AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146490 MtrunA17_Chr1g0155451 89.952 209 20 1 171 378 9 217 8.28e-137 389
Msa0146490 MtrunA17_Chr8g0372671 46.950 377 184 4 1 377 1 361 1.08e-114 338
Msa0146490 MtrunA17_Chr5g0404631 45.195 385 188 8 1 377 11 380 2.77e-112 333
Msa0146490 MtrunA17_Chr1g0155491 94.969 159 8 0 1 159 1 159 5.52e-109 317
Msa0146490 MtrunA17_Chr8g0372821 42.969 384 195 7 1 376 1 368 4.27e-108 322
Msa0146490 MtrunA17_Chr6g0475241 43.386 378 191 7 1 377 1 356 7.31e-106 315
Msa0146490 MtrunA17_Chr3g0107591 42.932 382 194 8 4 377 3 368 3.44e-105 314
Msa0146490 MtrunA17_Chr4g0008111 42.971 377 196 6 1 377 1 358 7.63e-104 310
Msa0146490 MtrunA17_Chr1g0155461 88.050 159 19 0 1 159 1 159 1.80e-99 293
Msa0146490 MtrunA17_Chr8g0343971 43.008 379 194 8 1 377 1 359 1.69e-98 296
Msa0146490 MtrunA17_Chr6g0475221 41.379 377 197 6 1 377 1 353 1.04e-97 294
Msa0146490 MtrunA17_Chr3g0144871 42.147 382 202 6 1 377 1 368 1.97e-97 294
Msa0146490 MtrunA17_Chr8g0343981 41.053 380 197 7 1 377 1 356 3.06e-94 286
Msa0146490 MtrunA17_Chr5g0419851 41.645 377 202 5 1 376 61 420 1.23e-93 286
Msa0146490 MtrunA17_Chr3g0107871 46.197 355 174 7 24 376 1 340 7.91e-92 279
Msa0146490 MtrunA17_Chr7g0252361 40.800 375 203 7 6 376 4 363 1.12e-86 266
Msa0146490 MtrunA17_Chr1g0155471 95.798 119 5 0 260 378 7 125 1.82e-79 239
Msa0146490 MtrunA17_Chr1g0155481 90.426 94 9 0 166 259 4 97 3.03e-58 186
Msa0146490 MtrunA17_Chr3g0100101 35.088 399 209 14 1 375 10 382 6.23e-57 190
Msa0146490 MtrunA17_Chr5g0444921 31.726 394 231 11 1 374 13 388 2.26e-54 184
Msa0146490 MtrunA17_Chr1g0208641 33.232 328 188 6 54 378 67 366 2.52e-51 175
Msa0146490 MtrunA17_Chr7g0252501 40.284 211 115 3 170 376 25 228 4.68e-43 149
Msa0146490 MtrunA17_Chr8g0372801 44.286 140 66 2 96 235 33 160 1.74e-35 128
Msa0146490 MtrunA17_Chr7g0252341 51.304 115 47 2 57 171 27 132 8.06e-30 112
Msa0146490 MtrunA17_Chr6g0455071 44.628 121 63 1 145 265 9 125 1.07e-29 111
Msa0146490 MtrunA17_Chr3g0099271 31.795 195 109 6 172 354 3 185 4.88e-23 95.9
Msa0146490 MtrunA17_Chr3g0099281 34.091 176 102 5 1 170 13 180 2.64e-20 87.8
Msa0146490 MtrunA17_Chr6g0455081 40.833 120 66 1 263 377 11 130 3.40e-19 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146490 AT1G19640.1 52.564 390 168 5 1 376 1 387 2.57e-126 369
Msa0146490 AT4G36470.1 40.751 373 207 5 7 377 10 370 1.32e-93 285
Msa0146490 AT5G66430.1 42.819 376 186 7 9 377 1 354 9.06e-92 280
Msa0146490 AT5G04380.3 43.386 378 189 8 4 377 33 389 1.05e-89 275
Msa0146490 AT3G11480.1 41.333 375 198 6 4 377 26 379 1.95e-87 269
Msa0146490 AT5G04380.1 42.593 378 185 9 4 377 29 378 2.81e-85 264
Msa0146490 AT5G04380.2 45.260 327 156 7 55 377 11 318 3.46e-83 256
Msa0146490 AT5G04370.1 40.576 382 194 7 4 378 36 391 6.28e-83 258
Msa0146490 AT5G04370.2 40.992 383 191 8 4 378 55 410 8.77e-83 258
Msa0146490 AT5G04370.3 40.576 382 194 7 4 378 41 396 1.25e-82 258
Msa0146490 AT5G38020.1 39.535 387 198 9 6 377 3 368 8.68e-82 254
Msa0146490 AT5G38020.2 40.828 338 166 8 55 377 11 329 5.12e-76 238
Msa0146490 AT3G21950.1 37.662 385 208 8 6 377 3 368 6.21e-73 232
Msa0146490 AT2G14060.1 37.760 384 209 8 4 377 9 372 7.50e-69 221
Msa0146490 AT3G21950.2 34.772 417 208 9 6 377 3 400 4.66e-66 215
Msa0146490 AT1G68040.1 34.085 355 206 8 6 356 10 340 6.80e-54 182
Msa0146490 AT5G55250.1 31.910 398 220 14 1 374 13 383 1.35e-53 182
Msa0146490 AT5G38100.1 32.493 357 208 7 9 359 10 339 4.45e-52 177
Msa0146490 AT5G37970.1 31.266 387 222 10 5 377 6 362 8.04e-52 177
Msa0146490 AT5G55250.2 33.036 336 183 11 59 374 32 345 8.35e-51 174
Msa0146490 AT1G15125.1 33.238 349 201 7 9 353 1 321 9.79e-51 174
Msa0146490 AT5G37990.1 30.570 386 226 9 5 377 6 362 9.14e-50 171
Msa0146490 AT5G38100.3 32.164 342 199 7 24 359 2 316 2.38e-49 169
Msa0146490 AT2G14060.2 40.650 246 126 5 4 248 9 235 3.36e-49 166
Msa0146490 AT5G38780.1 29.396 364 212 8 9 359 10 341 8.96e-44 155
Msa0146490 AT4G26420.1 30.579 363 216 9 6 353 10 351 3.84e-42 151
Msa0146490 AT5G38780.2 30.159 315 176 7 57 359 10 292 2.02e-41 148
Msa0146490 AT5G56300.1 27.793 367 236 8 3 356 14 364 1.76e-36 137
Msa0146490 AT3G44840.1 28.329 353 202 8 9 350 7 319 2.33e-34 130
Msa0146490 AT1G15125.2 33.333 255 145 6 9 259 1 234 4.13e-32 121
Msa0146490 AT4G26420.3 31.224 237 137 5 6 236 10 226 2.39e-30 117
Msa0146490 AT1G66720.1 26.000 350 216 9 9 350 9 323 3.23e-30 119
Msa0146490 AT5G38100.2 32.143 224 132 4 9 229 10 216 4.51e-30 116
Msa0146490 AT1G66700.1 26.685 371 228 10 1 362 1 336 4.98e-30 118
Msa0146490 AT5G38100.4 32.143 224 132 4 9 229 10 216 5.29e-30 116
Msa0146490 AT4G26420.2 31.197 234 135 5 9 236 1 214 1.46e-29 115
Msa0146490 AT3G44870.1 29.545 308 167 9 6 300 4 274 1.93e-29 117
Msa0146490 AT3G44860.1 30.820 305 170 8 6 300 4 277 5.43e-29 115
Msa0146490 AT1G66690.1 25.263 380 222 11 1 362 1 336 4.21e-26 107
Msa0146490 AT1G66700.3 28.936 235 136 6 1 229 1 210 1.25e-20 90.9

Find 111 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGATTGAGGTTGCATTTA+TGG 0.036903 1_4:+6193790 None:intergenic
GCAATTCCCATCTTCATTAT+TGG 0.151956 1_4:+6193872 None:intergenic
TCTATGCTAGAATATCATTT+TGG 0.176790 1_4:-6190477 Msa0146490:CDS
GATGAATGTTCCTTTCAATT+AGG 0.205674 1_4:+6194582 None:intergenic
AATGACCAAATTGATGTATT+TGG 0.221869 1_4:+6190383 None:intergenic
ATTTAATAAAACAAATATAT+AGG 0.250314 1_4:+6190330 None:intergenic
CCTTATGACCATGGTTTCTA+TGG 0.261315 1_4:-6191277 Msa0146490:intron
GTACCTTAGTACTAGATTAT+AGG 0.270645 1_4:+6194632 None:intergenic
TTTAATAAAACAAATATATA+GGG 0.273530 1_4:+6190331 None:intergenic
ATGAATGTTCCTTTCAATTA+GGG 0.284220 1_4:+6194583 None:intergenic
AAGATGGGAATTGCTGATTT+AGG 0.303966 1_4:-6193863 Msa0146490:CDS
GAAATTACCCTTAGGGCATT+AGG 0.321258 1_4:+6193827 None:intergenic
ATATATAACATTAGTTCCTT+TGG 0.330466 1_4:+6193752 None:intergenic
AGATTCAACCACAGCCCTTA+TGG 0.342594 1_4:+6190497 None:intergenic
ACATGTGAACGAATGATAAT+TGG 0.343008 1_4:-6190182 Msa0146490:three_prime_UTR
TATGCAGGCCCCTGGTGGTT+TGG 0.343156 1_4:-6191535 Msa0146490:intron
TGTCCAATAAGAAAAGAAAA+TGG 0.345113 1_4:-6194548 Msa0146490:exon
CAAATGATCCTCCACAAGTT+TGG 0.347302 1_4:+6190419 None:intergenic
ATGAAGCTTATGAAATTGAT+TGG 0.352222 1_4:-6190581 Msa0146490:CDS
AATCAATTTCATAAGCTTCA+TGG 0.357614 1_4:+6190583 None:intergenic
CACCCAACTGTTGCTATCAA+TGG 0.383419 1_4:-6191317 Msa0146490:CDS
TAGCCTCCATTGGCTTTCTC+AGG 0.386982 1_4:-6193534 Msa0146490:intron
CTATTTCTGAAATTACCCTT+AGG 0.395955 1_4:+6193819 None:intergenic
GTACTTGGTCCCCGTGAGTT+TGG 0.396382 1_4:-6190035 Msa0146490:three_prime_UTR
AAAACAATACAAGGACCATT+TGG 0.396425 1_4:+6190149 None:intergenic
TAGGACCAAATACATCAATT+TGG 0.396975 1_4:-6190388 Msa0146490:CDS
GAAACACTTCACATGAATAA+AGG 0.402226 1_4:-6194517 Msa0146490:CDS
GCTGATTTAGGTTGTTCATC+AGG 0.406185 1_4:-6193851 Msa0146490:CDS
AATCTAAAATAAAGTTGAAA+AGG 0.407881 1_4:+6190116 None:intergenic
ATTATCAACACTATTGAAGT+TGG 0.408665 1_4:+6190298 None:intergenic
TGAGTTTGGTTCAGTTGATA+AGG 0.413530 1_4:-6190021 None:intergenic
CCATAGAAACCATGGTCATA+AGG 0.419755 1_4:+6191277 None:intergenic
TGAGTCACGTTCTCAAGAAA+TGG 0.425270 1_4:-6191397 Msa0146490:CDS
AACATTAGTTCCTTTGGTGC+TGG 0.433345 1_4:+6193758 None:intergenic
TATGAAATTGATTGGGATGA+TGG 0.438195 1_4:-6190573 Msa0146490:CDS
AACGAGTTGCAAAGACCATA+AGG 0.441481 1_4:-6190512 Msa0146490:CDS
TACCTGGACAAAAGAGTTCA+TGG 0.442526 1_4:+6194474 None:intergenic
ACTCTTCTTCTAGCCTCCAT+TGG 0.444348 1_4:-6193544 Msa0146490:CDS
TTGGAGGATGAAAGAGGAAA+AGG 0.445045 1_4:-6191516 Msa0146490:CDS
TATTTCTGAAATTACCCTTA+GGG 0.453496 1_4:+6193820 None:intergenic
ATCAATTTCATAAGCTTCAT+GGG 0.453860 1_4:+6190584 None:intergenic
CAAAGTGAAGGGACTTAGTT+GGG 0.463227 1_4:+6193570 None:intergenic
TGATTCTATATGCAGGCCCC+TGG 0.466597 1_4:-6191543 Msa0146490:intron
CAAAAGTATGAACGAATGAG+TGG 0.467005 1_4:-6190091 Msa0146490:three_prime_UTR
AGTGATGATAAGATGATAAG+TGG 0.467732 1_4:-6190537 Msa0146490:CDS
ACCCAACTGTTGCTATCAAT+GGG 0.467790 1_4:-6191316 Msa0146490:CDS
TCAAAACACGGTGCATAGTA+AGG 0.468345 1_4:+6190654 None:intergenic
ACGATGGCCAATAATGAAGA+TGG 0.469521 1_4:-6193879 Msa0146490:CDS
AGGTACAAACTCCTTTGCTT+AGG 0.481722 1_4:-6194615 Msa0146490:five_prime_UTR
AGCAACAGTTGGGTGACGTT+GGG 0.481995 1_4:+6191325 None:intergenic
CGACCTATAATCTAGTACTA+AGG 0.483135 1_4:-6194635 Msa0146490:five_prime_UTR
TGGAGGATGAAAGAGGAAAA+GGG 0.488214 1_4:-6191515 Msa0146490:CDS
CTTTCATCCTCCAAACCACC+AGG 0.489278 1_4:+6191525 None:intergenic
ATCTAAAATAAAGTTGAAAA+GGG 0.511314 1_4:+6190117 None:intergenic
TGTTGAAGTCATTGGTGAAA+AGG 0.512921 1_4:+6193723 None:intergenic
GCAGGCCCCTGGTGGTTTGG+AGG 0.513877 1_4:-6191532 Msa0146490:intron
TCCCATTGATAGCAACAGTT+GGG 0.515861 1_4:+6191315 None:intergenic
GGGTCTAGTTGAAGAAGAAA+AGG 0.515871 1_4:-6190694 Msa0146490:CDS
ACAAAGTGAAGGGACTTAGT+TGG 0.517364 1_4:+6193569 None:intergenic
CATAGAAACCATGGTCATAA+GGG 0.519203 1_4:+6191278 None:intergenic
TGAAGCTTATGAAATTGATT+GGG 0.520122 1_4:-6190580 Msa0146490:CDS
TTCTTATTGGACAGATGAGA+AGG 0.520785 1_4:+6194558 None:intergenic
ATGAAATTGATTGGGATGAT+GGG 0.521002 1_4:-6190572 Msa0146490:CDS
TAATGGATGAGTTGTTTCAA+AGG 0.525941 1_4:-6190446 Msa0146490:CDS
TTCTATATGCAGGCCCCTGG+TGG 0.528673 1_4:-6191540 Msa0146490:intron
CATCAGGACCTAATGCCCTA+AGG 0.529141 1_4:-6193835 Msa0146490:CDS
AGCAACAAAGAAAGCTATTG+TGG 0.531669 1_4:-6193921 Msa0146490:CDS
TCAAAGGTTTGCCAAACTTG+TGG 0.533407 1_4:-6190430 Msa0146490:CDS
TTCCCATTGATAGCAACAGT+TGG 0.543485 1_4:+6191314 None:intergenic
AGAAAAGAAAATGGAAACTG+TGG 0.546339 1_4:-6194539 Msa0146490:exon
AGAAGAGTGCACAAAGTGAA+GGG 0.549114 1_4:+6193559 None:intergenic
CGTTCTCAAGAAATGGTGCA+TGG 0.550195 1_4:-6191390 Msa0146490:CDS
TACTTGTTGTCTAGTTACGT+TGG 0.550825 1_4:+6190055 None:intergenic
AAGAAGAGTGCACAAAGTGA+AGG 0.554920 1_4:+6193558 None:intergenic
ATCAACTGAACCAAACTCAC+GGG 0.560202 1_4:+6190025 None:intergenic
ATTCCCTGCCCATAAAAGAA+AGG 0.561138 1_4:+6191355 None:intergenic
GTTCTCAAGAAATGGTGCAT+GGG 0.561345 1_4:-6191389 Msa0146490:CDS
CGATGGCCAATAATGAAGAT+GGG 0.562710 1_4:-6193878 Msa0146490:CDS
ATATTGTTTCCCTAATTGAA+AGG 0.570272 1_4:-6194592 Msa0146490:five_prime_UTR
AAGGTTTGCCAAACTTGTGG+AGG 0.571113 1_4:-6190427 Msa0146490:CDS
TTCTCAAGAAATGGTGCATG+GGG 0.571897 1_4:-6191388 Msa0146490:CDS
TGCAAAGACCATAAGGGCTG+TGG 0.574140 1_4:-6190505 Msa0146490:CDS
GTAACTAGACAACAAGTACT+TGG 0.574519 1_4:-6190050 Msa0146490:three_prime_UTR
TGGTCGATTCAACATGATTG+AGG 0.574656 1_4:+6193778 None:intergenic
ATCAGGACCTAATGCCCTAA+GGG 0.574940 1_4:-6193834 Msa0146490:CDS
ACGAGTTGCAAAGACCATAA+GGG 0.576120 1_4:-6190511 Msa0146490:CDS
GATACGTGGACAACACGTAA+AGG 0.577936 1_4:+6190250 None:intergenic
ATTGGCGAGGAATATCCAAA+TGG 0.582584 1_4:-6190164 Msa0146490:three_prime_UTR
AATTAACCTGAGAAAGCCAA+TGG 0.584397 1_4:+6193528 None:intergenic
AGAGGAAAAGGGTTGAACAA+AGG 0.586631 1_4:-6191504 Msa0146490:CDS
GGAAACAATATCCTAAGCAA+AGG 0.587605 1_4:+6194604 None:intergenic
AGCACAGTCCCTTATGACCA+TGG 0.588105 1_4:-6191286 Msa0146490:CDS
AAAAGTATGAACGAATGAGT+GGG 0.588638 1_4:-6190090 Msa0146490:three_prime_UTR
TTCATCCTCCAAACCACCAG+GGG 0.588760 1_4:+6191527 None:intergenic
TAGCAACAGTTGGGTGACGT+TGG 0.590620 1_4:+6191324 None:intergenic
GTTGAATCGACCAGCACCAA+AGG 0.600184 1_4:-6193768 Msa0146490:CDS
GGTGGTTTGGAGGATGAAAG+AGG 0.602136 1_4:-6191522 Msa0146490:CDS
CTTCACATGAATAAAGGAGC+TGG 0.607314 1_4:-6194511 Msa0146490:CDS
AGTACTAGATTATAGGTCGA+TGG 0.618643 1_4:+6194639 None:intergenic
TTTCATCCTCCAAACCACCA+GGG 0.628257 1_4:+6191526 None:intergenic
TATCAACTGAACCAAACTCA+CGG 0.630238 1_4:+6190024 None:intergenic
GATAATCATCATAATCACAA+TGG 0.636262 1_4:-6193644 Msa0146490:CDS
TGAACGAATGATAATTGGCG+AGG 0.643177 1_4:-6190177 Msa0146490:three_prime_UTR
TCTAGTTGAAGAAGAAAAGG+TGG 0.646901 1_4:-6190691 Msa0146490:CDS
TTCTATGCTCAACAAAACGA+TGG 0.656489 1_4:-6193895 Msa0146490:CDS
TAACCTGAGAAAGCCAATGG+AGG 0.661820 1_4:+6193531 None:intergenic
GTAACGTACCATAGAAACCA+TGG 0.673939 1_4:+6191269 None:intergenic
AAAGTATGAACGAATGAGTG+GGG 0.680852 1_4:-6190089 Msa0146490:three_prime_UTR
AAGACGTAATAGAAGATACG+TGG 0.708706 1_4:+6190236 None:intergenic
TCAACTGAACCAAACTCACG+GGG 0.728435 1_4:+6190026 None:intergenic
TCTCAAGAAATGGTGCATGG+GGG 0.747092 1_4:-6191387 Msa0146490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTCTTTCAAATAA+TGG - chr1_4:6192355-6192374 Msa0146490:intron 10.0%
!! TAAATTTATTTATTTGCTTT+CGG - chr1_4:6193950-6193969 Msa0146490:CDS 10.0%
!! TTATAAAAGAACTAAATAGT+AGG - chr1_4:6190292-6190311 Msa0146490:three_prime_UTR 15.0%
!! TGTTTAAATAAAATATGTAG+AGG - chr1_4:6190706-6190725 Msa0146490:intron 15.0%
!! TCATTAAAGATAAAATACTT+TGG - chr1_4:6191333-6191352 Msa0146490:CDS 15.0%
!! TTTATAAAAATACATAGCTT+TGG - chr1_4:6191787-6191806 Msa0146490:intron 15.0%
!! TATAAAAGGAAATAATTCTT+TGG + chr1_4:6191951-6191970 None:intergenic 15.0%
!! ATACAATAGTTTAAATGAAA+GGG + chr1_4:6192030-6192049 None:intergenic 15.0%
!! AATACAATAGTTTAAATGAA+AGG + chr1_4:6192031-6192050 None:intergenic 15.0%
!! AAGTCAAATCATATAATATT+AGG - chr1_4:6192104-6192123 Msa0146490:intron 15.0%
!!! TATTTTTTATAGTATAGTAG+TGG + chr1_4:6192280-6192299 None:intergenic 15.0%
!! ACTACTATACTATAAAAAAT+AGG - chr1_4:6192279-6192298 Msa0146490:intron 15.0%
!! AACGAAAATTGATATTATAA+GGG + chr1_4:6192322-6192341 None:intergenic 15.0%
!!! AAGTTTAGAATTATTTAACA+AGG - chr1_4:6192501-6192520 Msa0146490:intron 15.0%
!!! AGTTTAGAATTATTTAACAA+GGG - chr1_4:6192502-6192521 Msa0146490:intron 15.0%
!!! CATATTTTTTAATGAGTTTT+TGG + chr1_4:6192626-6192645 None:intergenic 15.0%
!!! TTTGTTTTGTTGTATTTTTT+TGG + chr1_4:6192790-6192809 None:intergenic 15.0%
!!! TTTTTTTTGTTGAAAGAAAA+TGG - chr1_4:6192944-6192963 Msa0146490:intron 15.0%
!!! ATTATGAGTTTAAAATAAAC+CGG + chr1_4:6193923-6193942 None:intergenic 15.0%
!!! ATTTTTAATTCTTCAAAACA+CGG + chr1_4:6194034-6194053 None:intergenic 15.0%
!!! ATCTAAAATAAAGTTGAAAA+GGG + chr1_4:6194559-6194578 None:intergenic 15.0%
!!! AATCTAAAATAAAGTTGAAA+AGG + chr1_4:6194560-6194579 None:intergenic 15.0%
!!! TTTCCATTTTCTTTTCTTAT+TGG + chr1_4:6190131-6190150 None:intergenic 20.0%
!! TGATAATTGATTACTTTAGT+TGG + chr1_4:6190380-6190399 None:intergenic 20.0%
!!! TGGTATATTGTTTAGAATAT+GGG + chr1_4:6190513-6190532 None:intergenic 20.0%
!!! ATGGTATATTGTTTAGAATA+TGG + chr1_4:6190514-6190533 None:intergenic 20.0%
!! GTACAAATATAAACATGATT+TGG + chr1_4:6190621-6190640 None:intergenic 20.0%
!! ATATATAACATTAGTTCCTT+TGG + chr1_4:6190924-6190943 None:intergenic 20.0%
!! TCATCTTTCTACAAAAAAAT+AGG - chr1_4:6190990-6191009 Msa0146490:intron 20.0%
!! CATCTTTCTACAAAAAAATA+GGG - chr1_4:6190991-6191010 Msa0146490:intron 20.0%
!! AAGAACAAAGTATATGAATT+AGG + chr1_4:6191183-6191202 None:intergenic 20.0%
!!! AAATGACACTTATTTTGAAA+CGG - chr1_4:6191460-6191479 Msa0146490:CDS 20.0%
!!! AGCATTTTCCAAAATAAAAA+TGG + chr1_4:6191494-6191513 None:intergenic 20.0%
!! CAATCTTGTGATAAATAAAT+TGG + chr1_4:6191587-6191606 None:intergenic 20.0%
!!! TTTTATCTTCTCCAATTTTT+TGG - chr1_4:6191692-6191711 Msa0146490:intron 20.0%
!! TCAAATTTCTTCCAAAAAAT+TGG + chr1_4:6191706-6191725 None:intergenic 20.0%
!! CTTGGTTAAAGAATTATAAA+AGG + chr1_4:6191965-6191984 None:intergenic 20.0%
!!! CTTTTATAATTCTTTAACCA+AGG - chr1_4:6191963-6191982 Msa0146490:intron 20.0%
!! GAAATAAAGGAAATGTTAAT+CGG + chr1_4:6192000-6192019 None:intergenic 20.0%
!! AATGTTGTTCATATTGTAAT+GGG + chr1_4:6192136-6192155 None:intergenic 20.0%
!! AAATGTTGTTCATATTGTAA+TGG + chr1_4:6192137-6192156 None:intergenic 20.0%
!!! AATTGATCTTATTTGCAAAA+AGG - chr1_4:6192177-6192196 Msa0146490:intron 20.0%
!! GAACGAAAATTGATATTATA+AGG + chr1_4:6192323-6192342 None:intergenic 20.0%
!!! ATTTTTTAATGAGTTTTTGG+TGG + chr1_4:6192623-6192642 None:intergenic 20.0%
!! TTAATTGATGTAAACTCATA+TGG + chr1_4:6192858-6192877 None:intergenic 20.0%
!! ACTATTTATGCTACAAATAA+TGG - chr1_4:6192898-6192917 Msa0146490:intron 20.0%
!!! AATAATGGAAGACAAATTAA+TGG - chr1_4:6192913-6192932 Msa0146490:intron 20.0%
!!! TTTTTAGAGGATAATATGTA+AGG + chr1_4:6193046-6193065 None:intergenic 20.0%
!!! TATAAGGACTTTTTTTTTAG+AGG + chr1_4:6193059-6193078 None:intergenic 20.0%
!! GTACTAAAAATCATCAATAT+TGG - chr1_4:6193462-6193481 Msa0146490:intron 20.0%
!!! TCACTTTATTTTCTTTTTGA+AGG - chr1_4:6193882-6193901 Msa0146490:CDS 20.0%
!!! GTGTTTTGAAGAATTAAAAA+TGG - chr1_4:6194033-6194052 Msa0146490:intron 20.0%
!! CAACAAATAAAAACAATACA+AGG + chr1_4:6194536-6194555 None:intergenic 20.0%
! ATATTGTTTCCCTAATTGAA+AGG - chr1_4:6190081-6190100 Msa0146490:three_prime_UTR 25.0%
! ATGAATGTTCCTTTCAATTA+GGG + chr1_4:6190093-6190112 None:intergenic 25.0%
! TGTCCAATAAGAAAAGAAAA+TGG - chr1_4:6190125-6190144 Msa0146490:three_prime_UTR 25.0%
!!! TATTTCTGAAATTACCCTTA+GGG + chr1_4:6190856-6190875 None:intergenic 25.0%
! AAAAATGTTGTTGAAGTCAT+TGG + chr1_4:6190961-6190980 None:intergenic 25.0%
! AAAAAAATAGGGCAAGAAAA+GGG - chr1_4:6191002-6191021 Msa0146490:intron 25.0%
! GATAATCATCATAATCACAA+TGG - chr1_4:6191029-6191048 Msa0146490:intron 25.0%
! AATAGTCGATTAGGATAATT+TGG + chr1_4:6191303-6191322 None:intergenic 25.0%
! AAATTATCCTAATCGACTAT+TGG - chr1_4:6191302-6191321 Msa0146490:CDS 25.0%
! CAACACATAATTTCTATCTT+TGG + chr1_4:6191555-6191574 None:intergenic 25.0%
! CAAAGATAGAAATTATGTGT+TGG - chr1_4:6191553-6191572 Msa0146490:intron 25.0%
! TTGGAGAAGATAAAATAAGA+GGG + chr1_4:6191687-6191706 None:intergenic 25.0%
! ATTGGAGAAGATAAAATAAG+AGG + chr1_4:6191688-6191707 None:intergenic 25.0%
!!! GCGTAATACTTTTATTTCAA+GGG - chr1_4:6191809-6191828 Msa0146490:intron 25.0%
!! AAAGGGCATAATTGAAATAA+AGG + chr1_4:6192013-6192032 None:intergenic 25.0%
!! TAGTATAGTAGTGGAAATAT+GGG + chr1_4:6192271-6192290 None:intergenic 25.0%
!! ATAGTATAGTAGTGGAAATA+TGG + chr1_4:6192272-6192291 None:intergenic 25.0%
! AAATGTTGACCAAAAACATT+TGG + chr1_4:6192385-6192404 None:intergenic 25.0%
! ATTTATCCACCTTATATTGA+CGG + chr1_4:6192830-6192849 None:intergenic 25.0%
! TTGATGAGTAAGTAAGAATT+TGG - chr1_4:6193001-6193020 Msa0146490:intron 25.0%
! AAGTCCTTATATGTTGAAAA+TGG - chr1_4:6193068-6193087 Msa0146490:intron 25.0%
!! GAATCCATTTTCAACATATA+AGG + chr1_4:6193075-6193094 None:intergenic 25.0%
!!! CTAATTTTGATTCTATATGC+AGG - chr1_4:6193123-6193142 Msa0146490:intron 25.0%
!! GAAACTGTAAAAAGTCATTT+TGG + chr1_4:6193255-6193274 None:intergenic 25.0%
! ATAGAATAGATCCAAAGTTA+AGG - chr1_4:6193678-6193697 Msa0146490:CDS 25.0%
! TAGAATAGATCCAAAGTTAA+GGG - chr1_4:6193679-6193698 Msa0146490:CDS 25.0%
! TTAAAATGAACATAGGTGAA+TGG + chr1_4:6193736-6193755 None:intergenic 25.0%
! GAAAATCTTATTAGATGTTG+TGG + chr1_4:6193827-6193846 None:intergenic 25.0%
! AAAATGGAGATTGAAAAAGA+AGG - chr1_4:6194049-6194068 Msa0146490:intron 25.0%
! AAATGGAGATTGAAAAAGAA+GGG - chr1_4:6194050-6194069 Msa0146490:intron 25.0%
! ATCAATTTCATAAGCTTCAT+GGG + chr1_4:6194092-6194111 None:intergenic 25.0%
! AATCAATTTCATAAGCTTCA+TGG + chr1_4:6194093-6194112 None:intergenic 25.0%
! ATGAAGCTTATGAAATTGAT+TGG - chr1_4:6194092-6194111 Msa0146490:intron 25.0%
! TGAAGCTTATGAAATTGATT+GGG - chr1_4:6194093-6194112 Msa0146490:intron 25.0%
!! TCTATGCTAGAATATCATTT+TGG - chr1_4:6194196-6194215 Msa0146490:intron 25.0%
!! CTATGCTAGAATATCATTTT+GGG - chr1_4:6194197-6194216 Msa0146490:intron 25.0%
! AATGACCAAATTGATGTATT+TGG + chr1_4:6194293-6194312 None:intergenic 25.0%
! ATTATCAACACTATTGAAGT+TGG + chr1_4:6194378-6194397 None:intergenic 25.0%
GTACCTTAGTACTAGATTAT+AGG + chr1_4:6190044-6190063 None:intergenic 30.0%
GATGAATGTTCCTTTCAATT+AGG + chr1_4:6190094-6190113 None:intergenic 30.0%
AGAAAAGAAAATGGAAACTG+TGG - chr1_4:6190134-6190153 Msa0146490:three_prime_UTR 30.0%
GAAACACTTCACATGAATAA+AGG - chr1_4:6190156-6190175 Msa0146490:three_prime_UTR 30.0%
AGAACTAAATAGTAGGTAGT+AGG - chr1_4:6190299-6190318 Msa0146490:three_prime_UTR 30.0%
GAACTAAATAGTAGGTAGTA+GGG - chr1_4:6190300-6190319 Msa0146490:three_prime_UTR 30.0%
TATGTTTAGTCGAATCTCAA+CGG - chr1_4:6190540-6190559 Msa0146490:CDS 30.0%
!! CTATTTCTGAAATTACCCTT+AGG + chr1_4:6190857-6190876 None:intergenic 30.0%
CAAAAAAATAGGGCAAGAAA+AGG - chr1_4:6191001-6191020 Msa0146490:intron 30.0%
AAACAAACCAATAGTCGATT+AGG + chr1_4:6191312-6191331 None:intergenic 30.0%
AACTTTAACATGTGTCCTAA+AGG - chr1_4:6191646-6191665 Msa0146490:intron 30.0%
ATCTAGCAATCAGTGTTAAA+TGG + chr1_4:6191735-6191754 None:intergenic 30.0%
!! GGCGTAATACTTTTATTTCA+AGG - chr1_4:6191808-6191827 Msa0146490:intron 30.0%
TAATTCTTTAACCAAGGTCT+CGG - chr1_4:6191969-6191988 Msa0146490:intron 30.0%
! AATGGTTCTCCAAATGTTTT+TGG - chr1_4:6192373-6192392 Msa0146490:intron 30.0%
!!! TTTAATGAGTTTTTGGTGGT+AGG + chr1_4:6192619-6192638 None:intergenic 30.0%
CGAAATTCGATATATTTGCA+AGG - chr1_4:6192746-6192765 Msa0146490:intron 30.0%
CTACATTATCCGTCAATATA+AGG - chr1_4:6192818-6192837 Msa0146490:intron 30.0%
CTTACTCATCAAGAAAATGT+TGG + chr1_4:6192993-6193012 None:intergenic 30.0%
! TAAGCTTTTAGCACACAATT+GGG + chr1_4:6193220-6193239 None:intergenic 30.0%
! ATAAGCTTTTAGCACACAAT+TGG + chr1_4:6193221-6193240 None:intergenic 30.0%
! ACAAATGGTCCTTTCTTTTA+TGG - chr1_4:6193309-6193328 Msa0146490:intron 30.0%
! CAAATGGTCCTTTCTTTTAT+GGG - chr1_4:6193310-6193329 Msa0146490:intron 30.0%
! TGGTGGTTTAAAATGAACAT+AGG + chr1_4:6193743-6193762 None:intergenic 30.0%
AGTCCAATCAAAAAATGGAA+AGG + chr1_4:6193784-6193803 None:intergenic 30.0%
! TGTTGTGGTCTAAAATAAAC+CGG + chr1_4:6193812-6193831 None:intergenic 30.0%
! ATGAGTTTAAAATAAACCGG+AGG + chr1_4:6193920-6193939 None:intergenic 30.0%
TTTATTTGCTTTCGGTACAT+AGG - chr1_4:6193958-6193977 Msa0146490:intron 30.0%
TTATTTGCTTTCGGTACATA+GGG - chr1_4:6193959-6193978 Msa0146490:intron 30.0%
TATGAAATTGATTGGGATGA+TGG - chr1_4:6194100-6194119 Msa0146490:intron 30.0%
ATGAAATTGATTGGGATGAT+GGG - chr1_4:6194101-6194120 Msa0146490:intron 30.0%
AGTGATGATAAGATGATAAG+TGG - chr1_4:6194136-6194155 Msa0146490:intron 30.0%
!! TCATTTTGGGAGTCATATAA+TGG - chr1_4:6194210-6194229 Msa0146490:intron 30.0%
! TAATGGATGAGTTGTTTCAA+AGG - chr1_4:6194227-6194246 Msa0146490:intron 30.0%
AGGATCATTTGTCAAAAACT+AGG - chr1_4:6194266-6194285 Msa0146490:intron 30.0%
TAGGACCAAATACATCAATT+TGG - chr1_4:6194285-6194304 Msa0146490:intron 30.0%
ACATGTGAACGAATGATAAT+TGG - chr1_4:6194491-6194510 Msa0146490:CDS 30.0%
AAAACAATACAAGGACCATT+TGG + chr1_4:6194527-6194546 None:intergenic 30.0%
! AAAAGTATGAACGAATGAGT+GGG - chr1_4:6194583-6194602 Msa0146490:five_prime_UTR 30.0%
AGTACTAGATTATAGGTCGA+TGG + chr1_4:6190037-6190056 None:intergenic 35.0%
CGACCTATAATCTAGTACTA+AGG - chr1_4:6190038-6190057 Msa0146490:three_prime_UTR 35.0%
GGAAACAATATCCTAAGCAA+AGG + chr1_4:6190072-6190091 None:intergenic 35.0%
TTCTTATTGGACAGATGAGA+AGG + chr1_4:6190118-6190137 None:intergenic 35.0%
!! TACCAGACTCTAGAATATCA+AGG - chr1_4:6190415-6190434 Msa0146490:CDS 35.0%
!! AACCTTGATATTCTAGAGTC+TGG + chr1_4:6190420-6190439 None:intergenic 35.0%
ATCCCTTGATGAGAATATGA+TGG - chr1_4:6190444-6190463 Msa0146490:CDS 35.0%
GACCATCATATTCTCATCAA+GGG + chr1_4:6190449-6190468 None:intergenic 35.0%
TGACCATCATATTCTCATCA+AGG + chr1_4:6190450-6190469 None:intergenic 35.0%
TTGATGAGAATATGATGGTC+AGG - chr1_4:6190449-6190468 Msa0146490:CDS 35.0%
TCGACTAAACATATAGTGCA+TGG + chr1_4:6190533-6190552 None:intergenic 35.0%
AGCAACAAAGAAAGCTATTG+TGG - chr1_4:6190752-6190771 Msa0146490:intron 35.0%
TTCTATGCTCAACAAAACGA+TGG - chr1_4:6190778-6190797 Msa0146490:intron 35.0%
GCAATTCCCATCTTCATTAT+TGG + chr1_4:6190804-6190823 None:intergenic 35.0%
!! AAGATGGGAATTGCTGATTT+AGG - chr1_4:6190810-6190829 Msa0146490:intron 35.0%
CATGATTGAGGTTGCATTTA+TGG + chr1_4:6190886-6190905 None:intergenic 35.0%
TGTTGAAGTCATTGGTGAAA+AGG + chr1_4:6190953-6190972 None:intergenic 35.0%
AATTAACCTGAGAAAGCCAA+TGG + chr1_4:6191148-6191167 None:intergenic 35.0%
!!! TGACACTTATTTTGAAACGG+AGG - chr1_4:6191463-6191482 Msa0146490:CDS 35.0%
!!! GACACTTATTTTGAAACGGA+GGG - chr1_4:6191464-6191483 Msa0146490:CDS 35.0%
!!! AGGGAGTGCCATTTTTATTT+TGG - chr1_4:6191483-6191502 Msa0146490:CDS 35.0%
!! ATTTCAAGGGTCTTGTTAAC+CGG - chr1_4:6191822-6191841 Msa0146490:intron 35.0%
AATTCTTTAACCAAGGTCTC+GGG - chr1_4:6191970-6191989 Msa0146490:intron 35.0%
CATTATCCGTCAATATAAGG+TGG - chr1_4:6192821-6192840 Msa0146490:intron 35.0%
CATAGAAACCATGGTCATAA+GGG + chr1_4:6193398-6193417 None:intergenic 35.0%
ATTAGAACCCTTAGATACGT+GGG + chr1_4:6193436-6193455 None:intergenic 35.0%
AATTAGAACCCTTAGATACG+TGG + chr1_4:6193437-6193456 None:intergenic 35.0%
AAATGAACATAGGTGAATGG+TGG + chr1_4:6193733-6193752 None:intergenic 35.0%
AAAATGGAAAGGCCAAAGAT+GGG + chr1_4:6193773-6193792 None:intergenic 35.0%
AAAAATGGAAAGGCCAAAGA+TGG + chr1_4:6193774-6193793 None:intergenic 35.0%
!!! TGGCCTTTCCATTTTTTGAT+TGG - chr1_4:6193778-6193797 Msa0146490:CDS 35.0%
AGGTGAGTCCAATCAAAAAA+TGG + chr1_4:6193789-6193808 None:intergenic 35.0%
TCTAGTTGAAGAAGAAAAGG+TGG - chr1_4:6193982-6194001 Msa0146490:intron 35.0%
TGAAAAAGAAGGGTCATTCA+TGG - chr1_4:6194060-6194079 Msa0146490:intron 35.0%
AAGACGTAATAGAAGATACG+TGG + chr1_4:6194440-6194459 None:intergenic 35.0%
! CAAAAGTATGAACGAATGAG+TGG - chr1_4:6194582-6194601 Msa0146490:five_prime_UTR 35.0%
AAAGTATGAACGAATGAGTG+GGG - chr1_4:6194584-6194603 Msa0146490:five_prime_UTR 35.0%
!! TACTTGTTGTCTAGTTACGT+TGG + chr1_4:6194621-6194640 None:intergenic 35.0%
GTAACTAGACAACAAGTACT+TGG - chr1_4:6194623-6194642 Msa0146490:five_prime_UTR 35.0%
TATCAACTGAACCAAACTCA+CGG + chr1_4:6194652-6194671 None:intergenic 35.0%
AGGTACAAACTCCTTTGCTT+AGG - chr1_4:6190058-6190077 Msa0146490:three_prime_UTR 40.0%
CTTCACATGAATAAAGGAGC+TGG - chr1_4:6190162-6190181 Msa0146490:three_prime_UTR 40.0%
TACCTGGACAAAAGAGTTCA+TGG + chr1_4:6190202-6190221 None:intergenic 40.0%
TTTAGTCGAATCTCAACGGT+TGG - chr1_4:6190544-6190563 Msa0146490:CDS 40.0%
! TCCATTTGTTGACATTCGAC+TGG - chr1_4:6190585-6190604 Msa0146490:CDS 40.0%
TCCAGTCGAATGTCAACAAA+TGG + chr1_4:6190589-6190608 None:intergenic 40.0%
ACGATGGCCAATAATGAAGA+TGG - chr1_4:6190794-6190813 Msa0146490:intron 40.0%
CGATGGCCAATAATGAAGAT+GGG - chr1_4:6190795-6190814 Msa0146490:intron 40.0%
!! GCTGATTTAGGTTGTTCATC+AGG - chr1_4:6190822-6190841 Msa0146490:intron 40.0%
! GAAATTACCCTTAGGGCATT+AGG + chr1_4:6190849-6190868 None:intergenic 40.0%
! TGGTCGATTCAACATGATTG+AGG + chr1_4:6190898-6190917 None:intergenic 40.0%
! AACATTAGTTCCTTTGGTGC+TGG + chr1_4:6190918-6190937 None:intergenic 40.0%
!! ATAAAAAGTGCCTGGTACAG+CGG + chr1_4:6191072-6191091 None:intergenic 40.0%
!! AGTCTACCATAAAAAGTGCC+TGG + chr1_4:6191080-6191099 None:intergenic 40.0%
CAAAGTGAAGGGACTTAGTT+GGG + chr1_4:6191106-6191125 None:intergenic 40.0%
ACAAAGTGAAGGGACTTAGT+TGG + chr1_4:6191107-6191126 None:intergenic 40.0%
! AGAAGAGTGCACAAAGTGAA+GGG + chr1_4:6191117-6191136 None:intergenic 40.0%
! AAGAAGAGTGCACAAAGTGA+AGG + chr1_4:6191118-6191137 None:intergenic 40.0%
AAATGCTAACATGTGCCCTA+AGG - chr1_4:6191507-6191526 Msa0146490:CDS 40.0%
AATGCTAACATGTGCCCTAA+GGG - chr1_4:6191508-6191527 Msa0146490:CDS 40.0%
TCATGCTAACATGTGCCTTT+AGG + chr1_4:6191664-6191683 None:intergenic 40.0%
TTTCTTAACCAGTACCCTAG+GGG + chr1_4:6191850-6191869 None:intergenic 40.0%
GTTTCTTAACCAGTACCCTA+GGG + chr1_4:6191851-6191870 None:intergenic 40.0%
AGTTTCTTAACCAGTACCCT+AGG + chr1_4:6191852-6191871 None:intergenic 40.0%
ATTCTTTAACCAAGGTCTCG+GGG - chr1_4:6191971-6191990 Msa0146490:intron 40.0%
TTGGAGGATGAAAGAGGAAA+AGG - chr1_4:6193157-6193176 Msa0146490:intron 40.0%
TGGAGGATGAAAGAGGAAAA+GGG - chr1_4:6193158-6193177 Msa0146490:intron 40.0%
AGAGGAAAAGGGTTGAACAA+AGG - chr1_4:6193169-6193188 Msa0146490:intron 40.0%
TGAGTCACGTTCTCAAGAAA+TGG - chr1_4:6193276-6193295 Msa0146490:intron 40.0%
GTTCTCAAGAAATGGTGCAT+GGG - chr1_4:6193284-6193303 Msa0146490:intron 40.0%
TTCTCAAGAAATGGTGCATG+GGG - chr1_4:6193285-6193304 Msa0146490:intron 40.0%
ATTCCCTGCCCATAAAAGAA+AGG + chr1_4:6193321-6193340 None:intergenic 40.0%
! TTTTATGGGCAGGGAATCAA+TGG - chr1_4:6193324-6193343 Msa0146490:intron 40.0%
ACCCAACTGTTGCTATCAAT+GGG - chr1_4:6193357-6193376 Msa0146490:intron 40.0%
! TCCCATTGATAGCAACAGTT+GGG + chr1_4:6193361-6193380 None:intergenic 40.0%
! TTCCCATTGATAGCAACAGT+TGG + chr1_4:6193362-6193381 None:intergenic 40.0%
CCATAGAAACCATGGTCATA+AGG + chr1_4:6193399-6193418 None:intergenic 40.0%
CCTTATGACCATGGTTTCTA+TGG - chr1_4:6193396-6193415 Msa0146490:intron 40.0%
GTAACGTACCATAGAAACCA+TGG + chr1_4:6193407-6193426 None:intergenic 40.0%
ACCTATTTCCCACGTATCTA+AGG - chr1_4:6193425-6193444 Msa0146490:intron 40.0%
CCTATTTCCCACGTATCTAA+GGG - chr1_4:6193426-6193445 Msa0146490:intron 40.0%
CAAAGATGGGTATACTTTGG+TGG + chr1_4:6193760-6193779 None:intergenic 40.0%
CACCAAAGTATACCCATCTT+TGG - chr1_4:6193758-6193777 Msa0146490:CDS 40.0%
!! TTTTTGATTGGACTCACCTC+CGG - chr1_4:6193790-6193809 Msa0146490:CDS 40.0%
! TGTGGTCTAAAATAAACCGG+AGG + chr1_4:6193809-6193828 None:intergenic 40.0%
AAGGATGATGATATCACCTC+CGG - chr1_4:6193901-6193920 Msa0146490:CDS 40.0%
GGGTCTAGTTGAAGAAGAAA+AGG - chr1_4:6193979-6193998 Msa0146490:intron 40.0%
TCAAAACACGGTGCATAGTA+AGG + chr1_4:6194022-6194041 None:intergenic 40.0%
AACGAGTTGCAAAGACCATA+AGG - chr1_4:6194161-6194180 Msa0146490:intron 40.0%
ACGAGTTGCAAAGACCATAA+GGG - chr1_4:6194162-6194181 Msa0146490:intron 40.0%
TCAAAGGTTTGCCAAACTTG+TGG - chr1_4:6194243-6194262 Msa0146490:intron 40.0%
CAAATGATCCTCCACAAGTT+TGG + chr1_4:6194257-6194276 None:intergenic 40.0%
TGAACGAATGATAATTGGCG+AGG - chr1_4:6194496-6194515 Msa0146490:CDS 40.0%
ATTGGCGAGGAATATCCAAA+TGG - chr1_4:6194509-6194528 Msa0146490:CDS 40.0%
ATCAACTGAACCAAACTCAC+GGG + chr1_4:6194651-6194670 None:intergenic 40.0%
! TGCCATGAACTCTTTTGTCC+AGG - chr1_4:6190197-6190216 Msa0146490:three_prime_UTR 45.0%
! GAACTCTTTTGTCCAGGTAC+TGG - chr1_4:6190203-6190222 Msa0146490:three_prime_UTR 45.0%
!!! TCTTTTGTCCAGGTACTGGT+TGG - chr1_4:6190207-6190226 Msa0146490:three_prime_UTR 45.0%
TCTTAAAGCCAACCAGTACC+TGG + chr1_4:6190218-6190237 None:intergenic 45.0%
AGTAGGTAGTAGGGTTCAAG+TGG - chr1_4:6190309-6190328 Msa0146490:three_prime_UTR 45.0%
ATCAGGACCTAATGCCCTAA+GGG - chr1_4:6190839-6190858 Msa0146490:intron 45.0%
!!! TGTTTTGTTTCCGCTGTACC+AGG - chr1_4:6191059-6191078 Msa0146490:intron 45.0%
!! GCTGTACCAGGCACTTTTTA+TGG - chr1_4:6191071-6191090 Msa0146490:intron 45.0%
ACTCTTCTTCTAGCCTCCAT+TGG - chr1_4:6191129-6191148 Msa0146490:intron 45.0%
TAACCTGAGAAAGCCAATGG+AGG + chr1_4:6191145-6191164 None:intergenic 45.0%
ATTTGCCACGTGTCGAAGAT+GGG + chr1_4:6193100-6193119 None:intergenic 45.0%
AATTTGCCACGTGTCGAAGA+TGG + chr1_4:6193101-6193120 None:intergenic 45.0%
TTTCATCCTCCAAACCACCA+GGG + chr1_4:6193150-6193169 None:intergenic 45.0%
CGTTCTCAAGAAATGGTGCA+TGG - chr1_4:6193283-6193302 Msa0146490:intron 45.0%
TCTCAAGAAATGGTGCATGG+GGG - chr1_4:6193286-6193305 Msa0146490:intron 45.0%
! TGGTCCTTTCTTTTATGGGC+AGG - chr1_4:6193314-6193333 Msa0146490:intron 45.0%
! GGTCCTTTCTTTTATGGGCA+GGG - chr1_4:6193315-6193334 Msa0146490:intron 45.0%
CACCCAACTGTTGCTATCAA+TGG - chr1_4:6193356-6193375 Msa0146490:intron 45.0%
CCCTTAGATACGTGGGAAAT+AGG + chr1_4:6193429-6193448 None:intergenic 45.0%
GACACAAATGGAACCACTCA+TGG + chr1_4:6193705-6193724 None:intergenic 45.0%
! ATGGTGGAGGATGACACAAA+TGG + chr1_4:6193717-6193736 None:intergenic 45.0%
TGAACATAGGTGAATGGTGG+AGG + chr1_4:6193730-6193749 None:intergenic 45.0%
GGCCAAAGATGGGTATACTT+TGG + chr1_4:6193763-6193782 None:intergenic 45.0%
AGATTCAACCACAGCCCTTA+TGG + chr1_4:6194179-6194198 None:intergenic 45.0%
AAGGTTTGCCAAACTTGTGG+AGG - chr1_4:6194246-6194265 Msa0146490:intron 45.0%
GATACGTGGACAACACGTAA+AGG + chr1_4:6194426-6194445 None:intergenic 45.0%
TCAACTGAACCAAACTCACG+GGG + chr1_4:6194650-6194669 None:intergenic 45.0%
!! TTTAATAAAACAAATATATA+GGG + chr1_4:6194345-6194364 None:intergenic 5.0%
!! ATTTAATAAAACAAATATAT+AGG + chr1_4:6194346-6194365 None:intergenic 5.0%
!!! TATATTTGTTTTATTAAATA+TGG - chr1_4:6194347-6194366 Msa0146490:intron 5.0%
CATCAGGACCTAATGCCCTA+AGG - chr1_4:6190838-6190857 Msa0146490:intron 50.0%
GTTGAATCGACCAGCACCAA+AGG - chr1_4:6190905-6190924 Msa0146490:intron 50.0%
!! TAGCCTCCATTGGCTTTCTC+AGG - chr1_4:6191139-6191158 Msa0146490:intron 50.0%
GCATGTGTCATGTGCCCTTA+GGG + chr1_4:6191525-6191544 None:intergenic 50.0%
AGCATGTGTCATGTGCCCTT+AGG + chr1_4:6191526-6191545 None:intergenic 50.0%
AGGGCACATGACACATGCTA+AGG - chr1_4:6191527-6191546 Msa0146490:CDS 50.0%
TTTGCCACGTGTCGAAGATG+GGG + chr1_4:6193099-6193118 None:intergenic 50.0%
TGATTCTATATGCAGGCCCC+TGG - chr1_4:6193130-6193149 Msa0146490:intron 50.0%
TTCATCCTCCAAACCACCAG+GGG + chr1_4:6193149-6193168 None:intergenic 50.0%
CTTTCATCCTCCAAACCACC+AGG + chr1_4:6193151-6193170 None:intergenic 50.0%
! GGTGGTTTGGAGGATGAAAG+AGG - chr1_4:6193151-6193170 Msa0146490:intron 50.0%
AATGGTGCATGGGGGACAAA+TGG - chr1_4:6193294-6193313 Msa0146490:intron 50.0%
AGCAACAGTTGGGTGACGTT+GGG + chr1_4:6193351-6193370 None:intergenic 50.0%
TAGCAACAGTTGGGTGACGT+TGG + chr1_4:6193352-6193371 None:intergenic 50.0%
AGCACAGTCCCTTATGACCA+TGG - chr1_4:6193387-6193406 Msa0146490:intron 50.0%
CCACTCATGGCCCTTAACTT+TGG + chr1_4:6193692-6193711 None:intergenic 50.0%
CCAAAGTTAAGGGCCATGAG+TGG - chr1_4:6193689-6193708 Msa0146490:CDS 50.0%
TGCAAAGACCATAAGGGCTG+TGG - chr1_4:6194168-6194187 Msa0146490:intron 50.0%
TCTTGTTAACCGGTGCCCCT+AGG - chr1_4:6191832-6191851 Msa0146490:intron 55.0%
CTTGTTAACCGGTGCCCCTA+GGG - chr1_4:6191833-6191852 Msa0146490:intron 55.0%
TTCACCCCATCTTCGACACG+TGG - chr1_4:6193092-6193111 Msa0146490:intron 55.0%
TTCTATATGCAGGCCCCTGG+TGG - chr1_4:6193133-6193152 Msa0146490:intron 55.0%
GTACTTGGTCCCCGTGAGTT+TGG - chr1_4:6194638-6194657 Msa0146490:five_prime_UTR 55.0%
! AACCAGTACCCTAGGGGCAC+CGG + chr1_4:6191844-6191863 None:intergenic 60.0%
! AATCGGTGTCCCCGAGACCT+TGG + chr1_4:6191983-6192002 None:intergenic 60.0%
TATGCAGGCCCCTGGTGGTT+TGG - chr1_4:6193138-6193157 Msa0146490:intron 60.0%
AACCGGTGCCCCTAGGGTAC+TGG - chr1_4:6191839-6191858 Msa0146490:intron 65.0%
! GCAGGCCCCTGGTGGTTTGG+AGG - chr1_4:6193141-6193160 Msa0146490:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6190024 6194671 6190024 ID=Msa0146490;Name=Msa0146490
chr1_4 mRNA 6190024 6194671 6190024 ID=Msa0146490-mRNA-1;Parent=Msa0146490;Name=Msa0146490-mRNA-1;_AED=0.14;_eAED=0.14;_QI=120|1|1|1|1|1|4|338|378
chr1_4 exon 6190024 6190715 6190024 ID=Msa0146490-mRNA-1:exon:2758;Parent=Msa0146490-mRNA-1
chr1_4 exon 6191278 6191550 6191278 ID=Msa0146490-mRNA-1:exon:2757;Parent=Msa0146490-mRNA-1
chr1_4 exon 6193535 6193969 6193535 ID=Msa0146490-mRNA-1:exon:2756;Parent=Msa0146490-mRNA-1
chr1_4 exon 6194477 6194671 6194477 ID=Msa0146490-mRNA-1:exon:2755;Parent=Msa0146490-mRNA-1
chr1_4 five_prime_UTR 6194552 6194671 6194552 ID=Msa0146490-mRNA-1:five_prime_utr;Parent=Msa0146490-mRNA-1
chr1_4 CDS 6194477 6194551 6194477 ID=Msa0146490-mRNA-1:cds;Parent=Msa0146490-mRNA-1
chr1_4 CDS 6193535 6193969 6193535 ID=Msa0146490-mRNA-1:cds;Parent=Msa0146490-mRNA-1
chr1_4 CDS 6191278 6191550 6191278 ID=Msa0146490-mRNA-1:cds;Parent=Msa0146490-mRNA-1
chr1_4 CDS 6190362 6190715 6190362 ID=Msa0146490-mRNA-1:cds;Parent=Msa0146490-mRNA-1
chr1_4 three_prime_UTR 6190024 6190361 6190024 ID=Msa0146490-mRNA-1:three_prime_utr;Parent=Msa0146490-mRNA-1
Gene Sequence

>Msa0146490

ATGGAAACTGTGGAAACACTTCACATGAATAAAGGAGCTGGCGAAACTAGCTATGCCATGAACTCTTTTGTCCAGAGGAAGATAATATCATTGACAAATCAAGCAACAAAGAAAGCTATTGTGGAAATTCTATGCTCAACAAAACGATGGCCAATAATGAAGATGGGAATTGCTGATTTAGGTTGTTCATCAGGACCTAATGCCCTAAGGGTAATTTCAGAAATAGTTGAAGCCATAAATGCAACCTCAATCATGTTGAATCGACCAGCACCAAAGGAACTAATGTTATATATGAATGACCTTTTCACCAATGACTTCAACAACATTTTTGCTTCTTTGTCATCTTTCTACAAAAAAATAGGGCAAGAAAAGGGAAATGATAATCATCATAATCACAATGGTTCTAATTGTTTTGTTTCCGCTGTACCAGGCACTTTTTATGGTAGACTCTTCCCAACTAAGTCCCTTCACTTTGTGCACTCTTCTTCTAGCCTCCATTGGCTTTCTCAGGCCCCTGGTGGTTTGGAGGATGAAAGAGGAAAAGGGTTGAACAAAGGAAAACTGTACATATCAAAGAGCAGTCCCAATTGTGTGCTAAAAGCTTATTCACAACAATTCCAAAATGACTTTTTACAGTTTCTTGAGTCACGTTCTCAAGAAATGGTGCATGGGGGACAAATGGTCCTTTCTTTTATGGGCAGGGAATCAATGGACCCAACGTCACCCAACTGTTGCTATCAATGGGAACTTTTAGCACAGTCCCTTATGACCATGGTTTCTATGGGTCTAGTTGAAGAAGAAAAGGTGGACTCTTTCAACGCACCTTACTATGCACCGTGTTTTGAAGAATTAAAAATGGAGATTGAAAAAGAAGGGTCATTCATGGTGAATTCCCATGAAGCTTATGAAATTGATTGGGATGATGGGTTAGAATTGCAAAGTGATGATAAGATGATAAGTGGAGAACGAGTTGCAAAGACCATAAGGGCTGTGGTTGAATCTATGCTAGAATATCATTTTGGGAGTCATATAATGGATGAGTTGTTTCAAAGGTTTGCCAAACTTGTGGAGGATCATTTGTCAAAAACTAGGACCAAATACATCAATTTGGTCATTTCTCTTGTCAAGCGACAATGA

Protein sequence

>Msa0146490

METVETLHMNKGAGETSYAMNSFVQRKIISLTNQATKKAIVEILCSTKRWPIMKMGIADLGCSSGPNALRVISEIVEAINATSIMLNRPAPKELMLYMNDLFTNDFNNIFASLSSFYKKIGQEKGNDNHHNHNGSNCFVSAVPGTFYGRLFPTKSLHFVHSSSSLHWLSQAPGGLEDERGKGLNKGKLYISKSSPNCVLKAYSQQFQNDFLQFLESRSQEMVHGGQMVLSFMGRESMDPTSPNCCYQWELLAQSLMTMVSMGLVEEEKVDSFNAPYYAPCFEELKMEIEKEGSFMVNSHEAYEIDWDDGLELQSDDKMISGERVAKTIRAVVESMLEYHFGSHIMDELFQRFAKLVEDHLSKTRTKYINLVISLVKRQ*