AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0604890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604890 MtrunA17_Chr4g0034251 100.000 166 0 0 1 166 1 166 2.30e-116 326
Msa0604890 MtrunA17_Chr8g0373951 59.868 152 61 0 15 166 1 152 4.06e-57 176
Msa0604890 MtrunA17_Chr5g0403141 63.816 152 55 0 15 166 2 153 1.10e-55 172
Msa0604890 MtrunA17_Chr1g0186551 41.722 151 88 0 15 165 1 151 1.01e-31 111
Msa0604890 MtrunA17_Chr1g0186591 44.000 150 82 2 15 163 1 149 2.67e-31 110
Msa0604890 MtrunA17_Chr4g0009521 41.558 154 88 1 15 166 2 155 5.46e-30 107
Msa0604890 MtrunA17_Chr4g0028981 36.424 151 95 1 15 165 35 184 3.66e-24 92.8
Msa0604890 MtrunA17_Chr1g0167831 37.594 133 83 0 15 147 1 133 2.20e-15 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604890 AT3G50810.3 52.632 152 72 0 15 166 1 152 4.34e-50 158
Msa0604890 AT3G50810.2 52.632 152 72 0 15 166 1 152 4.34e-50 158
Msa0604890 AT3G50810.1 52.632 152 72 0 15 166 1 152 4.34e-50 158
Msa0604890 AT4G37235.1 57.792 154 58 2 15 166 1 149 2.07e-49 156
Msa0604890 AT1G49405.1 57.576 132 55 1 15 146 1 131 5.73e-40 132
Msa0604890 AT3G23200.1 40.397 151 90 0 15 165 1 151 1.25e-31 111
Msa0604890 AT3G53850.1 37.419 155 93 2 15 166 1 154 2.38e-26 98.2
Msa0604890 AT3G53850.2 37.419 155 93 2 15 166 1 154 2.38e-26 98.2
Msa0604890 AT5G02060.1 42.105 152 84 2 15 163 1 151 4.59e-26 97.4
Msa0604890 AT2G28370.1 39.623 159 94 2 7 165 22 178 1.32e-24 94.4
Msa0604890 AT2G37200.1 36.242 149 93 2 15 163 31 177 1.38e-19 81.3
Msa0604890 AT2G37200.2 36.242 149 93 2 15 163 60 206 2.93e-19 81.3
Msa0604890 AT3G23200.2 40.187 107 64 0 59 165 18 124 9.15e-18 75.1
Msa0604890 AT3G53850.3 34.783 138 81 3 37 166 5 141 2.90e-16 71.6

Find 114 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTCACAATATGTATT+TGG 0.117469 4_2:+50671533 Msa0604890:three_prime_UTR
TTCCCTTCTCTTTATGTCTT+TGG 0.136583 4_2:+50669710 Msa0604890:CDS
TCTACAGCTACACAGCTTTC+TGG 0.190585 4_2:+50669742 Msa0604890:CDS
TTATTCATGTCCTAGCTATT+TGG 0.210283 4_2:+50670915 Msa0604890:intron
TCCCTTCTCTTTATGTCTTT+GGG 0.218721 4_2:+50669711 Msa0604890:CDS
TCTTTAATTATGTATGATAA+TGG 0.224272 4_2:-50669372 None:intergenic
CTTTCAGCTGAAGCTTCTTT+TGG 0.249743 4_2:-50669556 None:intergenic
TTCATGTAACTTATTCTATA+AGG 0.251103 4_2:-50669615 None:intergenic
GGAAATTCTGTTTGAATCAT+AGG 0.253973 4_2:+50669482 Msa0604890:five_prime_UTR
TACCTGCAGCAAAGCTTTAT+AGG 0.287744 4_2:-50671312 Msa0604900:CDS
TGTGTCATGGTTTCTGTCCT+TGG 0.292773 4_2:+50671359 Msa0604890:CDS
GAAATGCTATTAAATATTAT+AGG 0.297458 4_2:+50669517 Msa0604890:five_prime_UTR
CAACTATCTCATGGAACATT+TGG 0.310372 4_2:-50672227 Msa0604900:intron
CATCCTTGAGGCCGAGGCCT+GGG 0.320849 4_2:-50671931 Msa0604900:intron
CTTTAATTATGTATGATAAT+GGG 0.324399 4_2:-50669371 None:intergenic
AGATATAACTGTCAAGAATA+TGG 0.335129 4_2:-50671808 Msa0604900:intron
TTGACATGGGAATGAGTAAA+TGG 0.368062 4_2:-50672613 None:intergenic
AGGCAGCTGCTGCTAGTGTC+AGG 0.369998 4_2:-50671239 Msa0604900:CDS
TGATTATTGTTGTTGGAGAT+TGG 0.373331 4_2:+50671040 Msa0604890:CDS
GATTATTGTTGTTGGAGATT+GGG 0.385112 4_2:+50671041 Msa0604890:CDS
TTCACGTTAGCATTGGTAGA+TGG 0.388590 4_2:+50670970 Msa0604890:CDS
TTTGGTGACAATCATGGGTT+TGG 0.390209 4_2:+50670933 Msa0604890:CDS
TATAGTTATTGAACAATTGA+AGG 0.395906 4_2:+50671759 Msa0604890:three_prime_UTR
AAAGCTCACAATATGTATTT+GGG 0.401334 4_2:+50671534 Msa0604890:three_prime_UTR
ATAATAGAGCGAATACAGTT+TGG 0.411171 4_2:+50671640 Msa0604890:three_prime_UTR
TAGCTATTTGGTGACAATCA+TGG 0.411496 4_2:+50670927 Msa0604890:intron
ACAATAATCAACAATATTCC+TGG 0.414279 4_2:-50671027 None:intergenic
CTGAAAGAAATAAGCTTGTA+TGG 0.414661 4_2:+50669572 Msa0604890:exon
GCATTGCCTGAGAACTCTCT+TGG 0.415222 4_2:-50671892 Msa0604900:intron
ACAAAGAGGGTAGCAGATAA+AGG 0.415465 4_2:-50671398 Msa0604900:intron
TTCTCTAGGCAATCAACTAA+TGG 0.418900 4_2:-50671727 Msa0604900:intron
AATATTCCTGGTTGACGAAT+GGG 0.419042 4_2:-50671015 None:intergenic
GTAGACTGTAGCTGCACAAT+TGG 0.422673 4_2:-50671975 Msa0604900:intron
ACCTGCAGCAAAGCTTTATA+GGG 0.423414 4_2:-50671311 Msa0604900:CDS
AGTTCTGGCTGAATTATCAT+TGG 0.427696 4_2:-50672268 Msa0604900:intron
ATGAAGATCAACCTATGTTA+AGG 0.428204 4_2:+50669461 Msa0604890:five_prime_UTR
AAGATCCTTGCGAATTTAGC+AGG 0.439168 4_2:-50671284 Msa0604900:CDS
TCATCCTTGAGGCCGAGGCC+TGG 0.439340 4_2:-50671932 Msa0604900:intron
TAAAGCTTTGCTGCAGGTAC+AGG 0.441403 4_2:+50671316 Msa0604890:CDS
GCACTTGTGCCCACAGAGCC+AGG 0.442656 4_2:-50669645 None:intergenic
TCAATATGTAATCTTCGAGT+TGG 0.449317 4_2:-50671866 Msa0604900:intron
AAGCAGATGAAAACAAGGTT+TGG 0.456691 4_2:-50669689 None:intergenic
GGTAGCGCTAGAGCCGGTTC+AGG 0.463926 4_2:-50672101 Msa0604900:CDS
TGTTAGCAATCCCCAGGCCT+CGG 0.465169 4_2:+50671920 Msa0604890:three_prime_UTR
GTACAGGATATCTGCAGTTA+TGG 0.466206 4_2:+50671332 Msa0604890:CDS
AGCTATTTGGTGACAATCAT+GGG 0.471135 4_2:+50670928 Msa0604890:intron
TAACATATTGAACATGAGTC+TGG 0.478993 4_2:-50672455 None:intergenic
ATCCTTGAGGCCGAGGCCTG+GGG 0.488704 4_2:-50671930 Msa0604900:intron
GCCCTATAAAGCTTTGCTGC+AGG 0.489609 4_2:+50671310 Msa0604890:CDS
ATATTGTTGATTATTGTTGT+TGG 0.494499 4_2:+50671033 Msa0604890:CDS
AAGATGATGAATTAAGTTGA+GGG 0.497335 4_2:-50672204 Msa0604900:intron
ATCCCCAGGCCTCGGCCTCA+AGG 0.498174 4_2:+50671928 Msa0604890:three_prime_UTR
GAAGATGATGAATTAAGTTG+AGG 0.499292 4_2:-50672205 Msa0604900:intron
GCAGCAGTTTGCTCCTGAAC+CGG 0.499441 4_2:+50672088 Msa0604890:three_prime_UTR
AAATGTCATCCTTGAGGCCG+AGG 0.503374 4_2:-50671937 Msa0604900:intron
AAACAGAATTTCCTTAACAT+AGG 0.505920 4_2:-50669472 None:intergenic
AGGAACTCTCTTATATTTAG+CGG 0.509237 4_2:+50669303 None:intergenic
GATTGTTTGCAACTATCTCA+TGG 0.511960 4_2:-50672236 Msa0604900:intron
TCATGGGTTTGGTTATACCT+TGG 0.513400 4_2:+50670944 Msa0604890:CDS
CAATATTCCTGGTTGACGAA+TGG 0.518569 4_2:-50671016 None:intergenic
TTCTATTGATGCATTTGACA+TGG 0.521223 4_2:-50672627 None:intergenic
CATTTGACATAGCCATACCT+TGG 0.521239 4_2:+50672043 Msa0604890:three_prime_UTR
CTTCGAGTTGGACTGTAAGC+AGG 0.521612 4_2:-50671854 Msa0604900:intron
AGTAAATGGCAGCAGCTTTG+AGG 0.522752 4_2:-50672599 None:intergenic
TGAGAACCATTGTGCAGTCT+TGG 0.527155 4_2:-50672156 Msa0604900:intron
TCTTATATTTAGCGGCGCTA+AGG 0.529664 4_2:+50669311 Msa0604890:five_prime_UTR
GCCAGCTTCATCCTCAGATT+AGG 0.530843 4_2:+50669666 Msa0604890:CDS
CCGTTGGAACCTCCAAGGTA+TGG 0.538991 4_2:-50672055 Msa0604900:intron
CAACTATCTCATGCTGGCAG+TGG 0.539635 4_2:-50672316 Msa0604900:intron
ATTAAATGAGAATCACAAAG+AGG 0.541148 4_2:-50671412 Msa0604900:intron
TGAAAACCAAGAGAGTTCTC+AGG 0.545120 4_2:+50671886 Msa0604890:three_prime_UTR
AAATGTCCCATTCGTCAACC+AGG 0.546817 4_2:+50671009 Msa0604890:CDS
TTGACATAGCCATACCTTGG+AGG 0.547391 4_2:+50672046 Msa0604890:three_prime_UTR
ACATAGGTTACTTTGTGTAT+CGG 0.550561 4_2:-50669342 None:intergenic
CGTCTTAGATGAGACTATGC+AGG 0.552448 4_2:-50672005 Msa0604900:intron
GCCTAATCTGAGGATGAAGC+TGG 0.558630 4_2:-50669667 None:intergenic
TACTGTGGTAGCGCTAGAGC+CGG 0.563549 4_2:-50672107 Msa0604900:CDS
GGAAAGAAATGATGCAAACT+CGG 0.563848 4_2:-50672578 None:intergenic
TTGGAGTTTCACGTTAGCAT+TGG 0.565060 4_2:+50670963 Msa0604890:CDS
CAAATTTGTTAGCAATCCCC+AGG 0.571380 4_2:+50671914 Msa0604890:three_prime_UTR
CCATACCTTGGAGGTTCCAA+CGG 0.572663 4_2:+50672055 Msa0604890:three_prime_UTR
TGCTGCTGTCATGATTCCGT+TGG 0.573229 4_2:-50672071 Msa0604900:CDS
CTCCCAAAGACATAAAGAGA+AGG 0.573953 4_2:-50669713 None:intergenic
TATCTCATGCTGGCAGTGGA+CGG 0.575835 4_2:-50672312 Msa0604900:intron
CAATGGTTCTCACTCGCTGT+AGG 0.577319 4_2:+50672167 Msa0604890:three_prime_UTR
TCTATTGATGCATTTGACAT+GGG 0.580329 4_2:-50672626 None:intergenic
ATCTACAACACTAGCTGTTG+AGG 0.585209 4_2:-50671259 Msa0604900:CDS
ATATTGAACATGAGTCTGGT+AGG 0.588387 4_2:-50672451 None:intergenic
TTACAACATTGCTGAAAATG+CGG 0.588416 4_2:-50672358 Msa0604900:intron
TCCCAAAGACATAAAGAGAA+GGG 0.588441 4_2:-50669712 None:intergenic
GGCAGCTGCTGCTAGTGTCA+GGG 0.590351 4_2:-50671238 Msa0604900:CDS
ACAAGGTTTGGCCTAATCTG+AGG 0.590525 4_2:-50669677 None:intergenic
TGATGAATTAAGTTGAGGGA+AGG 0.603091 4_2:-50672200 Msa0604900:intron
TCACTGCAACTATCTCATGC+TGG 0.603777 4_2:-50672322 Msa0604900:intron
AATGAAATACCTGGCTCTGT+GGG 0.604276 4_2:+50669636 Msa0604890:CDS
AAATTTCTGCACATTGAGTG+AGG 0.607970 4_2:+50671782 Msa0604890:three_prime_UTR
AATGCTAACGTGAAACTCCA+AGG 0.609152 4_2:-50670961 None:intergenic
TGATTCCGTTGGAACCTCCA+AGG 0.611477 4_2:-50672060 Msa0604900:intron
GATCTCCTGCTAAATTCGCA+AGG 0.614662 4_2:+50671279 Msa0604890:CDS
TTAAATGAGAATCACAAAGA+GGG 0.615300 4_2:-50671411 Msa0604900:intron
GAATGAAATACCTGGCTCTG+TGG 0.618928 4_2:+50669635 Msa0604890:CDS
AAGGGAAGCAGATGAAAACA+AGG 0.621514 4_2:-50669694 None:intergenic
AGTTACATGAATGAAATACC+TGG 0.624827 4_2:+50669627 Msa0604890:CDS
TAGGTTACTTTGTGTATCGG+TGG 0.628344 4_2:-50669339 None:intergenic
GTTATTCGAAATAGAGTCCG+AGG 0.628523 4_2:+50672474 Msa0604890:three_prime_UTR
TGATAATGGGAATGACACAT+AGG 0.631576 4_2:-50669358 None:intergenic
CGAGTTGGACTGTAAGCAGG+TGG 0.635678 4_2:-50671851 Msa0604900:intron
AAATATTACAAAATATACAA+TGG 0.635722 4_2:-50671460 Msa0604900:intron
ACAATTGGACTGTTGTCAAG+CGG 0.667940 4_2:-50671960 Msa0604900:intron
AAGCGGAAATGTCATCCTTG+AGG 0.675341 4_2:-50671943 Msa0604900:intron
TGGCTATGTCAAATGCAACA+CGG 0.698251 4_2:-50672035 Msa0604900:intron
AGTACACACTACAAAGTACA+CGG 0.704863 4_2:-50671591 Msa0604900:intron
TTCTGTGCAGACAACTACTG+TGG 0.708886 4_2:-50672122 Msa0604900:intron
TTGCAGCCAAGACTGCACAA+TGG 0.723373 4_2:+50672150 Msa0604890:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTACAAAATATACAA+TGG - chr4_2:50671463-50671482 Msa0604900:intron 10.0%
!! CTTTAATTATGTATGATAAT+GGG - chr4_2:50669374-50669393 None:intergenic 15.0%
!! TCTTTAATTATGTATGATAA+TGG - chr4_2:50669375-50669394 None:intergenic 15.0%
!! GAAATGCTATTAAATATTAT+AGG + chr4_2:50669517-50669536 Msa0604890:five_prime_UTR 15.0%
!!! ATTTTTTCTCAAATTATTAC+CGG + chr4_2:50669885-50669904 Msa0604890:intron 15.0%
!!! ATTCTTGCAAATTTTTTGTT+AGG - chr4_2:50669432-50669451 None:intergenic 20.0%
!! TTCATGTAACTTATTCTATA+AGG - chr4_2:50669618-50669637 None:intergenic 20.0%
!! ACATTAAATGAGAAATATCA+GGG - chr4_2:50670123-50670142 None:intergenic 20.0%
!! AACATTAAATGAGAAATATC+AGG - chr4_2:50670124-50670143 None:intergenic 20.0%
!! TTTACATCACATAACATAAA+AGG + chr4_2:50670811-50670830 Msa0604890:intron 20.0%
!!! ATATTGTTGATTATTGTTGT+TGG + chr4_2:50671033-50671052 Msa0604890:CDS 20.0%
!! TTAATATGATGAAGTTACAA+TGG + chr4_2:50671118-50671137 Msa0604890:intron 20.0%
!! TATAGTTATTGAACAATTGA+AGG + chr4_2:50671759-50671778 Msa0604890:three_prime_UTR 20.0%
! AAACAGAATTTCCTTAACAT+AGG - chr4_2:50669475-50669494 None:intergenic 25.0%
! TAACAAAGAGAAGAACAAAA+AGG - chr4_2:50669770-50669789 None:intergenic 25.0%
! ATAACTTAAATCTTGAGTAC+TGG + chr4_2:50670151-50670170 Msa0604890:intron 25.0%
! AGTGTTATACTATATCCAAA+AGG - chr4_2:50670220-50670239 None:intergenic 25.0%
!!! ATTTTTCCGTATTGACATAT+CGG + chr4_2:50670465-50670484 Msa0604890:intron 25.0%
! AATGAGATTCAAGCATAAAA+AGG - chr4_2:50670655-50670674 None:intergenic 25.0%
! ATCACATAACATAAAAGGAA+AGG + chr4_2:50670816-50670835 Msa0604890:intron 25.0%
! ACAATAATCAACAATATTCC+TGG - chr4_2:50671030-50671049 None:intergenic 25.0%
! TTAGTACATGTTTGAATTGA+CGG + chr4_2:50671095-50671114 Msa0604890:intron 25.0%
! AACTAGAGTTATCAACATAT+CGG - chr4_2:50671196-50671215 None:intergenic 25.0%
! TTAAATGAGAATCACAAAGA+GGG - chr4_2:50671414-50671433 Msa0604900:intron 25.0%
! ATTAAATGAGAATCACAAAG+AGG - chr4_2:50671415-50671434 Msa0604900:intron 25.0%
! AAAAGCTCACAATATGTATT+TGG + chr4_2:50671533-50671552 Msa0604890:three_prime_UTR 25.0%
! AAAGCTCACAATATGTATTT+GGG + chr4_2:50671534-50671553 Msa0604890:three_prime_UTR 25.0%
! ATACTTTCAAAAATACTGTG+AGG + chr4_2:50671664-50671683 Msa0604890:three_prime_UTR 25.0%
! AGATATAACTGTCAAGAATA+TGG - chr4_2:50671811-50671830 Msa0604900:intron 25.0%
!!! GACAGTTATATCTATTTTTG+TGG + chr4_2:50671818-50671837 Msa0604890:three_prime_UTR 25.0%
!!! ATCTATTTTTGTGGATATCT+TGG + chr4_2:50671827-50671846 Msa0604890:three_prime_UTR 25.0%
!!! AAGATGATGAATTAAGTTGA+GGG - chr4_2:50672207-50672226 Msa0604900:intron 25.0%
!!! TATACATCTGTTTTTATCCT+CGG - chr4_2:50672494-50672513 None:intergenic 25.0%
! ACATAGGTTACTTTGTGTAT+CGG - chr4_2:50669345-50669364 None:intergenic 30.0%
!!! TTTTTTGTTAGGTAGAAGCT+TGG - chr4_2:50669421-50669440 None:intergenic 30.0%
ATGAAGATCAACCTATGTTA+AGG + chr4_2:50669461-50669480 Msa0604890:five_prime_UTR 30.0%
GGAAATTCTGTTTGAATCAT+AGG + chr4_2:50669482-50669501 Msa0604890:five_prime_UTR 30.0%
CTGAAAGAAATAAGCTTGTA+TGG + chr4_2:50669572-50669591 Msa0604890:exon 30.0%
AGTTACATGAATGAAATACC+TGG + chr4_2:50669627-50669646 Msa0604890:CDS 30.0%
TATCGGTGCATGATAATTAT+CGG - chr4_2:50670096-50670115 None:intergenic 30.0%
TGGATATAGTATAACACTGA+TGG + chr4_2:50670222-50670241 Msa0604890:intron 30.0%
AAACAAAAGAAACCAGTCAT+AGG - chr4_2:50670340-50670359 None:intergenic 30.0%
!!! TATGACTGGTTTCTTTTGTT+TGG + chr4_2:50670339-50670358 Msa0604890:intron 30.0%
GTCAAGTCAATTATGAAACA+TGG - chr4_2:50670546-50670565 None:intergenic 30.0%
!!! GACTTGACATTTTGTTGTTT+TGG + chr4_2:50670558-50670577 Msa0604890:intron 30.0%
AAAAAGCTTAAAAGCTTTGC+AGG - chr4_2:50670625-50670644 None:intergenic 30.0%
ACATAACATAAAAGGAAAGG+AGG + chr4_2:50670819-50670838 Msa0604890:intron 30.0%
TTATTCATGTCCTAGCTATT+TGG + chr4_2:50670915-50670934 Msa0604890:intron 30.0%
! TGATTATTGTTGTTGGAGAT+TGG + chr4_2:50671040-50671059 Msa0604890:CDS 30.0%
! GATTATTGTTGTTGGAGATT+GGG + chr4_2:50671041-50671060 Msa0604890:CDS 30.0%
TTCTTATCCAAATGCATGTA+TGG - chr4_2:50671165-50671184 None:intergenic 30.0%
! AACTCTAGTTTATTTGCTAC+AGG + chr4_2:50671206-50671225 Msa0604890:intron 30.0%
CAGATAAAGGTTAAAAAGAG+AGG - chr4_2:50671388-50671407 Msa0604900:intron 30.0%
!!! TCGATCTAATGTTTTTTACG+GGG - chr4_2:50671440-50671459 Msa0604900:intron 30.0%
!!! GTCGATCTAATGTTTTTTAC+GGG - chr4_2:50671441-50671460 Msa0604900:intron 30.0%
!!! GGTCGATCTAATGTTTTTTA+CGG - chr4_2:50671442-50671461 Msa0604900:intron 30.0%
ATAATAGAGCGAATACAGTT+TGG + chr4_2:50671640-50671659 Msa0604890:three_prime_UTR 30.0%
!!! CTATAGAGTTGTTTTTCTCT+AGG - chr4_2:50671744-50671763 Msa0604900:intron 30.0%
TCAATATGTAATCTTCGAGT+TGG - chr4_2:50671869-50671888 Msa0604900:intron 30.0%
! GAAGATGATGAATTAAGTTG+AGG - chr4_2:50672208-50672227 Msa0604900:intron 30.0%
TTACAACATTGCTGAAAATG+CGG - chr4_2:50672361-50672380 Msa0604900:intron 30.0%
! CTTTTATCATATTCTGGTCT+TGG - chr4_2:50672431-50672450 Msa0604900:intron 30.0%
TAACATATTGAACATGAGTC+TGG - chr4_2:50672458-50672477 None:intergenic 30.0%
!! TTTTGTTTGCTAGCATCTTA+TGG - chr4_2:50672534-50672553 None:intergenic 30.0%
!! TGATAATGGGAATGACACAT+AGG - chr4_2:50669361-50669380 None:intergenic 35.0%
AAGCAGATGAAAACAAGGTT+TGG - chr4_2:50669692-50669711 None:intergenic 35.0%
TTCCCTTCTCTTTATGTCTT+TGG + chr4_2:50669710-50669729 Msa0604890:CDS 35.0%
TCCCTTCTCTTTATGTCTTT+GGG + chr4_2:50669711-50669730 Msa0604890:CDS 35.0%
TCCCAAAGACATAAAGAGAA+GGG - chr4_2:50669715-50669734 None:intergenic 35.0%
ACTCAGACTGAAATTGTGTT+TGG + chr4_2:50669822-50669841 Msa0604890:intron 35.0%
!!! TCATCCATTTTGAAGTATCG+GGG - chr4_2:50669951-50669970 None:intergenic 35.0%
!!! GTCATCCATTTTGAAGTATC+GGG - chr4_2:50669952-50669971 None:intergenic 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG - chr4_2:50669953-50669972 None:intergenic 35.0%
!!! AGTACTGGTGTGTTCTTTTT+TGG + chr4_2:50670166-50670185 Msa0604890:intron 35.0%
! AGCACTAACAATGTTCCTTT+TGG + chr4_2:50670202-50670221 Msa0604890:intron 35.0%
AATCAAGATACGATACGACT+AGG - chr4_2:50670440-50670459 None:intergenic 35.0%
CAATTATGAAACATGGACAC+TGG - chr4_2:50670539-50670558 None:intergenic 35.0%
ATGATTGTCACCAAATAGCT+AGG - chr4_2:50670928-50670947 None:intergenic 35.0%
! TAGCTATTTGGTGACAATCA+TGG + chr4_2:50670927-50670946 Msa0604890:intron 35.0%
! AGCTATTTGGTGACAATCAT+GGG + chr4_2:50670928-50670947 Msa0604890:intron 35.0%
AATATTCCTGGTTGACGAAT+GGG - chr4_2:50671018-50671037 None:intergenic 35.0%
!!! CGATCTAATGTTTTTTACGG+GGG - chr4_2:50671439-50671458 Msa0604900:intron 35.0%
AGTACACACTACAAAGTACA+CGG - chr4_2:50671594-50671613 Msa0604900:intron 35.0%
! AAAAATACTGTGAGGAGTGT+AGG + chr4_2:50671672-50671691 Msa0604890:three_prime_UTR 35.0%
TTCTCTAGGCAATCAACTAA+TGG - chr4_2:50671730-50671749 Msa0604900:intron 35.0%
AAATTTCTGCACATTGAGTG+AGG + chr4_2:50671782-50671801 Msa0604890:three_prime_UTR 35.0%
!! TGATGAATTAAGTTGAGGGA+AGG - chr4_2:50672203-50672222 Msa0604900:intron 35.0%
CAACTATCTCATGGAACATT+TGG - chr4_2:50672230-50672249 Msa0604900:intron 35.0%
GATTGTTTGCAACTATCTCA+TGG - chr4_2:50672239-50672258 Msa0604900:intron 35.0%
! AGTTCTGGCTGAATTATCAT+TGG - chr4_2:50672271-50672290 Msa0604900:intron 35.0%
! AGAATTTTTATGCGGAGTTC+TGG - chr4_2:50672286-50672305 Msa0604900:intron 35.0%
GAACTCCGCATAAAAATTCT+TGG + chr4_2:50672286-50672305 Msa0604890:three_prime_UTR 35.0%
! GGCTTCCAAGAATTTTTATG+CGG - chr4_2:50672294-50672313 Msa0604900:intron 35.0%
! GGTAGGCTTTTATCATATTC+TGG - chr4_2:50672437-50672456 Msa0604900:intron 35.0%
ATATTGAACATGAGTCTGGT+AGG - chr4_2:50672454-50672473 None:intergenic 35.0%
GGAAAGAAATGATGCAAACT+CGG - chr4_2:50672581-50672600 None:intergenic 35.0%
TCTTATATTTAGCGGCGCTA+AGG + chr4_2:50669311-50669330 Msa0604890:five_prime_UTR 40.0%
! TAGGTTACTTTGTGTATCGG+TGG - chr4_2:50669342-50669361 None:intergenic 40.0%
! CTTTCAGCTGAAGCTTCTTT+TGG - chr4_2:50669559-50669578 None:intergenic 40.0%
!! AATGAAATACCTGGCTCTGT+GGG + chr4_2:50669636-50669655 Msa0604890:CDS 40.0%
AAGGGAAGCAGATGAAAACA+AGG - chr4_2:50669697-50669716 None:intergenic 40.0%
CTCCCAAAGACATAAAGAGA+AGG - chr4_2:50669716-50669735 None:intergenic 40.0%
!! CAAATTATTACCGGTGTCGT+CGG + chr4_2:50669894-50669913 Msa0604890:intron 40.0%
ATACTCTCCTGTTACGTATC+GGG - chr4_2:50670005-50670024 None:intergenic 40.0%
GATACTCTCCTGTTACGTAT+CGG - chr4_2:50670006-50670025 None:intergenic 40.0%
ATACTCTCCTGATACGTATC+GGG - chr4_2:50670073-50670092 None:intergenic 40.0%
GATACTCTCCTGATACGTAT+CGG - chr4_2:50670074-50670093 None:intergenic 40.0%
AGAAATATCAGGGCACGTAT+CGG - chr4_2:50670113-50670132 None:intergenic 40.0%
!! AACACTGATGGTGCTCTTTT+TGG + chr4_2:50670234-50670253 Msa0604890:intron 40.0%
!! ACACTGATGGTGCTCTTTTT+GGG + chr4_2:50670235-50670254 Msa0604890:intron 40.0%
! ACTGCACCGATATGTCAATA+CGG - chr4_2:50670474-50670493 None:intergenic 40.0%
AAAAGCTTTGCAGGATCTCA+GGG - chr4_2:50670616-50670635 None:intergenic 40.0%
TAAAAGCTTTGCAGGATCTC+AGG - chr4_2:50670617-50670636 None:intergenic 40.0%
! TTTGGTGACAATCATGGGTT+TGG + chr4_2:50670933-50670952 Msa0604890:CDS 40.0%
! TCATGGGTTTGGTTATACCT+TGG + chr4_2:50670944-50670963 Msa0604890:CDS 40.0%
AATGCTAACGTGAAACTCCA+AGG - chr4_2:50670964-50670983 None:intergenic 40.0%
TTGGAGTTTCACGTTAGCAT+TGG + chr4_2:50670963-50670982 Msa0604890:CDS 40.0%
!! TTCACGTTAGCATTGGTAGA+TGG + chr4_2:50670970-50670989 Msa0604890:CDS 40.0%
CAATATTCCTGGTTGACGAA+TGG - chr4_2:50671019-50671038 None:intergenic 40.0%
ATCTACAACACTAGCTGTTG+AGG - chr4_2:50671262-50671281 Msa0604900:CDS 40.0%
AAGATCCTTGCGAATTTAGC+AGG - chr4_2:50671287-50671306 Msa0604900:CDS 40.0%
! ACCTGCAGCAAAGCTTTATA+GGG - chr4_2:50671314-50671333 Msa0604900:CDS 40.0%
! TACCTGCAGCAAAGCTTTAT+AGG - chr4_2:50671315-50671334 Msa0604900:CDS 40.0%
GTACAGGATATCTGCAGTTA+TGG + chr4_2:50671332-50671351 Msa0604890:CDS 40.0%
! CAGTTATGGCTTTTGTGTCA+TGG + chr4_2:50671346-50671365 Msa0604890:CDS 40.0%
GTTAAAAAGAGAGGATGCCA+AGG - chr4_2:50671379-50671398 Msa0604900:CDS 40.0%
ACAAAGAGGGTAGCAGATAA+AGG - chr4_2:50671401-50671420 Msa0604900:intron 40.0%
TGAAAACCAAGAGAGTTCTC+AGG + chr4_2:50671886-50671905 Msa0604890:three_prime_UTR 40.0%
!! CAAATTTGTTAGCAATCCCC+AGG + chr4_2:50671914-50671933 Msa0604890:three_prime_UTR 40.0%
ACAATTGGACTGTTGTCAAG+CGG - chr4_2:50671963-50671982 Msa0604900:intron 40.0%
TGGCTATGTCAAATGCAACA+CGG - chr4_2:50672038-50672057 Msa0604900:intron 40.0%
CATTTGACATAGCCATACCT+TGG + chr4_2:50672043-50672062 Msa0604890:three_prime_UTR 40.0%
GTTATTCGAAATAGAGTCCG+AGG + chr4_2:50672474-50672493 Msa0604890:three_prime_UTR 40.0%
!! GAATGAAATACCTGGCTCTG+TGG + chr4_2:50669635-50669654 Msa0604890:CDS 45.0%
ACAAGGTTTGGCCTAATCTG+AGG - chr4_2:50669680-50669699 None:intergenic 45.0%
TCTACAGCTACACAGCTTTC+TGG + chr4_2:50669742-50669761 Msa0604890:CDS 45.0%
GAAGCCCCGATACTTCAAAA+TGG + chr4_2:50669944-50669963 Msa0604890:intron 45.0%
!! GTTACGTATCGGGAAGTATC+AGG - chr4_2:50669995-50670014 None:intergenic 45.0%
GATACTTCCCGATACGTAAC+AGG + chr4_2:50669995-50670014 Msa0604890:intron 45.0%
! TGATACGTATCGGGAAGTGT+CGG - chr4_2:50670064-50670083 None:intergenic 45.0%
TCCGTATCGTATCTCGTATC+CGG + chr4_2:50670500-50670519 Msa0604890:intron 45.0%
AAATGTCCCATTCGTCAACC+AGG + chr4_2:50671009-50671028 Msa0604890:CDS 45.0%
CGTCAGTCCATACATGCATT+TGG + chr4_2:50671155-50671174 Msa0604890:intron 45.0%
GATCTCCTGCTAAATTCGCA+AGG + chr4_2:50671279-50671298 Msa0604890:CDS 45.0%
TAAAGCTTTGCTGCAGGTAC+AGG + chr4_2:50671316-50671335 Msa0604890:CDS 45.0%
TGTGTCATGGTTTCTGTCCT+TGG + chr4_2:50671359-50671378 Msa0604890:CDS 45.0%
AAGCGGAAATGTCATCCTTG+AGG - chr4_2:50671946-50671965 Msa0604900:intron 45.0%
GTAGACTGTAGCTGCACAAT+TGG - chr4_2:50671978-50671997 Msa0604900:intron 45.0%
CGTCTTAGATGAGACTATGC+AGG - chr4_2:50672008-50672027 Msa0604900:intron 45.0%
TTGACATAGCCATACCTTGG+AGG + chr4_2:50672046-50672065 Msa0604890:three_prime_UTR 45.0%
TTCTGTGCAGACAACTACTG+TGG - chr4_2:50672125-50672144 Msa0604900:intron 45.0%
TGAGAACCATTGTGCAGTCT+TGG - chr4_2:50672159-50672178 Msa0604900:intron 45.0%
TCACTGCAACTATCTCATGC+TGG - chr4_2:50672325-50672344 Msa0604900:intron 45.0%
AGTAAATGGCAGCAGCTTTG+AGG - chr4_2:50672602-50672621 None:intergenic 45.0%
!! AAAAAAATAAATTTAATCTT+CGG - chr4_2:50670028-50670047 None:intergenic 5.0%
!!! ATATTTGTTATTTAAAAAAA+TGG + chr4_2:50670366-50670385 Msa0604890:intron 5.0%
!!! AAAAGAAATATTTAAATTTT+AGG + chr4_2:50670693-50670712 Msa0604890:intron 5.0%
GCCAGCTTCATCCTCAGATT+AGG + chr4_2:50669666-50669685 Msa0604890:CDS 50.0%
GCCTAATCTGAGGATGAAGC+TGG - chr4_2:50669670-50669689 None:intergenic 50.0%
!! GGGAAGTATCAGGCAGGTAT+CGG - chr4_2:50669985-50670004 None:intergenic 50.0%
GACACTTCCCGATACGTATC+AGG + chr4_2:50670063-50670082 Msa0604890:intron 50.0%
ATGTGCTACGAGCCTATGAC+TGG + chr4_2:50670325-50670344 Msa0604890:intron 50.0%
CCCGGATACGAGATACGATA+CGG - chr4_2:50670504-50670523 None:intergenic 50.0%
CCGTATCGTATCTCGTATCC+GGG + chr4_2:50670501-50670520 Msa0604890:intron 50.0%
GCCCTATAAAGCTTTGCTGC+AGG + chr4_2:50671310-50671329 Msa0604890:CDS 50.0%
!! CTTCGAGTTGGACTGTAAGC+AGG - chr4_2:50671857-50671876 Msa0604900:intron 50.0%
GCATTGCCTGAGAACTCTCT+TGG - chr4_2:50671895-50671914 Msa0604900:intron 50.0%
AAATGTCATCCTTGAGGCCG+AGG - chr4_2:50671940-50671959 Msa0604900:intron 50.0%
CCATACCTTGGAGGTTCCAA+CGG + chr4_2:50672055-50672074 Msa0604890:three_prime_UTR 50.0%
TGATTCCGTTGGAACCTCCA+AGG - chr4_2:50672063-50672082 Msa0604900:CDS 50.0%
TGCTGCTGTCATGATTCCGT+TGG - chr4_2:50672074-50672093 Msa0604900:CDS 50.0%
TTGCAGCCAAGACTGCACAA+TGG + chr4_2:50672150-50672169 Msa0604890:three_prime_UTR 50.0%
CAATGGTTCTCACTCGCTGT+AGG + chr4_2:50672167-50672186 Msa0604890:three_prime_UTR 50.0%
TATCTCATGCTGGCAGTGGA+CGG - chr4_2:50672315-50672334 Msa0604900:intron 50.0%
CAACTATCTCATGCTGGCAG+TGG - chr4_2:50672319-50672338 Msa0604900:intron 50.0%
!! CGTATCGGGAAGTATCAGGC+AGG - chr4_2:50669991-50670010 None:intergenic 55.0%
!! CACTGGACATCTCTGAAGCC+CGG - chr4_2:50670522-50670541 None:intergenic 55.0%
! CGAGTTGGACTGTAAGCAGG+TGG - chr4_2:50671854-50671873 Msa0604900:intron 55.0%
TGTTAGCAATCCCCAGGCCT+CGG + chr4_2:50671920-50671939 Msa0604890:three_prime_UTR 55.0%
CCGTTGGAACCTCCAAGGTA+TGG - chr4_2:50672058-50672077 Msa0604900:intron 55.0%
! GCAGCAGTTTGCTCCTGAAC+CGG + chr4_2:50672088-50672107 Msa0604890:three_prime_UTR 55.0%
! TACTGTGGTAGCGCTAGAGC+CGG - chr4_2:50672110-50672129 Msa0604900:CDS 55.0%
GTCATCAACGCCGACGACAC+CGG - chr4_2:50669907-50669926 None:intergenic 60.0%
GGCAGCTGCTGCTAGTGTCA+GGG - chr4_2:50671241-50671260 Msa0604900:CDS 60.0%
AGGCAGCTGCTGCTAGTGTC+AGG - chr4_2:50671242-50671261 Msa0604900:CDS 60.0%
GCACTTGTGCCCACAGAGCC+AGG - chr4_2:50669648-50669667 None:intergenic 65.0%
ATCCTTGAGGCCGAGGCCTG+GGG - chr4_2:50671933-50671952 Msa0604900:intron 65.0%
CATCCTTGAGGCCGAGGCCT+GGG - chr4_2:50671934-50671953 Msa0604900:intron 65.0%
TCATCCTTGAGGCCGAGGCC+TGG - chr4_2:50671935-50671954 Msa0604900:intron 65.0%
! GGTAGCGCTAGAGCCGGTTC+AGG - chr4_2:50672104-50672123 Msa0604900:CDS 65.0%
ATCCCCAGGCCTCGGCCTCA+AGG + chr4_2:50671928-50671947 Msa0604890:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 50669310 50672634 50669310 ID=Msa0604890;Name=Msa0604890
chr4_2 mRNA 50669310 50672634 50669310 ID=Msa0604890-mRNA-1;Parent=Msa0604890;Name=Msa0604890-mRNA-1;_AED=0.18;_eAED=0.18;_QI=281|1|1|1|0.5|0.33|3|1212|166
chr4_2 exon 50669310 50669763 50669310 ID=Msa0604890-mRNA-1:exon:12000;Parent=Msa0604890-mRNA-1
chr4_2 exon 50670930 50671062 50670930 ID=Msa0604890-mRNA-1:exon:12001;Parent=Msa0604890-mRNA-1
chr4_2 exon 50671228 50672634 50671228 ID=Msa0604890-mRNA-1:exon:12002;Parent=Msa0604890-mRNA-1
chr4_2 five_prime_UTR 50669310 50669590 50669310 ID=Msa0604890-mRNA-1:five_prime_utr;Parent=Msa0604890-mRNA-1
chr4_2 CDS 50669591 50669763 50669591 ID=Msa0604890-mRNA-1:cds;Parent=Msa0604890-mRNA-1
chr4_2 CDS 50670930 50671062 50670930 ID=Msa0604890-mRNA-1:cds;Parent=Msa0604890-mRNA-1
chr4_2 CDS 50671228 50671422 50671228 ID=Msa0604890-mRNA-1:cds;Parent=Msa0604890-mRNA-1
chr4_2 three_prime_UTR 50671423 50672634 50671423 ID=Msa0604890-mRNA-1:three_prime_utr;Parent=Msa0604890-mRNA-1
Gene Sequence

>Msa0604890

ATGGTTAAGTTATATAGTTCAGAACCTTATAGAATAAGTTACATGAATGAAATACCTGGCTCTGTGGGCACAAGTGCCAGCTTCATCCTCAGATTAGGCCAAACCTTGTTTTCATCTGCTTCCCTTCTCTTTATGTCTTTGGGAGTTGAATTCTACAGCTACACAGCTTTCTGCTATTTGGTGACAATCATGGGTTTGGTTATACCTTGGAGTTTCACGTTAGCATTGGTAGATGGATACTCTGTACTAGTCAAATGTCCCATTCGTCAACCAGGAATATTGTTGATTATTGTTGTTGGAGATTGGGTATTATCAACCCTGACACTAGCAGCAGCTGCCTCAACAGCTAGTGTTGTAGATCTCCTGCTAAATTCGCAAGGATCTTTTTGCCCTATAAAGCTTTGCTGCAGGTACAGGATATCTGCAGTTATGGCTTTTGTGTCATGGTTTCTGTCCTTGGCATCCTCTCTTTTTAACCTTTATCTGCTACCCTCTTTGTGA

Protein sequence

>Msa0604890

MVKLYSSEPYRISYMNEIPGSVGTSASFILRLGQTLFSSASLLFMSLGVEFYSYTAFCYLVTIMGLVIPWSFTLALVDGYSVLVKCPIRQPGILLIIVVGDWVLSTLTLAAAASTASVVDLLLNSQGSFCPIKLCCRYRISAVMAFVSWFLSLASSLFNLYLLPSL*