AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124070 MtrunA17_Chr1g0184951 95.851 241 6 1 1 237 107 347 8.29e-172 476
Msa0124070 MtrunA17_Chr1g0188121 85.062 241 32 1 1 237 100 340 3.52e-141 399
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124070 AT3G63410.1 88.843 242 22 2 1 237 97 338 1.19e-144 407

Find 93 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACTCCACGATACCATTT+TGG 0.111746 1_3:-51568471 None:intergenic
AACCAAACCCATTTCCATTT+TGG 0.136694 1_3:-51567154 None:intergenic
TCGATATACTCTTCTTCTTT+AGG 0.193738 1_3:-51568399 None:intergenic
CAAGAATCAATGCTAAAATT+AGG 0.196925 1_3:+51567222 Msa0124070:five_prime_UTR
TCGCCGTCATGGCTTGATTA+TGG 0.203458 1_3:+51568491 Msa0124070:CDS
GTTTACGAAGGCAGGGTTTA+AGG 0.206012 1_3:+51568425 Msa0124070:CDS
CGATATACTCTTCTTCTTTA+GGG 0.222755 1_3:-51568398 None:intergenic
CTCTCAGATTGGCTGATCTT+TGG 0.227283 1_3:-51569990 None:intergenic
TACAATGTTTCTCTTCAAAT+TGG 0.240007 1_3:-51567249 None:intergenic
GTCCTGTCTACCCGACATTT+TGG 0.244718 1_3:+51568340 Msa0124070:CDS
TTGAATTGCAAAACCCAAAA+TGG 0.251263 1_3:+51567140 Msa0124070:five_prime_UTR
CGCCGTCATGGCTTGATTAT+GGG 0.259408 1_3:+51568492 Msa0124070:CDS
ATCTGGGGATTCTCCTTTGC+AGG 0.267355 1_3:+51568542 Msa0124070:CDS
CGCGTTTCTTCGCAGATGTT+TGG 0.268470 1_3:+51568367 Msa0124070:intron
TTAAGGATGTCCAGCTAAAA+AGG 0.270534 1_3:+51568442 Msa0124070:CDS
ACAAGTGGACTTATAAAATA+AGG 0.279635 1_3:-51570221 None:intergenic
TCTCAGATTGGCTGATCTTT+GGG 0.280706 1_3:-51569989 None:intergenic
AAGAAGACAAAGGGATTTAC+AGG 0.286308 1_3:-51569884 None:intergenic
TTCTTACTGCGCTTTGCCTT+GGG 0.316900 1_3:+51569902 Msa0124070:CDS
TCTTTGAGCCACATGTAAAT+AGG 0.317118 1_3:-51569956 None:intergenic
CTTCTTACTGCGCTTTGCCT+TGG 0.324170 1_3:+51569901 Msa0124070:CDS
AAGAATCAATGCTAAAATTA+GGG 0.329851 1_3:+51567223 Msa0124070:five_prime_UTR
TGTTTCTCAGCATTGAATAC+TGG 0.338472 1_3:+51568247 Msa0124070:intron
TGCAAAACCCAAAATGGAAA+TGG 0.342940 1_3:+51567146 Msa0124070:five_prime_UTR
GTTGATGTTGGTGGTGGTAC+TGG 0.349346 1_3:+51567469 Msa0124070:CDS
ACTGGTGTTAAGCCTGCATC+TGG 0.356332 1_3:+51568525 Msa0124070:CDS
ACCCAAAATGGAAATGGGTT+TGG 0.363731 1_3:+51567152 Msa0124070:five_prime_UTR
CCAATCTGAGAGAGATTTGT+AGG 0.373317 1_3:+51570001 Msa0124070:exon
TTGATGCCACGCTGTGGATC+TGG 0.384823 1_3:-51568270 None:intergenic
GGTACTGGTTTCACTACATT+GGG 0.400200 1_3:+51567484 Msa0124070:CDS
ATAAACCTGGGTTGTGAACT+TGG 0.409316 1_3:-51567305 None:intergenic
AAGGATTGTAAAATTGTTGA+AGG 0.409383 1_3:+51567595 Msa0124070:CDS
AAAGCAAAAGGAACCACTTA+AGG 0.411490 1_3:+51567576 Msa0124070:CDS
AATATGCTTGTTGTTGATGT+TGG 0.423767 1_3:+51567457 Msa0124070:CDS
ATCGAGTGGTTTACGAAGGC+AGG 0.431658 1_3:+51568417 Msa0124070:CDS
ATTATGGGTTGTTCTGTGAC+TGG 0.435412 1_3:+51568507 Msa0124070:CDS
GCAAAACCCAAAATGGAAAT+GGG 0.445634 1_3:+51567147 Msa0124070:five_prime_UTR
CATGTTATAAACCCGGTCAT+TGG 0.452332 1_3:+51567383 Msa0124070:five_prime_UTR
ATGCTTGTTGTTGATGTTGG+TGG 0.461058 1_3:+51567460 Msa0124070:CDS
GGAAATGGGTTTGGTTTCAC+AGG 0.462226 1_3:+51567161 Msa0124070:five_prime_UTR
AACCAAAATGTCGGGTAGAC+AGG 0.473847 1_3:-51568342 None:intergenic
TGGGCGTCCTAGCAGCTTCG+TGG 0.475392 1_3:+51569921 Msa0124070:CDS
TTCCTATCAGTAAGTTCAGC+TGG 0.478104 1_3:-51567436 None:intergenic
TGGTACTGGTTTCACTACAT+TGG 0.488035 1_3:+51567483 Msa0124070:CDS
CATATCTTCAGTCCAATGAC+CGG 0.490893 1_3:-51567395 None:intergenic
AGGATTGTAAAATTGTTGAA+GGG 0.496213 1_3:+51567596 Msa0124070:CDS
GTGGCATCAAGGAAGCATAC+AGG 0.498940 1_3:+51568283 Msa0124070:CDS
TTCACAGGTTCAGATTTCAA+TGG 0.502460 1_3:+51567176 Msa0124070:five_prime_UTR
CCTACAAATCTCTCTCAGAT+TGG 0.504843 1_3:-51570001 None:intergenic
CTTGTTGTTGATGTTGGTGG+TGG 0.511570 1_3:+51567463 Msa0124070:CDS
AACCAGCTGAACTTACTGAT+AGG 0.522090 1_3:+51567434 Msa0124070:CDS
TTTGCTGCAGCTTGGTCCAA+AGG 0.523778 1_3:+51569844 Msa0124070:intron
CTGGTGTTAAGCCTGCATCT+GGG 0.528996 1_3:+51568526 Msa0124070:CDS
AACGCGACAACCAAAATGTC+GGG 0.531908 1_3:-51568350 None:intergenic
GCTTGCTAAAGCAAAGCAAA+AGG 0.534201 1_3:+51567564 Msa0124070:CDS
TATTGATTCCTATTTACATG+TGG 0.537530 1_3:+51569948 Msa0124070:CDS
AAAGGAGAATCCCCAGATGC+AGG 0.539061 1_3:-51568537 None:intergenic
AGATCCACAGCGTGGCATCA+AGG 0.554562 1_3:+51568272 Msa0124070:CDS
TATCGTGGAGTTCGCCGTCA+TGG 0.558525 1_3:+51568480 Msa0124070:CDS
GGATTGTAAAATTGTTGAAG+GGG 0.558559 1_3:+51567597 Msa0124070:CDS
AAGCGCAGTAAGAAGACAAA+GGG 0.559888 1_3:-51569893 None:intergenic
TGGTGTTAAGCCTGCATCTG+GGG 0.564309 1_3:+51568527 Msa0124070:CDS
ATACAAACCACGAAGCTGCT+AGG 0.565899 1_3:-51569928 None:intergenic
CAATGACCGGGTTTATAACA+TGG 0.576398 1_3:-51567382 None:intergenic
AAGATGACAAATACCTGCAA+AGG 0.577073 1_3:-51568555 None:intergenic
GCTGATAGATATGTGTCCGC+TGG 0.579059 1_3:+51567652 Msa0124070:CDS
TCAGCATAATCAGTTCGAAA+GGG 0.581535 1_3:-51567634 None:intergenic
ATCAGCATAATCAGTTCGAA+AGG 0.586784 1_3:-51567635 None:intergenic
TCGAGTGGTTTACGAAGGCA+GGG 0.588098 1_3:+51568418 Msa0124070:CDS
GAATTGAGGTTACCGAGTAG+TGG 0.589175 1_3:-51566954 None:intergenic
CAAGACCAAGTTCACAACCC+AGG 0.594018 1_3:+51567300 Msa0124070:five_prime_UTR
TTTGCTTTAGCAAGCTGATG+AGG 0.594550 1_3:-51567556 None:intergenic
ATAGATATGTGTCCGCTGGA+AGG 0.594629 1_3:+51567656 Msa0124070:CDS
TGGCATCAAGGAAGCATACA+GGG 0.598551 1_3:+51568284 Msa0124070:CDS
AAAGCGCAGTAAGAAGACAA+AGG 0.601046 1_3:-51569894 None:intergenic
CGAAGCTGCTAGGACGCCCA+AGG 0.601692 1_3:-51569918 None:intergenic
ATATCTTCAGTCCAATGACC+GGG 0.606141 1_3:-51567394 None:intergenic
AACCCATAATCAAGCCATGA+CGG 0.615385 1_3:-51568494 None:intergenic
AAACGCGACAACCAAAATGT+CGG 0.616259 1_3:-51568351 None:intergenic
TTTAGAGGAGGTCCTTACGA+AGG 0.619192 1_3:-51566705 None:intergenic
GTGTAAGATTATTACATATG+CGG 0.628265 1_3:+51570073 Msa0124070:three_prime_UTR
GCAGAAGATTGAAACGAAGG+TGG 0.638476 1_3:-51566897 None:intergenic
GCTTCCTTGATGCCACGCTG+TGG 0.644008 1_3:-51568276 None:intergenic
ACTCTCTCTCTACCACTACT+CGG 0.650592 1_3:+51566942 Msa0124070:five_prime_UTR
GTAGTGGTAGAGAGAGAGTG+AGG 0.655128 1_3:-51566938 None:intergenic
GTATGACCATGTTATAAACC+CGG 0.668454 1_3:+51567376 Msa0124070:five_prime_UTR
ATTGGCCCAAAATGGTATCG+TGG 0.672762 1_3:+51568465 Msa0124070:CDS
GTAGCAGAAGATTGAAACGA+AGG 0.677715 1_3:-51566900 None:intergenic
GTATATCGAGTGGTTTACGA+AGG 0.686187 1_3:+51568413 Msa0124070:CDS
ATGGCTTCACTAATGCTCAG+TGG 0.694171 1_3:+51567098 Msa0124070:five_prime_UTR
AAGAAGAAGAGTATATCGAG+TGG 0.708626 1_3:+51568403 Msa0124070:CDS
GACATCGATATACCTTCCAG+CGG 0.718494 1_3:-51567668 None:intergenic
TACTGGCCAGATCCACAGCG+TGG 0.734186 1_3:+51568264 Msa0124070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAAAAACAATGT+CGG - chr1_3:51566741-51566760 None:intergenic 10.0%
!!! TTTAATTTTATTTTCAATTG+CGG + chr1_3:51569484-51569503 Msa0124070:intron 10.0%
!!! TATTTTATCAAATTTCATAA+TGG + chr1_3:51570104-51570123 Msa0124070:three_prime_UTR 10.0%
!!! GCTTAGTTTTTTTTTTTTTT+TGG + chr1_3:51568045-51568064 Msa0124070:intron 15.0%
!! ATAAAATTAAAAAACATACC+TGG - chr1_3:51569475-51569494 None:intergenic 15.0%
!!! TTAATTTTATTTTCAATTGC+GGG + chr1_3:51569485-51569504 Msa0124070:intron 15.0%
!!! TGAATTTTTCACATTAGAAT+GGG - chr1_3:51567036-51567055 None:intergenic 20.0%
!!! GATTTTGTAGATTAATTCAA+TGG + chr1_3:51567079-51567098 Msa0124070:intron 20.0%
!! AAGAATCAATGCTAAAATTA+GGG + chr1_3:51567223-51567242 Msa0124070:five_prime_UTR 20.0%
!! AACCATGCATAATTATTTAA+AGG - chr1_3:51567725-51567744 None:intergenic 20.0%
!! CTATAACAAGAGAAAAATAA+AGG - chr1_3:51567946-51567965 None:intergenic 20.0%
!! TTTGATTAAGCATAAAAGAA+GGG - chr1_3:51568611-51568630 None:intergenic 20.0%
!! ATTTGATTAAGCATAAAAGA+AGG - chr1_3:51568612-51568631 None:intergenic 20.0%
!! TTTATGCTTAATCAAATCAA+AGG + chr1_3:51568615-51568634 Msa0124070:intron 20.0%
!! GAATAATAGATAGAAAAAAG+AGG - chr1_3:51568952-51568971 None:intergenic 20.0%
!!! ATTTTTACATGAAATGACTA+TGG + chr1_3:51569087-51569106 Msa0124070:intron 20.0%
!! AAGTTTAACCATATTAAATG+TGG + chr1_3:51569228-51569247 Msa0124070:intron 20.0%
!! ATCATGTTTGATATTTAAGT+TGG + chr1_3:51569268-51569287 Msa0124070:intron 20.0%
!! TGATTTATTATTGTTAAGTG+TGG + chr1_3:51569369-51569388 Msa0124070:intron 20.0%
!!! GAATATAGAGATTTTGATTT+AGG - chr1_3:51569660-51569679 None:intergenic 20.0%
!!! AAGGTTTTTTTTGTTGTTGA+AGG - chr1_3:51566689-51566708 None:intergenic 25.0%
!!! AAAATCAAGTTTTGAGTATG+TGG + chr1_3:51566805-51566824 Msa0124070:five_prime_UTR 25.0%
!!! AAAAGTGAATTTGAGTTGAA+AGG - chr1_3:51566998-51567017 None:intergenic 25.0%
!! GTGAATTTTTCACATTAGAA+TGG - chr1_3:51567037-51567056 None:intergenic 25.0%
!!! TAGCATTGATTCTTGTTTTT+GGG - chr1_3:51567217-51567236 None:intergenic 25.0%
!!! TTAGCATTGATTCTTGTTTT+TGG - chr1_3:51567218-51567237 None:intergenic 25.0%
! CAAGAATCAATGCTAAAATT+AGG + chr1_3:51567222-51567241 Msa0124070:five_prime_UTR 25.0%
! TACAATGTTTCTCTTCAAAT+TGG - chr1_3:51567252-51567271 None:intergenic 25.0%
!! TTTTTGTGTTGTATAAACCT+GGG - chr1_3:51567320-51567339 None:intergenic 25.0%
!!! TTTTTTGTGTTGTATAAACC+TGG - chr1_3:51567321-51567340 None:intergenic 25.0%
!!! AACACAAAAAAGAAGCATTT+TGG + chr1_3:51567330-51567349 Msa0124070:five_prime_UTR 25.0%
!!! AAGAAGCATTTTGGTTTTAT+AGG + chr1_3:51567339-51567358 Msa0124070:five_prime_UTR 25.0%
!! ACAATTTTACAATCCTTAAG+TGG - chr1_3:51567592-51567611 None:intergenic 25.0%
! AAGGATTGTAAAATTGTTGA+AGG + chr1_3:51567595-51567614 Msa0124070:CDS 25.0%
! AGGATTGTAAAATTGTTGAA+GGG + chr1_3:51567596-51567615 Msa0124070:CDS 25.0%
! AAGTGTACATAGATATAAAG+TGG + chr1_3:51568109-51568128 Msa0124070:intron 25.0%
!! AATCAAAGGTATGTTGTATA+AGG + chr1_3:51568629-51568648 Msa0124070:intron 25.0%
! CATAAACACTATATGCTTTA+CGG + chr1_3:51568732-51568751 Msa0124070:intron 25.0%
! GAAAAAAGAGGTAAACTTAA+AGG - chr1_3:51568940-51568959 None:intergenic 25.0%
! TCAGTAAGCATATAGATATA+GGG - chr1_3:51569068-51569087 None:intergenic 25.0%
! ATCAGTAAGCATATAGATAT+AGG - chr1_3:51569069-51569088 None:intergenic 25.0%
!!! ATGTTTGATATTTAAGTTGG+AGG + chr1_3:51569271-51569290 Msa0124070:intron 25.0%
!! AGTTGATATCAATGTAGATA+TGG + chr1_3:51569447-51569466 Msa0124070:intron 25.0%
! GTTGATATCAATGTAGATAT+GGG + chr1_3:51569448-51569467 Msa0124070:intron 25.0%
!!! TATTGATTCCTATTTACATG+TGG + chr1_3:51569948-51569967 Msa0124070:CDS 25.0%
! AAAACGTTGAAAAAAAGACA+CGG - chr1_3:51570048-51570067 None:intergenic 25.0%
! GTGTAAGATTATTACATATG+CGG + chr1_3:51570073-51570092 Msa0124070:three_prime_UTR 25.0%
CAACAAAAAAAACCTTCGTA+AGG + chr1_3:51566693-51566712 Msa0124070:five_prime_UTR 30.0%
!! GAATTTGAGTTGAAAGGAAT+GGG - chr1_3:51566992-51567011 None:intergenic 30.0%
!! TGAATTTGAGTTGAAAGGAA+TGG - chr1_3:51566993-51567012 None:intergenic 30.0%
TTGAATTGCAAAACCCAAAA+TGG + chr1_3:51567140-51567159 Msa0124070:five_prime_UTR 30.0%
!!! AGCATTGATTCTTGTTTTTG+GGG - chr1_3:51567216-51567235 None:intergenic 30.0%
!! AATATGCTTGTTGTTGATGT+TGG + chr1_3:51567457-51567476 Msa0124070:CDS 30.0%
GGATTGTAAAATTGTTGAAG+GGG + chr1_3:51567597-51567616 Msa0124070:CDS 30.0%
CGCCTTTAAATAATTATGCA+TGG + chr1_3:51567720-51567739 Msa0124070:intron 30.0%
TCAAATAAGCCAATCCAAAT+AGG - chr1_3:51567805-51567824 None:intergenic 30.0%
! TGTTTTCGTATAAGCTATCT+TGG - chr1_3:51567918-51567937 None:intergenic 30.0%
!! AAAGTAGATTGCTTTGAAAG+AGG + chr1_3:51568205-51568224 Msa0124070:intron 30.0%
!!! CATACAGGGTTTTGAAATTT+GGG + chr1_3:51568298-51568317 Msa0124070:CDS 30.0%
!!! ATACAGGGTTTTGAAATTTG+GGG + chr1_3:51568299-51568318 Msa0124070:CDS 30.0%
CGATATACTCTTCTTCTTTA+GGG - chr1_3:51568401-51568420 None:intergenic 30.0%
TCGATATACTCTTCTTCTTT+AGG - chr1_3:51568402-51568421 None:intergenic 30.0%
!! TATAAGGTTGTTTCTCCTTA+TGG + chr1_3:51568645-51568664 Msa0124070:intron 30.0%
CGTAAAGCATATAGTGTTTA+TGG - chr1_3:51568734-51568753 None:intergenic 30.0%
TTGAAATAGTCATCAGTTGA+GGG - chr1_3:51568785-51568804 None:intergenic 30.0%
! TTTGAAATAGTCATCAGTTG+AGG - chr1_3:51568786-51568805 None:intergenic 30.0%
!!! TGTAAATCCCCTTTTTTATC+CGG + chr1_3:51568882-51568901 Msa0124070:intron 30.0%
AAGAGGTAAACTTAAAGGAT+GGG - chr1_3:51568935-51568954 None:intergenic 30.0%
AAAGAGGTAAACTTAAAGGA+TGG - chr1_3:51568936-51568955 None:intergenic 30.0%
CCAACAAAAAAACATGTACA+GGG - chr1_3:51569020-51569039 None:intergenic 30.0%
TCCAACAAAAAAACATGTAC+AGG - chr1_3:51569021-51569040 None:intergenic 30.0%
GGAAGTTTCCACATTTAATA+TGG - chr1_3:51569239-51569258 None:intergenic 30.0%
ATCAAACATGATCACTTCAA+TGG - chr1_3:51569260-51569279 None:intergenic 30.0%
CATAAGGATTACAATTGGTA+GGG - chr1_3:51569544-51569563 None:intergenic 30.0%
ACATAAGGATTACAATTGGT+AGG - chr1_3:51569545-51569564 None:intergenic 30.0%
CAAGACATAAGGATTACAAT+TGG - chr1_3:51569549-51569568 None:intergenic 30.0%
CAATTGTAATCCTTATGTCT+TGG + chr1_3:51569547-51569566 Msa0124070:intron 30.0%
GAGTTATGAACAAAACACTA+CGG + chr1_3:51569586-51569605 Msa0124070:intron 30.0%
ATTCAGCTTAACAAAGCTAT+AGG + chr1_3:51569676-51569695 Msa0124070:intron 30.0%
TAACAAAGCTATAGGATTTG+AGG + chr1_3:51569684-51569703 Msa0124070:intron 30.0%
! TTTTCAACATCTTCTTCCTT+TGG - chr1_3:51569863-51569882 None:intergenic 30.0%
! TTTTTCTGCAAGCTTTTTAC+AGG + chr1_3:51570162-51570181 Msa0124070:three_prime_UTR 30.0%
!!! GGTTTTATTAGACATTTCCA+GGG - chr1_3:51570203-51570222 None:intergenic 30.0%
!!! AGGTTTTATTAGACATTTCC+AGG - chr1_3:51570204-51570223 None:intergenic 30.0%
! GGACCTCCTCTAAAAAAAAT+TGG + chr1_3:51566714-51566733 Msa0124070:five_prime_UTR 35.0%
!!! GGTCCAATTTTTTTTAGAGG+AGG - chr1_3:51566720-51566739 None:intergenic 35.0%
!!! GTCGGTCCAATTTTTTTTAG+AGG - chr1_3:51566723-51566742 None:intergenic 35.0%
GGAAATTTAGCAGAGAATTG+AGG - chr1_3:51566971-51566990 None:intergenic 35.0%
TGCAAAACCCAAAATGGAAA+TGG + chr1_3:51567146-51567165 Msa0124070:five_prime_UTR 35.0%
GCAAAACCCAAAATGGAAAT+GGG + chr1_3:51567147-51567166 Msa0124070:five_prime_UTR 35.0%
! ACCAAACCCATTTCCATTTT+GGG - chr1_3:51567156-51567175 None:intergenic 35.0%
! AACCAAACCCATTTCCATTT+TGG - chr1_3:51567157-51567176 None:intergenic 35.0%
TTCACAGGTTCAGATTTCAA+TGG + chr1_3:51567176-51567195 Msa0124070:five_prime_UTR 35.0%
GTATGACCATGTTATAAACC+CGG + chr1_3:51567376-51567395 Msa0124070:five_prime_UTR 35.0%
AAAGCAAAAGGAACCACTTA+AGG + chr1_3:51567576-51567595 Msa0124070:CDS 35.0%
TCAGCATAATCAGTTCGAAA+GGG - chr1_3:51567637-51567656 None:intergenic 35.0%
ATCAGCATAATCAGTTCGAA+AGG - chr1_3:51567638-51567657 None:intergenic 35.0%
! TGTTCTTCTTGATGACTGTT+AGG + chr1_3:51567778-51567797 Msa0124070:intron 35.0%
! GTTCTTCTTGATGACTGTTA+GGG + chr1_3:51567779-51567798 Msa0124070:intron 35.0%
GCTTATTTGAGCTCATTTAC+TGG + chr1_3:51567815-51567834 Msa0124070:intron 35.0%
AAAAAAACTAAGCCACTGCT+TGG - chr1_3:51568038-51568057 None:intergenic 35.0%
TGCAAATACACCTCTTTCAA+AGG - chr1_3:51568138-51568157 None:intergenic 35.0%
! TGTTTCTCAGCATTGAATAC+TGG + chr1_3:51568247-51568266 Msa0124070:intron 35.0%
!!! GCATACAGGGTTTTGAAATT+TGG + chr1_3:51568297-51568316 Msa0124070:CDS 35.0%
!!! TACAGGGTTTTGAAATTTGG+GGG + chr1_3:51568300-51568319 Msa0124070:CDS 35.0%
! AAGAAGAAGAGTATATCGAG+TGG + chr1_3:51568403-51568422 Msa0124070:CDS 35.0%
TTAAGGATGTCCAGCTAAAA+AGG + chr1_3:51568442-51568461 Msa0124070:CDS 35.0%
!! TAAAAAGGATTGGCCCAAAA+TGG + chr1_3:51568457-51568476 Msa0124070:CDS 35.0%
AAGATGACAAATACCTGCAA+AGG - chr1_3:51568558-51568577 None:intergenic 35.0%
TCAGTAAGTCATAACATGGT+AGG - chr1_3:51568711-51568730 None:intergenic 35.0%
ATGGTCAGTAAGTCATAACA+TGG - chr1_3:51568715-51568734 None:intergenic 35.0%
AAACACTATATGCTTTACGG+TGG + chr1_3:51568735-51568754 Msa0124070:intron 35.0%
AACACTATATGCTTTACGGT+GGG + chr1_3:51568736-51568755 Msa0124070:intron 35.0%
GTAGGCACATCTAATCTAAA+AGG - chr1_3:51568829-51568848 None:intergenic 35.0%
GTTCCTAAAATGTTGCAAGT+AGG - chr1_3:51568847-51568866 None:intergenic 35.0%
GTAAACTTAAAGGATGGGAT+AGG - chr1_3:51568930-51568949 None:intergenic 35.0%
!!! CCCTGTACATGTTTTTTTGT+TGG + chr1_3:51569017-51569036 Msa0124070:intron 35.0%
CACACACAGATACTACAAAA+AGG - chr1_3:51569161-51569180 None:intergenic 35.0%
AGTTTAGTACCCAACAAGTA+TGG + chr1_3:51569417-51569436 Msa0124070:intron 35.0%
GTTTAGTACCCAACAAGTAT+GGG + chr1_3:51569418-51569437 Msa0124070:intron 35.0%
CTTCAATACCCATACTTGTT+GGG - chr1_3:51569429-51569448 None:intergenic 35.0%
ACTTCAATACCCATACTTGT+TGG - chr1_3:51569430-51569449 None:intergenic 35.0%
!! TTTATTTTCAATTGCGGGCA+TGG + chr1_3:51569490-51569509 Msa0124070:intron 35.0%
ACTTACACTTCCAAGACATA+AGG - chr1_3:51569560-51569579 None:intergenic 35.0%
CAATAGCCTTCAATGTTAAC+TGG + chr1_3:51569613-51569632 Msa0124070:intron 35.0%
CACTTATTACTTCCTTGCAT+TGG + chr1_3:51569741-51569760 Msa0124070:intron 35.0%
AAGAAGACAAAGGGATTTAC+AGG - chr1_3:51569887-51569906 None:intergenic 35.0%
TCTTTGAGCCACATGTAAAT+AGG - chr1_3:51569959-51569978 None:intergenic 35.0%
ATGAAAAACTGATCTCAACG+AGG - chr1_3:51570142-51570161 None:intergenic 35.0%
! GGTCATACTAATTTTATCCC+TGG + chr1_3:51570183-51570202 Msa0124070:three_prime_UTR 35.0%
GTAGCAGAAGATTGAAACGA+AGG - chr1_3:51566903-51566922 None:intergenic 40.0%
! ACCCAAAATGGAAATGGGTT+TGG + chr1_3:51567152-51567171 Msa0124070:five_prime_UTR 40.0%
ATAAACCTGGGTTGTGAACT+TGG - chr1_3:51567308-51567327 None:intergenic 40.0%
CAATGACCGGGTTTATAACA+TGG - chr1_3:51567385-51567404 None:intergenic 40.0%
CATGTTATAAACCCGGTCAT+TGG + chr1_3:51567383-51567402 Msa0124070:five_prime_UTR 40.0%
ATATCTTCAGTCCAATGACC+GGG - chr1_3:51567397-51567416 None:intergenic 40.0%
CATATCTTCAGTCCAATGAC+CGG - chr1_3:51567398-51567417 None:intergenic 40.0%
AACCAGCTGAACTTACTGAT+AGG + chr1_3:51567434-51567453 Msa0124070:CDS 40.0%
TTCCTATCAGTAAGTTCAGC+TGG - chr1_3:51567439-51567458 None:intergenic 40.0%
!! ATGCTTGTTGTTGATGTTGG+TGG + chr1_3:51567460-51567479 Msa0124070:CDS 40.0%
!! TGGTACTGGTTTCACTACAT+TGG + chr1_3:51567483-51567502 Msa0124070:CDS 40.0%
!! GGTACTGGTTTCACTACATT+GGG + chr1_3:51567484-51567503 Msa0124070:CDS 40.0%
TTTGCTTTAGCAAGCTGATG+AGG - chr1_3:51567559-51567578 None:intergenic 40.0%
! GCTTGCTAAAGCAAAGCAAA+AGG + chr1_3:51567564-51567583 Msa0124070:CDS 40.0%
! TAAAGGCGTATGAAACAGCA+TGG - chr1_3:51567708-51567727 None:intergenic 40.0%
CAGCTACAAGATTGCAACAA+AGG - chr1_3:51568080-51568099 None:intergenic 40.0%
! AAAGTGGCTTCCTTTGAAAG+AGG + chr1_3:51568125-51568144 Msa0124070:intron 40.0%
AAACGCGACAACCAAAATGT+CGG - chr1_3:51568354-51568373 None:intergenic 40.0%
GTATATCGAGTGGTTTACGA+AGG + chr1_3:51568413-51568432 Msa0124070:CDS 40.0%
GATGTCCAGCTAAAAAGGAT+TGG + chr1_3:51568447-51568466 Msa0124070:CDS 40.0%
! GAACTCCACGATACCATTTT+GGG - chr1_3:51568473-51568492 None:intergenic 40.0%
AACCCATAATCAAGCCATGA+CGG - chr1_3:51568497-51568516 None:intergenic 40.0%
! ATTATGGGTTGTTCTGTGAC+TGG + chr1_3:51568507-51568526 Msa0124070:CDS 40.0%
TGAAAAAACAGACACACACC+AGG - chr1_3:51568674-51568693 None:intergenic 40.0%
!!! GGTGTGTGTCTGTTTTTTCA+AGG + chr1_3:51568674-51568693 Msa0124070:intron 40.0%
GTCATAACATGGTAGGTATC+AGG - chr1_3:51568704-51568723 None:intergenic 40.0%
! GTGCCTACTTGCAACATTTT+AGG + chr1_3:51568841-51568860 Msa0124070:intron 40.0%
AGGTACTCCGGATAAAAAAG+GGG - chr1_3:51568892-51568911 None:intergenic 40.0%
CAGGTACTCCGGATAAAAAA+GGG - chr1_3:51568893-51568912 None:intergenic 40.0%
TCAGGTACTCCGGATAAAAA+AGG - chr1_3:51568894-51568913 None:intergenic 40.0%
ATAGGTTCTCAAATGTGCTC+AGG - chr1_3:51568912-51568931 None:intergenic 40.0%
TTGGAGGAAAACTAGTTCCT+GGG + chr1_3:51569287-51569306 Msa0124070:intron 40.0%
ATCAATGTAGATATGGGTCC+AGG + chr1_3:51569454-51569473 Msa0124070:intron 40.0%
! TCTTGGAAGTGTAAGTAGCA+TGG + chr1_3:51569564-51569583 Msa0124070:intron 40.0%
AAGCGCAGTAAGAAGACAAA+GGG - chr1_3:51569896-51569915 None:intergenic 40.0%
AAAGCGCAGTAAGAAGACAA+AGG - chr1_3:51569897-51569916 None:intergenic 40.0%
! TCTCAGATTGGCTGATCTTT+GGG - chr1_3:51569992-51570011 None:intergenic 40.0%
CCTACAAATCTCTCTCAGAT+TGG - chr1_3:51570004-51570023 None:intergenic 40.0%
CCAATCTGAGAGAGATTTGT+AGG + chr1_3:51570001-51570020 Msa0124070:exon 40.0%
TTTAGAGGAGGTCCTTACGA+AGG - chr1_3:51566708-51566727 None:intergenic 45.0%
GCAGAAGATTGAAACGAAGG+TGG - chr1_3:51566900-51566919 None:intergenic 45.0%
ACTCTCTCTCTACCACTACT+CGG + chr1_3:51566942-51566961 Msa0124070:five_prime_UTR 45.0%
GAATTGAGGTTACCGAGTAG+TGG - chr1_3:51566957-51566976 None:intergenic 45.0%
ATGGCTTCACTAATGCTCAG+TGG + chr1_3:51567098-51567117 Msa0124070:five_prime_UTR 45.0%
! GGAAATGGGTTTGGTTTCAC+AGG + chr1_3:51567161-51567180 Msa0124070:five_prime_UTR 45.0%
!! CTTGTTGTTGATGTTGGTGG+TGG + chr1_3:51567463-51567482 Msa0124070:CDS 45.0%
ATAGATATGTGTCCGCTGGA+AGG + chr1_3:51567656-51567675 Msa0124070:CDS 45.0%
GACATCGATATACCTTCCAG+CGG - chr1_3:51567671-51567690 None:intergenic 45.0%
GATGACTGTTAGGGCCTATT+TGG + chr1_3:51567788-51567807 Msa0124070:intron 45.0%
CTGTTAGGGCCTATTTGGAT+TGG + chr1_3:51567793-51567812 Msa0124070:intron 45.0%
TAAGCTGTTTAGCCAAGCAG+TGG + chr1_3:51568023-51568042 Msa0124070:intron 45.0%
! TGGCATCAAGGAAGCATACA+GGG + chr1_3:51568284-51568303 Msa0124070:CDS 45.0%
GGGGGCAAAGCATGTTTAAT+TGG + chr1_3:51568318-51568337 Msa0124070:CDS 45.0%
AACCAAAATGTCGGGTAGAC+AGG - chr1_3:51568345-51568364 None:intergenic 45.0%
AACGCGACAACCAAAATGTC+GGG - chr1_3:51568353-51568372 None:intergenic 45.0%
GTTTACGAAGGCAGGGTTTA+AGG + chr1_3:51568425-51568444 Msa0124070:CDS 45.0%
!! TTGGGCCAATCCTTTTTAGC+TGG - chr1_3:51568455-51568474 None:intergenic 45.0%
ATTGGCCCAAAATGGTATCG+TGG + chr1_3:51568465-51568484 Msa0124070:CDS 45.0%
! CGAACTCCACGATACCATTT+TGG - chr1_3:51568474-51568493 None:intergenic 45.0%
TGTTTCTCCTTATGGTGTCC+TGG + chr1_3:51568653-51568672 Msa0124070:intron 45.0%
TCAAATGTGCTCAGGTACTC+CGG - chr1_3:51568904-51568923 None:intergenic 45.0%
GTTGGAGGAAAACTAGTTCC+TGG + chr1_3:51569286-51569305 Msa0124070:intron 45.0%
! CCATTTTCTTTACCATGCCC+AGG - chr1_3:51569307-51569326 None:intergenic 45.0%
CCTGGGCATGGTAAAGAAAA+TGG + chr1_3:51569304-51569323 Msa0124070:intron 45.0%
GCCTTCAATGTTAACTGGTC+AGG + chr1_3:51569618-51569637 Msa0124070:intron 45.0%
GCCTGACCAGTTAACATTGA+AGG - chr1_3:51569622-51569641 None:intergenic 45.0%
! ACTGCAGTTTTGCCAATGCA+AGG - chr1_3:51569756-51569775 None:intergenic 45.0%
!! TTCTGCAATTTGCTGCAGCT+TGG + chr1_3:51569836-51569855 Msa0124070:intron 45.0%
TTCTTACTGCGCTTTGCCTT+GGG + chr1_3:51569902-51569921 Msa0124070:CDS 45.0%
ATACAAACCACGAAGCTGCT+AGG - chr1_3:51569931-51569950 None:intergenic 45.0%
! CTCTCAGATTGGCTGATCTT+TGG - chr1_3:51569993-51570012 None:intergenic 45.0%
GTAGTGGTAGAGAGAGAGTG+AGG - chr1_3:51566941-51566960 None:intergenic 50.0%
CAAGACCAAGTTCACAACCC+AGG + chr1_3:51567300-51567319 Msa0124070:five_prime_UTR 50.0%
!! GTTGATGTTGGTGGTGGTAC+TGG + chr1_3:51567469-51567488 Msa0124070:CDS 50.0%
GCTGATAGATATGTGTCCGC+TGG + chr1_3:51567652-51567671 Msa0124070:CDS 50.0%
! GTGGCATCAAGGAAGCATAC+AGG + chr1_3:51568283-51568302 Msa0124070:CDS 50.0%
! GTCCTGTCTACCCGACATTT+TGG + chr1_3:51568340-51568359 Msa0124070:CDS 50.0%
CGCGTTTCTTCGCAGATGTT+TGG + chr1_3:51568367-51568386 Msa0124070:intron 50.0%
ATCGAGTGGTTTACGAAGGC+AGG + chr1_3:51568417-51568436 Msa0124070:CDS 50.0%
TCGAGTGGTTTACGAAGGCA+GGG + chr1_3:51568418-51568437 Msa0124070:CDS 50.0%
TCGCCGTCATGGCTTGATTA+TGG + chr1_3:51568491-51568510 Msa0124070:CDS 50.0%
CGCCGTCATGGCTTGATTAT+GGG + chr1_3:51568492-51568511 Msa0124070:CDS 50.0%
! ACTGGTGTTAAGCCTGCATC+TGG + chr1_3:51568525-51568544 Msa0124070:CDS 50.0%
! CTGGTGTTAAGCCTGCATCT+GGG + chr1_3:51568526-51568545 Msa0124070:CDS 50.0%
! TGGTGTTAAGCCTGCATCTG+GGG + chr1_3:51568527-51568546 Msa0124070:CDS 50.0%
AAAGGAGAATCCCCAGATGC+AGG - chr1_3:51568540-51568559 None:intergenic 50.0%
ATCTGGGGATTCTCCTTTGC+AGG + chr1_3:51568542-51568561 Msa0124070:CDS 50.0%
ACACACACCAGGACACCATA+AGG - chr1_3:51568663-51568682 None:intergenic 50.0%
GGAAAACTAGTTCCTGGGCA+TGG + chr1_3:51569292-51569311 Msa0124070:intron 50.0%
TTTGCTGCAGCTTGGTCCAA+AGG + chr1_3:51569844-51569863 Msa0124070:intron 50.0%
CTTCTTACTGCGCTTTGCCT+TGG + chr1_3:51569901-51569920 Msa0124070:CDS 50.0%
TTGATGCCACGCTGTGGATC+TGG - chr1_3:51568273-51568292 None:intergenic 55.0%
AGATCCACAGCGTGGCATCA+AGG + chr1_3:51568272-51568291 Msa0124070:CDS 55.0%
TATCGTGGAGTTCGCCGTCA+TGG + chr1_3:51568480-51568499 Msa0124070:CDS 55.0%
TACTGGCCAGATCCACAGCG+TGG + chr1_3:51568264-51568283 Msa0124070:CDS 60.0%
GCTTCCTTGATGCCACGCTG+TGG - chr1_3:51568279-51568298 None:intergenic 60.0%
CGAAGCTGCTAGGACGCCCA+AGG - chr1_3:51569921-51569940 None:intergenic 65.0%
TGGGCGTCCTAGCAGCTTCG+TGG + chr1_3:51569921-51569940 Msa0124070:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51566672 51570238 51566672 ID=Msa0124070;Name=Msa0124070
chr1_3 mRNA 51566672 51570238 51566672 ID=Msa0124070-mRNA-1;Parent=Msa0124070;Name=Msa0124070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=618|0.75|0.6|1|0.5|0.4|5|229|237
chr1_3 exon 51566672 51566963 51566672 ID=Msa0124070-mRNA-1:exon:15740;Parent=Msa0124070-mRNA-1
chr1_3 exon 51567089 51567677 51567089 ID=Msa0124070-mRNA-1:exon:15741;Parent=Msa0124070-mRNA-1
chr1_3 exon 51568257 51568369 51568257 ID=Msa0124070-mRNA-1:exon:15742;Parent=Msa0124070-mRNA-1
chr1_3 exon 51568382 51568563 51568382 ID=Msa0124070-mRNA-1:exon:15743;Parent=Msa0124070-mRNA-1
chr1_3 exon 51569854 51570238 51569854 ID=Msa0124070-mRNA-1:exon:15744;Parent=Msa0124070-mRNA-1
chr1_3 five_prime_UTR 51566672 51566963 51566672 ID=Msa0124070-mRNA-1:five_prime_utr;Parent=Msa0124070-mRNA-1
chr1_3 five_prime_UTR 51567089 51567414 51567089 ID=Msa0124070-mRNA-1:five_prime_utr;Parent=Msa0124070-mRNA-1
chr1_3 CDS 51567415 51567677 51567415 ID=Msa0124070-mRNA-1:cds;Parent=Msa0124070-mRNA-1
chr1_3 CDS 51568257 51568369 51568257 ID=Msa0124070-mRNA-1:cds;Parent=Msa0124070-mRNA-1
chr1_3 CDS 51568382 51568563 51568382 ID=Msa0124070-mRNA-1:cds;Parent=Msa0124070-mRNA-1
chr1_3 CDS 51569854 51570009 51569854 ID=Msa0124070-mRNA-1:cds;Parent=Msa0124070-mRNA-1
chr1_3 three_prime_UTR 51570010 51570238 51570010 ID=Msa0124070-mRNA-1:three_prime_utr;Parent=Msa0124070-mRNA-1
Gene Sequence

>Msa0124070

ATGAGAGATGAAGCTCTTGAACCAGCTGAACTTACTGATAGGAATATGCTTGTTGTTGATGTTGGTGGTGGTACTGGTTTCACTACATTGGGTATTGTTAAGCATGTCGATGCTAAGAATGTAACTATTCTTGATCAGTCACCTCATCAGCTTGCTAAAGCAAAGCAAAAGGAACCACTTAAGGATTGTAAAATTGTTGAAGGGGATGCTGAAGATTTACCCTTTCGAACTGATTATGCTGATAGATATGTGTCCGCTGGAAGCATTGAATACTGGCCAGATCCACAGCGTGGCATCAAGGAAGCATACAGGGTTTTGAAATTTGGGGGCAAAGCATGTTTAATTGGTCCTGTCTACCCGACATTTTGGTTGTCGCATGTTTGGATGCTTTTCCCTAAAGAAGAAGAGTATATCGAGTGGTTTACGAAGGCAGGGTTTAAGGATGTCCAGCTAAAAAGGATTGGCCCAAAATGGTATCGTGGAGTTCGCCGTCATGGCTTGATTATGGGTTGTTCTGTGACTGGTGTTAAGCCTGCATCTGGGGATTCTCCTTTGCAGCTTGGTCCAAAGGAAGAAGATGTTGAAAAGCCTGTAAATCCCTTTGTCTTCTTACTGCGCTTTGCCTTGGGCGTCCTAGCAGCTTCGTGGTTTGTATTGATTCCTATTTACATGTGGCTCAAAGATCAAATTGTTCCCAAAGATCAGCCAATCTGA

Protein sequence

>Msa0124070

MRDEALEPAELTDRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIVEGDAEDLPFRTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKFGGKACLIGPVYPTFWLSHVWMLFPKEEEYIEWFTKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDVEKPVNPFVFLLRFALGVLAASWFVLIPIYMWLKDQIVPKDQPI*