-53298912 None:intergenic 45.0%
ATTGGCCCAAAATGGTATCG+TGG - chr1_1:53298903-53298922 Msa0028410:CDS 45.0%
! CGAACTCCACGATACCATTT+TGG + chr1_1:53298912-53298931 None:intergenic 45.0%
TGTTTCTCCTTATGGTGTCC+TGG - chr1_1:53299091-53299110 Msa0028410:intron 45.0%
TCAAATGTGCTCAGGTACTC+CGG + chr1_1:53299342-53299361 None:intergenic 45.0%
GTTGGAGGAAAACTAGTTCC+TGG - chr1_1:53299724-53299743 Msa0028410:CDS 45.0%
! CCATTTTCTTTACCATGCCC+AGG + chr1_1:53299745-53299764 None:intergenic 45.0%
CCTGGGCATGGTAAAGAAAA+TGG - chr1_1:53299742-53299761 Msa0028410:CDS 45.0%
GCCTTCAATGTTAACTGGTC+AGG - chr1_1:53300056-53300075 Msa0028410:CDS 45.0%
GCCTGACCAGTTAACATTGA+AGG + chr1_1:53300060-53300079 None:intergenic 45.0%
! ACTGCAGTTTTGCCAATGCA+AGG + chr1_1:53300194-53300213 None:intergenic 45.0%
!! TTCTGCAATTTGCTGCAGCT+TGG - chr1_1:53300274-53300293 Msa0028410:intron 45.0%
TTCTTACTGCGCTTTGCCTT+GGG - chr1_1:53300340-53300359 Msa0028410:intron 45.0%
ATACAAACCACGAAGCTGCT+AGG + chr1_1:53300369-53300388 None:intergenic 45.0%
! CTCTCAGATTGGCTGATCTT+TGG + chr1_1:53300431-53300450 None:intergenic 45.0%
GTAGTGGTAGAGAGAGAGTG+AGG + chr1_1:53297377-53297396 None:intergenic 50.0%
CAAGACCAAGTTCACAACCC+AGG - chr1_1:53297736-53297755 Msa0028410:intron 50.0%
!! GTTGATGTTGGTGGTGGTAC+TGG - chr1_1:53297906-53297925 Msa0028410:intron 50.0%
GCTGATAGATATGTGTCCGC+TGG - chr1_1:53298089-53298108 Msa0028410:intron 50.0%
! GTGGCATCAAGGAAGCATAC+AGG - chr1_1:53298721-53298740 Msa0028410:intron 50.0%
! GTCCTGTCTACCCGACATTT+TGG - chr1_1:53298778-53298797 Msa0028410:intron 50.0%
CGCGTTTCTTCGCAGATGTT+TGG - chr1_1:53298805-53298824 Msa0028410:CDS 50.0%
ATCGAGTGGTTTACGAAGGC+AGG - chr1_1:53298855-53298874 Msa0028410:CDS 50.0%
TCGAGTGGTTTACGAAGGCA+GGG - chr1_1:53298856-53298875 Msa0028410:CDS 50.0%
TCGCCGTCATGGCTTGATTA+TGG - chr1_1:53298929-53298948 Msa0028410:CDS 50.0%
CGCCGTCATGGCTTGATTAT+GGG - chr1_1:53298930-53298949 Msa0028410:CDS 50.0%
! ACTGGTGTTAAGCCTGCATC+TGG - chr1_1:53298963-53298982 Msa0028410:CDS 50.0%
! CTGGTGTTAAGCCTGCATCT+GGG - chr1_1:53298964-53298983 Msa0028410:CDS 50.0%
! TGGTGTTAAGCCTGCATCTG+GGG - chr1_1:53298965-53298984 Msa0028410:CDS 50.0%
AAAGGAGAATCCCCAGATGC+AGG + chr1_1:53298978-53298997 None:intergenic 50.0%
ATCTGGGGATTCTCCTTTGC+AGG - chr1_1:53298980-53298999 Msa0028410:CDS 50.0%
ACACACACCAGGACACCATA+AGG + chr1_1:53299101-53299120 None:intergenic 50.0%
GGAAAACTAGTTCCTGGGCA+TGG - chr1_1:53299730-53299749 Msa0028410:CDS 50.0%
TTTGCTGCAGCTTGGTCCAA+AGG - chr1_1:53300282-53300301 Msa0028410:intron 50.0%
CTTCTTACTGCGCTTTGCCT+TGG - chr1_1:53300339-53300358 Msa0028410:intron 50.0%
TTGATGCCACGCTGTGGATC+TGG + chr1_1:53298711-53298730 None:intergenic 55.0%
AGATCCACAGCGTGGCATCA+AGG - chr1_1:53298710-53298729 Msa0028410:intron 55.0%
TATCGTGGAGTTCGCCGTCA+TGG - chr1_1:53298918-53298937 Msa0028410:CDS 55.0%
TACTGGCCAGATCCACAGCG+TGG - chr1_1:53298702-53298721 Msa0028410:intron 60.0%
GCTTCCTTGATGCCACGCTG+TGG + chr1_1:53298717-53298736 None:intergenic 60.0%
CGAAGCTGCTAGGACGCCCA+AGG + chr1_1:53300359-53300378 None:intergenic 65.0%
TGGGCGTCCTAGCAGCTTCG+TGG - chr1_1:53300359-53300378 Msa0028410:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 53297107 53300676 53297107 ID=Msa0028410;Name=Msa0028410
chr1_1 mRNA 53297107 53300676 53297107 ID=Msa0028410-mRNA-1;Parent=Msa0028410;Name=Msa0028410-mRNA-1;_AED=0.04;_eAED=0.04;_QI=302|1|1|1|0.66|0.5|4|229|347
chr1_1 exon 53297107 53297491 53297107 ID=Msa0028410-mRNA-1:exon:15713;Parent=Msa0028410-mRNA-1
chr1_1 exon 53298782 53299088 53298782 ID=Msa0028410-mRNA-1:exon:15712;Parent=Msa0028410-mRNA-1
chr1_1 exon 53299669 53300258 53299669 ID=Msa0028410-mRNA-1:exon:15711;Parent=Msa0028410-mRNA-1
chr1_1 exon 53300384 53300676 53300384 ID=Msa0028410-mRNA-1:exon:15710;Parent=Msa0028410-mRNA-1
chr1_1 five_prime_UTR 53300384 53300676 53300384 ID=Msa0028410-mRNA-1:five_prime_utr;Parent=Msa0028410-mRNA-1
chr1_1 five_prime_UTR 53300250 53300258 53300250 ID=Msa0028410-mRNA-1:five_prime_utr;Parent=Msa0028410-mRNA-1
chr1_1 CDS 53299669 53300249 53299669 ID=Msa0028410-mRNA-1:cds;Parent=Msa0028410-mRNA-1
chr1_1 CDS 53298782 53299088 53298782 ID=Msa0028410-mRNA-1:cds;Parent=Msa0028410-mRNA-1
chr1_1 CDS 53297336 53297491 53297336 ID=Msa0028410-mRNA-1:cds;Parent=Msa0028410-mRNA-1
chr1_1 three_prime_UTR 53297107 53297335 53297107 ID=Msa0028410-mRNA-1:three_prime_utr;Parent=Msa0028410-mRNA-1
Gene Sequence

>Msa0028410

ATGGCTTCACTAATGCTCAGTGGAACTCAAAAGCTTACATTTTTGAATTGCAAAACCCAAAATGGAAATGGGTTTGGTTTCACAGGTTCAGATTTCAATGGTAAGAGCTTAATTTCCCCAAAAACAAGAATCAATGCTAAAATTAGGGTTTCCAATTTGAAGAGAAACATTGTAGTACGTTCTAGTTCTAGTGTATCATCTTCAAGACCAAGTTCACAACCCAGGTTTATACAACACAAAAAAGAAGCATTTTGGTTTTATAGGTTTCTTTCAATTGTGTATGACCATGTTATAAACCCCGGTCATTGGACTGAAGATATGAGAGATGAAGCTCTTGAACCAGCTGAACTTACTGATAGGAATATGCTTGTTGTTGATGTTGGTGGTGGTACTGGTTTCACTACATTGGGTATTGTTAAGCATGTCGATGCTAAGAATGTAACTATTCTTGATCAGTCACCTCATCAGCTTGCTAAAGCAAAGCAAAAGGAACCACTTAAGGATTGTAAAATTGTTGAAGGGGATGCTGAAGATTTACCCTTTCGAACTGATTATGCTGATAGATATGTGTCCGCTGGAAGCATTGAATACTGGCCAGATCCACAGCGTGGCATCAAGGAAGCATACAGGGTTTTGAAATTTGGGGGCAAAGCATGTTTAATTGGTCCTGTCTACCCGACATTTTGGTTGTCGCGTTTCTTCGCAGATGTTTGGATGCTTTTCCCTAAAGAAGAAGAGTATATCGAGTGGTTTACGAAGGCAGGGTTTAAGGATGTCCAGCTAAAAAGGATTGGCCCAAAATGGTATCGTGGAGTTCGCCGTCATGGCTTGATTATGGGTTGTTCTGTGACTGGTGTTAAGCCTGCATCTGGGGATTCTCCTTTGCAGCTTGGTCCAAAGGAAGAAGATGTTGAAAAGCCTGTAAATCCCTTTGTCTTCTTACTGCGCTTTGCCTTGGGCGTCCTAGCAGCTTCGTGGTTTGTATTGATTCCTATTTACATGTGGCTCAAAGATCAAATTGTTCCCAAAGATCAGCCAATCTGA

Protein sequence

>Msa0028410

MASLMLSGTQKLTFLNCKTQNGNGFGFTGSDFNGKSLISPKTRINAKIRVSNLKRNIVVRSSSSVSSSRPSSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAELTDRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIVEGDAEDLPFRTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKFGGKACLIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDVEKPVNPFVFLLRFALGVLAASWFVLIPIYMWLKDQIVPKDQPI*