AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0398990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398990 MtrunA17_Chr3g0087261 95.890 511 21 0 1 511 1 511 0.0 1015
Msa0398990 MtrunA17_Chr3g0087271 82.422 512 89 1 1 511 1 512 0.0 866
Msa0398990 MtrunA17_Chr6g0482131 56.367 479 203 4 36 509 35 512 0.0 571
Msa0398990 MtrunA17_Chr4g0033311 54.688 512 222 6 7 509 5 515 0.0 565
Msa0398990 MtrunA17_Chr2g0329201 54.871 503 220 5 13 509 6 507 0.0 563
Msa0398990 MtrunA17_Chr4g0033321 54.102 512 227 5 10 514 4 514 0.0 558
Msa0398990 MtrunA17_Chr4g0033401 53.996 513 227 5 10 514 4 515 0.0 555
Msa0398990 MtrunA17_Chr6g0482081 54.617 509 222 5 7 507 4 511 0.0 553
Msa0398990 MtrunA17_Chr3g0088441 54.314 510 224 6 8 509 6 514 0.0 551
Msa0398990 MtrunA17_Chr4g0033201 51.072 513 243 5 4 509 1 512 0.0 551
Msa0398990 MtrunA17_Chr2g0329191 55.252 476 210 3 35 507 32 507 0.0 549
Msa0398990 MtrunA17_Chr4g0033341 54.420 509 221 7 7 509 40 543 0.0 546
Msa0398990 MtrunA17_Chr4g0033271 51.946 514 239 5 1 509 1 511 0.0 544
Msa0398990 MtrunA17_Chr6g0482071 52.941 510 228 6 8 512 14 516 0.0 543
Msa0398990 MtrunA17_Chr4g0033331 54.564 493 218 4 20 507 22 513 0.0 542
Msa0398990 MtrunA17_Chr4g0033191 52.697 482 222 4 33 509 39 519 0.0 540
Msa0398990 MtrunA17_Chr4g0010501 53.361 476 216 2 36 509 23 494 0.0 536
Msa0398990 MtrunA17_Chr2g0329321 50.297 505 219 5 8 509 13 488 4.19e-179 512
Msa0398990 MtrunA17_Chr4g0033261 48.431 510 230 4 8 509 9 493 1.83e-174 500
Msa0398990 MtrunA17_Chr4g0043091 47.610 502 256 4 14 511 7 505 8.84e-174 499
Msa0398990 MtrunA17_Chr6g0482941 49.901 505 246 6 9 511 15 514 4.31e-172 495
Msa0398990 MtrunA17_Chr6g0482951 49.703 505 247 6 9 511 15 514 3.60e-171 493
Msa0398990 MtrunA17_Chr4g0033231 48.441 481 218 3 34 509 38 493 1.78e-168 485
Msa0398990 MtrunA17_Chr5g0430451 48.932 515 226 5 8 509 8 498 1.34e-163 473
Msa0398990 MtrunA17_Chr4g0042171 47.799 477 243 4 36 507 23 498 1.43e-160 466
Msa0398990 MtrunA17_Chr3g0090131 45.380 487 251 6 30 513 14 488 1.08e-155 452
Msa0398990 MtrunA17_Chr4g0074561 46.862 478 243 5 42 511 40 514 2.84e-153 447
Msa0398990 MtrunA17_Chr7g0242691 45.743 505 250 9 7 507 9 493 2.26e-152 445
Msa0398990 MtrunA17_Chr3g0090111 44.235 477 254 4 38 513 20 485 3.31e-152 444
Msa0398990 MtrunA17_Chr2g0288071 44.402 518 276 5 1 514 38 547 1.10e-149 439
Msa0398990 MtrunA17_Chr4g0006111 45.714 490 224 6 35 509 63 525 1.94e-149 438
Msa0398990 MtrunA17_Chr2g0288021 44.356 505 272 5 11 511 12 511 2.80e-148 435
Msa0398990 MtrunA17_Chr4g0006131 46.289 512 227 10 19 512 23 504 5.03e-148 434
Msa0398990 MtrunA17_Chr4g0006971 44.748 476 247 7 36 507 26 489 5.79e-148 434
Msa0398990 MtrunA17_Chr2g0317841 44.654 477 255 5 36 507 31 503 6.66e-148 434
Msa0398990 MtrunA17_Chr4g0074551 44.294 517 274 5 1 513 22 528 8.00e-147 432
Msa0398990 MtrunA17_Chr2g0317821 44.211 475 260 4 36 507 31 503 8.07e-147 431
Msa0398990 MtrunA17_Chr7g0242681 45.996 487 240 12 31 511 33 502 1.46e-145 428
Msa0398990 MtrunA17_Chr1g0195611 43.933 478 244 8 37 507 27 487 5.07e-137 405
Msa0398990 MtrunA17_Chr5g0428831 42.376 505 260 9 9 507 9 488 9.54e-136 402
Msa0398990 MtrunA17_Chr2g0301231 48.565 418 176 7 105 509 1 392 9.86e-129 380
Msa0398990 MtrunA17_Chr1g0195641 45.063 395 200 5 36 424 26 409 4.32e-118 353
Msa0398990 MtrunA17_Chr5g0418871 50.595 336 161 3 58 389 4 338 1.07e-117 350
Msa0398990 MtrunA17_Chr3g0087201 49.697 330 161 2 179 507 17 342 2.42e-117 349
Msa0398990 MtrunA17_Chr7g0234091 40.842 475 261 7 38 509 76 533 4.30e-110 337
Msa0398990 MtrunA17_Chr7g0234111 41.053 475 256 7 38 507 76 531 7.52e-109 334
Msa0398990 MtrunA17_Chr7g0234131 40.632 475 259 8 38 507 76 532 4.14e-108 332
Msa0398990 MtrunA17_Chr7g0230651 43.175 359 184 6 93 447 27 369 1.06e-92 287
Msa0398990 MtrunA17_Chr3g0087191 59.172 169 57 2 11 177 6 164 1.70e-62 201
Msa0398990 MtrunA17_Chr7g0227561 39.474 266 129 4 39 303 48 282 7.01e-59 197
Msa0398990 MtrunA17_Chr7g0236731 44.538 238 116 3 127 358 31 258 7.47e-54 183
Msa0398990 MtrunA17_Chr4g0068871 26.995 426 240 10 94 512 176 537 5.56e-31 127
Msa0398990 MtrunA17_Chr8g0352881 45.631 103 55 1 260 362 57 158 1.37e-22 94.4
Msa0398990 MtrunA17_Chr5g0418861 51.807 83 39 1 426 507 8 90 2.06e-22 91.7
Msa0398990 MtrunA17_Chr2g0288031 54.237 59 27 0 188 246 5 63 7.02e-16 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398990 AT2G44480.1 54.622 476 213 2 35 507 33 508 0.0 558
Msa0398990 AT2G44480.3 54.622 476 213 2 35 507 64 539 0.0 558
Msa0398990 AT2G44450.1 51.760 483 226 3 32 511 26 504 9.74e-180 514
Msa0398990 AT5G44640.1 49.603 504 246 4 12 511 6 505 1.43e-179 514
Msa0398990 AT5G42260.1 50.403 496 238 4 12 503 6 497 3.67e-178 511
Msa0398990 AT3G60130.1 51.546 485 222 7 32 510 25 502 2.57e-172 496
Msa0398990 AT1G26560.1 50.000 478 233 4 35 507 30 506 1.14e-169 489
Msa0398990 AT5G54570.1 49.476 477 236 3 36 507 29 505 9.58e-167 483
Msa0398990 AT2G25630.1 47.695 499 235 6 17 511 10 486 4.85e-166 479
Msa0398990 AT3G18080.1 49.269 479 233 5 35 509 37 509 1.78e-164 476
Msa0398990 AT2G44480.2 53.448 406 186 2 105 507 1 406 4.93e-163 469
Msa0398990 AT3G18070.1 47.423 485 243 6 31 511 24 500 6.96e-161 466
Msa0398990 AT3G18070.3 47.216 485 238 6 31 511 24 494 1.19e-160 466
Msa0398990 AT5G24550.1 47.609 481 243 7 37 509 32 511 1.35e-158 462
Msa0398990 AT1G47600.2 47.280 478 237 7 36 509 44 510 3.50e-155 452
Msa0398990 AT1G61820.1 46.862 478 248 4 35 507 28 504 2.71e-154 450
Msa0398990 AT1G47600.1 47.490 478 237 8 36 509 44 511 3.08e-154 450
Msa0398990 AT3G60140.1 46.778 481 248 6 36 509 25 504 4.46e-154 452
Msa0398990 AT1G51470.1 47.280 478 238 8 36 509 44 511 3.87e-152 444
Msa0398990 AT5G24540.1 47.817 481 242 7 37 509 32 511 6.52e-151 442
Msa0398990 AT2G32860.2 47.257 474 241 7 42 507 99 571 1.33e-149 442
Msa0398990 AT5G25980.2 46.094 512 254 12 12 507 17 522 2.59e-148 436
Msa0398990 AT2G44470.3 44.112 501 271 8 17 509 8 507 4.73e-148 437
Msa0398990 AT3G60120.1 45.979 485 253 8 32 509 9 491 7.78e-148 434
Msa0398990 AT1G02850.2 45.000 480 244 7 37 512 26 489 8.07e-148 433
Msa0398990 AT2G32860.1 46.934 473 243 7 42 507 99 570 2.09e-147 436
Msa0398990 AT5G26000.1 45.665 519 262 11 1 507 1 511 3.06e-145 428
Msa0398990 AT3G60130.2 51.435 418 190 7 99 510 40 450 4.06e-145 425
Msa0398990 AT1G61810.1 43.281 506 278 5 7 507 6 507 3.79e-144 424
Msa0398990 AT5G54570.3 48.700 423 213 2 36 454 29 451 9.82e-144 421
Msa0398990 AT1G02850.5 43.141 503 243 8 37 512 26 512 2.45e-143 422
Msa0398990 AT2G44490.1 43.992 491 262 9 27 507 5 492 9.73e-143 422
Msa0398990 AT5G36890.1 43.975 473 252 5 38 507 17 479 3.05e-142 419
Msa0398990 AT5G36890.2 43.975 473 252 5 38 507 17 479 3.55e-142 418
Msa0398990 AT5G54570.2 49.510 408 201 3 105 507 1 408 1.28e-141 415
Msa0398990 AT1G02850.4 43.056 504 243 9 37 512 26 513 1.59e-141 418
Msa0398990 AT4G21760.2 44.304 474 253 6 42 511 59 525 1.89e-140 416
Msa0398990 AT1G61810.3 44.805 462 249 4 38 494 34 494 5.72e-140 414
Msa0398990 AT4G27830.1 42.012 507 263 10 9 507 1 484 8.11e-140 413
Msa0398990 AT1G66280.1 43.836 511 274 9 8 510 8 513 8.58e-140 414
Msa0398990 AT2G44460.1 44.711 501 264 9 17 507 7 504 2.64e-139 414
Msa0398990 AT2G44480.4 61.538 312 117 2 35 344 64 374 1.12e-138 406
Msa0398990 AT3G60130.3 50.239 418 184 8 99 510 40 439 1.39e-137 405
Msa0398990 AT4G27820.1 44.167 480 241 8 36 507 22 482 1.63e-137 407
Msa0398990 AT1G66270.1 44.330 485 256 9 35 510 34 513 1.78e-136 405
Msa0398990 AT3G03640.1 43.992 516 262 11 9 509 11 514 2.50e-136 405
Msa0398990 AT3G21370.1 42.593 486 265 9 36 510 32 514 3.37e-136 404
Msa0398990 AT1G02850.1 43.125 480 226 8 37 512 26 462 1.94e-135 400
Msa0398990 AT4G22100.1 43.882 474 248 6 38 507 23 482 3.48e-135 401
Msa0398990 AT1G75940.1 44.033 486 258 9 37 510 37 520 3.50e-135 402
Msa0398990 AT1G45191.6 44.239 486 243 9 37 511 29 497 1.69e-134 400
Msa0398990 AT3G09260.1 42.629 502 277 9 16 510 16 513 2.26e-134 400
Msa0398990 AT1G45191.4 43.802 484 237 9 37 511 29 486 1.49e-133 397
Msa0398990 AT1G66270.2 44.124 485 255 10 35 510 34 511 1.59e-133 397
Msa0398990 AT1G45191.1 43.813 493 247 9 37 511 29 509 1.70e-133 397
Msa0398990 AT1G45191.2 44.215 484 241 9 37 511 29 492 1.78e-133 397
Msa0398990 AT4G21760.1 43.249 474 248 7 42 511 59 515 3.16e-133 397
Msa0398990 AT1G60090.2 43.933 478 242 8 37 507 24 482 5.27e-132 393
Msa0398990 AT1G60090.1 42.827 481 250 6 37 507 24 489 1.03e-131 392
Msa0398990 AT3G62750.2 40.864 509 263 10 5 507 23 499 4.70e-131 391
Msa0398990 AT3G62750.1 41.400 500 254 10 14 507 7 473 5.99e-131 390
Msa0398990 AT5G25980.3 45.295 457 230 10 12 454 17 467 7.56e-131 389
Msa0398990 AT5G25980.1 45.295 457 230 10 12 454 17 467 7.56e-131 389
Msa0398990 AT1G52400.3 41.860 516 274 10 8 507 10 515 2.20e-130 389
Msa0398990 AT1G52400.1 41.860 516 274 10 8 507 10 515 2.20e-130 389
Msa0398990 AT5G24540.2 47.642 424 214 6 37 453 32 454 1.88e-128 382
Msa0398990 AT5G26000.2 44.828 464 238 9 1 454 1 456 6.44e-127 378
Msa0398990 AT5G28510.1 39.648 512 295 8 11 510 13 522 9.09e-127 380
Msa0398990 AT2G44450.2 50.420 357 172 2 156 511 1 353 9.08e-125 369
Msa0398990 AT2G44470.1 42.793 444 246 7 17 453 8 450 2.41e-124 371
Msa0398990 AT1G02850.3 44.118 408 193 5 37 418 26 424 1.04e-121 364
Msa0398990 AT1G61810.4 44.365 417 224 4 7 418 6 419 3.62e-121 362
Msa0398990 AT3G60140.2 46.272 389 202 5 36 418 25 412 3.81e-121 363
Msa0398990 AT1G61810.5 44.444 405 219 4 108 507 4 407 5.24e-121 362
Msa0398990 AT3G62740.1 39.623 477 263 8 36 507 22 478 1.89e-119 360
Msa0398990 AT3G18070.4 50.000 344 163 4 31 370 24 362 2.43e-119 356
Msa0398990 AT3G62750.4 40.700 457 234 9 5 456 23 447 5.32e-116 350
Msa0398990 AT4G27830.2 42.195 410 216 7 105 507 1 396 2.81e-115 347
Msa0398990 AT4G27820.2 42.822 411 213 7 105 507 1 397 2.60e-111 337
Msa0398990 AT4G27820.3 42.822 411 213 7 105 507 1 397 2.60e-111 337
Msa0398990 AT1G61820.3 46.006 363 191 3 149 507 4 365 3.07e-111 335
Msa0398990 AT1G52400.2 40.998 461 247 9 8 453 10 460 5.39e-110 335
Msa0398990 AT2G44470.2 47.353 340 173 5 17 351 8 346 7.85e-110 332
Msa0398990 AT1G45191.3 45.902 366 178 4 37 392 29 384 1.55e-108 330
Msa0398990 AT1G45191.5 46.974 347 172 2 37 376 29 370 9.32e-108 327
Msa0398990 AT5G48375.1 41.319 455 199 9 21 472 22 411 1.90e-107 328
Msa0398990 AT3G62740.2 42.377 387 205 6 36 418 22 394 6.93e-107 326
Msa0398990 AT1G60270.1 46.647 343 176 2 37 376 24 362 3.00e-106 322
Msa0398990 AT2G44480.5 48.837 301 153 1 208 507 2 302 4.29e-105 317
Msa0398990 AT3G62750.7 43.127 371 186 5 14 379 7 357 8.30e-105 318
Msa0398990 AT3G62750.8 43.127 371 186 5 14 379 7 357 8.30e-105 318
Msa0398990 AT3G62750.6 40.831 409 215 8 105 507 1 388 5.34e-104 318
Msa0398990 AT3G62750.5 40.831 409 215 8 105 507 1 388 5.34e-104 318
Msa0398990 AT3G62750.3 42.742 372 189 5 5 371 23 375 1.44e-103 317
Msa0398990 AT3G18070.2 46.269 335 171 4 181 511 94 423 7.56e-102 313
Msa0398990 AT3G18070.2 52.174 69 32 1 31 99 24 91 6.48e-14 74.3
Msa0398990 AT3G18070.7 45.886 316 162 4 200 511 1 311 1.43e-94 290
Msa0398990 AT2G44460.2 45.000 360 190 6 154 507 1 358 1.89e-94 294
Msa0398990 AT1G61810.2 50.936 267 130 1 38 303 34 300 1.12e-93 288
Msa0398990 AT1G51490.1 44.509 346 167 9 45 381 28 357 1.97e-88 278
Msa0398990 AT1G60270.2 47.253 273 141 1 107 376 3 275 1.87e-84 263
Msa0398990 AT3G18070.5 47.737 243 121 2 181 419 94 334 5.66e-74 238
Msa0398990 AT3G18070.5 52.174 69 32 1 31 99 24 91 3.34e-14 74.3
Msa0398990 AT3G18070.6 47.321 224 112 2 200 419 1 222 1.18e-66 215
Msa0398990 AT5G16580.1 38.194 288 159 5 181 464 27 299 4.16e-57 192
Msa0398990 AT3G06510.1 26.977 430 235 13 94 512 153 514 1.14e-28 120
Msa0398990 AT3G06510.2 26.067 445 254 15 94 512 153 548 2.51e-25 110

Find 115 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACAAAGATATCATAATT+TGG 0.153192 3_2:-21196040 None:intergenic
GCCATTAAGCATTACATAAT+TGG 0.185949 3_2:-21197975 None:intergenic
ACCAATTATGTAATGCTTAA+TGG 0.213587 3_2:+21197974 Msa0398990:three_prime_UTR
CCAGTGTACATTACTGAAAA+TGG 0.258317 3_2:+21196757 Msa0398990:CDS
CTCAAGGTGGTGAAAGAAAT+TGG 0.260524 3_2:+21192767 Msa0398990:CDS
AGAGAAAATCATGAGGAAAA+AGG 0.269873 3_2:-21191433 None:intergenic
TTTCATTCTCTAGCAACTTA+AGG 0.275153 3_2:+21198050 Msa0398990:three_prime_UTR
TTGGTTGAGCAGATAAGATT+TGG 0.275910 3_2:+21192579 Msa0398990:intron
AGCTCTTGAAGATGAATATA+AGG 0.279995 3_2:+21193328 Msa0398990:CDS
ATGGGAGGGGACCAAGTATA+TGG 0.281964 3_2:+21192241 Msa0398990:CDS
CAATAGTGTTGCTGATAAAA+AGG 0.286184 3_2:+21195567 Msa0398990:CDS
ATATCATAATTTGGGGATAA+TGG 0.289010 3_2:-21196031 None:intergenic
CAACAAAGATATCATAATTT+GGG 0.295754 3_2:-21196039 None:intergenic
TCAGCAACACTATTGGAATA+TGG 0.298995 3_2:-21195559 None:intergenic
ATTTCATAGGCTCATCAAAA+AGG 0.305623 3_2:+21195499 Msa0398990:intron
CCAAATTATGATATCTTTGT+TGG 0.310176 3_2:+21196040 Msa0398990:CDS
CCATTGATGGTGTATGAATA+AGG 0.315978 3_2:-21193707 None:intergenic
GGTAGTGGAGATGGTCATTA+TGG 0.318482 3_2:-21196969 None:intergenic
TTCATATGTATTGAGATAAT+TGG 0.329047 3_2:+21197947 Msa0398990:three_prime_UTR
CCTTTGTAACTCTCTTTCAT+TGG 0.333579 3_2:+21193294 Msa0398990:CDS
GAAGGAGCCTCAGATATAGA+TGG 0.339718 3_2:+21192222 Msa0398990:CDS
GCTTCAAGACATTTGGAGAT+AGG 0.339805 3_2:+21193657 Msa0398990:CDS
TTCATTCTCTAGCAACTTAA+GGG 0.349359 3_2:+21198051 Msa0398990:three_prime_UTR
TACACCATCAATGGATATAA+TGG 0.360639 3_2:+21193716 Msa0398990:CDS
CTTTGTAACTCTCTTTCATT+GGG 0.363734 3_2:+21193295 Msa0398990:CDS
TAGCTCGTAAAGATGGTATT+AGG 0.367113 3_2:+21196938 Msa0398990:CDS
ACTCATACTTTATTCCTTCA+AGG 0.387045 3_2:-21196993 None:intergenic
AATTGGTTCTTCTGCTTACC+AGG 0.392026 3_2:+21191460 Msa0398990:CDS
AGTATACAAGAGAAAATATC+AGG 0.393019 3_2:+21193859 Msa0398990:CDS
GTTATAGAATTTAACTCCTA+AGG 0.398406 3_2:-21193123 None:intergenic
GTCAATATGCTTCATTCAAT+AGG 0.402198 3_2:+21191408 Msa0398990:CDS
TGGAGATAGGGTTAAGCATT+GGG 0.413839 3_2:+21193670 Msa0398990:CDS
AATATCAATAAATAAATTGT+TGG 0.415327 3_2:+21198017 Msa0398990:three_prime_UTR
ATTCACACCAAGAAAATCAT+AGG 0.423764 3_2:-21196114 None:intergenic
GCAGGGTACACAGTACGATT+TGG 0.425268 3_2:+21197762 Msa0398990:CDS
CTTCAAGACATTTGGAGATA+GGG 0.430530 3_2:+21193658 Msa0398990:CDS
TGGTTGAGCAGATAAGATTT+GGG 0.433770 3_2:+21192580 Msa0398990:intron
TTTCAGGCATTGCTACATAT+AGG 0.439893 3_2:+21196893 Msa0398990:intron
CAAATTATGATATCTTTGTT+GGG 0.440379 3_2:+21196041 Msa0398990:CDS
TTTGCTCATCCCATTACATA+TGG 0.442795 3_2:+21196008 Msa0398990:CDS
GCTCTTGAAGATGAATATAA+GGG 0.448342 3_2:+21193329 Msa0398990:CDS
GGGATAATGGCCATATGTAA+TGG 0.452861 3_2:-21196018 None:intergenic
ACCACCATTATATCCATTGA+TGG 0.454476 3_2:-21193720 None:intergenic
ACAAGATCATGAATTCCCTT+TGG 0.455790 3_2:-21196703 None:intergenic
GGTGGTGAAAGAAATTGGTT+TGG 0.457204 3_2:+21192772 Msa0398990:CDS
TTATTCCTTCAAGGAGGTAG+TGG 0.457529 3_2:-21196984 None:intergenic
CCTTATTCATACACCATCAA+TGG 0.460986 3_2:+21193707 Msa0398990:CDS
GACAGCTATGAATGGGATGC+AGG 0.461053 3_2:+21197744 Msa0398990:CDS
TTGGAGATAGGGTTAAGCAT+TGG 0.464172 3_2:+21193669 Msa0398990:CDS
GGATAATGGCCATATGTAAT+GGG 0.468368 3_2:-21196017 None:intergenic
GTCAATGTAGCTCGTAAAGA+TGG 0.471396 3_2:+21196931 Msa0398990:CDS
TCTTTACGAGCTACATTGAC+TGG 0.472609 3_2:-21196928 None:intergenic
GTGAATGTGTCCCATATACT+TGG 0.475650 3_2:-21192252 None:intergenic
CATCTCCACTACCTCCTTGA+AGG 0.477901 3_2:+21196979 Msa0398990:CDS
TTTGCAGCCATGAGAGCTAT+AGG 0.482231 3_2:+21191305 Msa0398990:exon
TTCCAGTGACAACAGCCAAA+AGG 0.487795 3_2:-21191361 None:intergenic
TGGTGTATCCATTGGTCCCT+CGG 0.492515 3_2:+21196334 Msa0398990:CDS
ATTCATCTTCAAGAGCTTGT+GGG 0.498399 3_2:-21193322 None:intergenic
TATTCATCTTCAAGAGCTTG+TGG 0.500590 3_2:-21193323 None:intergenic
GCTGCAAAAGTTCCTTCTCA+AGG 0.500855 3_2:+21197845 Msa0398990:CDS
AAGTTATGAGCAACAATGTA+GGG 0.502836 3_2:-21193809 None:intergenic
TGGGAGGGGACCAAGTATAT+GGG 0.502889 3_2:+21192242 Msa0398990:CDS
TCCAGTGACAACAGCCAAAA+GGG 0.503504 3_2:-21191360 None:intergenic
TTATAGAATTTAACTCCTAA+GGG 0.511535 3_2:-21193122 None:intergenic
CAAGTTATGAGCAACAATGT+AGG 0.512417 3_2:-21193810 None:intergenic
ATTAATGAGATCCTAGCAAA+TGG 0.514914 3_2:+21193152 Msa0398990:CDS
TATGTTGCAAATTGCACTAC+TGG 0.515491 3_2:+21193770 Msa0398990:CDS
TTGTGCAGACTGATTTGACT+TGG 0.516870 3_2:+21196668 Msa0398990:intron
AAATCATACCGAGGGACCAA+TGG 0.522180 3_2:-21196342 None:intergenic
GTAATATACTAAGGTGACAT+TGG 0.525266 3_2:-21197919 None:intergenic
TGGTCAAATAAGTGATATCA+AGG 0.528091 3_2:+21198082 Msa0398990:three_prime_UTR
AAGGAGCCTCAGATATAGAT+GGG 0.528884 3_2:+21192223 Msa0398990:CDS
CATTCTCTAGCAACTTAAGG+GGG 0.532305 3_2:+21198053 Msa0398990:three_prime_UTR
GGAAGGACCTATAGCTCTCA+TGG 0.533732 3_2:-21191312 None:intergenic
TGAACGCAAGTAATATACTA+AGG 0.534230 3_2:-21197928 None:intergenic
TTCAAAGAAGTGAGTCACTA+AGG 0.542315 3_2:-21195536 None:intergenic
TGGCTCTATGTCTATCCAAA+GGG 0.545375 3_2:+21196688 Msa0398990:CDS
AGCCTCAGATATAGATGGGA+GGG 0.549294 3_2:+21192227 Msa0398990:CDS
TTGAAGAATGGTGTATCCAT+TGG 0.550604 3_2:+21196326 Msa0398990:CDS
CTTCAAGGAGGTAGTGGAGA+TGG 0.557183 3_2:-21196978 None:intergenic
TTGAATGAAGCATATTGACT+TGG 0.557314 3_2:-21191404 None:intergenic
TTGATCACAGCATTGAAGAA+TGG 0.563467 3_2:+21196314 Msa0398990:intron
CTGCAAAAGTTCCTTCTCAA+GGG 0.565586 3_2:+21197846 Msa0398990:CDS
GATATCATATGCAGAGGGCA+AGG 0.565708 3_2:+21193088 Msa0398990:intron
GAATATTCTTGACCATGAGA+TGG 0.567125 3_2:-21192810 None:intergenic
CTCCTACATTACCACTGCTA+TGG 0.568763 3_2:-21192604 None:intergenic
ATATCATATGCAGAGGGCAA+GGG 0.568782 3_2:+21193089 Msa0398990:intron
TTGGCTCTATGTCTATCCAA+AGG 0.570642 3_2:+21196687 Msa0398990:CDS
GCCTCAGATATAGATGGGAG+GGG 0.572757 3_2:+21192228 Msa0398990:CDS
CCAATGAAAGAGAGTTACAA+AGG 0.573192 3_2:-21193294 None:intergenic
TGCATCCCATTCATAGCTGT+CGG 0.573399 3_2:-21197742 None:intergenic
CAATTTCTTTCACCACCTTG+AGG 0.574734 3_2:-21192766 None:intergenic
ATGTGAAGGGCTACTATGCA+TGG 0.578020 3_2:+21197712 Msa0398990:CDS
TCCCCTCCCATCTATATCTG+AGG 0.583431 3_2:-21192229 None:intergenic
ACATTCACTAAACAAAATCC+AGG 0.587307 3_2:+21192267 Msa0398990:CDS
TATCATATGCAGAGGGCAAG+GGG 0.588157 3_2:+21193090 Msa0398990:intron
CATACAGATTCTCCATCTCA+TGG 0.592212 3_2:+21192798 Msa0398990:CDS
GACCATAGCAGTGGTAATGT+AGG 0.599218 3_2:+21192602 Msa0398990:CDS
CAATGAAAGAGAGTTACAAA+GGG 0.601814 3_2:-21193293 None:intergenic
CTTGAAGCAAAAGTCAGCAT+AGG 0.616391 3_2:-21193642 None:intergenic
TCATTCTCTAGCAACTTAAG+GGG 0.622675 3_2:+21198052 Msa0398990:three_prime_UTR
CAGACATGGTGCAAATGTGA+AGG 0.623231 3_2:+21197698 Msa0398990:intron
AACAAAGATATCATAATTTG+GGG 0.628062 3_2:-21196038 None:intergenic
ACAGCTATGAATGGGATGCA+GGG 0.632968 3_2:+21197745 Msa0398990:CDS
ATTCTCTAGCAACTTAAGGG+GGG 0.633930 3_2:+21198054 Msa0398990:three_prime_UTR
ACATATTTAGAACATCTACC+AGG 0.648943 3_2:-21193752 None:intergenic
ACCATCAATGGATATAATGG+TGG 0.653634 3_2:+21193719 Msa0398990:CDS
GAGCCTCAGATATAGATGGG+AGG 0.661750 3_2:+21192226 Msa0398990:CDS
ACTGCTTTGTGCATAATATG+TGG 0.670752 3_2:-21196144 None:intergenic
CATACTTTATTCCTTCAAGG+AGG 0.672177 3_2:-21196990 None:intergenic
ATTCCAAAGAGAAAATCATG+AGG 0.675686 3_2:-21191440 None:intergenic
AAGATTTGGGACCATAGCAG+TGG 0.678867 3_2:+21192593 Msa0398990:CDS
AGACATGGTGCAAATGTGAA+GGG 0.689499 3_2:+21197699 Msa0398990:intron
ATCATATGCAGAGGGCAAGG+GGG 0.702617 3_2:+21193091 Msa0398990:intron
TTTGTAGGAAGACCTCAAGG+TGG 0.734404 3_2:+21192754 Msa0398990:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATATACTATTTAG+TGG - chr3_2:21191492-21191511 None:intergenic 10.0%
!!! AATTAAAATCTAAAATAAGT+TGG + chr3_2:21192014-21192033 Msa0398990:intron 10.0%
!! AAATCAATGAAAAATAAATA+GGG - chr3_2:21192296-21192315 None:intergenic 10.0%
!!! AAAGATATATTTTTTTTTTG+AGG + chr3_2:21192847-21192866 Msa0398990:intron 10.0%
!!! AAGATATATTTTTTTTTTGA+GGG + chr3_2:21192848-21192867 Msa0398990:intron 10.0%
!!! TTTTTCATTTTTTTTATACT+AGG - chr3_2:21192946-21192965 None:intergenic 10.0%
!! AAAGTAATTAGTAATTATAT+AGG - chr3_2:21193185-21193204 None:intergenic 10.0%
!!! AAGAAAAAAATTGTTTTATT+TGG - chr3_2:21193407-21193426 None:intergenic 10.0%
!! AATTATAGTATAAAACAAAA+AGG - chr3_2:21195415-21195434 None:intergenic 10.0%
!!! TTTATAGGATAAATTTTATT+TGG + chr3_2:21195947-21195966 Msa0398990:intron 10.0%
!! AATATCAATAAATAAATTGT+TGG + chr3_2:21198017-21198036 Msa0398990:three_prime_UTR 10.0%
!!! AGTATATTTATTTTGTTACA+TGG + chr3_2:21191498-21191517 Msa0398990:intron 15.0%
!!! AAAAATAGATCTAACATTTT+TGG + chr3_2:21191662-21191681 Msa0398990:intron 15.0%
!!! TTTTTTTTTAAGAAGCTAAA+AGG + chr3_2:21191876-21191895 Msa0398990:intron 15.0%
!!! TTTTAGATTTTAATTTTTGG+TGG - chr3_2:21192009-21192028 None:intergenic 15.0%
!! CAAATCAATGAAAAATAAAT+AGG - chr3_2:21192297-21192316 None:intergenic 15.0%
!!! CTATTTATTTTTCATTGATT+TGG + chr3_2:21192295-21192314 Msa0398990:intron 15.0%
!! TTTACTTATAAATAGTTTAC+CGG + chr3_2:21192331-21192350 Msa0398990:intron 15.0%
!!! ATAAACTTCAATTATTTTGT+AGG + chr3_2:21192739-21192758 Msa0398990:intron 15.0%
!!! AGATATATTTTTTTTTTGAG+GGG + chr3_2:21192849-21192868 Msa0398990:intron 15.0%
!!! AAAAATTGTTTTATTTGGAA+AGG - chr3_2:21193402-21193421 None:intergenic 15.0%
!!! ATTAATTTAATGGATAAAAC+AGG + chr3_2:21193606-21193625 Msa0398990:intron 15.0%
!! TATATATTGCATAAACAAAT+AGG + chr3_2:21193914-21193933 Msa0398990:intron 15.0%
!! ATATATTGCATAAACAAATA+GGG + chr3_2:21193915-21193934 Msa0398990:intron 15.0%
!! CATTAAATAAATTATGTATC+TGG - chr3_2:21194057-21194076 None:intergenic 15.0%
!!! TCATATGTTAATATTTTCTT+CGG - chr3_2:21194114-21194133 None:intergenic 15.0%
!!! TAAGTATTTTTTTTTAAGGT+AGG + chr3_2:21194559-21194578 Msa0398990:intron 15.0%
!! ATCAAATGTTTCTTATAATA+AGG - chr3_2:21194692-21194711 None:intergenic 15.0%
!!! TAAGAAACATTTGATTTTTT+AGG + chr3_2:21194697-21194716 Msa0398990:intron 15.0%
!!! CATTATCAATTATTTTTTGA+AGG + chr3_2:21195234-21195253 Msa0398990:intron 15.0%
!! TTAACAAATGTAATATTAGT+TGG - chr3_2:21195392-21195411 None:intergenic 15.0%
!!! AACAAATTAATTTTTTTTCC+AGG + chr3_2:21195985-21196004 Msa0398990:intron 15.0%
!! AAATTAGAATATAGTTATTG+TGG - chr3_2:21196536-21196555 None:intergenic 15.0%
!!! TTGTTTTATGAATATTTTTC+AGG + chr3_2:21196877-21196896 Msa0398990:intron 15.0%
!! ATATTTAATCAAGAGTTTAA+TGG + chr3_2:21197044-21197063 Msa0398990:intron 15.0%
!! AGTATAATATAATTAGACAA+AGG - chr3_2:21197088-21197107 None:intergenic 15.0%
!! TTAATACATATTCCAACATA+AGG + chr3_2:21191574-21191593 Msa0398990:intron 20.0%
!! TAATACATATTCCAACATAA+GGG + chr3_2:21191575-21191594 Msa0398990:intron 20.0%
!!! TTATTATTTGAACTTGTTCA+TGG + chr3_2:21191622-21191641 Msa0398990:intron 20.0%
!! ACAAATTATTCTTTACTGTA+TGG + chr3_2:21191699-21191718 Msa0398990:intron 20.0%
!! CAAATTATTCTTTACTGTAT+GGG + chr3_2:21191700-21191719 Msa0398990:intron 20.0%
!!! ATATTTTAAAACCGTTTTGT+TGG - chr3_2:21191958-21191977 None:intergenic 20.0%
!! CATAAACATTTGATATATGT+AGG - chr3_2:21192421-21192440 None:intergenic 20.0%
!! AATTAAATTTCTCTCTATCT+TGG + chr3_2:21192560-21192579 Msa0398990:intron 20.0%
!!! ATATCTTTGTTATCTTACTT+GGG - chr3_2:21192835-21192854 None:intergenic 20.0%
!!! TATATCTTTGTTATCTTACT+TGG - chr3_2:21192836-21192855 None:intergenic 20.0%
!! TTATAGAATTTAACTCCTAA+GGG - chr3_2:21193125-21193144 None:intergenic 20.0%
!! ATAAGTGAATTACTGAAAAA+TGG - chr3_2:21193210-21193229 None:intergenic 20.0%
!!! ATTACATCCTTAAAAAGTTT+TGG + chr3_2:21194456-21194475 Msa0398990:intron 20.0%
!!! GTCAATTGTTTCTTATAATA+AGG + chr3_2:21194791-21194810 Msa0398990:intron 20.0%
!! CAATATTAATTATTGGAATG+TGG - chr3_2:21195202-21195221 None:intergenic 20.0%
!! TCGTCAACAATATTAATTAT+TGG - chr3_2:21195209-21195228 None:intergenic 20.0%
!!! CCATAATTGATAATATTAGT+TGG - chr3_2:21195264-21195283 None:intergenic 20.0%
!! CCAACTAATATTATCAATTA+TGG + chr3_2:21195261-21195280 Msa0398990:intron 20.0%
!! TTAAGAGAAAAAAGTTTATG+TGG + chr3_2:21195318-21195337 Msa0398990:intron 20.0%
!!! GAAATTTTGTTTCATTTCAT+AGG + chr3_2:21195486-21195505 Msa0398990:intron 20.0%
!! TATAAAAAATCTACTTGAGT+TGG + chr3_2:21195681-21195700 Msa0398990:intron 20.0%
!!! CATTTTACTCTACTTTTAAA+CGG + chr3_2:21195727-21195746 Msa0398990:intron 20.0%
!!! ATTTTACTCTACTTTTAAAC+GGG + chr3_2:21195728-21195747 Msa0398990:intron 20.0%
!!! GCAAGAAATTAATTTTGTAA+CGG - chr3_2:21195878-21195897 None:intergenic 20.0%
!!! AATTTTGAGTACTTGTTTAT+AGG + chr3_2:21195932-21195951 Msa0398990:intron 20.0%
!! AACAAAGATATCATAATTTG+GGG - chr3_2:21196041-21196060 None:intergenic 20.0%
!! CAACAAAGATATCATAATTT+GGG - chr3_2:21196042-21196061 None:intergenic 20.0%
!! CAAATTATGATATCTTTGTT+GGG + chr3_2:21196041-21196060 Msa0398990:CDS 20.0%
!!! AACAATATCATACAATGTTT+TGG + chr3_2:21196606-21196625 Msa0398990:intron 20.0%
!!! ACAATATCATACAATGTTTT+GGG + chr3_2:21196607-21196626 Msa0398990:intron 20.0%
!! TATCACAACAATTATTTACT+TGG + chr3_2:21197137-21197156 Msa0398990:intron 20.0%
!! TGTTTAATTAACGAGTTTAA+AGG - chr3_2:21197171-21197190 None:intergenic 20.0%
!! AATAAGTTATTTATCGAAAC+AGG + chr3_2:21197623-21197642 Msa0398990:intron 20.0%
!! TTCATATGTATTGAGATAAT+TGG + chr3_2:21197947-21197966 Msa0398990:three_prime_UTR 20.0%
! TAGAGAAAAAAGATAGAGAA+GGG - chr3_2:21191336-21191355 None:intergenic 25.0%
! ACAAAATAAGAAGTGAGTAA+TGG - chr3_2:21191555-21191574 None:intergenic 25.0%
! TACATTAAAGATTGCAACAT+AGG - chr3_2:21191854-21191873 None:intergenic 25.0%
! TTACTTGATCATTTGTTTCA+GGG - chr3_2:21192078-21192097 None:intergenic 25.0%
!!! TGAATCATTTACCATTTTTC+AGG + chr3_2:21192197-21192216 Msa0398990:intron 25.0%
!! TGTTATGAGGTAATTTTTGT+TGG + chr3_2:21192464-21192483 Msa0398990:intron 25.0%
!! TGATTTTTATCATCGATACA+AGG + chr3_2:21192628-21192647 Msa0398990:CDS 25.0%
!!! TATTTTTTTTTTGAGGGGAA+AGG + chr3_2:21192854-21192873 Msa0398990:intron 25.0%
! GTTATAGAATTTAACTCCTA+AGG - chr3_2:21193126-21193145 None:intergenic 25.0%
! GGAAAGGAATTAAGTTAATA+GGG - chr3_2:21193386-21193405 None:intergenic 25.0%
! TGGAAAGGAATTAAGTTAAT+AGG - chr3_2:21193387-21193406 None:intergenic 25.0%
! ACGATACATTATAATATGCA+GGG - chr3_2:21193535-21193554 None:intergenic 25.0%
!! ATTTAATGGATAAAACAGGA+AGG + chr3_2:21193610-21193629 Msa0398990:intron 25.0%
! AGTATACAAGAGAAAATATC+AGG + chr3_2:21193859-21193878 Msa0398990:CDS 25.0%
! AAGAGAAAATATCAGGTAAT+TGG + chr3_2:21193866-21193885 Msa0398990:intron 25.0%
! TTGTTTGGTATAAAAGAAAG+TGG + chr3_2:21194386-21194405 Msa0398990:intron 25.0%
!! AATGTAGCCAAAACTTTTTA+AGG - chr3_2:21194466-21194485 None:intergenic 25.0%
! ACACGTTAATGTCTAAAAAA+TGG + chr3_2:21194642-21194661 Msa0398990:intron 25.0%
! TATATTAACTTATGCCCTTA+GGG - chr3_2:21195051-21195070 None:intergenic 25.0%
! TTATATTAACTTATGCCCTT+AGG - chr3_2:21195052-21195071 None:intergenic 25.0%
! TGTCTATATCAACATGTTAA+GGG - chr3_2:21195075-21195094 None:intergenic 25.0%
! TTGTCTATATCAACATGTTA+AGG - chr3_2:21195076-21195095 None:intergenic 25.0%
!! ATTATCAATTATGGTTGATG+TGG + chr3_2:21195270-21195289 Msa0398990:intron 25.0%
!!! CTCAAGTAGATTTTTTATAC+AGG - chr3_2:21195680-21195699 None:intergenic 25.0%
!!! TTTTACTCTACTTTTAAACG+GGG + chr3_2:21195729-21195748 Msa0398990:intron 25.0%
! ATTAGATCTCTTAGATTAGT+CGG + chr3_2:21195773-21195792 Msa0398990:intron 25.0%
! ATATCATAATTTGGGGATAA+TGG - chr3_2:21196034-21196053 None:intergenic 25.0%
! CCAACAAAGATATCATAATT+TGG - chr3_2:21196043-21196062 None:intergenic 25.0%
! CCAAATTATGATATCTTTGT+TGG + chr3_2:21196040-21196059 Msa0398990:CDS 25.0%
!!! ATTCTAGTTTTGTGAATTTG+GGG - chr3_2:21196076-21196095 None:intergenic 25.0%
!!! GATTCTAGTTTTGTGAATTT+GGG - chr3_2:21196077-21196096 None:intergenic 25.0%
!!! AGATTCTAGTTTTGTGAATT+TGG - chr3_2:21196078-21196097 None:intergenic 25.0%
!! AAAGATTCCTATGATTTTCT+TGG + chr3_2:21196107-21196126 Msa0398990:CDS 25.0%
! TGATCAAGTGAAAAATGTAA+TGG - chr3_2:21196301-21196320 None:intergenic 25.0%
! GAAAAAAAAAATCATACCGA+GGG - chr3_2:21196353-21196372 None:intergenic 25.0%
! CAATTTAAATCTTCGATCTA+TGG - chr3_2:21196447-21196466 None:intergenic 25.0%
!!! TTTTTTTGTCTTAGATGAAG+TGG - chr3_2:21197412-21197431 None:intergenic 25.0%
!! AAACTATATTGAAGAGCATA+TGG - chr3_2:21197479-21197498 None:intergenic 25.0%
! ACCAATTATGTAATGCTTAA+TGG + chr3_2:21197974-21197993 Msa0398990:three_prime_UTR 25.0%
CTAGAGAAAAAAGATAGAGA+AGG - chr3_2:21191337-21191356 None:intergenic 30.0%
! TTGAATGAAGCATATTGACT+TGG - chr3_2:21191407-21191426 None:intergenic 30.0%
GTCAATATGCTTCATTCAAT+AGG + chr3_2:21191408-21191427 Msa0398990:CDS 30.0%
AGAGAAAATCATGAGGAAAA+AGG - chr3_2:21191436-21191455 None:intergenic 30.0%
! TTTCCTCATGATTTTCTCTT+TGG + chr3_2:21191437-21191456 Msa0398990:CDS 30.0%
ATTCCAAAGAGAAAATCATG+AGG - chr3_2:21191443-21191462 None:intergenic 30.0%
!!! CATGATTTTCTCTTTGGAAT+TGG + chr3_2:21191443-21191462 Msa0398990:CDS 30.0%
AGCAAACATTGCAAATAAAC+TGG - chr3_2:21191601-21191620 None:intergenic 30.0%
TATAGCCACAACATTAAGAA+GGG - chr3_2:21191785-21191804 None:intergenic 30.0%
ATATAGCCACAACATTAAGA+AGG - chr3_2:21191786-21191805 None:intergenic 30.0%
GTTACTTGATCATTTGTTTC+AGG - chr3_2:21192079-21192098 None:intergenic 30.0%
! AAAATCAAGGTCTTGTATCA+TGG - chr3_2:21192147-21192166 None:intergenic 30.0%
!!! TTTACCATTTTTCAGGTAGA+AGG + chr3_2:21192204-21192223 Msa0398990:intron 30.0%
ACATTCACTAAACAAAATCC+AGG + chr3_2:21192267-21192286 Msa0398990:CDS 30.0%
GAAAAATAAATAGGGTAACC+TGG - chr3_2:21192288-21192307 None:intergenic 30.0%
! TATGCAACTCTTTTCCTATT+TGG + chr3_2:21192437-21192456 Msa0398990:intron 30.0%
! ATGCAACTCTTTTCCTATTT+GGG + chr3_2:21192438-21192457 Msa0398990:intron 30.0%
ACTTAGTGACAAGAGATTTA+AGG - chr3_2:21192980-21192999 None:intergenic 30.0%
TGTAATGATATCATATGCAG+AGG + chr3_2:21193082-21193101 Msa0398990:intron 30.0%
GTAATGATATCATATGCAGA+GGG + chr3_2:21193083-21193102 Msa0398990:intron 30.0%
ATTAATGAGATCCTAGCAAA+TGG + chr3_2:21193152-21193171 Msa0398990:CDS 30.0%
! TAGGATTTTTACCATTTGCT+AGG - chr3_2:21193166-21193185 None:intergenic 30.0%
!!! CTCATTGAGAACTCATTTTT+TGG + chr3_2:21193247-21193266 Msa0398990:intron 30.0%
!!! AACTCATTTTTTGGCTTACA+TGG + chr3_2:21193256-21193275 Msa0398990:intron 30.0%
CAATGAAAGAGAGTTACAAA+GGG - chr3_2:21193296-21193315 None:intergenic 30.0%
CTTTGTAACTCTCTTTCATT+GGG + chr3_2:21193295-21193314 Msa0398990:CDS 30.0%
AGCTCTTGAAGATGAATATA+AGG + chr3_2:21193328-21193347 Msa0398990:CDS 30.0%
GCTCTTGAAGATGAATATAA+GGG + chr3_2:21193329-21193348 Msa0398990:CDS 30.0%
! TGACTAGAATTCACCTTTTA+AGG + chr3_2:21193476-21193495 Msa0398990:intron 30.0%
!!! ACCTTTTAAGGTGATAAATG+AGG + chr3_2:21193488-21193507 Msa0398990:intron 30.0%
ACCTCATTTATCACCTTAAA+AGG - chr3_2:21193492-21193511 None:intergenic 30.0%
TACATTATAATATGCAGGGT+CGG - chr3_2:21193531-21193550 None:intergenic 30.0%
GACGATACATTATAATATGC+AGG - chr3_2:21193536-21193555 None:intergenic 30.0%
TACACCATCAATGGATATAA+TGG + chr3_2:21193716-21193735 Msa0398990:CDS 30.0%
! ACATATTTAGAACATCTACC+AGG - chr3_2:21193755-21193774 None:intergenic 30.0%
AAGTTATGAGCAACAATGTA+GGG - chr3_2:21193812-21193831 None:intergenic 30.0%
TACTTATAAATGTGACCAGA+TGG - chr3_2:21193953-21193972 None:intergenic 30.0%
TAAAATGAGCAACTTTGGAT+TGG - chr3_2:21194245-21194264 None:intergenic 30.0%
! AATCCAAAGTTGCTCATTTT+AGG + chr3_2:21194244-21194263 Msa0398990:intron 30.0%
GAGTAAGGAAAGATTATATG+AGG + chr3_2:21194327-21194346 Msa0398990:intron 30.0%
GAAAAAGAATAGAAAGTGAG+AGG + chr3_2:21194353-21194372 Msa0398990:intron 30.0%
AAAGTGGAATAGAAAGTGAA+AGG + chr3_2:21194402-21194421 Msa0398990:intron 30.0%
TTCTTATAATAAGGACCAGA+GGG - chr3_2:21194800-21194819 None:intergenic 30.0%
TTTCTTATAATAAGGACCAG+AGG - chr3_2:21194799-21194818 None:intergenic 30.0%
TTTCTTATAATAAGGACCAG+AGG + chr3_2:21194799-21194818 Msa0398990:intron 30.0%
TTCTTATAATAAGGACCAGA+GGG + chr3_2:21194800-21194819 Msa0398990:intron 30.0%
! ATGTTACATCAAGGCTATTT+TGG + chr3_2:21194829-21194848 Msa0398990:intron 30.0%
! TGGACATTTTCCCATAAAAT+TGG + chr3_2:21194849-21194868 Msa0398990:intron 30.0%
CATGTTCGTCAAAATTCATA+TGG + chr3_2:21195107-21195126 Msa0398990:intron 30.0%
TTTCAAACATCATCGTAACT+AGG - chr3_2:21195167-21195186 None:intergenic 30.0%
AATATTAGTTGGTCACATGA+AGG - chr3_2:21195381-21195400 None:intergenic 30.0%
ATTTCATAGGCTCATCAAAA+AGG + chr3_2:21195499-21195518 Msa0398990:intron 30.0%
GCTCATCAAAAAGGAAAAAT+TGG + chr3_2:21195508-21195527 Msa0398990:CDS 30.0%
! CTTTTTATCAGCAACACTAT+TGG - chr3_2:21195569-21195588 None:intergenic 30.0%
! CAATAGTGTTGCTGATAAAA+AGG + chr3_2:21195567-21195586 Msa0398990:CDS 30.0%
ATTCACACCAAGAAAATCAT+AGG - chr3_2:21196117-21196136 None:intergenic 30.0%
!!! TAGTCCATTTCGACATTTTT+TGG - chr3_2:21196173-21196192 None:intergenic 30.0%
GGAAAAAAAAAATCATACCG+AGG - chr3_2:21196354-21196373 None:intergenic 30.0%
AAATAAACAACGAAATCACG+AGG - chr3_2:21196375-21196394 None:intergenic 30.0%
GATCTATGGTGTGAAAAAAT+TGG - chr3_2:21196433-21196452 None:intergenic 30.0%
TATAGTTATTGTGGCTTCAT+AGG - chr3_2:21196527-21196546 None:intergenic 30.0%
!! TTTGGGTTATTTCTTACCTA+AGG + chr3_2:21196624-21196643 Msa0398990:intron 30.0%
! AAGTTTTGCTTGATTACCTT+AGG - chr3_2:21196643-21196662 None:intergenic 30.0%
! GGTAATCAAGCAAAACTTTT+TGG + chr3_2:21196645-21196664 Msa0398990:intron 30.0%
TTATATTAGTCAGTAGAAGC+TGG + chr3_2:21196827-21196846 Msa0398990:intron 30.0%
ACTCATACTTTATTCCTTCA+AGG - chr3_2:21196996-21197015 None:intergenic 30.0%
! TTGTATACGCTATAAGTTGA+TGG - chr3_2:21197508-21197527 None:intergenic 30.0%
CACAATGAATTGATTGAACA+TGG + chr3_2:21197648-21197667 Msa0398990:intron 30.0%
! GAACATGGTAGTTAATGTTT+TGG + chr3_2:21197663-21197682 Msa0398990:intron 30.0%
GTAATATACTAAGGTGACAT+TGG - chr3_2:21197922-21197941 None:intergenic 30.0%
TGAACGCAAGTAATATACTA+AGG - chr3_2:21197931-21197950 None:intergenic 30.0%
GCCATTAAGCATTACATAAT+TGG - chr3_2:21197978-21197997 None:intergenic 30.0%
TTTCATTCTCTAGCAACTTA+AGG + chr3_2:21198050-21198069 Msa0398990:three_prime_UTR 30.0%
TTCATTCTCTAGCAACTTAA+GGG + chr3_2:21198051-21198070 Msa0398990:three_prime_UTR 30.0%
TGGTCAAATAAGTGATATCA+AGG + chr3_2:21198082-21198101 Msa0398990:three_prime_UTR 30.0%
GAAAAAAGATAGAGAAGGGA+AGG - chr3_2:21191332-21191351 None:intergenic 35.0%
! TTTTTCTCTAGCTACCCTTT+TGG + chr3_2:21191346-21191365 Msa0398990:CDS 35.0%
ACTATTTAGTGGTATGAACC+TGG - chr3_2:21191481-21191500 None:intergenic 35.0%
TGTTGCTAATGCTAGCTATA+TGG - chr3_2:21191528-21191547 None:intergenic 35.0%
AAATAAACTGGCCCTTATGT+TGG - chr3_2:21191589-21191608 None:intergenic 35.0%
TATTGCCCTTCTTAATGTTG+TGG + chr3_2:21191777-21191796 Msa0398990:intron 35.0%
! GCAGTAACATCAAGGTATTA+AGG - chr3_2:21191832-21191851 None:intergenic 35.0%
TCAAATGGAAGCCAACAAAA+CGG + chr3_2:21191944-21191963 Msa0398990:intron 35.0%
TTGAGTAACTCATAAGCTCT+CGG + chr3_2:21191977-21191996 Msa0398990:intron 35.0%
GATCTAAACTTCATTCTTCG+TGG - chr3_2:21192056-21192075 None:intergenic 35.0%
GCTGGATACACATAAAATCA+AGG - chr3_2:21192160-21192179 None:intergenic 35.0%
! TGATTTTATGTGTATCCAGC+TGG + chr3_2:21192160-21192179 Msa0398990:intron 35.0%
TTGGTTGAGCAGATAAGATT+TGG + chr3_2:21192579-21192598 Msa0398990:intron 35.0%
TGGTTGAGCAGATAAGATTT+GGG + chr3_2:21192580-21192599 Msa0398990:intron 35.0%
! TATTTTGTAGGAAGACCTCA+AGG + chr3_2:21192751-21192770 Msa0398990:intron 35.0%
GAATATTCTTGACCATGAGA+TGG - chr3_2:21192813-21192832 None:intergenic 35.0%
!!! TCATTTTTTGGCTTACATGG+TGG + chr3_2:21193259-21193278 Msa0398990:intron 35.0%
CCAATGAAAGAGAGTTACAA+AGG - chr3_2:21193297-21193316 None:intergenic 35.0%
CCTTTGTAACTCTCTTTCAT+TGG + chr3_2:21193294-21193313 Msa0398990:CDS 35.0%
ATTCATCTTCAAGAGCTTGT+GGG - chr3_2:21193325-21193344 None:intergenic 35.0%
TATTCATCTTCAAGAGCTTG+TGG - chr3_2:21193326-21193345 None:intergenic 35.0%
CTAGTCATCAAACAACTTGA+AGG - chr3_2:21193463-21193482 None:intergenic 35.0%
ACATTATAATATGCAGGGTC+GGG - chr3_2:21193530-21193549 None:intergenic 35.0%
TTGTGATGATAGCTCAGTTA+GGG - chr3_2:21193561-21193580 None:intergenic 35.0%
! GACTTTTGCTTCAAGACATT+TGG + chr3_2:21193650-21193669 Msa0398990:CDS 35.0%
CTTCAAGACATTTGGAGATA+GGG + chr3_2:21193658-21193677 Msa0398990:CDS 35.0%
!! CCATTGATGGTGTATGAATA+AGG - chr3_2:21193710-21193729 None:intergenic 35.0%
CCTTATTCATACACCATCAA+TGG + chr3_2:21193707-21193726 Msa0398990:CDS 35.0%
ACCATCAATGGATATAATGG+TGG + chr3_2:21193719-21193738 Msa0398990:CDS 35.0%
ACCACCATTATATCCATTGA+TGG - chr3_2:21193723-21193742 None:intergenic 35.0%
TATGTTGCAAATTGCACTAC+TGG + chr3_2:21193770-21193789 Msa0398990:CDS 35.0%
CAAGTTATGAGCAACAATGT+AGG - chr3_2:21193813-21193832 None:intergenic 35.0%
!!! GGGTATTTTGATATTCCATC+TGG + chr3_2:21193935-21193954 Msa0398990:intron 35.0%
TCTTTAACATGTGCTCTTGA+GGG - chr3_2:21194153-21194172 None:intergenic 35.0%
TTCTTTAACATGTGCTCTTG+AGG - chr3_2:21194154-21194173 None:intergenic 35.0%
GAACCTAAAATGAGCAACTT+TGG - chr3_2:21194250-21194269 None:intergenic 35.0%
GGATGATCAAAGAAAGTGAA+AGG + chr3_2:21194297-21194316 Msa0398990:intron 35.0%
GTGAAAGGAAAGAAAGAGTA+AGG + chr3_2:21194312-21194331 Msa0398990:intron 35.0%
! AGAAAGTGAGAGGATTGTTT+TGG + chr3_2:21194363-21194382 Msa0398990:intron 35.0%
!!! AGAGGATTGTTTTGGTTGTT+TGG + chr3_2:21194371-21194390 Msa0398990:intron 35.0%
GGAAAGAGTGATGTGTATAT+TGG + chr3_2:21194423-21194442 Msa0398990:intron 35.0%
ATGTAACATATTACTCCCTC+TGG - chr3_2:21194818-21194837 None:intergenic 35.0%
GGGAGTAATATGTTACATCA+AGG + chr3_2:21194820-21194839 Msa0398990:intron 35.0%
! GTGGAATGCACCAATTTTAT+GGG - chr3_2:21194862-21194881 None:intergenic 35.0%
! AGTGGAATGCACCAATTTTA+TGG - chr3_2:21194863-21194882 None:intergenic 35.0%
!!! GGAAAAGAAAGTTTTGAGGT+GGG - chr3_2:21194928-21194947 None:intergenic 35.0%
!!! AGGAAAAGAAAGTTTTGAGG+TGG - chr3_2:21194929-21194948 None:intergenic 35.0%
! GGTAGGAAAAGAAAGTTTTG+AGG - chr3_2:21194932-21194951 None:intergenic 35.0%
! TACAGTACTTTTCCACTGTT+TGG - chr3_2:21194969-21194988 None:intergenic 35.0%
GATAAGGGAAAGAAAGGATA+GGG - chr3_2:21195008-21195027 None:intergenic 35.0%
AGATAAGGGAAAGAAAGGAT+AGG - chr3_2:21195009-21195028 None:intergenic 35.0%
TGGAAAGATAAGGGAAAGAA+AGG - chr3_2:21195014-21195033 None:intergenic 35.0%
TTCTTTCCCTTATCTTTCCA+TGG + chr3_2:21195014-21195033 Msa0398990:intron 35.0%
TTGGATCCATGGAAAGATAA+GGG - chr3_2:21195023-21195042 None:intergenic 35.0%
TTTGGATCCATGGAAAGATA+AGG - chr3_2:21195024-21195043 None:intergenic 35.0%
TTCAAAGAAGTGAGTCACTA+AGG - chr3_2:21195539-21195558 None:intergenic 35.0%
TCAGCAACACTATTGGAATA+TGG - chr3_2:21195562-21195581 None:intergenic 35.0%
!!! CACTTGACTTCTTTTTTGGA+TGG + chr3_2:21195602-21195621 Msa0398990:CDS 35.0%
TTTGCTCATCCCATTACATA+TGG + chr3_2:21196008-21196027 Msa0398990:CDS 35.0%
! GGATAATGGCCATATGTAAT+GGG - chr3_2:21196020-21196039 None:intergenic 35.0%
ACTGCTTTGTGCATAATATG+TGG - chr3_2:21196147-21196166 None:intergenic 35.0%
TGCACCAAAAAATGTCGAAA+TGG + chr3_2:21196166-21196185 Msa0398990:CDS 35.0%
! TTGATCACAGCATTGAAGAA+TGG + chr3_2:21196314-21196333 Msa0398990:intron 35.0%
TTGAAGAATGGTGTATCCAT+TGG + chr3_2:21196326-21196345 Msa0398990:CDS 35.0%
ACAAGATCATGAATTCCCTT+TGG - chr3_2:21196706-21196725 None:intergenic 35.0%
! TTTTCAGTAATGTACACTGG+TGG - chr3_2:21196757-21196776 None:intergenic 35.0%
! CCATTTTCAGTAATGTACAC+TGG - chr3_2:21196760-21196779 None:intergenic 35.0%
CCAGTGTACATTACTGAAAA+TGG + chr3_2:21196757-21196776 Msa0398990:CDS 35.0%
! TTTCAGGCATTGCTACATAT+AGG + chr3_2:21196893-21196912 Msa0398990:intron 35.0%
TAGCTCGTAAAGATGGTATT+AGG + chr3_2:21196938-21196957 Msa0398990:CDS 35.0%
CATACTTTATTCCTTCAAGG+AGG - chr3_2:21196993-21197012 None:intergenic 35.0%
TAAAGTCACACACAACTATG+AGG - chr3_2:21197375-21197394 None:intergenic 35.0%
! GTGTGTGACTTTAATTTCAG+TGG + chr3_2:21197382-21197401 Msa0398990:intron 35.0%
! ATTTTCCGACAGCTATGAAT+GGG + chr3_2:21197737-21197756 Msa0398990:CDS 35.0%
!!! TTTTGAGTTTTCCCTTGAGA+AGG - chr3_2:21197860-21197879 None:intergenic 35.0%
TCATTCTCTAGCAACTTAAG+GGG + chr3_2:21198052-21198071 Msa0398990:three_prime_UTR 35.0%
TGGAACTGAACCACAAAAAG+TGG + chr3_2:21191379-21191398 Msa0398990:CDS 40.0%
!!! TGACTTGGTTCCACTTTTTG+TGG - chr3_2:21191392-21191411 None:intergenic 40.0%
! AATTGGTTCTTCTGCTTACC+AGG + chr3_2:21191460-21191479 Msa0398990:CDS 40.0%
TGCTAATGCTAGCTATATGG+TGG - chr3_2:21191525-21191544 None:intergenic 40.0%
! GTTTTTGATGTCTCTACGAC+AGG - chr3_2:21191810-21191829 None:intergenic 40.0%
CAACATAGGCAGTAACATCA+AGG - chr3_2:21191840-21191859 None:intergenic 40.0%
ATAAGAACCATTCGCGCAAA+AGG + chr3_2:21191915-21191934 Msa0398990:intron 40.0%
! CGCAAAAGGTGTGTTTCAAA+TGG + chr3_2:21191929-21191948 Msa0398990:intron 40.0%
CTAAACTTCATTCTTCGTGG+TGG - chr3_2:21192053-21192072 None:intergenic 40.0%
!!! ATGCTTACTTTTTCTCCAGC+TGG - chr3_2:21192178-21192197 None:intergenic 40.0%
AAGGAGCCTCAGATATAGAT+GGG + chr3_2:21192223-21192242 Msa0398990:CDS 40.0%
GTGAATGTGTCCCATATACT+TGG - chr3_2:21192255-21192274 None:intergenic 40.0%
TTACCGGTGAAACTCATACA+CGG + chr3_2:21192347-21192366 Msa0398990:intron 40.0%
TTACCGTGTATGAGTTTCAC+CGG - chr3_2:21192353-21192372 None:intergenic 40.0%
CCTCATAACACAACCCAAAT+AGG - chr3_2:21192454-21192473 None:intergenic 40.0%
!! CCTATTTGGGTTGTGTTATG+AGG + chr3_2:21192451-21192470 Msa0398990:intron 40.0%
CAATTTCTTTCACCACCTTG+AGG - chr3_2:21192769-21192788 None:intergenic 40.0%
CTCAAGGTGGTGAAAGAAAT+TGG + chr3_2:21192767-21192786 Msa0398990:CDS 40.0%
GGTGGTGAAAGAAATTGGTT+TGG + chr3_2:21192772-21192791 Msa0398990:CDS 40.0%
CATACAGATTCTCCATCTCA+TGG + chr3_2:21192798-21192817 Msa0398990:CDS 40.0%
ATATCATATGCAGAGGGCAA+GGG + chr3_2:21193089-21193108 Msa0398990:intron 40.0%
CATTATAATATGCAGGGTCG+GGG - chr3_2:21193529-21193548 None:intergenic 40.0%
CTTGTGATGATAGCTCAGTT+AGG - chr3_2:21193562-21193581 None:intergenic 40.0%
CTTGAAGCAAAAGTCAGCAT+AGG - chr3_2:21193645-21193664 None:intergenic 40.0%
GCTTCAAGACATTTGGAGAT+AGG + chr3_2:21193657-21193676 Msa0398990:CDS 40.0%
TTGGAGATAGGGTTAAGCAT+TGG + chr3_2:21193669-21193688 Msa0398990:CDS 40.0%
TGGAGATAGGGTTAAGCATT+GGG + chr3_2:21193670-21193689 Msa0398990:CDS 40.0%
TTCCTTAACATGTGCCCTTA+GGG + chr3_2:21194267-21194286 Msa0398990:intron 40.0%
ATCATCCAAACAGACCCTAA+GGG - chr3_2:21194284-21194303 None:intergenic 40.0%
!!! TTGCGGAAAGTTTTTGAGTG+TGG + chr3_2:21194900-21194919 Msa0398990:intron 40.0%
!!! TGCGGAAAGTTTTTGAGTGT+GGG + chr3_2:21194901-21194920 Msa0398990:intron 40.0%
TGTTTGGCAGGACAAAGAAA+GGG - chr3_2:21194953-21194972 None:intergenic 40.0%
GAAAGGATAGGGAAAGAAAG+TGG - chr3_2:21194997-21195016 None:intergenic 40.0%
CACAACTGCAAAGTGAGATT+AGG - chr3_2:21195345-21195364 None:intergenic 40.0%
!!! CGAGCACTTGACTTCTTTTT+TGG + chr3_2:21195598-21195617 Msa0398990:CDS 40.0%
! TCCACGTGTAGTTAGTTTCA+TGG - chr3_2:21195900-21195919 None:intergenic 40.0%
! GGGATAATGGCCATATGTAA+TGG - chr3_2:21196021-21196040 None:intergenic 40.0%
!! TTGTGCAGACTGATTTGACT+TGG + chr3_2:21196668-21196687 Msa0398990:intron 40.0%
!! TTGGCTCTATGTCTATCCAA+AGG + chr3_2:21196687-21196706 Msa0398990:CDS 40.0%
! TGGCTCTATGTCTATCCAAA+GGG + chr3_2:21196688-21196707 Msa0398990:CDS 40.0%
TCTTTACGAGCTACATTGAC+TGG - chr3_2:21196931-21196950 None:intergenic 40.0%
GTCAATGTAGCTCGTAAAGA+TGG + chr3_2:21196931-21196950 Msa0398990:CDS 40.0%
TTATTCCTTCAAGGAGGTAG+TGG - chr3_2:21196987-21197006 None:intergenic 40.0%
TGGTAAATGCCGAAATTGCA+AGG + chr3_2:21197317-21197336 Msa0398990:intron 40.0%
AGACATGGTGCAAATGTGAA+GGG + chr3_2:21197699-21197718 Msa0398990:intron 40.0%
! CATTTTCCGACAGCTATGAA+TGG + chr3_2:21197736-21197755 Msa0398990:CDS 40.0%
!! ATCCCAAGTACTCTGCTTTT+TGG + chr3_2:21197823-21197842 Msa0398990:CDS 40.0%
! AGCCAAAAAGCAGAGTACTT+GGG - chr3_2:21197828-21197847 None:intergenic 40.0%
CTGCAAAAGTTCCTTCTCAA+GGG + chr3_2:21197846-21197865 Msa0398990:CDS 40.0%
CATTCTCTAGCAACTTAAGG+GGG + chr3_2:21198053-21198072 Msa0398990:three_prime_UTR 40.0%
ATTCTCTAGCAACTTAAGGG+GGG + chr3_2:21198054-21198073 Msa0398990:three_prime_UTR 40.0%
TTTGCAGCCATGAGAGCTAT+AGG + chr3_2:21191305-21191324 Msa0398990:exon 45.0%
TCCAGTGACAACAGCCAAAA+GGG - chr3_2:21191363-21191382 None:intergenic 45.0%
TTCCAGTGACAACAGCCAAA+AGG - chr3_2:21191364-21191383 None:intergenic 45.0%
! AAACACACCTTTTGCGCGAA+TGG - chr3_2:21191925-21191944 None:intergenic 45.0%
TCATTCTTCGTGGTGGTTGA+AGG - chr3_2:21192046-21192065 None:intergenic 45.0%
GGCTCCTTCTACCTGAAAAA+TGG - chr3_2:21192211-21192230 None:intergenic 45.0%
GAAGGAGCCTCAGATATAGA+TGG + chr3_2:21192222-21192241 Msa0398990:CDS 45.0%
AGCCTCAGATATAGATGGGA+GGG + chr3_2:21192227-21192246 Msa0398990:CDS 45.0%
! AAGATTTGGGACCATAGCAG+TGG + chr3_2:21192593-21192612 Msa0398990:CDS 45.0%
! GACCATAGCAGTGGTAATGT+AGG + chr3_2:21192602-21192621 Msa0398990:CDS 45.0%
CTCCTACATTACCACTGCTA+TGG - chr3_2:21192607-21192626 None:intergenic 45.0%
TTTGTAGGAAGACCTCAAGG+TGG + chr3_2:21192754-21192773 Msa0398990:intron 45.0%
GATATCATATGCAGAGGGCA+AGG + chr3_2:21193088-21193107 Msa0398990:intron 45.0%
TATCATATGCAGAGGGCAAG+GGG + chr3_2:21193090-21193109 Msa0398990:intron 45.0%
!!! TTTTTGGCTTACATGGTGGC+AGG + chr3_2:21193263-21193282 Msa0398990:intron 45.0%
! AATGGTGGTACTTTTGCACC+TGG + chr3_2:21193734-21193753 Msa0398990:CDS 45.0%
GTTCCTTAACATGTGCCCTT+AGG + chr3_2:21194266-21194285 Msa0398990:intron 45.0%
GATCATCCAAACAGACCCTA+AGG - chr3_2:21194285-21194304 None:intergenic 45.0%
CACAATGCAAATACTCCCTC+TGG + chr3_2:21194665-21194684 Msa0398990:intron 45.0%
CTGTTTGGCAGGACAAAGAA+AGG - chr3_2:21194954-21194973 None:intergenic 45.0%
TTCTTTGTCCTGCCAAACAG+TGG + chr3_2:21194954-21194973 Msa0398990:intron 45.0%
! GTACTTTTCCACTGTTTGGC+AGG - chr3_2:21194965-21194984 None:intergenic 45.0%
GGATAGGGAAAGAAAGTGGA+TGG - chr3_2:21194993-21195012 None:intergenic 45.0%
TTAGGGTACGTTTGGATCCA+TGG - chr3_2:21195034-21195053 None:intergenic 45.0%
ATGGATCCAAACGTACCCTA+AGG + chr3_2:21195033-21195052 Msa0398990:intron 45.0%
TGGATCCAAACGTACCCTAA+GGG + chr3_2:21195034-21195053 Msa0398990:intron 45.0%
TTATGCCCTTAGGGTACGTT+TGG - chr3_2:21195042-21195061 None:intergenic 45.0%
GTTGCTGATAAAAAGGCTGC+AGG + chr3_2:21195574-21195593 Msa0398990:CDS 45.0%
! TTAAACGGGGTGCTTACAAG+TGG + chr3_2:21195742-21195761 Msa0398990:intron 45.0%
! TAAACGGGGTGCTTACAAGT+GGG + chr3_2:21195743-21195762 Msa0398990:intron 45.0%
GCCATGAAACTAACTACACG+TGG + chr3_2:21195896-21195915 Msa0398990:intron 45.0%
! TGTAATGGGATGAGCAAACC+TGG - chr3_2:21196006-21196025 None:intergenic 45.0%
AAATCATACCGAGGGACCAA+TGG - chr3_2:21196345-21196364 None:intergenic 45.0%
!! GGTAGTGGAGATGGTCATTA+TGG - chr3_2:21196972-21196991 None:intergenic 45.0%
TCTAGAAGTCCTAGCACAAC+TGG + chr3_2:21197297-21197316 Msa0398990:intron 45.0%
AAATGCCGAAATTGCAAGGC+CGG + chr3_2:21197321-21197340 Msa0398990:intron 45.0%
ACACACAACTATGAGGTCTC+AGG - chr3_2:21197368-21197387 None:intergenic 45.0%
GCACCATGTCTGCAACAAAA+GGG - chr3_2:21197690-21197709 None:intergenic 45.0%
TGCACCATGTCTGCAACAAA+AGG - chr3_2:21197691-21197710 None:intergenic 45.0%
CAGACATGGTGCAAATGTGA+AGG + chr3_2:21197698-21197717 Msa0398990:intron 45.0%
ATGTGAAGGGCTACTATGCA+TGG + chr3_2:21197712-21197731 Msa0398990:CDS 45.0%
TGCATCCCATTCATAGCTGT+CGG - chr3_2:21197745-21197764 None:intergenic 45.0%
ACAGCTATGAATGGGATGCA+GGG + chr3_2:21197745-21197764 Msa0398990:CDS 45.0%
! CAGCCAAAAAGCAGAGTACT+TGG - chr3_2:21197829-21197848 None:intergenic 45.0%
GCTGCAAAAGTTCCTTCTCA+AGG + chr3_2:21197845-21197864 Msa0398990:CDS 45.0%
!!! TTATTTTAGATTTTAATTTT+TGG - chr3_2:21192012-21192031 None:intergenic 5.0%
!!! AAATTTAATTCTTTTTATTA+AGG - chr3_2:21192550-21192569 None:intergenic 5.0%
!! TAAATAATAAATATATTGAA+AGG + chr3_2:21192705-21192724 Msa0398990:intron 5.0%
!! TAAACTTATTATTAATTTAA+TGG + chr3_2:21193596-21193615 Msa0398990:intron 5.0%
!!! AATTTAAGTATTTTTTTTTA+AGG + chr3_2:21194555-21194574 Msa0398990:intron 5.0%
!! TCATTTAAAAATAAAAAAAT+CGG - chr3_2:21195806-21195825 None:intergenic 5.0%
!! TATATACAATATTATATTTA+TGG - chr3_2:21196568-21196587 None:intergenic 5.0%
GGAAGGACCTATAGCTCTCA+TGG - chr3_2:21191315-21191334 None:intergenic 50.0%
!! ACCCTTTTGGCTGTTGTCAC+TGG + chr3_2:21191359-21191378 Msa0398990:CDS 50.0%
GAGCCTCAGATATAGATGGG+AGG + chr3_2:21192226-21192245 Msa0398990:CDS 50.0%
GCCTCAGATATAGATGGGAG+GGG + chr3_2:21192228-21192247 Msa0398990:CDS 50.0%
TCCCCTCCCATCTATATCTG+AGG - chr3_2:21192232-21192251 None:intergenic 50.0%
ATGGGAGGGGACCAAGTATA+TGG + chr3_2:21192241-21192260 Msa0398990:CDS 50.0%
TGGGAGGGGACCAAGTATAT+GGG + chr3_2:21192242-21192261 Msa0398990:CDS 50.0%
ATCATATGCAGAGGGCAAGG+GGG + chr3_2:21193091-21193110 Msa0398990:intron 50.0%
! GACCCTAAGGGCACATGTTA+AGG - chr3_2:21194272-21194291 None:intergenic 50.0%
ATGTGCCCTTAGGGTCTGTT+TGG + chr3_2:21194276-21194295 Msa0398990:intron 50.0%
AGCACAACGACGGTAACAAG+TGG - chr3_2:21194881-21194900 None:intergenic 50.0%
TGTTACCGTCGTTGTGCTTG+CGG + chr3_2:21194883-21194902 Msa0398990:intron 50.0%
ACTTTCCGCAAGCACAACGA+CGG - chr3_2:21194891-21194910 None:intergenic 50.0%
TGGCAGGACAAAGAAAGGGT+AGG - chr3_2:21194949-21194968 None:intergenic 50.0%
TGGTGTATCCATTGGTCCCT+CGG + chr3_2:21196334-21196353 Msa0398990:CDS 50.0%
!! CTTCAAGGAGGTAGTGGAGA+TGG - chr3_2:21196981-21197000 None:intergenic 50.0%
CATCTCCACTACCTCCTTGA+AGG + chr3_2:21196979-21196998 Msa0398990:CDS 50.0%
CGGCATTTACCAGTTGTGCT+AGG - chr3_2:21197309-21197328 None:intergenic 50.0%
! GGTCCCTTTTGTTGCAGACA+TGG + chr3_2:21197684-21197703 Msa0398990:intron 50.0%
GACAGCTATGAATGGGATGC+AGG + chr3_2:21197744-21197763 Msa0398990:CDS 50.0%
GCAGGGTACACAGTACGATT+TGG + chr3_2:21197762-21197781 Msa0398990:CDS 50.0%
CTAGCAACTTAAGGGGGGTA+TGG + chr3_2:21198059-21198078 Msa0398990:three_prime_UTR 50.0%
AAGGGGGCAGTCAATCCCTT+AGG + chr3_2:21193107-21193126 Msa0398990:CDS 55.0%
GACGTCCGGCCTTGCAATTT+CGG - chr3_2:21197329-21197348 None:intergenic 55.0%
GAGGTCTCAGGTTCGAACTC+AGG - chr3_2:21197356-21197375 None:intergenic 55.0%
! GCAACTTAAGGGGGGTATGG+TGG + chr3_2:21198062-21198081 Msa0398990:three_prime_UTR 55.0%
CAGGGTCGGGGTTCGAACAT+CGG - chr3_2:21193517-21193536 None:intergenic 60.0%
! ACGGGGTGCTTACAAGTGGG+CGG + chr3_2:21195746-21195765 Msa0398990:intron 60.0%
CGAACTCAGGTCACGACGTC+CGG - chr3_2:21197343-21197362 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 21191298 21198112 21191298 ID=Msa0398990;Name=Msa0398990
chr3_2 mRNA 21191298 21198112 21191298 ID=Msa0398990-mRNA-1;Parent=Msa0398990;Name=Msa0398990-mRNA-1;_AED=0.12;_eAED=0.12;_QI=16|1|1|1|1|1|13|228|514
chr3_2 exon 21191298 21191481 21191298 ID=Msa0398990-mRNA-1:exon:4640;Parent=Msa0398990-mRNA-1
chr3_2 exon 21192219 21192288 21192219 ID=Msa0398990-mRNA-1:exon:4641;Parent=Msa0398990-mRNA-1
chr3_2 exon 21192591 21192649 21192591 ID=Msa0398990-mRNA-1:exon:4642;Parent=Msa0398990-mRNA-1
chr3_2 exon 21192761 21192836 21192761 ID=Msa0398990-mRNA-1:exon:4643;Parent=Msa0398990-mRNA-1
chr3_2 exon 21193102 21193173 21193102 ID=Msa0398990-mRNA-1:exon:4644;Parent=Msa0398990-mRNA-1
chr3_2 exon 21193285 21193372 21193285 ID=Msa0398990-mRNA-1:exon:4645;Parent=Msa0398990-mRNA-1
chr3_2 exon 21193628 21193880 21193628 ID=Msa0398990-mRNA-1:exon:4646;Parent=Msa0398990-mRNA-1
chr3_2 exon 21195508 21195623 21195508 ID=Msa0398990-mRNA-1:exon:4647;Parent=Msa0398990-mRNA-1
chr3_2 exon 21196007 21196221 21196007 ID=Msa0398990-mRNA-1:exon:4648;Parent=Msa0398990-mRNA-1
chr3_2 exon 21196324 21196355 21196324 ID=Msa0398990-mRNA-1:exon:4649;Parent=Msa0398990-mRNA-1
chr3_2 exon 21196676 21196778 21196676 ID=Msa0398990-mRNA-1:exon:4650;Parent=Msa0398990-mRNA-1
chr3_2 exon 21196899 21197007 21196899 ID=Msa0398990-mRNA-1:exon:4651;Parent=Msa0398990-mRNA-1
chr3_2 exon 21197701 21198112 21197701 ID=Msa0398990-mRNA-1:exon:4652;Parent=Msa0398990-mRNA-1
chr3_2 five_prime_UTR 21191298 21191313 21191298 ID=Msa0398990-mRNA-1:five_prime_utr;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21191314 21191481 21191314 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21192219 21192288 21192219 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21192591 21192649 21192591 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21192761 21192836 21192761 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21193102 21193173 21193102 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21193285 21193372 21193285 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21193628 21193880 21193628 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21195508 21195623 21195508 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21196007 21196221 21196007 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21196324 21196355 21196324 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21196676 21196778 21196676 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21196899 21197007 21196899 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 CDS 21197701 21197884 21197701 ID=Msa0398990-mRNA-1:cds;Parent=Msa0398990-mRNA-1
chr3_2 three_prime_UTR 21197885 21198112 21197885 ID=Msa0398990-mRNA-1:three_prime_utr;Parent=Msa0398990-mRNA-1
Gene Sequence

>Msa0398990

ATGAGAGCTATAGGTCCTTCCCTTCTCTATCTTTTTTCTCTAGCTACCCTTTTGGCTGTTGTCACTGGAACTGAACCACAAAAAGTGGAACCAAGTCAATATGCTTCATTCAATAGGAGCCTTTTTCCTCATGATTTTCTCTTTGGAATTGGTTCTTCTGCTTACCAGGTAGAAGGAGCCTCAGATATAGATGGGAGGGGACCAAGTATATGGGACACATTCACTAAACAAAATCCAGATAAGATTTGGGACCATAGCAGTGGTAATGTAGGAGCTGATTTTTATCATCGATACAAGGAAGACCTCAAGGTGGTGAAAGAAATTGGTTTGGACTCATACAGATTCTCCATCTCATGGTCAAGAATATTCCCAAAGGGCAAGGGGGCAGTCAATCCCTTAGGAGTTAAATTCTATAACAATCTCATTAATGAGATCCTAGCAAATGGCTTAGTACCCTTTGTAACTCTCTTTCATTGGGATCTCCCACAAGCTCTTGAAGATGAATATAAGGGATTTCTAAGTAAAAATATAGCGAAGGATTTTGCAGCCTATGCTGACTTTTGCTTCAAGACATTTGGAGATAGGGTTAAGCATTGGGTGACACTTAATGAACCTTATTCATACACCATCAATGGATATAATGGTGGTACTTTTGCACCTGGTAGATGTTCTAAATATGTTGCAAATTGCACTACTGGTGACTCAAGTACAGAGCCCTACATTGTTGCTCATAACTTGATACTTTCTCATGCTGCTGCAGTCAGAGTATACAAGAGAAAATATCAGGCTCATCAAAAAGGAAAAATTGGAGTGACCTTAGTGACTCACTTCTTTGAACCATATTCCAATAGTGTTGCTGATAAAAAGGCTGCAGGTCGAGCACTTGACTTCTTTTTTGGATGGTTTGCTCATCCCATTACATATGGCCATTATCCCCAAATTATGATATCTTTGTTGGGTAAAAGACTCCCCAAATTCACAAAACTAGAATCTGTAATTATCAAAGATTCCTATGATTTTCTTGGTGTGAATTATTACTCCACATATTATGCACAAAGCAGTGCACCAAAAAATGTCGAAATGGACTACTACTCTGATATGCAAGCAACTGTCTCTCCATTGAAGAATGGTGTATCCATTGGTCCCTCGACTGATTTGACTTGGCTCTATGTCTATCCAAAGGGAATTCATGATCTTGTTACACACATAAAAAATGTATACAAGAATCCACCAGTGTACATTACTGAAAATGGCATTGCTACATATAGGAATGACTCAATTCCAGTCAATGTAGCTCGTAAAGATGGTATTAGGATTAAATACCATAATGACCATCTCCACTACCTCCTTGAAGGAATAAAACATGGTGCAAATGTGAAGGGCTACTATGCATGGTCATTTTCCGACAGCTATGAATGGGATGCAGGGTACACAGTACGATTTGGAATAATTTATGTAGATTTCGTTAACAATTTGAAAAGATATCCCAAGTACTCTGCTTTTTGGCTGCAAAAGTTCCTTCTCAAGGGAAAACTCAAAATTTGA

Protein sequence

>Msa0398990

MRAIGPSLLYLFSLATLLAVVTGTEPQKVEPSQYASFNRSLFPHDFLFGIGSSAYQVEGASDIDGRGPSIWDTFTKQNPDKIWDHSSGNVGADFYHRYKEDLKVVKEIGLDSYRFSISWSRIFPKGKGAVNPLGVKFYNNLINEILANGLVPFVTLFHWDLPQALEDEYKGFLSKNIAKDFAAYADFCFKTFGDRVKHWVTLNEPYSYTINGYNGGTFAPGRCSKYVANCTTGDSSTEPYIVAHNLILSHAAAVRVYKRKYQAHQKGKIGVTLVTHFFEPYSNSVADKKAAGRALDFFFGWFAHPITYGHYPQIMISLLGKRLPKFTKLESVIIKDSYDFLGVNYYSTYYAQSSAPKNVEMDYYSDMQATVSPLKNGVSIGPSTDLTWLYVYPKGIHDLVTHIKNVYKNPPVYITENGIATYRNDSIPVNVARKDGIRIKYHNDHLHYLLEGIKHGANVKGYYAWSFSDSYEWDAGYTVRFGIIYVDFVNNLKRYPKYSAFWLQKFLLKGKLKI*