AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0457750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0457750 MtrunA17_Chr3g0087261 96.078 510 20 0 14 523 1 510 0.0 1016
Msa0457750 MtrunA17_Chr3g0087271 82.387 511 89 1 14 523 1 511 0.0 862
Msa0457750 MtrunA17_Chr6g0482131 56.367 479 203 4 49 522 35 512 0.0 571
Msa0457750 MtrunA17_Chr4g0033311 54.688 512 222 6 20 522 5 515 0.0 566
Msa0457750 MtrunA17_Chr2g0329201 54.871 503 220 5 26 522 6 507 0.0 563
Msa0457750 MtrunA17_Chr4g0033321 54.653 505 221 5 23 520 4 507 0.0 558
Msa0457750 MtrunA17_Chr6g0482081 54.617 509 222 5 20 520 4 511 0.0 553
Msa0457750 MtrunA17_Chr4g0033401 54.545 506 221 5 23 520 4 508 0.0 553
Msa0457750 MtrunA17_Chr4g0033201 51.072 513 243 5 17 522 1 512 0.0 552
Msa0457750 MtrunA17_Chr3g0088441 54.314 510 224 6 21 522 6 514 0.0 551
Msa0457750 MtrunA17_Chr2g0329191 55.021 478 212 3 48 522 32 509 0.0 549
Msa0457750 MtrunA17_Chr4g0033341 53.981 515 226 7 14 522 34 543 0.0 548
Msa0457750 MtrunA17_Chr4g0033271 51.946 514 239 5 14 522 1 511 0.0 544
Msa0457750 MtrunA17_Chr4g0033331 54.564 493 218 4 33 520 22 513 0.0 543
Msa0457750 MtrunA17_Chr6g0482071 53.057 507 226 6 21 522 14 513 0.0 541
Msa0457750 MtrunA17_Chr4g0033191 52.697 482 222 4 46 522 39 519 0.0 540
Msa0457750 MtrunA17_Chr4g0010501 53.249 477 217 2 48 522 22 494 0.0 536
Msa0457750 MtrunA17_Chr2g0329321 50.297 505 219 5 21 522 13 488 5.25e-179 512
Msa0457750 MtrunA17_Chr4g0033261 48.431 510 230 4 21 522 9 493 5.08e-174 499
Msa0457750 MtrunA17_Chr4g0043091 47.791 498 253 4 27 520 7 501 2.15e-173 498
Msa0457750 MtrunA17_Chr6g0482941 49.901 503 245 6 22 522 15 512 2.08e-171 494
Msa0457750 MtrunA17_Chr6g0482951 49.702 503 246 6 22 522 15 512 1.02e-170 492
Msa0457750 MtrunA17_Chr4g0033231 48.441 481 218 3 47 522 38 493 3.67e-168 485
Msa0457750 MtrunA17_Chr5g0430451 48.932 515 226 5 21 522 8 498 1.76e-163 473
Msa0457750 MtrunA17_Chr4g0042171 47.799 477 243 4 49 520 23 498 3.27e-160 465
Msa0457750 MtrunA17_Chr3g0090131 45.455 484 249 6 43 523 14 485 1.57e-155 452
Msa0457750 MtrunA17_Chr4g0074561 46.947 475 241 5 55 521 40 511 4.47e-153 447
Msa0457750 MtrunA17_Chr7g0242691 45.562 507 252 9 20 522 9 495 3.84e-152 445
Msa0457750 MtrunA17_Chr3g0090111 44.304 474 252 4 51 523 20 482 5.86e-152 443
Msa0457750 MtrunA17_Chr4g0006111 45.714 490 224 6 48 522 63 525 3.25e-149 437
Msa0457750 MtrunA17_Chr2g0288071 45.168 507 266 5 20 522 44 542 1.71e-148 437
Msa0457750 MtrunA17_Chr2g0317841 44.654 477 255 5 49 520 31 503 8.50e-148 434
Msa0457750 MtrunA17_Chr2g0288021 45.798 476 252 4 49 520 34 507 9.81e-148 434
Msa0457750 MtrunA17_Chr4g0006131 46.746 507 222 10 32 520 23 499 1.30e-147 433
Msa0457750 MtrunA17_Chr4g0006971 44.748 476 247 7 49 520 26 489 1.55e-147 433
Msa0457750 MtrunA17_Chr2g0317821 44.211 475 260 4 49 520 31 503 9.65e-147 431
Msa0457750 MtrunA17_Chr4g0074551 44.618 511 269 5 16 522 24 524 7.18e-146 430
Msa0457750 MtrunA17_Chr7g0242681 45.756 483 240 11 44 520 33 499 5.40e-145 427
Msa0457750 MtrunA17_Chr1g0195611 43.933 478 244 8 50 520 27 487 6.43e-137 405
Msa0457750 MtrunA17_Chr5g0428831 42.376 505 260 9 22 520 9 488 1.67e-135 402
Msa0457750 MtrunA17_Chr2g0301231 48.565 418 176 7 118 522 1 392 2.52e-128 379
Msa0457750 MtrunA17_Chr1g0195641 45.063 395 200 5 49 437 26 409 4.50e-118 354
Msa0457750 MtrunA17_Chr5g0418871 50.595 336 161 3 71 402 4 338 1.52e-117 350
Msa0457750 MtrunA17_Chr3g0087201 49.697 330 161 2 192 520 17 342 2.60e-117 349
Msa0457750 MtrunA17_Chr7g0234091 40.842 475 261 7 51 522 76 533 4.14e-110 338
Msa0457750 MtrunA17_Chr7g0234111 41.053 475 256 7 51 520 76 531 6.99e-109 335
Msa0457750 MtrunA17_Chr7g0234131 40.632 475 259 8 51 520 76 532 4.71e-108 332
Msa0457750 MtrunA17_Chr7g0230651 43.175 359 184 6 106 460 27 369 1.34e-92 287
Msa0457750 MtrunA17_Chr3g0087191 65.517 145 48 1 48 190 20 164 1.91e-62 202
Msa0457750 MtrunA17_Chr7g0227561 39.474 266 129 4 52 316 48 282 6.77e-59 197
Msa0457750 MtrunA17_Chr7g0236731 44.538 238 116 3 140 371 31 258 8.08e-54 183
Msa0457750 MtrunA17_Chr4g0068871 27.098 417 233 10 114 523 183 535 5.59e-30 124
Msa0457750 MtrunA17_Chr8g0352881 45.631 103 55 1 273 375 57 158 1.34e-22 94.4
Msa0457750 MtrunA17_Chr5g0418861 51.807 83 39 1 439 520 8 90 2.00e-22 91.7
Msa0457750 MtrunA17_Chr2g0288031 54.237 59 27 0 201 259 5 63 1.41e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0457750 AT2G44480.1 54.622 476 213 2 48 520 33 508 0.0 558
Msa0457750 AT2G44480.3 54.622 476 213 2 48 520 64 539 0.0 558
Msa0457750 AT2G44450.1 51.983 479 223 3 45 520 26 500 1.27e-179 514
Msa0457750 AT5G44640.1 49.800 500 243 4 25 520 6 501 3.15e-179 514
Msa0457750 AT5G42260.1 50.403 496 238 4 25 516 6 497 4.65e-178 511
Msa0457750 AT3G60130.1 51.546 485 222 7 45 523 25 502 3.83e-172 496
Msa0457750 AT1G26560.1 50.000 478 233 4 48 520 30 506 2.27e-169 489
Msa0457750 AT5G54570.1 49.476 477 236 3 49 520 29 505 1.07e-166 483
Msa0457750 AT2G25630.1 47.475 495 235 5 30 520 10 483 1.48e-165 478
Msa0457750 AT3G18080.1 49.269 479 233 5 48 522 37 509 1.85e-164 476
Msa0457750 AT2G44480.2 53.448 406 186 2 118 520 1 406 4.57e-163 469
Msa0457750 AT3G18070.1 47.619 483 241 6 44 522 24 498 1.32e-160 466
Msa0457750 AT3G18070.3 47.412 483 236 6 44 522 24 492 2.17e-160 465
Msa0457750 AT5G24550.1 47.609 481 243 7 50 522 32 511 1.08e-158 462
Msa0457750 AT1G47600.2 46.371 496 248 8 34 522 26 510 3.24e-155 452
Msa0457750 AT1G47600.1 46.573 496 248 9 34 522 26 511 2.91e-154 450
Msa0457750 AT1G61820.1 46.862 478 248 4 48 520 28 504 4.65e-154 450
Msa0457750 AT3G60140.1 46.778 481 248 6 49 522 25 504 6.87e-154 452
Msa0457750 AT1G51470.1 46.371 496 249 9 34 522 26 511 6.57e-152 444
Msa0457750 AT5G24540.1 47.817 481 242 7 50 522 32 511 9.92e-151 442
Msa0457750 AT2G32860.2 47.257 474 241 7 55 520 99 571 1.44e-149 442
Msa0457750 AT5G25980.2 46.094 512 254 12 25 520 17 522 2.67e-148 436
Msa0457750 AT3G60120.1 45.979 485 253 8 45 522 9 491 8.35e-148 435
Msa0457750 AT2G44470.3 44.112 501 271 8 30 522 8 507 1.10e-147 436
Msa0457750 AT2G32860.1 46.934 473 243 7 55 520 99 570 1.64e-147 437
Msa0457750 AT1G02850.2 44.842 475 243 6 50 520 26 485 2.99e-147 432
Msa0457750 AT5G26000.1 46.498 514 253 12 21 520 6 511 4.35e-145 428
Msa0457750 AT3G60130.2 51.435 418 190 7 112 523 40 450 4.44e-145 425
Msa0457750 AT1G61810.1 43.281 506 278 5 20 520 6 507 6.83e-144 424
Msa0457750 AT5G54570.3 48.700 423 213 2 49 467 29 451 9.73e-144 421
Msa0457750 AT1G02850.5 42.972 498 242 7 50 520 26 508 1.05e-142 421
Msa0457750 AT2G44490.1 43.992 491 262 9 40 520 5 492 1.62e-142 422
Msa0457750 AT5G36890.2 43.975 473 252 5 51 520 17 479 3.16e-142 419
Msa0457750 AT5G36890.1 43.975 473 252 5 51 520 17 479 5.86e-142 418
Msa0457750 AT5G54570.2 49.510 408 201 3 118 520 1 408 1.29e-141 415
Msa0457750 AT1G02850.4 42.886 499 242 8 50 520 26 509 6.60e-141 417
Msa0457750 AT4G21760.2 44.492 472 251 6 55 522 59 523 3.26e-140 416
Msa0457750 AT1G66280.1 43.836 511 274 9 21 523 8 513 1.02e-139 414
Msa0457750 AT4G27830.1 42.012 507 263 10 22 520 1 484 1.04e-139 413
Msa0457750 AT1G61810.3 44.805 462 249 4 51 507 34 494 1.16e-139 414
Msa0457750 AT2G44460.1 44.711 501 264 9 30 520 7 504 3.78e-139 414
Msa0457750 AT2G44480.4 61.538 312 117 2 48 357 64 374 1.82e-138 405
Msa0457750 AT3G60130.3 50.239 418 184 8 112 523 40 439 2.23e-137 405
Msa0457750 AT4G27820.1 44.167 480 241 8 49 520 22 482 2.62e-137 407
Msa0457750 AT1G66270.1 44.330 485 256 9 48 523 34 513 1.67e-136 405
Msa0457750 AT3G03640.1 43.883 515 264 10 22 522 11 514 2.94e-136 405
Msa0457750 AT3G21370.1 42.593 486 265 9 49 523 32 514 3.67e-136 405
Msa0457750 AT4G22100.1 43.882 474 248 6 51 520 23 482 3.74e-135 401
Msa0457750 AT1G02850.1 42.947 475 225 7 50 520 26 458 5.91e-135 399
Msa0457750 AT1G75940.1 44.033 486 258 9 50 523 37 520 7.22e-135 402
Msa0457750 AT3G09260.1 42.629 502 277 9 29 523 16 513 3.51e-134 399
Msa0457750 AT1G45191.6 43.983 482 243 8 50 520 29 494 6.41e-134 399
Msa0457750 AT1G66270.2 44.124 485 255 10 48 523 34 511 2.24e-133 397
Msa0457750 AT1G45191.4 43.542 480 237 8 50 520 29 483 4.12e-133 396
Msa0457750 AT1G45191.1 43.558 489 247 8 50 520 29 506 5.76e-133 397
Msa0457750 AT4G21760.1 43.432 472 246 7 55 522 59 513 6.65e-133 397
Msa0457750 AT1G45191.2 43.958 480 241 8 50 520 29 489 8.19e-133 395
Msa0457750 AT1G60090.2 43.933 478 242 8 50 520 24 482 3.29e-132 394
Msa0457750 AT1G60090.1 42.827 481 250 6 50 520 24 489 1.31e-131 392
Msa0457750 AT3G62750.2 40.344 523 269 11 4 520 14 499 8.40e-131 391
Msa0457750 AT3G62750.1 41.400 500 254 10 27 520 7 473 9.10e-131 390
Msa0457750 AT5G25980.3 45.295 457 230 10 25 467 17 467 1.22e-130 388
Msa0457750 AT5G25980.1 45.295 457 230 10 25 467 17 467 1.22e-130 388
Msa0457750 AT1G52400.3 41.860 516 274 10 21 520 10 515 2.63e-130 390
Msa0457750 AT1G52400.1 41.860 516 274 10 21 520 10 515 2.63e-130 390
Msa0457750 AT5G24540.2 47.642 424 214 6 50 466 32 454 3.05e-128 382
Msa0457750 AT5G28510.1 39.648 512 295 8 24 523 13 522 1.11e-126 380
Msa0457750 AT5G26000.2 45.752 459 229 10 21 467 6 456 1.67e-126 377
Msa0457750 AT2G44450.2 50.708 353 169 2 169 520 1 349 1.80e-124 369
Msa0457750 AT2G44470.1 42.793 444 246 7 30 466 8 450 3.89e-124 371
Msa0457750 AT1G02850.3 44.118 408 193 5 50 431 26 424 1.46e-121 364
Msa0457750 AT3G60140.2 46.272 389 202 5 49 431 25 412 3.53e-121 364
Msa0457750 AT1G61810.4 46.114 386 203 3 51 431 34 419 4.45e-121 362
Msa0457750 AT1G61810.5 44.444 405 219 4 121 520 4 407 6.64e-121 362
Msa0457750 AT3G62740.1 39.623 477 263 8 49 520 22 478 2.27e-119 361
Msa0457750 AT3G18070.4 50.000 344 163 4 44 383 24 362 3.62e-119 356
Msa0457750 AT3G62750.4 40.127 471 240 10 4 469 14 447 5.18e-116 351
Msa0457750 AT4G27830.2 42.195 410 216 7 118 520 1 396 3.66e-115 347
Msa0457750 AT4G27820.2 43.137 408 210 7 121 520 4 397 2.97e-111 337
Msa0457750 AT4G27820.3 43.137 408 210 7 121 520 4 397 2.97e-111 337
Msa0457750 AT1G61820.3 46.006 363 191 3 162 520 4 365 4.73e-111 335
Msa0457750 AT1G52400.2 40.998 461 247 9 21 466 10 460 7.95e-110 335
Msa0457750 AT2G44470.2 47.353 340 173 5 30 364 8 346 1.36e-109 332
Msa0457750 AT1G45191.3 45.902 366 178 4 50 405 29 384 1.92e-108 330
Msa0457750 AT1G45191.5 46.974 347 172 2 50 389 29 370 1.11e-107 327
Msa0457750 AT5G48375.1 41.319 455 199 9 34 485 22 411 1.33e-107 328
Msa0457750 AT3G62740.2 42.377 387 205 6 49 431 22 394 1.32e-106 325
Msa0457750 AT1G60270.1 46.647 343 176 2 50 389 24 362 4.41e-106 322
Msa0457750 AT2G44480.5 48.837 301 153 1 221 520 2 302 7.24e-105 317
Msa0457750 AT3G62750.7 43.127 371 186 5 27 392 7 357 1.33e-104 318
Msa0457750 AT3G62750.8 43.127 371 186 5 27 392 7 357 1.33e-104 318
Msa0457750 AT3G62750.6 40.831 409 215 8 118 520 1 388 5.61e-104 318
Msa0457750 AT3G62750.5 40.831 409 215 8 118 520 1 388 5.61e-104 318
Msa0457750 AT3G62750.3 42.742 372 189 5 18 384 23 375 1.43e-103 318
Msa0457750 AT3G18070.2 46.547 333 169 4 194 522 94 421 7.59e-102 313
Msa0457750 AT3G18070.2 52.174 69 32 1 44 112 24 91 5.97e-14 74.3
Msa0457750 AT2G44460.2 45.000 360 190 6 167 520 1 358 2.12e-94 294
Msa0457750 AT3G18070.7 46.178 314 160 4 213 522 1 309 2.61e-94 290
Msa0457750 AT1G61810.2 50.936 267 130 1 51 316 34 300 1.14e-93 288
Msa0457750 AT1G51490.1 44.509 346 167 9 58 394 28 357 3.82e-88 277
Msa0457750 AT1G60270.2 47.253 273 141 1 120 389 3 275 2.27e-84 263
Msa0457750 AT3G18070.5 47.737 243 121 2 194 432 94 334 7.70e-74 238
Msa0457750 AT3G18070.5 52.174 69 32 1 44 112 24 91 3.51e-14 74.3
Msa0457750 AT3G18070.6 47.321 224 112 2 213 432 1 222 1.37e-66 215
Msa0457750 AT5G16580.1 38.194 288 159 5 194 477 27 299 5.73e-57 192
Msa0457750 AT3G06510.1 26.869 428 234 13 107 523 153 512 7.49e-28 118
Msa0457750 AT3G06510.2 25.959 443 253 15 107 523 153 546 1.48e-24 108

Find 125 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACAAAGATATCATAATT+TGG 0.153192 3_3:-52850538 None:intergenic
GCCATTAAGCATTACATAAT+TGG 0.185949 3_3:-52852473 None:intergenic
ACCAATTATGTAATGCTTAA+TGG 0.213587 3_3:+52852472 Msa0457750:three_prime_UTR
GAATTCGGAGGTTAAGATTT+AGG 0.225852 3_3:+52852865 Msa0457750:three_prime_UTR
CCAGTGTACATTACTGAAAA+TGG 0.258317 3_3:+52851263 Msa0457750:CDS
CTCAAGGTGGTGAAAGAAAT+TGG 0.260524 3_3:+52847334 Msa0457750:CDS
AGAGAAAATCATGAGGAAAA+AGG 0.269873 3_3:-52845758 None:intergenic
TTTCATTCTCTAGCAACTTA+AGG 0.275153 3_3:+52852548 Msa0457750:three_prime_UTR
TTGGTTGAGCAGATAAGATT+TGG 0.275910 3_3:+52847146 Msa0457750:intron
AGCTCTTGAAGATGAATATA+AGG 0.279995 3_3:+52847894 Msa0457750:CDS
ATGGGAGGGGACCAAGTATA+TGG 0.281964 3_3:+52846808 Msa0457750:CDS
CAATAGTGTTGCTGATAAAA+AGG 0.286184 3_3:+52850064 Msa0457750:CDS
ATATCATAATTTGGGGATAA+TGG 0.289010 3_3:-52850529 None:intergenic
CAACAAAGATATCATAATTT+GGG 0.295754 3_3:-52850537 None:intergenic
TTCATATGTATTGAGATAAT+TGG 0.297420 3_3:+52852445 Msa0457750:three_prime_UTR
TCAGCAACACTATTGGAATA+TGG 0.298995 3_3:-52850056 None:intergenic
ATTTCATAGGCTCATCAAAA+AGG 0.305623 3_3:+52849996 Msa0457750:intron
CCAAATTATGATATCTTTGT+TGG 0.310176 3_3:+52850538 Msa0457750:CDS
AGATGTCACTACTTCATCTT+TGG 0.314923 3_3:+52845598 Msa0457750:exon
CCATTGATGGTGTATGAATA+AGG 0.315978 3_3:-52848349 None:intergenic
GGTAGTGGAGATGGTCATTA+TGG 0.318482 3_3:-52851475 None:intergenic
CCTTTGTAACTCTCTTTCAT+TGG 0.333579 3_3:+52847860 Msa0457750:CDS
GAAGGAGCCTCAGATATAGA+TGG 0.339718 3_3:+52846789 Msa0457750:CDS
GCTTCAAGACATTTGGAGAT+AGG 0.339805 3_3:+52848299 Msa0457750:CDS
ATATTCACAGCTTAATCATT+TGG 0.349400 3_3:+52852760 Msa0457750:three_prime_UTR
TTCATTCTCTAGCAACTTAA+GGG 0.349770 3_3:+52852549 Msa0457750:three_prime_UTR
TACACCATCAATGGATATAA+TGG 0.360639 3_3:+52848358 Msa0457750:CDS
CTTTGTAACTCTCTTTCATT+GGG 0.363734 3_3:+52847861 Msa0457750:CDS
TAGCTCGTAAAGATGGTATT+AGG 0.367113 3_3:+52851444 Msa0457750:CDS
ACTCATACTTTATTCCTTCA+AGG 0.387045 3_3:-52851499 None:intergenic
AATTGGTTCTTCTGCTTACC+AGG 0.392026 3_3:+52845785 Msa0457750:CDS
AGTATACAAGAGAAAATATC+AGG 0.393019 3_3:+52848501 Msa0457750:CDS
GTTATAGAATTTAACTCCTA+AGG 0.398406 3_3:-52847689 None:intergenic
GTCAATATGCTTCATTCAAT+AGG 0.402198 3_3:+52845733 Msa0457750:CDS
TGGAGATAGGGTTAAGCATT+GGG 0.413839 3_3:+52848312 Msa0457750:CDS
ATTCACACCAAGAAAATCAT+AGG 0.423764 3_3:-52850612 None:intergenic
GCAGGGTACACAGTACGATT+TGG 0.425268 3_3:+52852266 Msa0457750:CDS
AATATCGATAAATAAATTGT+TGG 0.428023 3_3:+52852515 Msa0457750:three_prime_UTR
CTTCAAGACATTTGGAGATA+GGG 0.430530 3_3:+52848300 Msa0457750:CDS
TGGTTGAGCAGATAAGATTT+GGG 0.433770 3_3:+52847147 Msa0457750:intron
TTTCAGGCATTGCTACATAT+AGG 0.439893 3_3:+52851399 Msa0457750:intron
CAAATTATGATATCTTTGTT+GGG 0.440379 3_3:+52850539 Msa0457750:CDS
TTTGCTCATCCCATTACATA+TGG 0.442795 3_3:+52850506 Msa0457750:CDS
TTGAAGAATGGTGTATCTAT+TGG 0.446784 3_3:+52850824 Msa0457750:CDS
GCTCTTGAAGATGAATATAA+GGG 0.448342 3_3:+52847895 Msa0457750:CDS
GGGATAATGGCCATATGTAA+TGG 0.452861 3_3:-52850516 None:intergenic
ACCACCATTATATCCATTGA+TGG 0.454476 3_3:-52848362 None:intergenic
ACAAGATCATGAATTCCCTT+TGG 0.455790 3_3:-52851209 None:intergenic
GGTGGTGAAAGAAATTGGTT+TGG 0.457204 3_3:+52847339 Msa0457750:CDS
TTATTCCTTCAAGGAGGTAG+TGG 0.457529 3_3:-52851490 None:intergenic
TTTGCAGCCATGGGAGCTAT+AGG 0.460190 3_3:+52845630 Msa0457750:CDS
CCTTATTCATACACCATCAA+TGG 0.460986 3_3:+52848349 Msa0457750:CDS
GACAGCTATGAATGGGATGC+AGG 0.461053 3_3:+52852248 Msa0457750:CDS
TTGGAGATAGGGTTAAGCAT+TGG 0.464172 3_3:+52848311 Msa0457750:CDS
GGATAATGGCCATATGTAAT+GGG 0.468368 3_3:-52850515 None:intergenic
GTCAATGTAGCTCGTAAAGA+TGG 0.471396 3_3:+52851437 Msa0457750:CDS
TCTTTACGAGCTACATTGAC+TGG 0.472609 3_3:-52851434 None:intergenic
GTGAATGTGTCCCATATACT+TGG 0.475650 3_3:-52846819 None:intergenic
CATCTCCACTACCTCCTTGA+AGG 0.477901 3_3:+52851485 Msa0457750:CDS
CAGAACTCATTAAGAAATCA+TGG 0.480797 3_3:+52845555 Msa0457750:five_prime_UTR
GACATCACAATTTGCAGCCA+TGG 0.481159 3_3:+52845620 Msa0457750:CDS
AAGTTAGGATTCAGTGGAAG+GGG 0.484637 3_3:+52852913 Msa0457750:three_prime_UTR
CAGAAACTAAAGGAGCATAT+AGG 0.484638 3_3:-52852797 None:intergenic
TTCCAGTGACAACAGCCAAA+AGG 0.487795 3_3:-52845686 None:intergenic
ATTCATCTTCAAGAGCTTGT+GGG 0.498399 3_3:-52847888 None:intergenic
TATTCATCTTCAAGAGCTTG+TGG 0.500590 3_3:-52847889 None:intergenic
AAGTTATGAGCAACAATGTA+GGG 0.502836 3_3:-52848451 None:intergenic
TGGGAGGGGACCAAGTATAT+GGG 0.502889 3_3:+52846809 Msa0457750:CDS
TCCAGTGACAACAGCCAAAA+GGG 0.503504 3_3:-52845685 None:intergenic
TGAATGCAAGTAACATACTA+AGG 0.504746 3_3:-52852426 None:intergenic
GCTGCAAAAGTTCCTTCTCA+AGG 0.507675 3_3:+52852349 Msa0457750:CDS
TTATAGAATTTAACTCCTAA+GGG 0.511535 3_3:-52847688 None:intergenic
CAAGTTATGAGCAACAATGT+AGG 0.512417 3_3:-52848452 None:intergenic
ATTAATGAGATCCTAGCAAA+TGG 0.514914 3_3:+52847718 Msa0457750:CDS
TATGTTGCAAATTGCACTAC+TGG 0.515491 3_3:+52848412 Msa0457750:CDS
TTGTGCAGACTGATTTGACT+TGG 0.516870 3_3:+52851174 Msa0457750:intron
TGGTGTATCTATTGGTCCCT+CGG 0.524206 3_3:+52850832 Msa0457750:CDS
AAAAGTTAGGATTCAGTGGA+AGG 0.525599 3_3:+52852911 Msa0457750:three_prime_UTR
TGGTCAAATAAGTGATATCA+AGG 0.528091 3_3:+52852579 Msa0457750:three_prime_UTR
AAGGAGCCTCAGATATAGAT+GGG 0.528884 3_3:+52846790 Msa0457750:CDS
TTCAAAGAAGTGAGTCACTA+AGG 0.542315 3_3:-52850033 None:intergenic
TGAGTTATCATCCCTTGAGA+AGG 0.545099 3_3:-52852361 None:intergenic
TGGCTCTATGTCTATCCAAA+GGG 0.545375 3_3:+52851194 Msa0457750:CDS
GTAACATACTAAGGTGACAT+TGG 0.547315 3_3:-52852417 None:intergenic
ACATCACAATTTGCAGCCAT+GGG 0.548341 3_3:+52845621 Msa0457750:CDS
AGCCTCAGATATAGATGGGA+GGG 0.549294 3_3:+52846794 Msa0457750:CDS
ACTCAAATTTGATCTTCACT+TGG 0.554564 3_3:+52852379 Msa0457750:three_prime_UTR
AAAGTTAGGATTCAGTGGAA+GGG 0.554982 3_3:+52852912 Msa0457750:three_prime_UTR
CTTCAAGGAGGTAGTGGAGA+TGG 0.557183 3_3:-52851484 None:intergenic
TTGAATGAAGCATATTGACT+TGG 0.557314 3_3:-52845729 None:intergenic
TTGATCACAGCATTGAAGAA+TGG 0.563467 3_3:+52850812 Msa0457750:intron
GATATCATATGCAGAGGGCA+AGG 0.565708 3_3:+52847654 Msa0457750:intron
GAATATTCTTGACCATGAGA+TGG 0.567125 3_3:-52847377 None:intergenic
GGAAGGACCTATAGCTCCCA+TGG 0.567501 3_3:-52845637 None:intergenic
CTCCTACATTACCACTGCTA+TGG 0.568763 3_3:-52847171 None:intergenic
ATATCATATGCAGAGGGCAA+GGG 0.568782 3_3:+52847655 Msa0457750:intron
CTGCAAAAGTTCCTTCTCAA+GGG 0.569967 3_3:+52852350 Msa0457750:CDS
TTGGCTCTATGTCTATCCAA+AGG 0.570642 3_3:+52851193 Msa0457750:CDS
GCCTCAGATATAGATGGGAG+GGG 0.572757 3_3:+52846795 Msa0457750:CDS
CCAATGAAAGAGAGTTACAA+AGG 0.573192 3_3:-52847860 None:intergenic
TGCATCCCATTCATAGCTGT+CGG 0.573399 3_3:-52852246 None:intergenic
CAATTTCTTTCACCACCTTG+AGG 0.574734 3_3:-52847333 None:intergenic
ATGTGAAGGGCTACTATGCA+TGG 0.578020 3_3:+52852216 Msa0457750:CDS
TCCCCTCCCATCTATATCTG+AGG 0.583431 3_3:-52846796 None:intergenic
ACATTCACTAAACAAAATCC+AGG 0.587307 3_3:+52846834 Msa0457750:CDS
TATCATATGCAGAGGGCAAG+GGG 0.588157 3_3:+52847656 Msa0457750:intron
CATACAGATTCTCCATCTCA+TGG 0.592212 3_3:+52847365 Msa0457750:CDS
CATTCTCTAGCAACTTAAGG+GGG 0.593786 3_3:+52852551 Msa0457750:three_prime_UTR
GACCATAGCAGTGGTAATGT+AGG 0.599218 3_3:+52847169 Msa0457750:CDS
CAATGAAAGAGAGTTACAAA+GGG 0.601814 3_3:-52847859 None:intergenic
TCATTCTCTAGCAACTTAAG+GGG 0.614339 3_3:+52852550 Msa0457750:three_prime_UTR
CTTGAAGCAAAAGTCAGCAT+AGG 0.616391 3_3:-52848284 None:intergenic
CAGACATGGTGCAAATGTGA+AGG 0.623231 3_3:+52852202 Msa0457750:intron
AACAAAGATATCATAATTTG+GGG 0.628062 3_3:-52850536 None:intergenic
ACAGCTATGAATGGGATGCA+GGG 0.632968 3_3:+52852249 Msa0457750:CDS
ACATATTTAGAACATCTACC+AGG 0.648943 3_3:-52848394 None:intergenic
ACCATCAATGGATATAATGG+TGG 0.653634 3_3:+52848361 Msa0457750:CDS
GAGCCTCAGATATAGATGGG+AGG 0.661750 3_3:+52846793 Msa0457750:CDS
ACTGCTTTGTGCATAATATG+TGG 0.670752 3_3:-52850642 None:intergenic
CATACTTTATTCCTTCAAGG+AGG 0.672177 3_3:-52851496 None:intergenic
ATTCCAAAGAGAAAATCATG+AGG 0.675686 3_3:-52845765 None:intergenic
AAGATTTGGGACCATAGCAG+TGG 0.678867 3_3:+52847160 Msa0457750:CDS
AGACATGGTGCAAATGTGAA+GGG 0.689499 3_3:+52852203 Msa0457750:intron
ATCATATGCAGAGGGCAAGG+GGG 0.702617 3_3:+52847657 Msa0457750:intron
TTTGTAGGAAGACCTCAAGG+TGG 0.734404 3_3:+52847321 Msa0457750:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTTTTTAAAAATTTA+AGG + chr3_3:52852842-52852861 Msa0457750:three_prime_UTR 0.0%
!!! AATATTTTTTAAAAATTTAA+GGG + chr3_3:52852843-52852862 Msa0457750:three_prime_UTR 0.0%
!! AATTAAAATCTAAAAATAGT+TGG + chr3_3:52846575-52846594 Msa0457750:intron 10.0%
!! AAATCAATGAAAAATAAATA+GGG - chr3_3:52846863-52846882 None:intergenic 10.0%
!!! AAAGATATATTTTTTTTTTG+AGG + chr3_3:52847414-52847433 Msa0457750:intron 10.0%
!!! AAGATATATTTTTTTTTTGA+GGG + chr3_3:52847415-52847434 Msa0457750:intron 10.0%
!!! TTTTTTCATTTTTTTATACT+AGG - chr3_3:52847514-52847533 None:intergenic 10.0%
!! AAAGTAATTAGTAATTATAT+AGG - chr3_3:52847751-52847770 None:intergenic 10.0%
!!! AAGAAAAAAATTGTTTTATT+TGG - chr3_3:52847973-52847992 None:intergenic 10.0%
!! AATTATAGTATAAAACAAAA+AGG - chr3_3:52849912-52849931 None:intergenic 10.0%
!!! TTTATAGGATAAATTTTATT+TGG + chr3_3:52850444-52850463 Msa0457750:intron 10.0%
!! TTCTTAAAAAAAAAAAAGTT+AGG + chr3_3:52852898-52852917 Msa0457750:three_prime_UTR 10.0%
!! TCTATATAAAGCAAAAAAAT+GGG - chr3_3:52845581-52845600 None:intergenic 15.0%
!! ATCTATATAAAGCAAAAAAA+TGG - chr3_3:52845582-52845601 None:intergenic 15.0%
!!! AAAAATAGATCTAACATTTT+TGG + chr3_3:52846168-52846187 Msa0457750:intron 15.0%
!!! ATTTTTTTTAAGAAGCTAAA+AGG + chr3_3:52846384-52846403 Msa0457750:intron 15.0%
!!! TTTTAGATTTTAATTTTTGG+TGG - chr3_3:52846570-52846589 None:intergenic 15.0%
!! CAAATCAATGAAAAATAAAT+AGG - chr3_3:52846864-52846883 None:intergenic 15.0%
!!! CTATTTATTTTTCATTGATT+TGG + chr3_3:52846862-52846881 Msa0457750:intron 15.0%
!! TTTACTTATAAATAGTTTAC+CGG + chr3_3:52846898-52846917 Msa0457750:intron 15.0%
!!! ATAAACTTCAATTATTTTGT+AGG + chr3_3:52847306-52847325 Msa0457750:intron 15.0%
!!! AGATATATTTTTTTTTTGAG+GGG + chr3_3:52847416-52847435 Msa0457750:intron 15.0%
!!! AAAAATTGTTTTATTTGGAA+AGG - chr3_3:52847968-52847987 None:intergenic 15.0%
!!! ATTAATTTAATGGATAAAAC+AGG + chr3_3:52848248-52848267 Msa0457750:intron 15.0%
!! TATATATTGCATAAACAAAT+AGG + chr3_3:52848556-52848575 Msa0457750:intron 15.0%
!! ATATATTGCATAAACAAATA+GGG + chr3_3:52848557-52848576 Msa0457750:intron 15.0%
!! CATTAAATAAATTATGTATC+TGG - chr3_3:52848699-52848718 None:intergenic 15.0%
!!! TCATATGTTAATATTTTCTT+CGG - chr3_3:52848756-52848775 None:intergenic 15.0%
!!! TAAGTATTTTTTTTTAAGGT+AGG + chr3_3:52849201-52849220 Msa0457750:intron 15.0%
!!! CATTATCAATTATTTTTTGA+AGG + chr3_3:52849731-52849750 Msa0457750:intron 15.0%
!!! ACATATTAATTTTTTTTTCC+AGG + chr3_3:52850483-52850502 Msa0457750:intron 15.0%
!!! TTGTTTTATGAATATTTTTC+AGG + chr3_3:52851383-52851402 Msa0457750:intron 15.0%
!! ATATTTAATCAAGAGTTTAA+TGG + chr3_3:52851550-52851569 Msa0457750:intron 15.0%
!! AGTATAATATAATTAGACAA+AGG - chr3_3:52851594-52851613 None:intergenic 15.0%
!! AATATCGATAAATAAATTGT+TGG + chr3_3:52852515-52852534 Msa0457750:three_prime_UTR 15.0%
!! TTTAAAAATTTAAGGGAATT+CGG + chr3_3:52852850-52852869 Msa0457750:three_prime_UTR 15.0%
!! TCAATAAATATACTATGTAG+TGG - chr3_3:52845817-52845836 None:intergenic 20.0%
!!! CTCATATTTATTTTGTTACA+TGG + chr3_3:52846004-52846023 Msa0457750:intron 20.0%
!! TTAATACATATTCCAACATA+AGG + chr3_3:52846080-52846099 Msa0457750:intron 20.0%
!! TAATACATATTCCAACATAA+GGG + chr3_3:52846081-52846100 Msa0457750:intron 20.0%
!!! TTATTATTTGAACTTGTTCA+TGG + chr3_3:52846128-52846147 Msa0457750:intron 20.0%
!! ACAAATTATTCTTTACTGTA+TGG + chr3_3:52846205-52846224 Msa0457750:intron 20.0%
!! CAAATTATTCTTTACTGTAT+GGG + chr3_3:52846206-52846225 Msa0457750:intron 20.0%
!!! ATATTTTAAAACCGTTTTGT+TGG - chr3_3:52846519-52846538 None:intergenic 20.0%
!! ATGATGAAGTAACAATTATT+TGG + chr3_3:52846647-52846666 Msa0457750:intron 20.0%
!! CATAAACATTTGATATATGT+AGG - chr3_3:52846988-52847007 None:intergenic 20.0%
!!! TATTATGAGGTAATTTTTGT+TGG + chr3_3:52847031-52847050 Msa0457750:intron 20.0%
!! AATTAAATTTCTCTCTATCT+TGG + chr3_3:52847127-52847146 Msa0457750:intron 20.0%
!!! ATATCTTTGTTATCTTACTT+GGG - chr3_3:52847402-52847421 None:intergenic 20.0%
!!! TATATCTTTGTTATCTTACT+TGG - chr3_3:52847403-52847422 None:intergenic 20.0%
!! TTATAGAATTTAACTCCTAA+GGG - chr3_3:52847691-52847710 None:intergenic 20.0%
!! ATAAGTGAATTACTGAAAAA+TGG - chr3_3:52847776-52847795 None:intergenic 20.0%
!!! ATTACATCCTTAAAAAGTTT+TGG + chr3_3:52849098-52849117 Msa0457750:intron 20.0%
!! CAATATTAATTATTGGAATG+TGG - chr3_3:52849699-52849718 None:intergenic 20.0%
!! TCGTCAACAATATTAATTAT+TGG - chr3_3:52849706-52849725 None:intergenic 20.0%
!! TTAAGAGAAAAAAGTTTATG+TGG + chr3_3:52849815-52849834 Msa0457750:intron 20.0%
!! TTAACAAATGTGATATTAGT+TGG - chr3_3:52849889-52849908 None:intergenic 20.0%
!!! GAAATTTTGTTTCATTTCAT+AGG + chr3_3:52849983-52850002 Msa0457750:intron 20.0%
!! TATAAAAAATCTACTTGAGT+TGG + chr3_3:52850178-52850197 Msa0457750:intron 20.0%
!!! CATTTTACTCTACTTTTAAA+CGG + chr3_3:52850224-52850243 Msa0457750:intron 20.0%
!!! ATTTTACTCTACTTTTAAAC+GGG + chr3_3:52850225-52850244 Msa0457750:intron 20.0%
!!! GCAAGAAATTAATTTTGTAA+CGG - chr3_3:52850375-52850394 None:intergenic 20.0%
!!! AATTTTGAGTTCTTGTTTAT+AGG + chr3_3:52850429-52850448 Msa0457750:intron 20.0%
!!! AATCTAAAATATGTCACTAA+AGG + chr3_3:52850736-52850755 Msa0457750:intron 20.0%
!! AGATTACAATATAGTTATTG+TGG - chr3_3:52851035-52851054 None:intergenic 20.0%
!!! AACAATATCATACAATGTTT+TGG + chr3_3:52851112-52851131 Msa0457750:intron 20.0%
!!! ACAATATCATACAATGTTTT+GGG + chr3_3:52851113-52851132 Msa0457750:intron 20.0%
!! TATCACAACAATTATTTACT+TGG + chr3_3:52851643-52851662 Msa0457750:intron 20.0%
!! TGTTTAATTAACGAGTTTAA+AGG - chr3_3:52851677-52851696 None:intergenic 20.0%
!! AATAAGTTATTTATCGAAAC+AGG + chr3_3:52852127-52852146 Msa0457750:intron 20.0%
!! TTCATATGTATTGAGATAAT+TGG + chr3_3:52852445-52852464 Msa0457750:three_prime_UTR 20.0%
!!! TTTTTTATTGCAGAAACTAA+AGG - chr3_3:52852810-52852829 None:intergenic 20.0%
! TAGAGAAAAAAGATAGAGAA+GGG - chr3_3:52845661-52845680 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr3_3:52845938-52845957 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr3_3:52845951-52845970 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr3_3:52845950-52845969 Msa0457750:intron 25.0%
! ACAAAATAAGAAGTGAGTAA+TGG - chr3_3:52846061-52846080 None:intergenic 25.0%
! AGCAAATATTGCAAATAAAC+TGG - chr3_3:52846107-52846126 None:intergenic 25.0%
! TTACTTCATCATTTGTTTCA+AGG - chr3_3:52846639-52846658 None:intergenic 25.0%
!!! TGAATCATTTACCATTTTTC+AGG + chr3_3:52846764-52846783 Msa0457750:intron 25.0%
!! TGATTTTTATCATCGATACA+AGG + chr3_3:52847195-52847214 Msa0457750:CDS 25.0%
!!! TATTTTTTTTTTGAGGGGAA+AGG + chr3_3:52847421-52847440 Msa0457750:intron 25.0%
! GTTATAGAATTTAACTCCTA+AGG - chr3_3:52847692-52847711 None:intergenic 25.0%
! GGAAAGGAATTAAGTTAATA+GGG - chr3_3:52847952-52847971 None:intergenic 25.0%
! TGGAAAGGAATTAAGTTAAT+AGG - chr3_3:52847953-52847972 None:intergenic 25.0%
! AAACAACTTGAAGGAAAAAA+GGG - chr3_3:52848020-52848039 None:intergenic 25.0%
! ACGATACATTATAATATGCA+GGG - chr3_3:52848177-52848196 None:intergenic 25.0%
!! ATTTAATGGATAAAACAGGA+AGG + chr3_3:52848252-52848271 Msa0457750:intron 25.0%
! AGTATACAAGAGAAAATATC+AGG + chr3_3:52848501-52848520 Msa0457750:CDS 25.0%
! AAGAGAAAATATCAGGTAAT+TGG + chr3_3:52848508-52848527 Msa0457750:intron 25.0%
! TTGTTTGGTATAAAAGAAAG+TGG + chr3_3:52849028-52849047 Msa0457750:intron 25.0%
!! AATGTAGCCAAAACTTTTTA+AGG - chr3_3:52849108-52849127 None:intergenic 25.0%
! ACACGTTAATGTCTAAAAAA+TGG + chr3_3:52849283-52849302 Msa0457750:intron 25.0%
! TACAGTAATATGTTACATCA+AGG + chr3_3:52849317-52849336 Msa0457750:intron 25.0%
! TATATTAACTTATGCCCTTA+GGG - chr3_3:52849548-52849567 None:intergenic 25.0%
! TTATATTAACTTATGCCCTT+AGG - chr3_3:52849549-52849568 None:intergenic 25.0%
! TGTCTATATCAACATGTTAA+GGG - chr3_3:52849572-52849591 None:intergenic 25.0%
! TTGTCTATATCAACATGTTA+AGG - chr3_3:52849573-52849592 None:intergenic 25.0%
! CCATAATTGACAATATTAGT+TGG - chr3_3:52849761-52849780 None:intergenic 25.0%
! CCAACTAATATTGTCAATTA+TGG + chr3_3:52849758-52849777 Msa0457750:intron 25.0%
!!! CTCAAGTAGATTTTTTATAC+AGG - chr3_3:52850177-52850196 None:intergenic 25.0%
!!! TTTTACTCTACTTTTAAACG+GGG + chr3_3:52850226-52850245 Msa0457750:intron 25.0%
! ATTAGATCTCTTAGATTAGT+CGG + chr3_3:52850270-52850289 Msa0457750:intron 25.0%
!!! ATTCTAGTTTTGTGAATTTG+GGG - chr3_3:52850574-52850593 None:intergenic 25.0%
!!! GATTCTAGTTTTGTGAATTT+GGG - chr3_3:52850575-52850594 None:intergenic 25.0%
!!! AGATTCTAGTTTTGTGAATT+TGG - chr3_3:52850576-52850595 None:intergenic 25.0%
!! AAAGATTCCTATGATTTTCT+TGG + chr3_3:52850605-52850624 Msa0457750:CDS 25.0%
! GAAAAAAAAAATCATACCGA+GGG - chr3_3:52850851-52850870 None:intergenic 25.0%
! ATACTACATTTGTGAAGAAT+CGG - chr3_3:52850908-52850927 None:intergenic 25.0%
!!! TATAGTTATTGTGGCTTTAT+AGG - chr3_3:52851026-52851045 None:intergenic 25.0%
!!! TTTTTTTGTCTTAGATGAAG+TGG - chr3_3:52851918-52851937 None:intergenic 25.0%
! ACCAATTATGTAATGCTTAA+TGG + chr3_3:52852472-52852491 Msa0457750:three_prime_UTR 25.0%
!! AAGTTTCTTATATTTGAGAC+CGG - chr3_3:52852616-52852635 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr3_3:52852651-52852670 Msa0457750:intron 25.0%
! ATATTCACAGCTTAATCATT+TGG + chr3_3:52852760-52852779 Msa0457750:three_prime_UTR 25.0%
! AAAAAAAAGTTAGGATTCAG+TGG + chr3_3:52852907-52852926 Msa0457750:three_prime_UTR 25.0%
CAGAACTCATTAAGAAATCA+TGG + chr3_3:52845555-52845574 Msa0457750:five_prime_UTR 30.0%
CTAGAGAAAAAAGATAGAGA+AGG - chr3_3:52845662-52845681 None:intergenic 30.0%
! TTGAATGAAGCATATTGACT+TGG - chr3_3:52845732-52845751 None:intergenic 30.0%
GTCAATATGCTTCATTCAAT+AGG + chr3_3:52845733-52845752 Msa0457750:CDS 30.0%
AGAGAAAATCATGAGGAAAA+AGG - chr3_3:52845761-52845780 None:intergenic 30.0%
! TTTCCTCATGATTTTCTCTT+TGG + chr3_3:52845762-52845781 Msa0457750:CDS 30.0%
ATTCCAAAGAGAAAATCATG+AGG - chr3_3:52845768-52845787 None:intergenic 30.0%
!!! CATGATTTTCTCTTTGGAAT+TGG + chr3_3:52845768-52845787 Msa0457750:CDS 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr3_3:52845853-52845872 Msa0457750:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr3_3:52845925-52845944 None:intergenic 30.0%
TATAGCCACAACATTAAGAA+GGG - chr3_3:52846291-52846310 None:intergenic 30.0%
ATATAGCCACAACATTAAGA+AGG - chr3_3:52846292-52846311 None:intergenic 30.0%
! GCATTAACATCAAGGTATTA+AGG - chr3_3:52846338-52846357 None:intergenic 30.0%
AAAGTAAATACATGTGCATG+TGG + chr3_3:52846473-52846492 Msa0457750:intron 30.0%
TAACAAACAAGCCAACAAAA+CGG + chr3_3:52846505-52846524 Msa0457750:intron 30.0%
GATCTAAACTTCATTCTTAG+TGG - chr3_3:52846617-52846636 None:intergenic 30.0%
! AAAATCAAGGTCTTGTATCA+TGG - chr3_3:52846714-52846733 None:intergenic 30.0%
!!! TTTACCATTTTTCAGGTAGA+AGG + chr3_3:52846771-52846790 Msa0457750:intron 30.0%
ACATTCACTAAACAAAATCC+AGG + chr3_3:52846834-52846853 Msa0457750:CDS 30.0%
GAAAAATAAATAGGGTAACC+TGG - chr3_3:52846855-52846874 None:intergenic 30.0%
! TATGCAACTCTTTTCCTATT+TGG + chr3_3:52847004-52847023 Msa0457750:intron 30.0%
! ATGCAACTCTTTTCCTATTT+GGG + chr3_3:52847005-52847024 Msa0457750:intron 30.0%
ACTTAGTGACAAGAGATTTA+AGG - chr3_3:52847546-52847565 None:intergenic 30.0%
TGTAATGATATCATATGCAG+AGG + chr3_3:52847648-52847667 Msa0457750:intron 30.0%
GTAATGATATCATATGCAGA+GGG + chr3_3:52847649-52847668 Msa0457750:intron 30.0%
ATTAATGAGATCCTAGCAAA+TGG + chr3_3:52847718-52847737 Msa0457750:CDS 30.0%
! TAGGATTTTTACCATTTGCT+AGG - chr3_3:52847732-52847751 None:intergenic 30.0%
!!! CTCATTGAGAACTCATTTTT+TGG + chr3_3:52847813-52847832 Msa0457750:intron 30.0%
!!! AACTCATTTTTTGGCTTACA+TGG + chr3_3:52847822-52847841 Msa0457750:intron 30.0%
CAATGAAAGAGAGTTACAAA+GGG - chr3_3:52847862-52847881 None:intergenic 30.0%
CTTTGTAACTCTCTTTCATT+GGG + chr3_3:52847861-52847880 Msa0457750:CDS 30.0%
AGCTCTTGAAGATGAATATA+AGG + chr3_3:52847894-52847913 Msa0457750:CDS 30.0%
GCTCTTGAAGATGAATATAA+GGG + chr3_3:52847895-52847914 Msa0457750:CDS 30.0%
! TGACTAGAATTCACCTTTTA+AGG + chr3_3:52848042-52848061 Msa0457750:intron 30.0%
!!! ACCTTTTAAGGTGATAAATG+AGG + chr3_3:52848054-52848073 Msa0457750:intron 30.0%
ACCTCATTTATCACCTTAAA+AGG - chr3_3:52848058-52848077 None:intergenic 30.0%
AACAACTTGAAGGAAAAAAG+GGG - chr3_3:52848095-52848114 None:intergenic 30.0%
CAAACAACTTGAAGGAAAAA+AGG - chr3_3:52848021-52848040 None:intergenic 30.0%
! TGACTAGAATTCACCTTTTA+AGG + chr3_3:52848042-52848061 Msa0457750:intron 30.0%
!!! ACCTTTTAAGGTGATAAATG+AGG + chr3_3:52848054-52848073 Msa0457750:intron 30.0%
ACCTCATTTATCACCTTAAA+AGG - chr3_3:52848058-52848077 None:intergenic 30.0%
TACATTATAATATGCAGGGT+CGG - chr3_3:52848173-52848192 None:intergenic 30.0%
GACGATACATTATAATATGC+AGG - chr3_3:52848178-52848197 None:intergenic 30.0%
TACACCATCAATGGATATAA+TGG + chr3_3:52848358-52848377 Msa0457750:CDS 30.0%
! ACATATTTAGAACATCTACC+AGG - chr3_3:52848397-52848416 None:intergenic 30.0%
AAGTTATGAGCAACAATGTA+GGG - chr3_3:52848454-52848473 None:intergenic 30.0%
TACTTATAAATGTGACCAGA+TGG - chr3_3:52848595-52848614 None:intergenic 30.0%
TAAAATGAGCAACTTTGGAT+TGG - chr3_3:52848887-52848906 None:intergenic 30.0%
! AATCCAAAGTTGCTCATTTT+AGG + chr3_3:52848886-52848905 Msa0457750:intron 30.0%
GAGTAAGGAAAGATTATATG+AGG + chr3_3:52848969-52848988 Msa0457750:intron 30.0%
GAAAAAGAATAGAAAGTGAG+AGG + chr3_3:52848995-52849014 Msa0457750:intron 30.0%
AAAGTGGAATAGAAAGTGAA+AGG + chr3_3:52849044-52849063 Msa0457750:intron 30.0%
! ATGTTACATCAAGGCTATTT+TGG + chr3_3:52849326-52849345 Msa0457750:intron 30.0%
! TGGACATTTTCCCATAAAAT+TGG + chr3_3:52849346-52849365 Msa0457750:intron 30.0%
CATGTTCGTCAAAATTCATA+TGG + chr3_3:52849604-52849623 Msa0457750:intron 30.0%
TTTCAAACATCATCGTAACT+AGG - chr3_3:52849664-52849683 None:intergenic 30.0%
! ATTGTCAATTATGGTTGATG+TGG + chr3_3:52849767-52849786 Msa0457750:intron 30.0%
! TATTTTCACAACTGCAAAGT+GGG - chr3_3:52849848-52849867 None:intergenic 30.0%
! ATATTTTCACAACTGCAAAG+TGG - chr3_3:52849849-52849868 None:intergenic 30.0%
ATTTCATAGGCTCATCAAAA+AGG + chr3_3:52849996-52850015 Msa0457750:intron 30.0%
GCTCATCAAAAAGGAAAAAT+TGG + chr3_3:52850005-52850024 Msa0457750:CDS 30.0%
! CTTTTTATCAGCAACACTAT+TGG - chr3_3:52850066-52850085 None:intergenic 30.0%
! CAATAGTGTTGCTGATAAAA+AGG + chr3_3:52850064-52850083 Msa0457750:CDS 30.0%
ATTCACACCAAGAAAATCAT+AGG - chr3_3:52850615-52850634 None:intergenic 30.0%
!!! TAGTCCATTTCGACATTTTT+TGG - chr3_3:52850671-52850690 None:intergenic 30.0%
TTGAAGAATGGTGTATCTAT+TGG + chr3_3:52850824-52850843 Msa0457750:CDS 30.0%
GGAAAAAAAAAATCATACCG+AGG - chr3_3:52850852-52850871 None:intergenic 30.0%
GATCTATGGTGTGAAAAAAT+TGG - chr3_3:52850934-52850953 None:intergenic 30.0%
CAATTTAAGTCTTCGATCTA+TGG - chr3_3:52850948-52850967 None:intergenic 30.0%
!! TTTGGGTTATTTCTTACCTA+AGG + chr3_3:52851130-52851149 Msa0457750:intron 30.0%
! AAGTTTTGCTTGATTACCTT+AGG - chr3_3:52851149-52851168 None:intergenic 30.0%
! GGTAATCAAGCAAAACTTTT+TGG + chr3_3:52851151-52851170 Msa0457750:intron 30.0%
TTATATTAGTCAGTAGAAGC+TGG + chr3_3:52851333-52851352 Msa0457750:intron 30.0%
ACTCATACTTTATTCCTTCA+AGG - chr3_3:52851502-52851521 None:intergenic 30.0%
TTTCCATATGCTCTTCAATA+TGG + chr3_3:52851977-52851996 Msa0457750:intron 30.0%
! AAACCATATTGAAGAGCATA+TGG - chr3_3:52851983-52852002 None:intergenic 30.0%
! TTGTATACGCTATAAGTTGA+TGG - chr3_3:52852012-52852031 None:intergenic 30.0%
CACAATGAATTGATTGAACA+TGG + chr3_3:52852152-52852171 Msa0457750:intron 30.0%
! GAACATGGTAGTTAATGTTT+TGG + chr3_3:52852167-52852186 Msa0457750:intron 30.0%
ACTCAAATTTGATCTTCACT+TGG + chr3_3:52852379-52852398 Msa0457750:three_prime_UTR 30.0%
TGAATGCAAGTAACATACTA+AGG - chr3_3:52852429-52852448 None:intergenic 30.0%
GCCATTAAGCATTACATAAT+TGG - chr3_3:52852476-52852495 None:intergenic 30.0%
TTTCATTCTCTAGCAACTTA+AGG + chr3_3:52852548-52852567 Msa0457750:three_prime_UTR 30.0%
TTCATTCTCTAGCAACTTAA+GGG + chr3_3:52852549-52852568 Msa0457750:three_prime_UTR 30.0%
TGGTCAAATAAGTGATATCA+AGG + chr3_3:52852579-52852598 Msa0457750:three_prime_UTR 30.0%
CATTCAATAAACGATGTATG+TGG - chr3_3:52852690-52852709 None:intergenic 30.0%
! AAGTTTCTTACATTTGAGAC+CGG + chr3_3:52852725-52852744 Msa0457750:intron 30.0%
AAAAATTTAAGGGAATTCGG+AGG + chr3_3:52852853-52852872 Msa0457750:three_prime_UTR 30.0%
AGATGTCACTACTTCATCTT+TGG + chr3_3:52845598-52845617 Msa0457750:exon 35.0%
GAAAAAAGATAGAGAAGGGA+AGG - chr3_3:52845657-52845676 None:intergenic 35.0%
! TTTTTCTCTAGCTACCCTTT+TGG + chr3_3:52845671-52845690 Msa0457750:CDS 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr3_3:52845858-52845877 None:intergenic 35.0%
TGTTGCTAATGCTAGCTATA+TGG - chr3_3:52846034-52846053 None:intergenic 35.0%
AAATAAACTGGCCCTTATGT+TGG - chr3_3:52846095-52846114 None:intergenic 35.0%
TATTGCCCTTCTTAATGTTG+TGG + chr3_3:52846283-52846302 Msa0457750:intron 35.0%
AATAGCAAAGATTGCACCAT+CGG - chr3_3:52846360-52846379 None:intergenic 35.0%
CTAAACTTCATTCTTAGTGG+TGG - chr3_3:52846614-52846633 None:intergenic 35.0%
GCTGGATACACATAAAATCA+AGG - chr3_3:52846727-52846746 None:intergenic 35.0%
! TGATTTTATGTGTATCCAGC+TGG + chr3_3:52846727-52846746 Msa0457750:intron 35.0%
CCTCATAATACAACCCAAAT+AGG - chr3_3:52847021-52847040 None:intergenic 35.0%
!! CCTATTTGGGTTGTATTATG+AGG + chr3_3:52847018-52847037 Msa0457750:intron 35.0%
TTGGTTGAGCAGATAAGATT+TGG + chr3_3:52847146-52847165 Msa0457750:intron 35.0%
TGGTTGAGCAGATAAGATTT+GGG + chr3_3:52847147-52847166 Msa0457750:intron 35.0%
! TATTTTGTAGGAAGACCTCA+AGG + chr3_3:52847318-52847337 Msa0457750:intron 35.0%
GAATATTCTTGACCATGAGA+TGG - chr3_3:52847380-52847399 None:intergenic 35.0%
!!! TCATTTTTTGGCTTACATGG+TGG + chr3_3:52847825-52847844 Msa0457750:intron 35.0%
CCAATGAAAGAGAGTTACAA+AGG - chr3_3:52847863-52847882 None:intergenic 35.0%
CCTTTGTAACTCTCTTTCAT+TGG + chr3_3:52847860-52847879 Msa0457750:CDS 35.0%
ATTCATCTTCAAGAGCTTGT+GGG - chr3_3:52847891-52847910 None:intergenic 35.0%
TATTCATCTTCAAGAGCTTG+TGG - chr3_3:52847892-52847911 None:intergenic 35.0%
CTAGTCATCAAACAACTTGA+AGG - chr3_3:52848029-52848048 None:intergenic 35.0%
CTAGTCATCAAACAACTTGA+AGG - chr3_3:52848029-52848048 None:intergenic 35.0%
ACATTATAATATGCAGGGTC+GGG - chr3_3:52848172-52848191 None:intergenic 35.0%
TTGTGATGATAGCTCAGTTA+GGG - chr3_3:52848203-52848222 None:intergenic 35.0%
! GACTTTTGCTTCAAGACATT+TGG + chr3_3:52848292-52848311 Msa0457750:CDS 35.0%
CTTCAAGACATTTGGAGATA+GGG + chr3_3:52848300-52848319 Msa0457750:CDS 35.0%
!! CCATTGATGGTGTATGAATA+AGG - chr3_3:52848352-52848371 None:intergenic 35.0%
CCTTATTCATACACCATCAA+TGG + chr3_3:52848349-52848368 Msa0457750:CDS 35.0%
ACCATCAATGGATATAATGG+TGG + chr3_3:52848361-52848380 Msa0457750:CDS 35.0%
ACCACCATTATATCCATTGA+TGG - chr3_3:52848365-52848384 None:intergenic 35.0%
TATGTTGCAAATTGCACTAC+TGG + chr3_3:52848412-52848431 Msa0457750:CDS 35.0%
CAAGTTATGAGCAACAATGT+AGG - chr3_3:52848455-52848474 None:intergenic 35.0%
!!! GGGTATTTTGATATTCCATC+TGG + chr3_3:52848577-52848596 Msa0457750:intron 35.0%
TCTTTAACATGTGCTCTTGA+GGG - chr3_3:52848795-52848814 None:intergenic 35.0%
TTCTTTAACATGTGCTCTTG+AGG - chr3_3:52848796-52848815 None:intergenic 35.0%
GAACCTAAAATGAGCAACTT+TGG - chr3_3:52848892-52848911 None:intergenic 35.0%
GGATGATCAAAGAAAGTGAA+AGG + chr3_3:52848939-52848958 Msa0457750:intron 35.0%
GTGAAAGGAAAGAAAGAGTA+AGG + chr3_3:52848954-52848973 Msa0457750:intron 35.0%
! AGAAAGTGAGAGGATTGTTT+TGG + chr3_3:52849005-52849024 Msa0457750:intron 35.0%
!!! AGAGGATTGTTTTGGTTGTT+TGG + chr3_3:52849013-52849032 Msa0457750:intron 35.0%
GGAAAGAGTGATGTGTATAT+TGG + chr3_3:52849065-52849084 Msa0457750:intron 35.0%
! GTGGAATGCACCAATTTTAT+GGG - chr3_3:52849359-52849378 None:intergenic 35.0%
! AGTGGAATGCACCAATTTTA+TGG - chr3_3:52849360-52849379 None:intergenic 35.0%
!!! GGAAAAGAAAGTTTTGAGGT+GGG - chr3_3:52849425-52849444 None:intergenic 35.0%
!!! AGGAAAAGAAAGTTTTGAGG+TGG - chr3_3:52849426-52849445 None:intergenic 35.0%
! GGTAGGAAAAGAAAGTTTTG+AGG - chr3_3:52849429-52849448 None:intergenic 35.0%
! TACAGTACTTTTCCACTGTT+TGG - chr3_3:52849466-52849485 None:intergenic 35.0%
GATAAGGGAAAGAAAGGATA+GGG - chr3_3:52849505-52849524 None:intergenic 35.0%
AGATAAGGGAAAGAAAGGAT+AGG - chr3_3:52849506-52849525 None:intergenic 35.0%
TGGAAAGATAAGGGAAAGAA+AGG - chr3_3:52849511-52849530 None:intergenic 35.0%
TTCTTTCCCTTATCTTTCCA+TGG + chr3_3:52849511-52849530 Msa0457750:intron 35.0%
TTGGATCCATGGAAAGATAA+GGG - chr3_3:52849520-52849539 None:intergenic 35.0%
TTTGGATCCATGGAAAGATA+AGG - chr3_3:52849521-52849540 None:intergenic 35.0%
GATATTAGTTGGTCACATGA+AGG - chr3_3:52849878-52849897 None:intergenic 35.0%
TTCAAAGAAGTGAGTCACTA+AGG - chr3_3:52850036-52850055 None:intergenic 35.0%
TCAGCAACACTATTGGAATA+TGG - chr3_3:52850059-52850078 None:intergenic 35.0%
!!! CACTTGACTTCTTTTTTGGA+TGG + chr3_3:52850099-52850118 Msa0457750:CDS 35.0%
! TCCATGTGTAGTTAGTTTCA+TGG - chr3_3:52850397-52850416 None:intergenic 35.0%
TTTGCTCATCCCATTACATA+TGG + chr3_3:52850506-52850525 Msa0457750:CDS 35.0%
! GGATAATGGCCATATGTAAT+GGG - chr3_3:52850518-52850537 None:intergenic 35.0%
ACTGCTTTGTGCATAATATG+TGG - chr3_3:52850645-52850664 None:intergenic 35.0%
TGCACCAAAAAATGTCGAAA+TGG + chr3_3:52850664-52850683 Msa0457750:CDS 35.0%
! TTGATCACAGCATTGAAGAA+TGG + chr3_3:52850812-52850831 Msa0457750:intron 35.0%
AAACAAACAACGAAATCACG+AGG - chr3_3:52850873-52850892 None:intergenic 35.0%
ACAAGATCATGAATTCCCTT+TGG - chr3_3:52851212-52851231 None:intergenic 35.0%
! TTTTCAGTAATGTACACTGG+TGG - chr3_3:52851263-52851282 None:intergenic 35.0%
! CCATTTTCAGTAATGTACAC+TGG - chr3_3:52851266-52851285 None:intergenic 35.0%
CCAGTGTACATTACTGAAAA+TGG + chr3_3:52851263-52851282 Msa0457750:CDS 35.0%
! TTTCAGGCATTGCTACATAT+AGG + chr3_3:52851399-52851418 Msa0457750:intron 35.0%
TAGCTCGTAAAGATGGTATT+AGG + chr3_3:52851444-52851463 Msa0457750:CDS 35.0%
CATACTTTATTCCTTCAAGG+AGG - chr3_3:52851499-52851518 None:intergenic 35.0%
TAAAGTCACACACAACTATG+AGG - chr3_3:52851881-52851900 None:intergenic 35.0%
! GTGTGTGACTTTAATTTCAG+TGG + chr3_3:52851888-52851907 Msa0457750:intron 35.0%
! ATTTTCCGACAGCTATGAAT+GGG + chr3_3:52852241-52852260 Msa0457750:CDS 35.0%
GTAACATACTAAGGTGACAT+TGG - chr3_3:52852420-52852439 None:intergenic 35.0%
TCATTCTCTAGCAACTTAAG+GGG + chr3_3:52852550-52852569 Msa0457750:three_prime_UTR 35.0%
! TTCTTATATTTGAGACCGGA+GGG - chr3_3:52852612-52852631 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG - chr3_3:52852613-52852632 None:intergenic 35.0%
TGAATATTGAATACTCCCTC+CGG - chr3_3:52852747-52852766 None:intergenic 35.0%
! CAGAAACTAAAGGAGCATAT+AGG - chr3_3:52852800-52852819 None:intergenic 35.0%
GAATTCGGAGGTTAAGATTT+AGG + chr3_3:52852865-52852884 Msa0457750:three_prime_UTR 35.0%
AAAAGTTAGGATTCAGTGGA+AGG + chr3_3:52852911-52852930 Msa0457750:three_prime_UTR 35.0%
AAAGTTAGGATTCAGTGGAA+GGG + chr3_3:52852912-52852931 Msa0457750:three_prime_UTR 35.0%
ACATCACAATTTGCAGCCAT+GGG + chr3_3:52845621-52845640 Msa0457750:CDS 40.0%
TGGAACTGAACCACAAAAAG+TGG + chr3_3:52845704-52845723 Msa0457750:CDS 40.0%
!!! TGACTTGGTTCCACTTTTTG+TGG - chr3_3:52845717-52845736 None:intergenic 40.0%
! AATTGGTTCTTCTGCTTACC+AGG + chr3_3:52845785-52845804 Msa0457750:CDS 40.0%
ACTATGTAGTGGTATGAACC+TGG - chr3_3:52845806-52845825 None:intergenic 40.0%
TGCTAATGCTAGCTATATGG+TGG - chr3_3:52846031-52846050 None:intergenic 40.0%
! GTTTTTGATGTCTCTACGAC+AGG - chr3_3:52846316-52846335 None:intergenic 40.0%
TACCTTGATGTTAATGCCGA+TGG + chr3_3:52846341-52846360 Msa0457750:intron 40.0%
ATAAGAACCATTCGCGCAAA+AGG + chr3_3:52846423-52846442 Msa0457750:intron 40.0%
! CGCAAAAGGTGTGTTTCAAA+TGG + chr3_3:52846437-52846456 Msa0457750:intron 40.0%
TTGAGTAACTCGTAAGCTCT+AGG + chr3_3:52846538-52846557 Msa0457750:intron 40.0%
TCATTCTTAGTGGTGGTTGA+AGG - chr3_3:52846607-52846626 None:intergenic 40.0%
!!! ATGCTTACTTTTTCTCCAGC+TGG - chr3_3:52846745-52846764 None:intergenic 40.0%
AAGGAGCCTCAGATATAGAT+GGG + chr3_3:52846790-52846809 Msa0457750:CDS 40.0%
GTGAATGTGTCCCATATACT+TGG - chr3_3:52846822-52846841 None:intergenic 40.0%
TTACCGGTGAAACTCATACA+CGG + chr3_3:52846914-52846933 Msa0457750:intron 40.0%
TTACCGTGTATGAGTTTCAC+CGG - chr3_3:52846920-52846939 None:intergenic 40.0%
CAATTTCTTTCACCACCTTG+AGG - chr3_3:52847336-52847355 None:intergenic 40.0%
CTCAAGGTGGTGAAAGAAAT+TGG + chr3_3:52847334-52847353 Msa0457750:CDS 40.0%
GGTGGTGAAAGAAATTGGTT+TGG + chr3_3:52847339-52847358 Msa0457750:CDS 40.0%
CATACAGATTCTCCATCTCA+TGG + chr3_3:52847365-52847384 Msa0457750:CDS 40.0%
ATATCATATGCAGAGGGCAA+GGG + chr3_3:52847655-52847674 Msa0457750:intron 40.0%
GAAAAAAGGGGTTCGAACAT+CGG - chr3_3:52848083-52848102 None:intergenic 40.0%
CATTATAATATGCAGGGTCG+GGG - chr3_3:52848171-52848190 None:intergenic 40.0%
CTTGTGATGATAGCTCAGTT+AGG - chr3_3:52848204-52848223 None:intergenic 40.0%
CTTGAAGCAAAAGTCAGCAT+AGG - chr3_3:52848287-52848306 None:intergenic 40.0%
GCTTCAAGACATTTGGAGAT+AGG + chr3_3:52848299-52848318 Msa0457750:CDS 40.0%
TTGGAGATAGGGTTAAGCAT+TGG + chr3_3:52848311-52848330 Msa0457750:CDS 40.0%
TGGAGATAGGGTTAAGCATT+GGG + chr3_3:52848312-52848331 Msa0457750:CDS 40.0%
TTCCTTAACATGTGCCCTTA+GGG + chr3_3:52848909-52848928 Msa0457750:intron 40.0%
ATCATCCAAACAGACCCTAA+GGG - chr3_3:52848926-52848945 None:intergenic 40.0%
!!! TTGCGGAAAGTTTTTGAGTG+TGG + chr3_3:52849397-52849416 Msa0457750:intron 40.0%
!!! TGCGGAAAGTTTTTGAGTGT+GGG + chr3_3:52849398-52849417 Msa0457750:intron 40.0%
TGTTTGGCAGGACAAAGAAA+GGG - chr3_3:52849450-52849469 None:intergenic 40.0%
GAAAGGATAGGGAAAGAAAG+TGG - chr3_3:52849494-52849513 None:intergenic 40.0%
!!! CGAGCACTTGACTTCTTTTT+TGG + chr3_3:52850095-52850114 Msa0457750:CDS 40.0%
GCCATGAAACTAACTACACA+TGG + chr3_3:52850393-52850412 Msa0457750:intron 40.0%
! GGGATAATGGCCATATGTAA+TGG - chr3_3:52850519-52850538 None:intergenic 40.0%
!! TTGTGCAGACTGATTTGACT+TGG + chr3_3:52851174-52851193 Msa0457750:intron 40.0%
!! TTGGCTCTATGTCTATCCAA+AGG + chr3_3:52851193-52851212 Msa0457750:CDS 40.0%
! TGGCTCTATGTCTATCCAAA+GGG + chr3_3:52851194-52851213 Msa0457750:CDS 40.0%
TCTTTACGAGCTACATTGAC+TGG - chr3_3:52851437-52851456 None:intergenic 40.0%
GTCAATGTAGCTCGTAAAGA+TGG + chr3_3:52851437-52851456 Msa0457750:CDS 40.0%
TTATTCCTTCAAGGAGGTAG+TGG - chr3_3:52851493-52851512 None:intergenic 40.0%
TGGTAAATGCCGAAATTGCA+AGG + chr3_3:52851823-52851842 Msa0457750:intron 40.0%
AGACATGGTGCAAATGTGAA+GGG + chr3_3:52852203-52852222 Msa0457750:intron 40.0%
! CATTTTCCGACAGCTATGAA+TGG + chr3_3:52852240-52852259 Msa0457750:CDS 40.0%
!! ATCCCAAGTACTCTGCTTTT+TGG + chr3_3:52852327-52852346 Msa0457750:CDS 40.0%
! AGCCAAAAAGCAGAGTACTT+GGG - chr3_3:52852332-52852351 None:intergenic 40.0%
CTGCAAAAGTTCCTTCTCAA+GGG + chr3_3:52852350-52852369 Msa0457750:CDS 40.0%
TGAGTTATCATCCCTTGAGA+AGG - chr3_3:52852364-52852383 None:intergenic 40.0%
CATTCTCTAGCAACTTAAGG+GGG + chr3_3:52852551-52852570 Msa0457750:three_prime_UTR 40.0%
! TTTCTTACATTTGAGACCGG+AGG + chr3_3:52852728-52852747 Msa0457750:intron 40.0%
! TTCTTACATTTGAGACCGGA+GGG + chr3_3:52852729-52852748 Msa0457750:intron 40.0%
AAGTTAGGATTCAGTGGAAG+GGG + chr3_3:52852913-52852932 Msa0457750:three_prime_UTR 40.0%
GACATCACAATTTGCAGCCA+TGG + chr3_3:52845620-52845639 Msa0457750:CDS 45.0%
TCCAGTGACAACAGCCAAAA+GGG - chr3_3:52845688-52845707 None:intergenic 45.0%
TTCCAGTGACAACAGCCAAA+AGG - chr3_3:52845689-52845708 None:intergenic 45.0%
CACCATCGGCATTAACATCA+AGG - chr3_3:52846346-52846365 None:intergenic 45.0%
! AAACACACCTTTTGCGCGAA+TGG - chr3_3:52846433-52846452 None:intergenic 45.0%
GGCTCCTTCTACCTGAAAAA+TGG - chr3_3:52846778-52846797 None:intergenic 45.0%
GAAGGAGCCTCAGATATAGA+TGG + chr3_3:52846789-52846808 Msa0457750:CDS 45.0%
AGCCTCAGATATAGATGGGA+GGG + chr3_3:52846794-52846813 Msa0457750:CDS 45.0%
! AAGATTTGGGACCATAGCAG+TGG + chr3_3:52847160-52847179 Msa0457750:CDS 45.0%
! GACCATAGCAGTGGTAATGT+AGG + chr3_3:52847169-52847188 Msa0457750:CDS 45.0%
CTCCTACATTACCACTGCTA+TGG - chr3_3:52847174-52847193 None:intergenic 45.0%
TTTGTAGGAAGACCTCAAGG+TGG + chr3_3:52847321-52847340 Msa0457750:intron 45.0%
GATATCATATGCAGAGGGCA+AGG + chr3_3:52847654-52847673 Msa0457750:intron 45.0%
TATCATATGCAGAGGGCAAG+GGG + chr3_3:52847656-52847675 Msa0457750:intron 45.0%
!!! TTTTTGGCTTACATGGTGGC+AGG + chr3_3:52847829-52847848 Msa0457750:intron 45.0%
! AATGGTGGTACTTTTGCACC+TGG + chr3_3:52848376-52848395 Msa0457750:CDS 45.0%
GTTCCTTAACATGTGCCCTT+AGG + chr3_3:52848908-52848927 Msa0457750:intron 45.0%
GATCATCCAAACAGACCCTA+AGG - chr3_3:52848927-52848946 None:intergenic 45.0%
CTGTTTGGCAGGACAAAGAA+AGG - chr3_3:52849451-52849470 None:intergenic 45.0%
TTCTTTGTCCTGCCAAACAG+TGG + chr3_3:52849451-52849470 Msa0457750:intron 45.0%
! GTACTTTTCCACTGTTTGGC+AGG - chr3_3:52849462-52849481 None:intergenic 45.0%
GGATAGGGAAAGAAAGTGGA+TGG - chr3_3:52849490-52849509 None:intergenic 45.0%
TTAGGGTACGTTTGGATCCA+TGG - chr3_3:52849531-52849550 None:intergenic 45.0%
ATGGATCCAAACGTACCCTA+AGG + chr3_3:52849530-52849549 Msa0457750:intron 45.0%
TGGATCCAAACGTACCCTAA+GGG + chr3_3:52849531-52849550 Msa0457750:intron 45.0%
TTATGCCCTTAGGGTACGTT+TGG - chr3_3:52849539-52849558 None:intergenic 45.0%
CACAACTGCAAAGTGGGATT+AGG - chr3_3:52849842-52849861 None:intergenic 45.0%
GTTGCTGATAAAAAGGCTGC+AGG + chr3_3:52850071-52850090 Msa0457750:CDS 45.0%
! TTAAACGGGGTGCTTACAAG+TGG + chr3_3:52850239-52850258 Msa0457750:intron 45.0%
! TAAACGGGGTGCTTACAAGT+GGG + chr3_3:52850240-52850259 Msa0457750:intron 45.0%
! TGTAATGGGATGAGCAAACC+TGG - chr3_3:52850504-52850523 None:intergenic 45.0%
TGGTGTATCTATTGGTCCCT+CGG + chr3_3:52850832-52850851 Msa0457750:CDS 45.0%
!! GGTAGTGGAGATGGTCATTA+TGG - chr3_3:52851478-52851497 None:intergenic 45.0%
TCTAGAAGTCCTAGCACAAC+TGG + chr3_3:52851803-52851822 Msa0457750:intron 45.0%
AAATGCCGAAATTGCAAGGC+CGG + chr3_3:52851827-52851846 Msa0457750:intron 45.0%
ACACACAACTATGAGGTCTC+AGG - chr3_3:52851874-52851893 None:intergenic 45.0%
GCACCATGTCTGCAACAAAA+GGG - chr3_3:52852194-52852213 None:intergenic 45.0%
TGCACCATGTCTGCAACAAA+AGG - chr3_3:52852195-52852214 None:intergenic 45.0%
CAGACATGGTGCAAATGTGA+AGG + chr3_3:52852202-52852221 Msa0457750:intron 45.0%
ATGTGAAGGGCTACTATGCA+TGG + chr3_3:52852216-52852235 Msa0457750:CDS 45.0%
TGCATCCCATTCATAGCTGT+CGG - chr3_3:52852249-52852268 None:intergenic 45.0%
ACAGCTATGAATGGGATGCA+GGG + chr3_3:52852249-52852268 Msa0457750:CDS 45.0%
! CAGCCAAAAAGCAGAGTACT+TGG - chr3_3:52852333-52852352 None:intergenic 45.0%
GCTGCAAAAGTTCCTTCTCA+AGG + chr3_3:52852349-52852368 Msa0457750:CDS 45.0%
TCTAGCAACTTAAGGGGGTA+TGG + chr3_3:52852556-52852575 Msa0457750:three_prime_UTR 45.0%
TATCAAGGATCTACTCCCTC+CGG + chr3_3:52852594-52852613 Msa0457750:intron 45.0%
!!! TATTTTTAGATTTTAATTTT+TGG - chr3_3:52846573-52846592 None:intergenic 5.0%
!!! AAATTTAATTCTTTTTATTA+AGG - chr3_3:52847117-52847136 None:intergenic 5.0%
!! TAAATAATAAATATATTGAA+AGG + chr3_3:52847272-52847291 Msa0457750:intron 5.0%
!! TAAACTTATTATTAATTTAA+TGG + chr3_3:52848238-52848257 Msa0457750:intron 5.0%
!!! AATTTAAGTATTTTTTTTTA+AGG + chr3_3:52849197-52849216 Msa0457750:intron 5.0%
!! TCATTTAAAAATAAAAAAAT+CGG - chr3_3:52850303-52850322 None:intergenic 5.0%
!! TATACAAAATATTATATTTA+TGG - chr3_3:52851074-52851093 None:intergenic 5.0%
TTTGCAGCCATGGGAGCTAT+AGG + chr3_3:52845630-52845649 Msa0457750:CDS 50.0%
!! ACCCTTTTGGCTGTTGTCAC+TGG + chr3_3:52845684-52845703 Msa0457750:CDS 50.0%
GAGCCTCAGATATAGATGGG+AGG + chr3_3:52846793-52846812 Msa0457750:CDS 50.0%
GCCTCAGATATAGATGGGAG+GGG + chr3_3:52846795-52846814 Msa0457750:CDS 50.0%
TCCCCTCCCATCTATATCTG+AGG - chr3_3:52846799-52846818 None:intergenic 50.0%
ATGGGAGGGGACCAAGTATA+TGG + chr3_3:52846808-52846827 Msa0457750:CDS 50.0%
TGGGAGGGGACCAAGTATAT+GGG + chr3_3:52846809-52846828 Msa0457750:CDS 50.0%
ATCATATGCAGAGGGCAAGG+GGG + chr3_3:52847657-52847676 Msa0457750:intron 50.0%
! GACCCTAAGGGCACATGTTA+AGG - chr3_3:52848914-52848933 None:intergenic 50.0%
ATGTGCCCTTAGGGTCTGTT+TGG + chr3_3:52848918-52848937 Msa0457750:intron 50.0%
AGCACAACGACGGTAACAAG+TGG - chr3_3:52849378-52849397 None:intergenic 50.0%
TGTTACCGTCGTTGTGCTTG+CGG + chr3_3:52849380-52849399 Msa0457750:intron 50.0%
ACTTTCCGCAAGCACAACGA+CGG - chr3_3:52849388-52849407 None:intergenic 50.0%
TGGCAGGACAAAGAAAGGGT+AGG - chr3_3:52849446-52849465 None:intergenic 50.0%
!! CTTCAAGGAGGTAGTGGAGA+TGG - chr3_3:52851487-52851506 None:intergenic 50.0%
CATCTCCACTACCTCCTTGA+AGG + chr3_3:52851485-52851504 Msa0457750:CDS 50.0%
CGGCATTTACCAGTTGTGCT+AGG - chr3_3:52851815-52851834 None:intergenic 50.0%
! GGTCCCTTTTGTTGCAGACA+TGG + chr3_3:52852188-52852207 Msa0457750:intron 50.0%
GACAGCTATGAATGGGATGC+AGG + chr3_3:52852248-52852267 Msa0457750:CDS 50.0%
GCAGGGTACACAGTACGATT+TGG + chr3_3:52852266-52852285 Msa0457750:CDS 50.0%
! AGCAACTTAAGGGGGTATGG+TGG + chr3_3:52852559-52852578 Msa0457750:three_prime_UTR 50.0%
GGAAGGACCTATAGCTCCCA+TGG - chr3_3:52845640-52845659 None:intergenic 55.0%
AAGGGGGCAGTCAATCCCTT+AGG + chr3_3:52847673-52847692 Msa0457750:CDS 55.0%
GTTGATGTGGTCCATGCGCA+AGG + chr3_3:52849780-52849799 Msa0457750:intron 55.0%
GTGTGTGTCATCCTTGCGCA+TGG - chr3_3:52849794-52849813 None:intergenic 55.0%
GACGTCCGGCCTTGCAATTT+CGG - chr3_3:52851835-52851854 None:intergenic 55.0%
GAGGTCTCAGGTTCGAACTC+AGG - chr3_3:52851862-52851881 None:intergenic 55.0%
CAGGGTCGGGGTTCGAACAT+CGG - chr3_3:52848159-52848178 None:intergenic 60.0%
! ACGGGGTGCTTACAAGTGGG+CGG + chr3_3:52850243-52850262 Msa0457750:intron 60.0%
CGAACTCAGGTCACGACGTC+CGG - chr3_3:52851849-52851868 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 52845542 52852940 52845542 ID=Msa0457750;Name=Msa0457750
chr3_3 mRNA 52845542 52852940 52845542 ID=Msa0457750-mRNA-1;Parent=Msa0457750;Name=Msa0457750-mRNA-1;_AED=0.13;_eAED=0.13;_QI=58|1|1|1|0.92|0.85|14|414|523
chr3_3 exon 52845542 52845806 52845542 ID=Msa0457750-mRNA-1:exon:10216;Parent=Msa0457750-mRNA-1
chr3_3 exon 52846786 52846855 52846786 ID=Msa0457750-mRNA-1:exon:10217;Parent=Msa0457750-mRNA-1
chr3_3 exon 52847158 52847216 52847158 ID=Msa0457750-mRNA-1:exon:10218;Parent=Msa0457750-mRNA-1
chr3_3 exon 52847328 52847403 52847328 ID=Msa0457750-mRNA-1:exon:10219;Parent=Msa0457750-mRNA-1
chr3_3 exon 52847668 52847739 52847668 ID=Msa0457750-mRNA-1:exon:10220;Parent=Msa0457750-mRNA-1
chr3_3 exon 52847851 52847938 52847851 ID=Msa0457750-mRNA-1:exon:10221;Parent=Msa0457750-mRNA-1
chr3_3 exon 52848270 52848522 52848270 ID=Msa0457750-mRNA-1:exon:10222;Parent=Msa0457750-mRNA-1
chr3_3 exon 52850005 52850120 52850005 ID=Msa0457750-mRNA-1:exon:10223;Parent=Msa0457750-mRNA-1
chr3_3 exon 52850505 52850719 52850505 ID=Msa0457750-mRNA-1:exon:10224;Parent=Msa0457750-mRNA-1
chr3_3 exon 52850822 52850853 52850822 ID=Msa0457750-mRNA-1:exon:10225;Parent=Msa0457750-mRNA-1
chr3_3 exon 52851182 52851284 52851182 ID=Msa0457750-mRNA-1:exon:10226;Parent=Msa0457750-mRNA-1
chr3_3 exon 52851405 52851513 52851405 ID=Msa0457750-mRNA-1:exon:10227;Parent=Msa0457750-mRNA-1
chr3_3 exon 52852205 52852599 52852205 ID=Msa0457750-mRNA-1:exon:10228;Parent=Msa0457750-mRNA-1
chr3_3 exon 52852750 52852940 52852750 ID=Msa0457750-mRNA-1:exon:10229;Parent=Msa0457750-mRNA-1
chr3_3 five_prime_UTR 52845542 52845599 52845542 ID=Msa0457750-mRNA-1:five_prime_utr;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52845600 52845806 52845600 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52846786 52846855 52846786 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52847158 52847216 52847158 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52847328 52847403 52847328 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52847668 52847739 52847668 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52847851 52847938 52847851 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52848270 52848522 52848270 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52850005 52850120 52850005 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52850505 52850719 52850505 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52850822 52850853 52850822 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52851182 52851284 52851182 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52851405 52851513 52851405 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 CDS 52852205 52852376 52852205 ID=Msa0457750-mRNA-1:cds;Parent=Msa0457750-mRNA-1
chr3_3 three_prime_UTR 52852377 52852599 52852377 ID=Msa0457750-mRNA-1:three_prime_utr;Parent=Msa0457750-mRNA-1
chr3_3 three_prime_UTR 52852750 52852940 52852750 ID=Msa0457750-mRNA-1:three_prime_utr;Parent=Msa0457750-mRNA-1
Gene Sequence

>Msa0457750

ATGTCACTACTTCATCTTTGGACATCACAATTTGCAGCCATGGGAGCTATAGGTCCTTCCCTTCTCTATCTTTTTTCTCTAGCTACCCTTTTGGCTGTTGTCACTGGAACTGAACCACAAAAAGTGGAACCAAGTCAATATGCTTCATTCAATAGGAGCCTTTTTCCTCATGATTTTCTCTTTGGAATTGGTTCTTCTGCTTACCAGGTAGAAGGAGCCTCAGATATAGATGGGAGGGGACCAAGTATATGGGACACATTCACTAAACAAAATCCAGATAAGATTTGGGACCATAGCAGTGGTAATGTAGGAGCTGATTTTTATCATCGATACAAGGAAGACCTCAAGGTGGTGAAAGAAATTGGTTTGGACTCATACAGATTCTCCATCTCATGGTCAAGAATATTCCCAAAGGGCAAGGGGGCAGTCAATCCCTTAGGAGTTAAATTCTATAACAATCTCATTAATGAGATCCTAGCAAATGGCTTAGTACCCTTTGTAACTCTCTTTCATTGGGATCTCCCACAAGCTCTTGAAGATGAATATAAGGGATTTCTAAGTAAAAATATAGCGAAGGATTTTGCAGCCTATGCTGACTTTTGCTTCAAGACATTTGGAGATAGGGTTAAGCATTGGGTGACACTTAATGAACCTTATTCATACACCATCAATGGATATAATGGTGGTACTTTTGCACCTGGTAGATGTTCTAAATATGTTGCAAATTGCACTACTGGTGACTCAAGTACAGAGCCCTACATTGTTGCTCATAACTTGATACTTTCTCATGCTGCTGCAGTCAGAGTATACAAGAGAAAATATCAGGCTCATCAAAAAGGAAAAATTGGAGTGACCTTAGTGACTCACTTCTTTGAACCATATTCCAATAGTGTTGCTGATAAAAAGGCTGCAGGTCGAGCACTTGACTTCTTTTTTGGATGGTTTGCTCATCCCATTACATATGGCCATTATCCCCAAATTATGATATCTTTGTTGGGTAAAAGACTCCCCAAATTCACAAAACTAGAATCTGTAATTATCAAAGATTCCTATGATTTTCTTGGTGTGAATTATTACTCCACATATTATGCACAAAGCAGTGCACCAAAAAATGTCGAAATGGACTACTACTCTGATATGCAAGCAACTGTCTCTCCATTGAAGAATGGTGTATCTATTGGTCCCTCGACTGATTTGACTTGGCTCTATGTCTATCCAAAGGGAATTCATGATCTTGTTACACACATAAAAAATGTATACAAGAATCCACCAGTGTACATTACTGAAAATGGCATTGCTACATATAGGAATGACTCAATTCCAGTCAATGTAGCTCGTAAAGATGGTATTAGGATTAAATACCATAATGACCATCTCCACTACCTCCTTGAAGGAATAAAACATGGTGCAAATGTGAAGGGCTACTATGCATGGTCATTTTCCGACAGCTATGAATGGGATGCAGGGTACACAGTACGATTTGGAATAATTTATGTAGATTTCGTTAACAATTTGAAAAGATATCCCAAGTACTCTGCTTTTTGGCTGCAAAAGTTCCTTCTCAAGGGATGA
Protein sequence

>Msa0457750

MSLLHLWTSQFAAMGAIGPSLLYLFSLATLLAVVTGTEPQKVEPSQYASFNRSLFPHDFLFGIGSSAYQVEGASDIDGRGPSIWDTFTKQNPDKIWDHSSGNVGADFYHRYKEDLKVVKEIGLDSYRFSISWSRIFPKGKGAVNPLGVKFYNNLINEILANGLVPFVTLFHWDLPQALEDEYKGFLSKNIAKDFAAYADFCFKTFGDRVKHWVTLNEPYSYTINGYNGGTFAPGRCSKYVANCTTGDSSTEPYIVAHNLILSHAAAVRVYKRKYQAHQKGKIGVTLVTHFFEPYSNSVADKKAAGRALDFFFGWFAHPITYGHYPQIMISLLGKRLPKFTKLESVIIKDSYDFLGVNYYSTYYAQSSAPKNVEMDYYSDMQATVSPLKNGVSIGPSTDLTWLYVYPKGIHDLVTHIKNVYKNPPVYITENGIATYRNDSIPVNVARKDGIRIKYHNDHLHYLLEGIKHGANVKGYYAWSFSDSYEWDAGYTVRFGIIYVDFVNNLKRYPKYSAFWLQKFLLKG*