AlfalfaGEDB | Msa1011470

M. sativa cultivar zhongmu-4 / Msa1011470

KEGG: -
GO: -
PFAM: PF10650.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011470	XP_003621837.2	94.549	1596	82	2	1	1593	78	1671	0.0	3085

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011470	G7KWR6	94.549	1596	82	2	1	1593	78	1671	0.0	3085

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0025060	Msa1011470	0.831226	1.881775e-55	-8.615850e-47
Msa0025090	Msa1011470	0.839755	1.310818e-57	-8.615850e-47
Msa0072590	Msa1011470	0.817900	2.594691e-52	-8.615850e-47
Msa0139280	Msa1011470	0.801740	7.807168e-49	-8.615850e-47
Msa0146490	Msa1011470	0.807653	4.550126e-50	-8.615850e-47
Msa0198140	Msa1011470	0.809257	2.069132e-50	-8.615850e-47
Msa0198220	Msa1011470	0.807029	6.171364e-50	-8.615850e-47
Msa0278340	Msa1011470	0.809772	1.604004e-50	-8.615850e-47
Msa0451370	Msa1011470	0.801920	7.169755e-49	-8.615850e-47
Msa0483160	Msa1011470	0.826167	3.146687e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011470	MtrunA17_Chr7g0223021	94.549	1596	82	2	1	1593	78	1671	0.0	3085

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011470	AT2G39580.2	35.349	1604	877	44	39	1591	97	1591	0.0	753
Msa1011470	AT2G39580.1	34.556	1609	868	44	39	1591	97	1576	0.0	722

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Find 337 sgRNAs with CRISPR-Local

Find 644 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAGGTACCGATTCC+AGG	0.372874	7_1:-15794642	Msa1011470:CDS
AAACAAATGGATATGATGTT+TGG	0.371510	7_1:-15786640	Msa1011470:CDS
AAACATATTCCAGTTTCCTC+AGG	0.515779	7_1:-15794217	Msa1011470:CDS
AAACTCTCGTGTCTTCACAA+TGG	0.633420	7_1:-15787109	Msa1011470:CDS
AAAGAGATTCCATTATGTAG+AGG	0.608872	7_1:-15794013	Msa1011470:CDS
AAAGATGTAATTGCTGGGAA+TGG	0.454843	7_1:+15785589	None:intergenic
AAAGCTGCACAAGGGTCAAC+CGG	0.468116	7_1:+15793192	None:intergenic
AAATCCGCTCATGTTAATGA+TGG	0.532875	7_1:-15790658	Msa1011470:CDS
AAATGAAAGGAACATTCATA+TGG	0.471454	7_1:-15790890	Msa1011470:CDS
AAATTCTGAACAATAGCACC+AGG	0.645313	7_1:+15787237	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAACTATACAACCAATTTCA+CGG	-	chr7_1:15785465-15785484	Msa1011470:three_prime_UTR	30.0%
AGAAATAGAACTAGGATTCT+TGG	+	chr7_1:15785768-15785787	None:intergenic	30.0%
ACAATAAACTTCAGGATTTG+CGG	-	chr7_1:15785903-15785922	Msa1011470:CDS	30.0%
TTCCTAGTTGTATCATTCTT+CGG	+	chr7_1:15786013-15786032	None:intergenic	30.0%
AAAGAGATTCCATTATGTAG+AGG	-	chr7_1:15786235-15786254	Msa1011470:CDS	30.0%
AAGAGATTCCATTATGTAGA+GGG	-	chr7_1:15786236-15786255	Msa1011470:CDS	30.0%
GGAAATATGTTGTACTATTC+TGG	-	chr7_1:15786410-15786429	Msa1011470:CDS	30.0%
TACATGAAAATTGCATGTAC+TGG	-	chr7_1:15787208-15787227	Msa1011470:CDS	30.0%
ACATGAAAATTGCATGTACT+GGG	-	chr7_1:15787209-15787228	Msa1011470:CDS	30.0%
GAATTGCACGTTAAGAAAAT+TGG	+	chr7_1:15787389-15787408	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	15785437	15794833	15785437	ID=Msa1011470;Name=Msa1011470
chr7_1	mRNA	15785437	15794833	15785437	ID=Msa1011470-mRNA-1;Parent=Msa1011470;Name=Msa1011470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|1\|1\|1\|0.87\|0.77\|9\|381\|1596
chr7_1	exon	15785437	15785553	15785437	ID=Msa1011470-mRNA-1:exon:4088;Parent=Msa1011470-mRNA-1
chr7_1	exon	15785577	15787628	15785577	ID=Msa1011470-mRNA-1:exon:4087;Parent=Msa1011470-mRNA-1
chr7_1	exon	15788219	15788344	15788219	ID=Msa1011470-mRNA-1:exon:4086;Parent=Msa1011470-mRNA-1
chr7_1	exon	15788433	15788531	15788433	ID=Msa1011470-mRNA-1:exon:4085;Parent=Msa1011470-mRNA-1
chr7_1	exon	15789671	15789993	15789671	ID=Msa1011470-mRNA-1:exon:4084;Parent=Msa1011470-mRNA-1
chr7_1	exon	15790398	15790913	15790398	ID=Msa1011470-mRNA-1:exon:4083;Parent=Msa1011470-mRNA-1
chr7_1	exon	15791616	15792537	15791616	ID=Msa1011470-mRNA-1:exon:4082;Parent=Msa1011470-mRNA-1
chr7_1	exon	15793149	15793258	15793149	ID=Msa1011470-mRNA-1:exon:4081;Parent=Msa1011470-mRNA-1
chr7_1	exon	15793927	15794833	15793927	ID=Msa1011470-mRNA-1:exon:4080;Parent=Msa1011470-mRNA-1
chr7_1	CDS	15793927	15794833	15793927	ID=Msa1011470-mRNA-1:cds;Parent=Msa1011470-mRNA-1
chr7_1	CDS	15793149	15793258	15793149	ID=Msa1011470-mRNA-1:cds;Parent=Msa1011470-mRNA-1
chr7_1	CDS	15791616	15792537	15791616	ID=Msa1011470-mRNA-1:cds;Parent=Msa1011470-mRNA-1
chr7_1	CDS	15790398	15790913	15790398	ID=Msa1011470-mRNA-1:cds;Parent=Msa1011470-mRNA-1
chr7_1	CDS	15789671	15789993	15789671	ID=Msa1011470-mRNA-1:cds;Parent=Msa1011470-mRNA-1
chr7_1	CDS	15788433	15788531	15788433	ID=Msa1011470-mRNA-1:cds;Parent=Msa1011470-mRNA-1
chr7_1	CDS	15788219	15788344	15788219	ID=Msa1011470-mRNA-1:cds;Parent=Msa1011470-mRNA-1
chr7_1	CDS	15785841	15787628	15785841	ID=Msa1011470-mRNA-1:cds;Parent=Msa1011470-mRNA-1
chr7_1	three_prime_UTR	15785577	15785840	15785577	ID=Msa1011470-mRNA-1:three_prime_utr;Parent=Msa1011470-mRNA-1
chr7_1	three_prime_UTR	15785437	15785553	15785437	ID=Msa1011470-mRNA-1:three_prime_utr;Parent=Msa1011470-mRNA-1

Gene Sequence

>Msa1011470

GGAGGCTCCAATAATATACAGACGCGAACAACTATACAACCAATTTCACGGAAGATCATCATAAAAAAGAACCAATTACCCCCTAAATCTTCTCCATGGACTGGTCATGCAAGTGATGATAATAATCTTGTGATAAGCTTTTCTGATGATGACAGTGGTAGTGATATTGAAAATAAAGGTACCGATTCCAGGTTGGAAAGAAATAACAAGCGTCCTAGCTCTTCCTTGGAAAATTCAAACAAGTTACAGTTGCAACAAAATGCTAGAAGTTTGCACAACGAAACACCCATAAAATTTCCTTCGAAGCGCACATTTATCTCATCAGTAACCAAGAATCCTAGTTCTATTTCTAAGGGTGCTGGATCCTGGTCATTGGGACAAGGTCCGCGAGCTAGAAATTTCAAGTCAACGAACAAAACTTTAGCTAGCCAAGAGCGTGGACGTGACCAAGGAGCAGTATCAAACAACAATAAACTTCAGGATTTGCGGCATCAGATTGCACTTCGGGAAAGTGAACTTAAGTTGAAGGCAGCCCAGCAAATGAAGGAGTCTGCTTTAGTTTTGGATAGGGATCCGAAGAATGATACAACTAGGAAACATATTCCAGTTTCCTCAGGAGCTGCACAATTGGAGCCGAAAGGACCTGATAGGAAGCGCATGAAAATCAACACATCTCATGATACCCCCCAGGCTGTTGTTGGTCAGCAAGTTCCTGTTGTAAAATCTATATTACCATCTAAAGATTCTGTGTGTGGAAACATTTATCCCCAGGAGAGAAACAAGGTTGATCATAACCCGAAAGAGATTCCATTATGTAGAGGGGAGTCAATAATCATCAAATCACAAAGGGAAACTGGCAACCATCTCAGCAACTCAGTACAAAATATGCCTTGTGTATCAAGAGAAGGTGATGTCAATTATGATTGCAATCAGACTGACAAAAGTAGTAGGCCGGTTGACCCTTGTGCAGCTTTCATCCAAAGTTCAATGCCAGCTAGCAGCGTGCCGACTAATTTAGAAGCATTAAGCAATGCTGTTCTTATGACTGATAATGGTAATGCAAATGTCTCCGAGCATAGCAACATTGAGTTACAGTCGTTTATTGATATGGAAGAATTGATAGATAAACTGGAGGAAGCTCAAGAACACAGGCATAATTGTGAAATTGAAGAAAGAAATGCATACAGAGCTTATGTTAAAGCTCAGAGGTCTTTGCTTGAGGCTAATGCTCGATGCAACGATCTTTATCACCAAAGGGAGTTGTATTCAGCTAAGCTACGATCCGGCTTCTCTTTGTCTTTAAGACAGCACCAACAACTTGGAATAGGTCTAGATTACTTACCTAAACTTGGATATGAAATACCCACATCAAGCTGTCTGAGGCAGGCTGAATATAATATTAATAATCCTAGTTTTGATTCTAATGATCAAGGCATCAATAATAGGCATTCTGATACTTCCTGTCACCACAAAAATGGAGCAAATTTAGGATCTGAGCCTTGCATTGAACCAGATGCTAGTACATCTGAGCCATTGTCTCAAAGGGGTAATCATGCAGCGGATGGAGTGTATTCTCCTATGGATGAGGTCGACACATCAGATAATGAAAATGAAGAGATTTCTCCAGCTGGACACACTTCTAATAATCTTGATGCTGAATATTGTAGAAAACAAGACTCCAAGGCGAAACAAACAGACTTAGACACTGCATCAAATGCAGATTATTCCACCGGAAGTCCTCAGGATTCTTTGCTTCTTGAAGCAACATTAAGGTCTGAATTATTTGCACGGTTAGGGAAAAGAGCTAAGAAGAGTAATATTCCATGCAACAACATTGAAACTACTGAACCAGGTTCTGAAAATGAGGTTGGAAGTGAGAAAAACCGAGTGCATCATGGCACAGTCCAATTGATTAATGCAGAAAACAGTGATCTTATAGGAAATGAAAGGAACATTCATATGGACTCCAATGAGATTCAAAGTCAGCAAAACATTGGTGCAAATACTGTGAATACCAACTGCAGTGCTGGTTTAGGCGATCAAGGAGATATGCCTTTTCAAGTTTATCACTCAACTAATCCAGTGAACATTCCACCTTTGATTTTTAGGAGTGCATTTAGTGAGCTGAGAGAAATGTCATCATTTAGTTCAAATCAATTACCAAATCAAAATAAATCCGCTCATGTTAATGATGGTCAAAGTCAAAATTCTACTTGCCTCAGTTATGATGAAGCAAAGAGGAACATGTTGGCAATCTCAATGGCAGTCACCATTGGGAACTCACTCTCGGAAGAAGGCTTTTATGGCTGCAGTCCTGAAGTTGATCCGTTTTGGCCGCTTTGCATGTATGAGCTGCGAGGAAAATGCAACAATGATGAGTGTCCTTGGCAGCATGCCAAGGACTATGGTGATGGAAACATTAATCAGCATCAGCACACTGATACTAATAATGGAGATTCTCAAGATAGATCGCCGTTGCAAGAACAAAACTGTAATGGTCTGATGAAAGTTACCAATTATCACAAAGCTACTGTTCTGCCAACATACCTTGTTAGTTTAGATGTTCTAAAAGCGGATCAATTTGCATATAAACCCATTGCTGCACATAGGATTGCTCAACACTGGCAGCAGCATTTCAGTATCACTTTGGCTACTTCAAATTTGCTACAAAATGGGTCACCCGAAGATGGTCCCTTATCACATGGTGGTGATGAACGCATTGAGGTCCGTGGGACATGGAGCAAGCAGTTATCTTTTCAGTGGAGAAATGGAGTTGGGAATCAAATTAAACAGGCTATGACTGATAGTGAGCAAGCTGTTGAGATGGCCCTTCTTATTCTCAACCAGGAAATCCATAAGTTGCAGGGGGTGCGAAAGGCTCTATCTGTACTGTCCAAAGCTCTGGAGACTTATCCAACATCTGTGGTAATCTGGATAGTTTACTCACTCATTTACTATGGAAGTTTTGGGCCAAATGAAAAAGAGGACATGTTCTTGTGTGCGGTTAAGCTCTATGAAGGATCTTATGTACTGTGGCTCATGTACATCAATAGTCGGAGAAAGCTTGATGATCGGATAGCTGCCTATGATTCTGCCATCTCAGCTCTCTGTCGGCATGCATCTGCTGCTCCTGAAGACAGAATGTACGAAAGTGCATGCATTTTAGATCTGTTTCTGCAGATGATGGATTGTTTATGCATGTCGAGGAATGTTGAGAGTGCCATTCAGCGAAGTTATGGAGTTTTTCCAGCTACAACTAAATCTGACGAGTCTAATCTTCTGTCACTCTCAGATTTACTCAATTGCTTAACAGTTTCTGACAAATGTGTGTTATGGGTTTGTTGTGTTTACTTAGTTATTTACAGGAAGCTGCCTGGTGCTATTGTTCAGAATTTTGAATGCACGAAAGATCTCCTTGACATTGAATGGCCCATTGTAAGTTTATCAGAGGATGAAAAGGAGAGGGCTGTTAAACTTATGGAAACAGCAGCTGAATATATAAACTCTCGTGTCTTCACAATGGAAAGTGAAGATGATCTCAAGTGTGCTCAGCATTTTGCTCTCAATCATCTCAGGTGCATGGTTGCTCTTGATGGATTAGAATGCGCAAGGAGTTTGTTTGATAGATATGTTAAGTTGTACCCTTTCTGCATAGAATTGGTCCTGGTCTCAGCTCAAATACAGAAACAAGATCTTGGTGCTGGTAATTTCATGGTATTTGAGGACACAATTAATAGATGGCCAAAAATAGTTCCAGGAATCCAGTGCATTTGGAATCAGTACATTGCAAATGCTATCCATAATCAAAGGATTGACCTTGCAAAAGAAATTACAGTCCGATGGTTCCATTCTGCATGGCAAGTGCAGGATCCCCCGTATGGCGGGACGGATGCCGCTGATGATGGTAATTCTTGTGGCTTAGTGGGATCAGGGTCAAAATTTGTTTCTGACACATCAAATTCTGGTCACAAACAAATGGATATGATGTTTGGATATCTTAATCTGTCCATTTATCATTTTTTCCAGAAGGATAAAACAGAAGCAAGCATAGCTGTTAATAAGGCTAGGAATACTGTCAGTTTTGTGGGTTTAGATCATTATATAAGAAAATATGCAATGTTTATGGTTTGTGATGCATCTAGCTTAAATGAGGGTGATCCTGAGAGTGTTGTCAAGAGGATGTTGGAAGTATATATGGATGGTTCCTCCCAGGCGTTGCTAGTCCCTAGAGTGCTAACAAGAAAATTTCTTGACAGTATCAAGAAGCCAAGAGTACAGAATCTCATTGACAACATATTAAGGCCAGTTTCATTTGATTGTTCTGTACTAAATTTGATGCTTCAATCATGGTTTGGTTCATCTCTTTTACCTCATACTGTGAGTGACCCAAAACTTCTGGTGGATTTTGTTGAACGCATTATGGAGGTAGTTCCTCACAACTTTCAATTAGCTATTGCTGTTTGCAAACTTTTGAGCAAGGATTACAGTTCTTCTGATCTAAACTCAACCAGTCTGTGGTTTTGGTCTTGTTCAACCCTGGTTAATGCAATTACAGGTGCTATCCCGATACCACCAGAATATGTCTGGGTGGAAGCTGCAGTGTTTCTACAAAGTGCTATGGGCATTGAGGCAATATCCCAGAGGTTTTATAAAAAGGCTGTGTCAGTGTATCCATTTTCTATAATGTTGTGGAAATGTTACTATAAGTTGCTTTTGTCCAATGGAGATGCAAACAGTATTATTGAAGAAGCAAAAGAAAGGGGTATTAACCTTGATTTACTAATTGATTGA

Protein sequence

>Msa1011470

GGSNNIQTRTTIQPISRKIIIKKNQLPPKSSPWTGHASDDNNLVISFSDDDSGSDIENKGTDSRLERNNKRPSSSLENSNKLQLQQNARSLHNETPIKFPSKRTFISSVTKNPSSISKGAGSWSLGQGPRARNFKSTNKTLASQERGRDQGAVSNNNKLQDLRHQIALRESELKLKAAQQMKESALVLDRDPKNDTTRKHIPVSSGAAQLEPKGPDRKRMKINTSHDTPQAVVGQQVPVVKSILPSKDSVCGNIYPQERNKVDHNPKEIPLCRGESIIIKSQRETGNHLSNSVQNMPCVSREGDVNYDCNQTDKSSRPVDPCAAFIQSSMPASSVPTNLEALSNAVLMTDNGNANVSEHSNIELQSFIDMEELIDKLEEAQEHRHNCEIEERNAYRAYVKAQRSLLEANARCNDLYHQRELYSAKLRSGFSLSLRQHQQLGIGLDYLPKLGYEIPTSSCLRQAEYNINNPSFDSNDQGINNRHSDTSCHHKNGANLGSEPCIEPDASTSEPLSQRGNHAADGVYSPMDEVDTSDNENEEISPAGHTSNNLDAEYCRKQDSKAKQTDLDTASNADYSTGSPQDSLLLEATLRSELFARLGKRAKKSNIPCNNIETTEPGSENEVGSEKNRVHHGTVQLINAENSDLIGNERNIHMDSNEIQSQQNIGANTVNTNCSAGLGDQGDMPFQVYHSTNPVNIPPLIFRSAFSELREMSSFSSNQLPNQNKSAHVNDGQSQNSTCLSYDEAKRNMLAISMAVTIGNSLSEEGFYGCSPEVDPFWPLCMYELRGKCNNDECPWQHAKDYGDGNINQHQHTDTNNGDSQDRSPLQEQNCNGLMKVTNYHKATVLPTYLVSLDVLKADQFAYKPIAAHRIAQHWQQHFSITLATSNLLQNGSPEDGPLSHGGDERIEVRGTWSKQLSFQWRNGVGNQIKQAMTDSEQAVEMALLILNQEIHKLQGVRKALSVLSKALETYPTSVVIWIVYSLIYYGSFGPNEKEDMFLCAVKLYEGSYVLWLMYINSRRKLDDRIAAYDSAISALCRHASAAPEDRMYESACILDLFLQMMDCLCMSRNVESAIQRSYGVFPATTKSDESNLLSLSDLLNCLTVSDKCVLWVCCVYLVIYRKLPGAIVQNFECTKDLLDIEWPIVSLSEDEKERAVKLMETAAEYINSRVFTMESEDDLKCAQHFALNHLRCMVALDGLECARSLFDRYVKLYPFCIELVLVSAQIQKQDLGAGNFMVFEDTINRWPKIVPGIQCIWNQYIANAIHNQRIDLAKEITVRWFHSAWQVQDPPYGGTDAADDGNSCGLVGSGSKFVSDTSNSGHKQMDMMFGYLNLSIYHFFQKDKTEASIAVNKARNTVSFVGLDHYIRKYAMFMVCDASSLNEGDPESVVKRMLEVYMDGSSQALLVPRVLTRKFLDSIKKPRVQNLIDNILRPVSFDCSVLNLMLQSWFGSSLLPHTVSDPKLLVDFVERIMEVVPHNFQLAIAVCKLLSKDYSSSDLNSTSLWFWSCSTLVNAITGAIPIPPEYVWVEAAVFLQSAMGIEAISQRFYKKAVSVYPFSIMLWKCYYKLLLSNGDANSIIEEAKERGINLDLLID*