AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025090 MtrunA17_Chr1g0179621 97.198 464 13 0 1 464 1 464 0.0 905
Msa0025090 MtrunA17_Chr7g0265481 74.194 465 115 3 1 464 1 461 0.0 621
Msa0025090 MtrunA17_Chr3g0139541 51.147 436 198 6 31 463 44 467 1.35e-130 386
Msa0025090 MtrunA17_Chr8g0373471 48.276 435 216 3 29 462 39 465 6.50e-123 366
Msa0025090 MtrunA17_Chr5g0403901 51.566 415 189 3 49 463 67 469 4.02e-116 349
Msa0025090 MtrunA17_Chr8g0380211 47.596 416 201 3 55 463 71 476 1.05e-103 317
Msa0025090 MtrunA17_Chr1g0157751 43.839 422 219 5 49 462 44 455 8.90e-103 314
Msa0025090 MtrunA17_Chr8g0380191 43.343 353 153 4 111 463 10 315 2.72e-76 241
Msa0025090 MtrunA17_Chr2g0280401 31.294 425 252 10 57 458 55 462 5.38e-40 149
Msa0025090 MtrunA17_Chr3g0139621 51.163 86 20 1 330 393 60 145 3.20e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025090 AT2G36630.1 70.282 461 125 4 5 464 9 458 0.0 583
Msa0025090 AT2G25737.1 52.844 422 177 5 50 463 66 473 6.66e-130 385
Msa0025090 AT2G25737.2 51.875 320 132 5 50 361 66 371 1.04e-86 270
Msa0025090 AT1G11540.2 27.876 452 301 7 18 458 9 446 7.61e-37 141
Msa0025090 AT1G11540.1 27.851 377 247 7 93 458 1 363 3.03e-35 135
Msa0025090 AT4G21250.1 30.645 434 247 8 26 442 33 429 1.02e-33 132
Msa0025090 AT1G61740.1 26.549 452 290 11 30 458 22 454 3.97e-33 130
Msa0025090 AT4G21260.1 27.400 427 235 11 24 442 14 373 5.42e-25 106

Find 114 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGGAGGTGGATTTATTT+TGG 0.132041 1_1:+48096223 Msa0025090:CDS
CCTATGCTTAATCTTCTTCT+TGG 0.184547 1_1:+48094253 Msa0025090:CDS
CCATGAGTTCATGGGATTCT+TGG 0.257074 1_1:+48097263 Msa0025090:CDS
GCTACTTTGGTTAATTCTAA+TGG 0.257433 1_1:+48095299 Msa0025090:CDS
GTTCTGGAACAGATAGAATT+TGG 0.259719 1_1:+48094032 Msa0025090:CDS
ATGCCTCACATATGTATTCT+AGG 0.262467 1_1:-48096121 None:intergenic
TTACCTTGATGATTTGAATA+AGG 0.268202 1_1:-48095643 None:intergenic
GTTGGAGGCTTACTTGGTTC+TGG 0.271593 1_1:+48096206 Msa0025090:CDS
TTCTCTGTTTCAACCTTAGA+TGG 0.285945 1_1:+48095579 Msa0025090:CDS
AGAAAATTAGTTGCATTTCT+TGG 0.286067 1_1:+48097045 Msa0025090:CDS
TTGGGTGCTCTTCGGCTTGC+AGG 0.288226 1_1:+48095781 Msa0025090:CDS
AGAAAGAGCAGCAGCAGATT+TGG 0.288931 1_1:-48094284 None:intergenic
AACTCTAACCGTTATGGTTC+TGG 0.290533 1_1:+48094016 Msa0025090:CDS
CTAAAATCCTCTTCCATCTA+AGG 0.311247 1_1:-48095592 None:intergenic
GGGCCTCTTCTCCTTGAGAT+AGG 0.312567 1_1:+48096245 Msa0025090:CDS
AGGACAGTGATAAGCCAAAA+AGG 0.314523 1_1:-48094867 None:intergenic
CCTCATCACAGTGTCTGTTT+TGG 0.316799 1_1:+48096996 Msa0025090:CDS
ATTTAGTTGGAAACTTGTTT+TGG 0.323990 1_1:+48094159 Msa0025090:CDS
CATGAGTTCATGGGATTCTT+GGG 0.327579 1_1:+48097264 Msa0025090:CDS
CTCATTATCATTCTCTTCAT+AGG 0.331159 1_1:+48094888 Msa0025090:CDS
GCCAAATCATAGTCTAATAT+TGG 0.339930 1_1:-48094780 None:intergenic
GCCAATATTAGACTATGATT+TGG 0.343903 1_1:+48094779 Msa0025090:CDS
AAGATTGCTTTCAGTATAGT+TGG 0.344726 1_1:+48097725 Msa0025090:three_prime_UTR
GGCTTACTTGGTTCTGGAGG+TGG 0.346407 1_1:+48096212 Msa0025090:CDS
TGCAGGAATTGGAATTTAGT+TGG 0.363273 1_1:+48094146 Msa0025090:intron
GGAATTGTTGGAGGCTTACT+TGG 0.374041 1_1:+48096200 Msa0025090:CDS
GACAAATATTAGTAAGTTAG+TGG 0.376098 1_1:+48097420 Msa0025090:three_prime_UTR
TTTGTGCAGGAACTTCTTTA+AGG 0.376797 1_1:+48095002 Msa0025090:intron
GAAAATTAGTTGCATTTCTT+GGG 0.377774 1_1:+48097046 Msa0025090:CDS
AAGAGGTTCCCTATGCCTTA+TGG 0.397338 1_1:+48096857 Msa0025090:CDS
TAATTAATTTAGAGTAAAGT+AGG 0.398409 1_1:+48097300 Msa0025090:exon
TTTCAGCCAATGCTTATGCT+TGG 0.402032 1_1:+48094810 Msa0025090:CDS
AACTGCTAAGCAAGCTACTT+TGG 0.413957 1_1:+48095286 Msa0025090:CDS
TTCAGCCAATGCTTATGCTT+GGG 0.426089 1_1:+48094811 Msa0025090:CDS
AGGCCTGCAGTGTATGGTAT+TGG 0.427218 1_1:+48095762 Msa0025090:CDS
TTATATCTACCTAGCTACTT+GGG 0.428075 1_1:+48097491 Msa0025090:three_prime_UTR
TAAAGAAAAGAAGTCAACTA+TGG 0.432207 1_1:+48095470 Msa0025090:CDS
GTCATTGTATTCATCCTCTC+TGG 0.433319 1_1:+48097078 Msa0025090:CDS
GATACACAACCATGAGTTCA+TGG 0.435806 1_1:+48097254 Msa0025090:CDS
TTTATATCTACCTAGCTACT+TGG 0.440934 1_1:+48097490 Msa0025090:three_prime_UTR
TGTGCAATGAGTGGTATTGT+AGG 0.441307 1_1:+48096176 Msa0025090:CDS
GTATGGTATTGGGTGCTCTT+CGG 0.446576 1_1:+48095773 Msa0025090:CDS
GTTGGAGGTGTTGGTGGTGG+TGG 0.450898 1_1:+48094220 Msa0025090:CDS
TCATCAAACTCTAACCGTTA+TGG 0.454959 1_1:+48094010 Msa0025090:CDS
GGGCATCAGCATCATCAGTT+TGG 0.457173 1_1:+48094721 Msa0025090:CDS
ACCGTTGGAGGTGTTGGTGG+TGG 0.462256 1_1:+48094217 Msa0025090:CDS
CCTCCTTATTCAAATCATCA+AGG 0.464837 1_1:+48095640 Msa0025090:CDS
AGCAAACAAAAGGAAAATCA+AGG 0.469348 1_1:+48097327 Msa0025090:three_prime_UTR
GTTTCAACCTTAGATGGAAG+AGG 0.471805 1_1:+48095585 Msa0025090:CDS
CGCAGAGAGAGTAGCAAGAC+AGG 0.482761 1_1:-48093936 None:intergenic
CACAGAATGAGGATGGGCAC+AGG 0.484366 1_1:+48096095 Msa0025090:CDS
AGTAGGAAATAGCAAACAAA+AGG 0.486129 1_1:+48097317 Msa0025090:three_prime_UTR
GGCCTGCAGTGTATGGTATT+GGG 0.487342 1_1:+48095763 Msa0025090:CDS
GGTATTGTAGGTGGAATTGT+TGG 0.495520 1_1:+48096188 Msa0025090:CDS
GTGTTTGGTTTATGCAGTGA+TGG 0.503575 1_1:-48093815 None:intergenic
AATCAAGGGTTCATAGATGT+TGG 0.512920 1_1:+48097342 Msa0025090:three_prime_UTR
TTTGCCAGTGCTCTCACCAT+GGG 0.516548 1_1:+48097108 Msa0025090:CDS
GGATCAGCATGTGGAACCGT+TGG 0.520850 1_1:+48094202 Msa0025090:CDS
ATTGTAGGTGGAATTGTTGG+AGG 0.521718 1_1:+48096191 Msa0025090:CDS
TCTTTAAGGTCATTCTTCAA+AGG 0.527965 1_1:+48095016 Msa0025090:CDS
CACTCATTGCACAAAATGCA+AGG 0.529460 1_1:-48096166 None:intergenic
CAAAGATCACAGAATGAGGA+TGG 0.531696 1_1:+48096088 Msa0025090:CDS
CATGGAATATCTATATCTCT+AGG 0.532208 1_1:+48097383 Msa0025090:three_prime_UTR
TATGTGAGGCATCAATAGAA+TGG 0.532905 1_1:+48096132 Msa0025090:CDS
ATGTAGAGGCCTGCAGTGTA+TGG 0.533143 1_1:+48095756 Msa0025090:CDS
TGAGATAGGTGTCATCCCTC+AGG 0.534173 1_1:+48096259 Msa0025090:CDS
TCTAATGGAGAATTTAAAGC+AGG 0.535837 1_1:+48095314 Msa0025090:CDS
CCTTGATGATTTGAATAAGG+AGG 0.539252 1_1:-48095640 None:intergenic
GTAGCAATCAAAATCAAAAG+AGG 0.541239 1_1:-48093760 None:intergenic
TATATCTACCTAGCTACTTG+GGG 0.545376 1_1:+48097492 Msa0025090:three_prime_UTR
TTGAATTCTACATTCTCAAG+AGG 0.545752 1_1:+48096840 Msa0025090:CDS
TGAAGATTACCATAAGGCAT+AGG 0.546602 1_1:-48096866 None:intergenic
TCAAAGGAATTGAAATGTGG+AGG 0.547426 1_1:+48095032 Msa0025090:CDS
GGAACCGTTGGAGGTGTTGG+TGG 0.548385 1_1:+48094214 Msa0025090:CDS
ACCACCACCAACACCTCCAA+CGG 0.548386 1_1:-48094218 None:intergenic
CCAAGAATCCCATGAACTCA+TGG 0.548829 1_1:-48097263 None:intergenic
TGTGGAACCGTTGGAGGTGT+TGG 0.549464 1_1:+48094211 Msa0025090:CDS
ATTACCCATGGTGAGAGCAC+TGG 0.549613 1_1:-48097112 None:intergenic
GGAGGCTTACTTGGTTCTGG+AGG 0.552125 1_1:+48096209 Msa0025090:CDS
TATCTGTTCCAGAACCATAA+CGG 0.554023 1_1:-48094024 None:intergenic
AATTAGTTGCATTTCTTGGG+AGG 0.558277 1_1:+48097049 Msa0025090:CDS
GAAGATTACCATAAGGCATA+GGG 0.560541 1_1:-48096865 None:intergenic
ATTAGTTGCATTTCTTGGGA+GGG 0.561323 1_1:+48097050 Msa0025090:CDS
TGGCTATTTATTTGTTGCAG+AGG 0.563811 1_1:-48093795 None:intergenic
ACACATATCATATTGTGTTG+TGG 0.570474 1_1:+48097617 Msa0025090:three_prime_UTR
CTTATGTGTGAAAATAATTG+TGG 0.572003 1_1:+48097557 Msa0025090:three_prime_UTR
CTATGAAGAGAATGATAATG+AGG 0.573022 1_1:-48094887 None:intergenic
TGTACAAAGATCACAGAATG+AGG 0.585072 1_1:+48096084 Msa0025090:CDS
CTTATGCTTGGGATAACTGT+TGG 0.586804 1_1:+48094822 Msa0025090:CDS
GTTTGATGATGATGATAACA+AGG 0.587310 1_1:-48093996 None:intergenic
GAGATATAGATATTCCATGT+TGG 0.591536 1_1:-48097379 None:intergenic
TGGTTTGCAGACTGATGTAG+AGG 0.594763 1_1:+48095742 Msa0025090:intron
GTTATCCCAAGCATAAGCAT+TGG 0.599534 1_1:-48094816 None:intergenic
GATGATAACAAGGAGAATGA+TGG 0.600061 1_1:-48093986 None:intergenic
TCAGCATGTGGAACCGTTGG+AGG 0.603957 1_1:+48094205 Msa0025090:CDS
AGTGGCACATCCAACAAAAG+AGG 0.604209 1_1:+48094755 Msa0025090:CDS
CAAAGGAATTGAAATGTGGA+GGG 0.605096 1_1:+48095033 Msa0025090:CDS
TCTTCAAAGGAATTGAAATG+TGG 0.607269 1_1:+48095029 Msa0025090:CDS
GCAAACAAAAGGAAAATCAA+GGG 0.610916 1_1:+48097328 Msa0025090:three_prime_UTR
ACACCTATCTCAAGGAGAAG+AGG 0.611353 1_1:-48096248 None:intergenic
CCAAGAAGAAGATTAAGCAT+AGG 0.611625 1_1:-48094253 None:intergenic
ATACACAACCATGAGTTCAT+GGG 0.614070 1_1:+48097255 Msa0025090:CDS
CACCCAATACCATACACTGC+AGG 0.618863 1_1:-48095765 None:intergenic
ACAGAATGAGGATGGGCACA+GGG 0.625351 1_1:+48096096 Msa0025090:CDS
AGTTTGGTATAATTTGAGAG+TGG 0.626700 1_1:+48094737 Msa0025090:CDS
GAGGGATGACACCTATCTCA+AGG 0.628407 1_1:-48096256 None:intergenic
GAGGGTAGAGACTCTTCTCA+AGG 0.635367 1_1:+48095051 Msa0025090:CDS
ATATCTACCTAGCTACTTGG+GGG 0.638368 1_1:+48097493 Msa0025090:three_prime_UTR
ACTCATTGCACAAAATGCAA+GGG 0.642562 1_1:-48096165 None:intergenic
AAAGATCACAGAATGAGGAT+GGG 0.663631 1_1:+48096089 Msa0025090:CDS
GCAATGAGTGGTATTGTAGG+TGG 0.666887 1_1:+48096179 Msa0025090:CDS
CCAAAACAGACACTGTGATG+AGG 0.668862 1_1:-48096996 None:intergenic
TTAATGTCTGTTGACCAACA+TGG 0.683651 1_1:+48097365 Msa0025090:three_prime_UTR
GAGCCTAGAATACATATGTG+AGG 0.685813 1_1:+48096118 Msa0025090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGTAAGAAAAATTTAC+AGG - chr1_1:48094058-48094077 None:intergenic 15.0%
!!! TTTTTTTAATGTGTTATTGA+AGG + chr1_1:48094077-48094096 Msa0025090:intron 15.0%
!! TGTATATATGTTTATGTTTA+TGG + chr1_1:48094106-48094125 Msa0025090:intron 15.0%
!!! TTTTTTCTATTTTGTTATTG+CGG + chr1_1:48094674-48094693 Msa0025090:intron 15.0%
!!! TTTTATTTTTATTTTTGTGC+AGG + chr1_1:48094989-48095008 Msa0025090:intron 15.0%
!! AAAACAAAAATTAGAGAAAA+AGG - chr1_1:48095250-48095269 None:intergenic 15.0%
!! TAAAATAAACAGTTTATTGT+TGG + chr1_1:48095722-48095741 Msa0025090:intron 15.0%
!!! ATTTATAGAGTTTTAAGAAA+AGG - chr1_1:48095967-48095986 None:intergenic 15.0%
!!! ATGTTATACATTTTTATTTC+AGG + chr1_1:48097201-48097220 Msa0025090:intron 15.0%
!!! TAATTAATTTAGAGTAAAGT+AGG + chr1_1:48097300-48097319 Msa0025090:exon 15.0%
!! TATAAAAAAAGTTAAGCATA+CGG - chr1_1:48097476-48097495 None:intergenic 15.0%
!!! ATAAACTATGAAGTTTTTTG+TGG - chr1_1:48093903-48093922 None:intergenic 20.0%
!!! TATCAATGTTTCTAATTAGT+AGG + chr1_1:48094471-48094490 Msa0025090:intron 20.0%
!! AGAATAAACTTCAATATCAA+CGG - chr1_1:48094599-48094618 None:intergenic 20.0%
!!! ATTGATTTTAGGTATGATAA+TGG + chr1_1:48094698-48094717 Msa0025090:intron 20.0%
!!! TTGATTTTAGGTATGATAAT+GGG + chr1_1:48094699-48094718 Msa0025090:intron 20.0%
!!! ACTGTTTTATTCATTTTTCT+AGG + chr1_1:48094958-48094977 Msa0025090:intron 20.0%
!!! AATCATTAACTCAAGTTTTT+AGG + chr1_1:48095209-48095228 Msa0025090:intron 20.0%
!!! GATGCAACTTTTTTTTTTTT+TGG + chr1_1:48095863-48095882 Msa0025090:intron 20.0%
!! AAATAAATTCATAAGGCATA+GGG - chr1_1:48096961-48096980 None:intergenic 20.0%
!! TGCAAACAAATAAATTCATA+AGG - chr1_1:48096968-48096987 None:intergenic 20.0%
!!! ATTTTTATTTCAGGTATTGT+TGG + chr1_1:48097210-48097229 Msa0025090:intron 20.0%
!!! TAGTCATTTTACTAATTACT+TGG - chr1_1:48097528-48097547 None:intergenic 20.0%
!!! AATTATTTTCACACATAAGA+AGG - chr1_1:48097556-48097575 None:intergenic 20.0%
!!! ACATTTTTTGAGAATATCAA+AGG - chr1_1:48097771-48097790 None:intergenic 20.0%
!!! ATTTAGTTGGAAACTTGTTT+TGG + chr1_1:48094159-48094178 Msa0025090:CDS 25.0%
! TTTATAGTAGAAATCGAACT+CGG + chr1_1:48094327-48094346 Msa0025090:intron 25.0%
! TAATTAGTAGGAATCAAACT+CGG + chr1_1:48094483-48094502 Msa0025090:intron 25.0%
!!! TGATTTTAGGTATGATAATG+GGG + chr1_1:48094700-48094719 Msa0025090:intron 25.0%
! TATACAAATTTCCACAATAG+TGG + chr1_1:48095337-48095356 Msa0025090:intron 25.0%
!!! TAGTTGACTTCTTTTCTTTA+GGG - chr1_1:48095470-48095489 None:intergenic 25.0%
!!! ATAGTTGACTTCTTTTCTTT+AGG - chr1_1:48095471-48095490 None:intergenic 25.0%
! TAAAGAAAAGAAGTCAACTA+TGG + chr1_1:48095470-48095489 Msa0025090:CDS 25.0%
!! TTACCTTGATGATTTGAATA+AGG - chr1_1:48095646-48095665 None:intergenic 25.0%
! ACTGCAATTCATAATATGTT+TGG - chr1_1:48095828-48095847 None:intergenic 25.0%
! AAAACTCTATAAATGCAATG+TGG + chr1_1:48095973-48095992 Msa0025090:intron 25.0%
! CAATTGACAATTGAAAATTC+TGG - chr1_1:48096535-48096554 None:intergenic 25.0%
! ATGCTGATAATTTAAATTGC+AGG + chr1_1:48096763-48096782 Msa0025090:intron 25.0%
!! GGATCCATTTTCAATTTAAT+TGG + chr1_1:48096910-48096929 Msa0025090:intron 25.0%
! CAAATAAATTCATAAGGCAT+AGG - chr1_1:48096962-48096981 None:intergenic 25.0%
! AGAAAATTAGTTGCATTTCT+TGG + chr1_1:48097045-48097064 Msa0025090:CDS 25.0%
! GAAAATTAGTTGCATTTCTT+GGG + chr1_1:48097046-48097065 Msa0025090:CDS 25.0%
! TCATATAAATCAGCAAATTG+AGG - chr1_1:48097150-48097169 None:intergenic 25.0%
! GACAAATATTAGTAAGTTAG+TGG + chr1_1:48097420-48097439 Msa0025090:three_prime_UTR 25.0%
!!! TAGTTTTCAGGATTGAAATT+TGG + chr1_1:48097449-48097468 Msa0025090:three_prime_UTR 25.0%
! CTTATGTGTGAAAATAATTG+TGG + chr1_1:48097557-48097576 Msa0025090:three_prime_UTR 25.0%
!!! TTGTTTTTGCTTTCTTTTGT+TGG + chr1_1:48097647-48097666 Msa0025090:three_prime_UTR 25.0%
GTAGCAATCAAAATCAAAAG+AGG - chr1_1:48093763-48093782 None:intergenic 30.0%
!!! ATGATGGTTTTTGGTTGTTA+TGG - chr1_1:48093973-48093992 None:intergenic 30.0%
!! GTTTGATGATGATGATAACA+AGG - chr1_1:48093999-48094018 None:intergenic 30.0%
TTTGTGTGTTTATTATGTGC+AGG + chr1_1:48094129-48094148 Msa0025090:intron 30.0%
TGTTTATTATGTGCAGGAAT+TGG + chr1_1:48094135-48094154 Msa0025090:intron 30.0%
!!! GCTACAGTTATTGGTTTTTT+TGG + chr1_1:48094181-48094200 Msa0025090:CDS 30.0%
TATCAGTGTGACTAATTAGT+AGG + chr1_1:48094393-48094412 Msa0025090:intron 30.0%
TAATTAGTAGGAATCGAACT+CGG + chr1_1:48094405-48094424 Msa0025090:intron 30.0%
AGAAACATTGATACCATGAA+AGG - chr1_1:48094464-48094483 None:intergenic 30.0%
TCTAGGTTTACAATACTAGA+TGG + chr1_1:48094509-48094528 Msa0025090:intron 30.0%
!! GTTATTGCGGAATTGATTTT+AGG + chr1_1:48094687-48094706 Msa0025090:intron 30.0%
!!! GATTTTAGGTATGATAATGG+GGG + chr1_1:48094701-48094720 Msa0025090:intron 30.0%
AGTTTGGTATAATTTGAGAG+TGG + chr1_1:48094737-48094756 Msa0025090:CDS 30.0%
GCCAATATTAGACTATGATT+TGG + chr1_1:48094779-48094798 Msa0025090:CDS 30.0%
GCCAAATCATAGTCTAATAT+TGG - chr1_1:48094783-48094802 None:intergenic 30.0%
! CTATGAAGAGAATGATAATG+AGG - chr1_1:48094890-48094909 None:intergenic 30.0%
CTCATTATCATTCTCTTCAT+AGG + chr1_1:48094888-48094907 Msa0025090:CDS 30.0%
!! TCTTTAAGGTCATTCTTCAA+AGG + chr1_1:48095016-48095035 Msa0025090:CDS 30.0%
TCTTCAAAGGAATTGAAATG+TGG + chr1_1:48095029-48095048 Msa0025090:CDS 30.0%
TCTTGACTAGAATTGACTAA+TGG + chr1_1:48095082-48095101 Msa0025090:intron 30.0%
! GCTACTTTGGTTAATTCTAA+TGG + chr1_1:48095299-48095318 Msa0025090:CDS 30.0%
! TCTAATGGAGAATTTAAAGC+AGG + chr1_1:48095314-48095333 Msa0025090:CDS 30.0%
AGATAAGATAACCACTATTG+TGG - chr1_1:48095351-48095370 None:intergenic 30.0%
!! TTCTTTTCTTTAGGGATCAA+TGG - chr1_1:48095462-48095481 None:intergenic 30.0%
!! AAACAGAGAATTTGCTGAAA+GGG - chr1_1:48095569-48095588 None:intergenic 30.0%
TAACTAAAGTTGCATCTGAT+CGG - chr1_1:48095893-48095912 None:intergenic 30.0%
TTGGAAACTGAAACAGAAAA+TGG - chr1_1:48096028-48096047 None:intergenic 30.0%
! TCAGTTTCCAATTGCATTTT+TGG + chr1_1:48096037-48096056 Msa0025090:intron 30.0%
GGTAAGCAAAATTGAAAAGA+GGG - chr1_1:48096298-48096317 None:intergenic 30.0%
TGGTAAGCAAAATTGAAAAG+AGG - chr1_1:48096299-48096318 None:intergenic 30.0%
TCTGGTCAACACAATTAAAA+GGG - chr1_1:48096517-48096536 None:intergenic 30.0%
TTCTGGTCAACACAATTAAA+AGG - chr1_1:48096518-48096537 None:intergenic 30.0%
!!! AGTTTTTTATTTGTCACCAC+CGG - chr1_1:48096731-48096750 None:intergenic 30.0%
TTGAATTCTACATTCTCAAG+AGG + chr1_1:48096840-48096859 Msa0025090:CDS 30.0%
!! AGTTGATGAAGATTACCATA+AGG - chr1_1:48096875-48096894 None:intergenic 30.0%
CTGGCCAATTAAATTGAAAA+TGG - chr1_1:48096917-48096936 None:intergenic 30.0%
CCAGTGTTATAATATTGTAC+TGG - chr1_1:48096936-48096955 None:intergenic 30.0%
CCAGTACAATATTATAACAC+TGG + chr1_1:48096933-48096952 Msa0025090:intron 30.0%
ATAAATCAGCAAATTGAGGT+AGG - chr1_1:48097146-48097165 None:intergenic 30.0%
AGTAGGAAATAGCAAACAAA+AGG + chr1_1:48097317-48097336 Msa0025090:three_prime_UTR 30.0%
AGCAAACAAAAGGAAAATCA+AGG + chr1_1:48097327-48097346 Msa0025090:three_prime_UTR 30.0%
GCAAACAAAAGGAAAATCAA+GGG + chr1_1:48097328-48097347 Msa0025090:three_prime_UTR 30.0%
GAGATATAGATATTCCATGT+TGG - chr1_1:48097382-48097401 None:intergenic 30.0%
CATGGAATATCTATATCTCT+AGG + chr1_1:48097383-48097402 Msa0025090:three_prime_UTR 30.0%
TTTATATCTACCTAGCTACT+TGG + chr1_1:48097490-48097509 Msa0025090:three_prime_UTR 30.0%
TTATATCTACCTAGCTACTT+GGG + chr1_1:48097491-48097510 Msa0025090:three_prime_UTR 30.0%
ACACATATCATATTGTGTTG+TGG + chr1_1:48097617-48097636 Msa0025090:three_prime_UTR 30.0%
AAGATTGCTTTCAGTATAGT+TGG + chr1_1:48097725-48097744 Msa0025090:three_prime_UTR 30.0%
! TGGCTATTTATTTGTTGCAG+AGG - chr1_1:48093798-48093817 None:intergenic 35.0%
!!! GTTTTTTGTGGACATTGTCA+TGG - chr1_1:48093891-48093910 None:intergenic 35.0%
! ACAAGGAGAATGATGGTTTT+TGG - chr1_1:48093982-48094001 None:intergenic 35.0%
GATGATAACAAGGAGAATGA+TGG - chr1_1:48093989-48094008 None:intergenic 35.0%
TCATCAAACTCTAACCGTTA+TGG + chr1_1:48094010-48094029 Msa0025090:CDS 35.0%
TATCTGTTCCAGAACCATAA+CGG - chr1_1:48094027-48094046 None:intergenic 35.0%
!! GTTCTGGAACAGATAGAATT+TGG + chr1_1:48094032-48094051 Msa0025090:CDS 35.0%
TGCAGGAATTGGAATTTAGT+TGG + chr1_1:48094146-48094165 Msa0025090:intron 35.0%
!!! CTTGTTTTGGCTACAGTTAT+TGG + chr1_1:48094172-48094191 Msa0025090:CDS 35.0%
CCAAGAAGAAGATTAAGCAT+AGG - chr1_1:48094256-48094275 None:intergenic 35.0%
CCTATGCTTAATCTTCTTCT+TGG + chr1_1:48094253-48094272 Msa0025090:CDS 35.0%
AAATCGAACTCGGTATTTCA+GGG + chr1_1:48094337-48094356 Msa0025090:intron 35.0%
AATTAGTCACACTGATACCA+TGG - chr1_1:48094390-48094409 None:intergenic 35.0%
TGTGTGAATGTTGTAAATCC+TGG - chr1_1:48094435-48094454 None:intergenic 35.0%
CTTCTAATCAGAATCGAACT+CGG + chr1_1:48094540-48094559 Msa0025090:intron 35.0%
! AATATTGGCACCTCTTTTGT+TGG - chr1_1:48094768-48094787 None:intergenic 35.0%
!!! TCAGTGTTGTTTTCCCTTTT+TGG + chr1_1:48094853-48094872 Msa0025090:CDS 35.0%
TTTGTGCAGGAACTTCTTTA+AGG + chr1_1:48095002-48095021 Msa0025090:intron 35.0%
TCAAAGGAATTGAAATGTGG+AGG + chr1_1:48095032-48095051 Msa0025090:CDS 35.0%
CAAAGGAATTGAAATGTGGA+GGG + chr1_1:48095033-48095052 Msa0025090:CDS 35.0%
!! GAAACAGAGAATTTGCTGAA+AGG - chr1_1:48095570-48095589 None:intergenic 35.0%
TTCTCTGTTTCAACCTTAGA+TGG + chr1_1:48095579-48095598 Msa0025090:CDS 35.0%
CTAAAATCCTCTTCCATCTA+AGG - chr1_1:48095595-48095614 None:intergenic 35.0%
!! GAAGAGGATTTTAGTGCTTT+TGG + chr1_1:48095601-48095620 Msa0025090:CDS 35.0%
! CCTTGATGATTTGAATAAGG+AGG - chr1_1:48095643-48095662 None:intergenic 35.0%
CCTCCTTATTCAAATCATCA+AGG + chr1_1:48095640-48095659 Msa0025090:CDS 35.0%
CATCAAAAACCTTGATGTGA+CGG + chr1_1:48095922-48095941 Msa0025090:intron 35.0%
AAAGGTTTATGACCACAGTT+TGG - chr1_1:48095949-48095968 None:intergenic 35.0%
ACAGAAAATGGACATGTGTA+TGG - chr1_1:48096016-48096035 None:intergenic 35.0%
CCAAACACCAAAAATGCAAT+TGG - chr1_1:48096047-48096066 None:intergenic 35.0%
!!! CCAATTGCATTTTTGGTGTT+TGG + chr1_1:48096044-48096063 Msa0025090:CDS 35.0%
TGTACAAAGATCACAGAATG+AGG + chr1_1:48096084-48096103 Msa0025090:CDS 35.0%
AAAGATCACAGAATGAGGAT+GGG + chr1_1:48096089-48096108 Msa0025090:CDS 35.0%
ATGCCTCACATATGTATTCT+AGG - chr1_1:48096124-48096143 None:intergenic 35.0%
! TATGTGAGGCATCAATAGAA+TGG + chr1_1:48096132-48096151 Msa0025090:CDS 35.0%
ACTCATTGCACAAAATGCAA+GGG - chr1_1:48096168-48096187 None:intergenic 35.0%
!! TTCTGGAGGTGGATTTATTT+TGG + chr1_1:48096223-48096242 Msa0025090:CDS 35.0%
!! TCTGGAGGTGGATTTATTTT+GGG + chr1_1:48096224-48096243 Msa0025090:CDS 35.0%
TGCTTACCAATGTTGTTGAT+CGG + chr1_1:48096310-48096329 Msa0025090:intron 35.0%
CGATTTAGTGTGTAGTGTAA+TGG - chr1_1:48096364-48096383 None:intergenic 35.0%
! CGATTCACAATTGATAACAC+TGG - chr1_1:48096411-48096430 None:intergenic 35.0%
ATCACATTGTAGCTATAGTG+TGG - chr1_1:48096607-48096626 None:intergenic 35.0%
GAAGATTACCATAAGGCATA+GGG - chr1_1:48096868-48096887 None:intergenic 35.0%
TGAAGATTACCATAAGGCAT+AGG - chr1_1:48096869-48096888 None:intergenic 35.0%
TCAACTCTTCAAAGCTTAAC+TGG + chr1_1:48096889-48096908 Msa0025090:intron 35.0%
AATTAGTTGCATTTCTTGGG+AGG + chr1_1:48097049-48097068 Msa0025090:CDS 35.0%
ATTAGTTGCATTTCTTGGGA+GGG + chr1_1:48097050-48097069 Msa0025090:CDS 35.0%
TAGGTTTCCATTATTACCCA+TGG - chr1_1:48097127-48097146 None:intergenic 35.0%
ATACACAACCATGAGTTCAT+GGG + chr1_1:48097255-48097274 Msa0025090:CDS 35.0%
AATCAAGGGTTCATAGATGT+TGG + chr1_1:48097342-48097361 Msa0025090:three_prime_UTR 35.0%
TTAATGTCTGTTGACCAACA+TGG + chr1_1:48097365-48097384 Msa0025090:three_prime_UTR 35.0%
!!! TAGTGGTTACGTTAGTTTTC+AGG + chr1_1:48097437-48097456 Msa0025090:three_prime_UTR 35.0%
TATATCTACCTAGCTACTTG+GGG + chr1_1:48097492-48097511 Msa0025090:three_prime_UTR 35.0%
!! TTGCTTTCTTTTGTTGGTTG+TGG + chr1_1:48097653-48097672 Msa0025090:three_prime_UTR 35.0%
! GTGTTTGGTTTATGCAGTGA+TGG - chr1_1:48093818-48093837 None:intergenic 40.0%
AACTCTAACCGTTATGGTTC+TGG + chr1_1:48094016-48094035 Msa0025090:CDS 40.0%
!!! GGTTTTTTTGGATCAGCATG+TGG + chr1_1:48094193-48094212 Msa0025090:CDS 40.0%
GAAATCGAACTCGGTATTTC+AGG + chr1_1:48094336-48094355 Msa0025090:intron 40.0%
ACACTGATACCATGGAGTAT+CGG - chr1_1:48094382-48094401 None:intergenic 40.0%
TCACACAAACTGACCTTTCA+TGG + chr1_1:48094448-48094467 Msa0025090:intron 40.0%
GGAATCAAACTCGGTATTCT+AGG + chr1_1:48094492-48094511 Msa0025090:intron 40.0%
TTTCAGCCAATGCTTATGCT+TGG + chr1_1:48094810-48094829 Msa0025090:CDS 40.0%
TTCAGCCAATGCTTATGCTT+GGG + chr1_1:48094811-48094830 Msa0025090:CDS 40.0%
GTTATCCCAAGCATAAGCAT+TGG - chr1_1:48094819-48094838 None:intergenic 40.0%
CTTATGCTTGGGATAACTGT+TGG + chr1_1:48094822-48094841 Msa0025090:CDS 40.0%
GGACAGTGATAAGCCAAAAA+GGG - chr1_1:48094869-48094888 None:intergenic 40.0%
AGGACAGTGATAAGCCAAAA+AGG - chr1_1:48094870-48094889 None:intergenic 40.0%
AACTGCTAAGCAAGCTACTT+TGG + chr1_1:48095286-48095305 Msa0025090:CDS 40.0%
GTTTCAACCTTAGATGGAAG+AGG + chr1_1:48095585-48095604 Msa0025090:CDS 40.0%
!! TTTTAGTGCTTTTGGCTGTG+TGG + chr1_1:48095609-48095628 Msa0025090:CDS 40.0%
ACAGAGCTCTTATAGTGAGA+GGG - chr1_1:48095673-48095692 None:intergenic 40.0%
AACAGAGCTCTTATAGTGAG+AGG - chr1_1:48095674-48095693 None:intergenic 40.0%
CAAAGATCACAGAATGAGGA+TGG + chr1_1:48096088-48096107 Msa0025090:CDS 40.0%
GAGCCTAGAATACATATGTG+AGG + chr1_1:48096118-48096137 Msa0025090:CDS 40.0%
CACTCATTGCACAAAATGCA+AGG - chr1_1:48096169-48096188 None:intergenic 40.0%
! CTTGCATTTTGTGCAATGAG+TGG + chr1_1:48096167-48096186 Msa0025090:CDS 40.0%
TGTGCAATGAGTGGTATTGT+AGG + chr1_1:48096176-48096195 Msa0025090:CDS 40.0%
GGTATTGTAGGTGGAATTGT+TGG + chr1_1:48096188-48096207 Msa0025090:CDS 40.0%
ATTGTAGGTGGAATTGTTGG+AGG + chr1_1:48096191-48096210 Msa0025090:CDS 40.0%
!!! CTGGAGGTGGATTTATTTTG+GGG + chr1_1:48096225-48096244 Msa0025090:CDS 40.0%
GGAACATATAGTGTACCTGA+GGG - chr1_1:48096277-48096296 None:intergenic 40.0%
TGCTATCCGATCAACAACAT+TGG - chr1_1:48096319-48096338 None:intergenic 40.0%
TGATCGGATAGCAACAATAG+TGG + chr1_1:48096326-48096345 Msa0025090:intron 40.0%
AACACTGGTCAACACAATTG+CGG - chr1_1:48096396-48096415 None:intergenic 40.0%
ACATTGTAGCTATAGTGTGG+CGG - chr1_1:48096604-48096623 None:intergenic 40.0%
CAGCTTCTATTTGACAACAC+CGG + chr1_1:48096709-48096728 Msa0025090:intron 40.0%
GTCATTGTATTCATCCTCTC+TGG + chr1_1:48097078-48097097 Msa0025090:CDS 40.0%
TGGCAAAAATAACACCAGAG+AGG - chr1_1:48097095-48097114 None:intergenic 40.0%
GATACACAACCATGAGTTCA+TGG + chr1_1:48097254-48097273 Msa0025090:CDS 40.0%
CATGAGTTCATGGGATTCTT+GGG + chr1_1:48097264-48097283 Msa0025090:CDS 40.0%
ATATCTACCTAGCTACTTGG+GGG + chr1_1:48097493-48097512 Msa0025090:three_prime_UTR 40.0%
ATAAATTCCCCCAAGTAGCT+AGG - chr1_1:48097503-48097522 None:intergenic 40.0%
!! CTTTTGTTGGTTGTGGAGTT+CGG + chr1_1:48097660-48097679 Msa0025090:three_prime_UTR 40.0%
AGAAAGAGCAGCAGCAGATT+TGG - chr1_1:48094287-48094306 None:intergenic 45.0%
AGAATCGAACTCGGTACTCT+AGG + chr1_1:48094549-48094568 Msa0025090:intron 45.0%
GAATCGAACTCGGTACTCTA+GGG + chr1_1:48094550-48094569 Msa0025090:intron 45.0%
AGTGGCACATCCAACAAAAG+AGG + chr1_1:48094755-48094774 Msa0025090:CDS 45.0%
CGACTAGAACTGCAAATCTC+AGG - chr1_1:48095425-48095444 None:intergenic 45.0%
! TGGTTTGCAGACTGATGTAG+AGG + chr1_1:48095742-48095761 Msa0025090:intron 45.0%
! GTATGGTATTGGGTGCTCTT+CGG + chr1_1:48095773-48095792 Msa0025090:CDS 45.0%
GCAATGAGTGGTATTGTAGG+TGG + chr1_1:48096179-48096198 Msa0025090:CDS 45.0%
GGAATTGTTGGAGGCTTACT+TGG + chr1_1:48096200-48096219 Msa0025090:CDS 45.0%
ACACCTATCTCAAGGAGAAG+AGG - chr1_1:48096251-48096270 None:intergenic 45.0%
GGGAACATATAGTGTACCTG+AGG - chr1_1:48096278-48096297 None:intergenic 45.0%
CTTCTATTTGACAACACCGG+TGG + chr1_1:48096712-48096731 Msa0025090:intron 45.0%
AAGAGGTTCCCTATGCCTTA+TGG + chr1_1:48096857-48096876 Msa0025090:CDS 45.0%
CCAAAACAGACACTGTGATG+AGG - chr1_1:48096999-48097018 None:intergenic 45.0%
! CCTCATCACAGTGTCTGTTT+TGG + chr1_1:48096996-48097015 Msa0025090:CDS 45.0%
!!! ATCACAGTGTCTGTTTTGGC+TGG + chr1_1:48097000-48097019 Msa0025090:CDS 45.0%
GCTCTCACCATGGGTAATAA+TGG + chr1_1:48097117-48097136 Msa0025090:intron 45.0%
CCAAGAATCCCATGAACTCA+TGG - chr1_1:48097266-48097285 None:intergenic 45.0%
CCATGAGTTCATGGGATTCT+TGG + chr1_1:48097263-48097282 Msa0025090:CDS 45.0%
GTTGTGCGTGTGTGTGTGTT+TGG - chr1_1:48093833-48093852 None:intergenic 50.0%
TCACACACACCGATACTCCA+TGG + chr1_1:48094370-48094389 Msa0025090:intron 50.0%
GGGCATCAGCATCATCAGTT+TGG + chr1_1:48094721-48094740 Msa0025090:CDS 50.0%
GAGGGTAGAGACTCTTCTCA+AGG + chr1_1:48095051-48095070 Msa0025090:CDS 50.0%
ATGTAGAGGCCTGCAGTGTA+TGG + chr1_1:48095756-48095775 Msa0025090:CDS 50.0%
AGGCCTGCAGTGTATGGTAT+TGG + chr1_1:48095762-48095781 Msa0025090:CDS 50.0%
GGCCTGCAGTGTATGGTATT+GGG + chr1_1:48095763-48095782 Msa0025090:CDS 50.0%
CACCCAATACCATACACTGC+AGG - chr1_1:48095768-48095787 None:intergenic 50.0%
CAGTTTGGACCGTCACATCA+AGG - chr1_1:48095934-48095953 None:intergenic 50.0%
TGATGTGACGGTCCAAACTG+TGG + chr1_1:48095934-48095953 Msa0025090:intron 50.0%
ACAGAATGAGGATGGGCACA+GGG + chr1_1:48096096-48096115 Msa0025090:CDS 50.0%
GTTGGAGGCTTACTTGGTTC+TGG + chr1_1:48096206-48096225 Msa0025090:CDS 50.0%
GAGGGATGACACCTATCTCA+AGG - chr1_1:48096259-48096278 None:intergenic 50.0%
! TGAGATAGGTGTCATCCCTC+AGG + chr1_1:48096259-48096278 Msa0025090:CDS 50.0%
!!! TGTCTGTTTTGGCTGGCTTC+TGG + chr1_1:48097007-48097026 Msa0025090:CDS 50.0%
!!! GTCTGTTTTGGCTGGCTTCT+GGG + chr1_1:48097008-48097027 Msa0025090:CDS 50.0%
!!! TCTGTTTTGGCTGGCTTCTG+GGG + chr1_1:48097009-48097028 Msa0025090:CDS 50.0%
! TTTTGCCAGTGCTCTCACCA+TGG + chr1_1:48097107-48097126 Msa0025090:CDS 50.0%
TTTGCCAGTGCTCTCACCAT+GGG + chr1_1:48097108-48097127 Msa0025090:CDS 50.0%
! ATTACCCATGGTGAGAGCAC+TGG - chr1_1:48097115-48097134 None:intergenic 50.0%
CGCAGAGAGAGTAGCAAGAC+AGG - chr1_1:48093939-48093958 None:intergenic 55.0%
GGATCAGCATGTGGAACCGT+TGG + chr1_1:48094202-48094221 Msa0025090:CDS 55.0%
TCAGCATGTGGAACCGTTGG+AGG + chr1_1:48094205-48094224 Msa0025090:CDS 55.0%
! TGTGGAACCGTTGGAGGTGT+TGG + chr1_1:48094211-48094230 Msa0025090:CDS 55.0%
ACCACCACCAACACCTCCAA+CGG - chr1_1:48094221-48094240 None:intergenic 55.0%
GGAATCGAACTCGGTACTCC+AGG + chr1_1:48094414-48094433 Msa0025090:intron 55.0%
CACAGAATGAGGATGGGCAC+AGG + chr1_1:48096095-48096114 Msa0025090:CDS 55.0%
!! GGAGGCTTACTTGGTTCTGG+AGG + chr1_1:48096209-48096228 Msa0025090:CDS 55.0%
!! GGCTTACTTGGTTCTGGAGG+TGG + chr1_1:48096212-48096231 Msa0025090:CDS 55.0%
GGGCCTCTTCTCCTTGAGAT+AGG + chr1_1:48096245-48096264 Msa0025090:CDS 55.0%
GCAATAGCGTCACAGCGCAA+TGG - chr1_1:48096682-48096701 None:intergenic 55.0%
!! GGAACCGTTGGAGGTGTTGG+TGG + chr1_1:48094214-48094233 Msa0025090:CDS 60.0%
!! ACCGTTGGAGGTGTTGGTGG+TGG + chr1_1:48094217-48094236 Msa0025090:CDS 60.0%
!! GTTGGAGGTGTTGGTGGTGG+TGG + chr1_1:48094220-48094239 Msa0025090:CDS 60.0%
! TTGGGTGCTCTTCGGCTTGC+AGG + chr1_1:48095781-48095800 Msa0025090:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 48093760 48097793 48093760 ID=Msa0025090;Name=Msa0025090
chr1_1 mRNA 48093760 48097793 48093760 ID=Msa0025090-mRNA-1;Parent=Msa0025090;Name=Msa0025090-mRNA-1;_AED=0.17;_eAED=0.17;_QI=130|1|1|1|1|1|12|491|464
chr1_1 exon 48093760 48094057 48093760 ID=Msa0025090-mRNA-1:exon:13768;Parent=Msa0025090-mRNA-1
chr1_1 exon 48094151 48094310 48094151 ID=Msa0025090-mRNA-1:exon:13769;Parent=Msa0025090-mRNA-1
chr1_1 exon 48094709 48094909 48094709 ID=Msa0025090-mRNA-1:exon:13770;Parent=Msa0025090-mRNA-1
chr1_1 exon 48095011 48095072 48095011 ID=Msa0025090-mRNA-1:exon:13771;Parent=Msa0025090-mRNA-1
chr1_1 exon 48095281 48095335 48095281 ID=Msa0025090-mRNA-1:exon:13772;Parent=Msa0025090-mRNA-1
chr1_1 exon 48095436 48095491 48095436 ID=Msa0025090-mRNA-1:exon:13773;Parent=Msa0025090-mRNA-1
chr1_1 exon 48095575 48095661 48095575 ID=Msa0025090-mRNA-1:exon:13774;Parent=Msa0025090-mRNA-1
chr1_1 exon 48095752 48095802 48095752 ID=Msa0025090-mRNA-1:exon:13775;Parent=Msa0025090-mRNA-1
chr1_1 exon 48096041 48096280 48096041 ID=Msa0025090-mRNA-1:exon:13776;Parent=Msa0025090-mRNA-1
chr1_1 exon 48096785 48096878 48096785 ID=Msa0025090-mRNA-1:exon:13777;Parent=Msa0025090-mRNA-1
chr1_1 exon 48096989 48097129 48096989 ID=Msa0025090-mRNA-1:exon:13778;Parent=Msa0025090-mRNA-1
chr1_1 exon 48097223 48097793 48097223 ID=Msa0025090-mRNA-1:exon:13779;Parent=Msa0025090-mRNA-1
chr1_1 five_prime_UTR 48093760 48093889 48093760 ID=Msa0025090-mRNA-1:five_prime_utr;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48093890 48094057 48093890 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48094151 48094310 48094151 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48094709 48094909 48094709 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48095011 48095072 48095011 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48095281 48095335 48095281 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48095436 48095491 48095436 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48095575 48095661 48095575 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48095752 48095802 48095752 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48096041 48096280 48096041 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48096785 48096878 48096785 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48096989 48097129 48096989 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 CDS 48097223 48097302 48097223 ID=Msa0025090-mRNA-1:cds;Parent=Msa0025090-mRNA-1
chr1_1 three_prime_UTR 48097303 48097793 48097303 ID=Msa0025090-mRNA-1:three_prime_utr;Parent=Msa0025090-mRNA-1
Gene Sequence

>Msa0025090

ATGACAATGTCCACAAAAAACTTCATAGTTTATCTAGTATCATGTTCCTGTCTTGCTACTCTCTCTGCGTTATTTCTCATCCATAACAACCAAAAACCATCATTCTCCTTGTTATCATCATCATCAAACTCTAACCGTTATGGTTCTGGAACAGATAGAATTTGGCCTGAATTGGAATTTAGTTGGAAACTTGTTTTGGCTACAGTTATTGGTTTTTTTGGATCAGCATGTGGAACCGTTGGAGGTGTTGGTGGTGGTGGCATTTTTGTTCCTATGCTTAATCTTCTTCTTGGTTTTGATACCAAATCTGCTGCTGCTCTTTCTAAATGTATGATAATGGGGGCATCAGCATCATCAGTTTGGTATAATTTGAGAGTGGCACATCCAACAAAAGAGGTGCCAATATTAGACTATGATTTGGCTCTTTTGTTTCAGCCAATGCTTATGCTTGGGATAACTGTTGGTGTTACTCTCAGTGTTGTTTTCCCTTTTTGGCTTATCACTGTCCTCATTATCATTCTCTTCATAGGAACTTCTTTAAGGTCATTCTTCAAAGGAATTGAAATGTGGAGGGTAGAGACTCTTCTCAAGAATGAAACTGCTAAGCAAGCTACTTTGGTTAATTCTAATGGAGAATTTAAAGCAGTTCTAGTCGACACGAAGCTTGAGCCATTGATCCCTAAAGAAAAGAAGTCAACTATGCAAATTCTCTGTTTCAACCTTAGATGGAAGAGGATTTTAGTGCTTTTGGCTGTGTGGTTTTCTTTCCTCCTTATTCAAATCATCAAGACTGATGTAGAGGCCTGCAGTGTATGGTATTGGGTGCTCTTCGGCTTGCAGTTTCCAATTGCATTTTTGGTGTTTGGCTTTGAAGCAGTCAAGTTGTACAAAGATCACAGAATGAGGATGGGCACAGGGAGCCTAGAATACATATGTGAGGCATCAATAGAATGGAGTGCTACGTCCCTTGCATTTTGTGCAATGAGTGGTATTGTAGGTGGAATTGTTGGAGGCTTACTTGGTTCTGGAGGTGGATTTATTTTGGGGCCTCTTCTCCTTGAGATAGGTGTCATCCCTCAGGTTGCTAGTGCAACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCTGTTTTTGAATTCTACATTCTCAAGAGGTTCCCTATGCCTTATGCATTATACCTCATCACAGTGTCTGTTTTGGCTGGCTTCTGGGGACAGTTCTTTGTTAGAAAATTAGTTGCATTTCTTGGGAGGGCATCAGTCATTGTATTCATCCTCTCTGGTGTTATTTTTGCCAGTGCTCTCACCATGGGTATTGTTGGCACTGAGAAGAGTATTGAAATGATACACAACCATGAGTTCATGGGATTCTTGGGATTTTGTAGCACTTAA

Protein sequence

>Msa0025090

MTMSTKNFIVYLVSCSCLATLSALFLIHNNQKPSFSLLSSSSNSNRYGSGTDRIWPELEFSWKLVLATVIGFFGSACGTVGGVGGGGIFVPMLNLLLGFDTKSAAALSKCMIMGASASSVWYNLRVAHPTKEVPILDYDLALLFQPMLMLGITVGVTLSVVFPFWLITVLIIILFIGTSLRSFFKGIEMWRVETLLKNETAKQATLVNSNGEFKAVLVDTKLEPLIPKEKKSTMQILCFNLRWKRILVLLAVWFSFLLIQIIKTDVEACSVWYWVLFGLQFPIAFLVFGFEAVKLYKDHRMRMGTGSLEYICEASIEWSATSLAFCAMSGIVGGIVGGLLGSGGGFILGPLLLEIGVIPQVASATATFVMMFSSSLSVFEFYILKRFPMPYALYLITVSVLAGFWGQFFVRKLVAFLGRASVIVFILSGVIFASALTMGIVGTEKSIEMIHNHEFMGFLGFCST*