Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019660 | XP_024626104.1 | 93.080 | 289 | 18 | 2 | 1 | 288 | 1 | 288 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019660 | sp|Q9SV60|XTH2_ARATH | 53.791 | 277 | 111 | 7 | 9 | 278 | 12 | 278 | 1.22e-97 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019660 | A0A072U9U3 | 89.273 | 289 | 25 | 3 | 1 | 288 | 1 | 284 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa1019660 | 0.807233 | 5.587422e-50 | -8.615850e-47 |
| Msa0051100 | Msa1019660 | 0.801850 | 7.410285e-49 | -8.615850e-47 |
| Msa0618520 | Msa1019660 | 0.802264 | 6.091746e-49 | -8.615850e-47 |
| Msa0656270 | Msa1019660 | 0.804432 | 2.166693e-49 | -8.615850e-47 |
| Msa0700070 | Msa1019660 | 0.811769 | 5.931684e-51 | -8.615850e-47 |
| Msa0411000 | Msa1019660 | 0.818978 | 1.478403e-52 | -8.615850e-47 |
| Msa0455230 | Msa1019660 | 0.813221 | 2.855925e-51 | -8.615850e-47 |
| Msa1019660 | Msa1059420 | 0.848190 | 7.177520e-60 | -8.615850e-47 |
| Msa1019660 | Msa1073500 | 0.809201 | 2.127170e-50 | -8.615850e-47 |
| Msa1019660 | Msa1104390 | 0.979742 | 1.219768e-148 | -8.615850e-47 |
| Msa1019660 | Msa1361190 | 0.806064 | 9.861122e-50 | -8.615850e-47 |
| Msa1019660 | Msa1440180 | 0.802356 | 5.833083e-49 | -8.615850e-47 |
| Msa1019660 | Msa1449740 | 0.804943 | 1.694224e-49 | -8.615850e-47 |
| Msa0243470 | Msa1019660 | 0.803513 | 3.363419e-49 | -8.615850e-47 |
| Msa0363460 | Msa1019660 | 0.812066 | 5.110201e-51 | -8.615850e-47 |
| Msa0568610 | Msa1019660 | 0.807908 | 4.016617e-50 | -8.615850e-47 |
| Msa0887070 | Msa1019660 | 0.803657 | 3.140305e-49 | -8.615850e-47 |
| Msa0903730 | Msa1019660 | 0.802244 | 6.150020e-49 | -8.615850e-47 |
| Msa0934830 | Msa1019660 | 0.800644 | 1.308444e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019660 | MtrunA17_Chr7g0235541 | 95.238 | 210 | 10 | 0 | 79 | 288 | 1 | 210 | 3.78e-154 | 429 |
| Msa1019660 | MtrunA17_Chr8g0340001 | 57.534 | 219 | 85 | 3 | 63 | 278 | 8 | 221 | 1.79e-90 | 268 |
| Msa1019660 | MtrunA17_Chr2g0303721 | 44.718 | 284 | 140 | 5 | 5 | 286 | 3 | 271 | 8.36e-87 | 260 |
| Msa1019660 | MtrunA17_Chr2g0303861 | 46.503 | 286 | 139 | 6 | 5 | 286 | 3 | 278 | 1.44e-84 | 255 |
| Msa1019660 | MtrunA17_Chr7g0252631 | 45.329 | 289 | 135 | 6 | 16 | 286 | 5 | 288 | 4.30e-82 | 249 |
| Msa1019660 | MtrunA17_Chr7g0252621 | 44.718 | 284 | 144 | 6 | 11 | 286 | 10 | 288 | 2.08e-81 | 247 |
| Msa1019660 | MtrunA17_Chr7g0252601 | 44.406 | 286 | 147 | 5 | 8 | 286 | 8 | 288 | 2.42e-81 | 247 |
| Msa1019660 | MtrunA17_Chr4g0054451 | 44.128 | 281 | 146 | 6 | 5 | 280 | 7 | 281 | 1.37e-78 | 240 |
| Msa1019660 | MtrunA17_Chr4g0054431 | 44.203 | 276 | 140 | 7 | 10 | 280 | 13 | 279 | 2.49e-78 | 239 |
| Msa1019660 | MtrunA17_Chr6g0461731 | 44.528 | 265 | 135 | 5 | 28 | 285 | 51 | 310 | 1.35e-76 | 236 |
| Msa1019660 | MtrunA17_Chr6g0461761 | 44.151 | 265 | 136 | 5 | 28 | 285 | 28 | 287 | 8.34e-75 | 230 |
| Msa1019660 | MtrunA17_Chr1g0206081 | 41.115 | 287 | 158 | 7 | 10 | 287 | 12 | 296 | 8.68e-72 | 223 |
| Msa1019660 | MtrunA17_Chr1g0206681 | 43.448 | 290 | 146 | 8 | 10 | 287 | 10 | 293 | 5.93e-70 | 218 |
| Msa1019660 | MtrunA17_Chr4g0072611 | 42.857 | 287 | 140 | 9 | 12 | 287 | 9 | 282 | 1.32e-68 | 214 |
| Msa1019660 | MtrunA17_Chr7g0258911 | 41.696 | 283 | 145 | 7 | 16 | 287 | 8 | 281 | 2.64e-67 | 211 |
| Msa1019660 | MtrunA17_Chr2g0323161 | 41.367 | 278 | 139 | 8 | 16 | 281 | 14 | 279 | 4.84e-67 | 210 |
| Msa1019660 | MtrunA17_Chr4g0023961 | 41.259 | 286 | 130 | 8 | 11 | 277 | 11 | 277 | 8.33e-67 | 210 |
| Msa1019660 | MtrunA17_Chr6g0486581 | 39.024 | 287 | 155 | 8 | 12 | 285 | 4 | 283 | 4.48e-66 | 208 |
| Msa1019660 | MtrunA17_Chr4g0072671 | 44.444 | 270 | 134 | 6 | 27 | 285 | 21 | 285 | 2.08e-65 | 206 |
| Msa1019660 | MtrunA17_Chr2g0299061 | 42.066 | 271 | 141 | 7 | 15 | 277 | 12 | 274 | 1.40e-64 | 204 |
| Msa1019660 | MtrunA17_Chr4g0071341 | 41.935 | 279 | 139 | 8 | 21 | 287 | 16 | 283 | 1.98e-64 | 204 |
| Msa1019660 | MtrunA17_Chr8g0377841 | 40.892 | 269 | 142 | 7 | 15 | 277 | 12 | 269 | 1.13e-62 | 199 |
| Msa1019660 | MtrunA17_Chr3g0122021 | 39.852 | 271 | 144 | 7 | 11 | 277 | 10 | 265 | 1.58e-61 | 196 |
| Msa1019660 | MtrunA17_Chr3g0122031 | 39.852 | 271 | 144 | 7 | 11 | 277 | 10 | 265 | 1.58e-61 | 196 |
| Msa1019660 | MtrunA17_Chr4g0072601 | 41.135 | 282 | 150 | 7 | 17 | 288 | 11 | 286 | 1.07e-60 | 194 |
| Msa1019660 | MtrunA17_Chr3g0096651 | 41.434 | 251 | 134 | 5 | 31 | 277 | 29 | 270 | 1.11e-60 | 194 |
| Msa1019660 | MtrunA17_Chr5g0443391 | 39.510 | 286 | 148 | 7 | 12 | 286 | 8 | 279 | 2.70e-60 | 193 |
| Msa1019660 | MtrunA17_Chr8g0375981 | 37.671 | 292 | 159 | 10 | 10 | 287 | 10 | 292 | 1.03e-56 | 185 |
| Msa1019660 | MtrunA17_Chr8g0389641 | 44.019 | 209 | 107 | 4 | 1 | 207 | 1 | 201 | 6.91e-55 | 178 |
| Msa1019660 | MtrunA17_Chr1g0161951 | 35.932 | 295 | 172 | 8 | 6 | 287 | 3 | 293 | 5.74e-54 | 178 |
| Msa1019660 | MtrunA17_Chr4g0028221 | 36.538 | 312 | 157 | 13 | 5 | 285 | 3 | 304 | 1.46e-52 | 174 |
| Msa1019660 | MtrunA17_Chr2g0327411 | 38.095 | 273 | 149 | 11 | 24 | 285 | 46 | 309 | 1.98e-51 | 171 |
| Msa1019660 | MtrunA17_Chr1g0180451 | 36.721 | 305 | 153 | 12 | 9 | 285 | 2 | 294 | 8.58e-51 | 169 |
| Msa1019660 | MtrunA17_Chr8g0365231 | 36.331 | 278 | 146 | 8 | 30 | 286 | 44 | 311 | 9.26e-51 | 169 |
| Msa1019660 | MtrunA17_Chr7g0264731 | 37.956 | 274 | 149 | 10 | 24 | 286 | 29 | 292 | 1.28e-50 | 168 |
| Msa1019660 | MtrunA17_Chr8g0382041 | 36.508 | 252 | 152 | 5 | 30 | 275 | 32 | 281 | 2.99e-50 | 169 |
| Msa1019660 | MtrunA17_Chr5g0410621 | 35.019 | 257 | 156 | 5 | 30 | 277 | 40 | 294 | 1.45e-49 | 167 |
| Msa1019660 | MtrunA17_Chr8g0390201 | 41.000 | 200 | 107 | 5 | 97 | 285 | 10 | 209 | 1.51e-48 | 160 |
| Msa1019660 | MtrunA17_Chr4g0072681 | 40.611 | 229 | 119 | 7 | 69 | 285 | 20 | 243 | 4.62e-48 | 160 |
| Msa1019660 | MtrunA17_Chr8g0350711 | 34.694 | 147 | 89 | 3 | 54 | 200 | 54 | 193 | 2.92e-16 | 76.3 |
| Msa1019660 | MtrunA17_Chr8g0374231 | 33.010 | 103 | 63 | 4 | 191 | 287 | 1 | 103 | 4.74e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019660 | AT4G13090.1 | 53.791 | 277 | 111 | 7 | 9 | 278 | 12 | 278 | 1.24e-98 | 291 |
| Msa1019660 | AT4G13080.1 | 53.232 | 263 | 112 | 4 | 29 | 286 | 36 | 292 | 1.35e-96 | 286 |
| Msa1019660 | AT3G25050.1 | 50.719 | 278 | 116 | 8 | 20 | 285 | 21 | 289 | 1.48e-91 | 273 |
| Msa1019660 | AT2G06850.1 | 45.775 | 284 | 141 | 6 | 10 | 286 | 14 | 291 | 3.76e-81 | 247 |
| Msa1019660 | AT5G13870.2 | 42.908 | 282 | 152 | 4 | 1 | 278 | 1 | 277 | 1.18e-80 | 246 |
| Msa1019660 | AT5G13870.1 | 42.908 | 282 | 152 | 4 | 1 | 278 | 1 | 277 | 1.18e-80 | 246 |
| Msa1019660 | AT5G13870.3 | 42.908 | 282 | 152 | 4 | 1 | 278 | 1 | 277 | 1.18e-80 | 246 |
| Msa1019660 | AT5G65730.1 | 42.807 | 285 | 148 | 8 | 11 | 286 | 13 | 291 | 2.15e-75 | 232 |
| Msa1019660 | AT1G11545.1 | 43.253 | 289 | 148 | 9 | 10 | 287 | 18 | 301 | 1.21e-74 | 231 |
| Msa1019660 | AT4G37800.1 | 44.118 | 272 | 139 | 7 | 15 | 281 | 19 | 282 | 2.21e-74 | 229 |
| Msa1019660 | AT2G06850.2 | 47.414 | 232 | 110 | 5 | 62 | 286 | 5 | 231 | 4.08e-70 | 217 |
| Msa1019660 | AT2G14620.1 | 41.860 | 301 | 156 | 8 | 1 | 287 | 1 | 296 | 8.25e-69 | 216 |
| Msa1019660 | AT3G23730.1 | 42.593 | 270 | 143 | 6 | 15 | 277 | 10 | 274 | 1.07e-67 | 213 |
| Msa1019660 | AT3G48580.1 | 43.462 | 260 | 125 | 7 | 30 | 285 | 32 | 273 | 1.27e-67 | 212 |
| Msa1019660 | AT4G25810.1 | 43.706 | 286 | 138 | 10 | 12 | 285 | 9 | 283 | 1.35e-67 | 212 |
| Msa1019660 | AT4G28850.1 | 39.057 | 297 | 159 | 11 | 1 | 285 | 1 | 287 | 1.02e-66 | 210 |
| Msa1019660 | AT5G57560.1 | 41.404 | 285 | 147 | 8 | 12 | 285 | 6 | 281 | 2.21e-66 | 209 |
| Msa1019660 | AT4G03210.1 | 40.210 | 286 | 155 | 8 | 10 | 286 | 7 | 285 | 1.24e-65 | 207 |
| Msa1019660 | AT5G57550.1 | 38.699 | 292 | 160 | 8 | 5 | 286 | 1 | 283 | 4.02e-65 | 206 |
| Msa1019660 | AT4G14130.1 | 40.860 | 279 | 152 | 6 | 5 | 277 | 1 | 272 | 3.41e-64 | 203 |
| Msa1019660 | AT5G57540.1 | 42.164 | 268 | 137 | 7 | 31 | 288 | 25 | 284 | 1.97e-63 | 201 |
| Msa1019660 | AT4G30270.1 | 39.362 | 282 | 143 | 7 | 12 | 285 | 4 | 265 | 6.62e-62 | 197 |
| Msa1019660 | AT4G25820.1 | 40.714 | 280 | 147 | 8 | 17 | 287 | 18 | 287 | 9.57e-62 | 197 |
| Msa1019660 | AT5G57530.1 | 40.977 | 266 | 143 | 6 | 31 | 288 | 26 | 285 | 1.69e-61 | 196 |
| Msa1019660 | AT3G48580.3 | 44.105 | 229 | 107 | 6 | 61 | 285 | 3 | 214 | 2.43e-61 | 194 |
| Msa1019660 | AT2G14620.2 | 45.763 | 236 | 114 | 6 | 61 | 287 | 16 | 246 | 7.26e-61 | 194 |
| Msa1019660 | AT2G01850.1 | 36.934 | 287 | 170 | 6 | 10 | 287 | 8 | 292 | 7.27e-61 | 196 |
| Msa1019660 | AT1G14720.1 | 38.321 | 274 | 161 | 5 | 10 | 277 | 8 | 279 | 1.15e-60 | 196 |
| Msa1019660 | AT5G48070.1 | 39.273 | 275 | 148 | 8 | 9 | 278 | 10 | 270 | 5.75e-59 | 190 |
| Msa1019660 | AT2G14620.3 | 45.815 | 227 | 109 | 6 | 70 | 287 | 14 | 235 | 9.07e-59 | 188 |
| Msa1019660 | AT4G03210.2 | 43.534 | 232 | 117 | 7 | 64 | 286 | 31 | 257 | 1.35e-56 | 183 |
| Msa1019660 | AT4G30290.1 | 40.860 | 279 | 146 | 8 | 5 | 278 | 1 | 265 | 1.09e-55 | 181 |
| Msa1019660 | AT2G18800.1 | 36.213 | 301 | 159 | 9 | 11 | 288 | 9 | 299 | 2.03e-55 | 181 |
| Msa1019660 | AT4G30280.1 | 40.000 | 275 | 146 | 8 | 9 | 278 | 10 | 270 | 3.97e-55 | 180 |
| Msa1019660 | AT1G65310.1 | 41.897 | 253 | 132 | 7 | 31 | 278 | 28 | 270 | 2.50e-54 | 178 |
| Msa1019660 | AT1G65310.2 | 41.897 | 253 | 132 | 7 | 31 | 278 | 50 | 292 | 3.15e-54 | 178 |
| Msa1019660 | AT3G48580.2 | 38.846 | 260 | 117 | 8 | 30 | 285 | 32 | 253 | 5.56e-52 | 171 |
| Msa1019660 | AT1G32170.1 | 33.333 | 276 | 169 | 6 | 15 | 277 | 9 | 282 | 3.20e-51 | 172 |
| Msa1019660 | AT3G44990.1 | 37.248 | 298 | 147 | 11 | 15 | 285 | 6 | 290 | 4.17e-50 | 167 |
| Msa1019660 | AT1G10550.1 | 38.189 | 254 | 138 | 7 | 50 | 286 | 59 | 310 | 4.45e-50 | 168 |
| Msa1019660 | AT2G36870.1 | 37.545 | 277 | 144 | 12 | 24 | 285 | 35 | 297 | 6.96e-48 | 162 |
| Msa1019660 | AT4G18990.1 | 32.210 | 267 | 159 | 6 | 30 | 277 | 38 | 301 | 2.76e-45 | 157 |
| Msa1019660 | AT4G18990.2 | 31.250 | 224 | 132 | 5 | 76 | 277 | 4 | 227 | 2.34e-35 | 129 |
| Msa1019660 | AT2G36870.2 | 41.892 | 148 | 76 | 5 | 24 | 165 | 35 | 178 | 6.87e-29 | 108 |
Find 76 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTACCATTCCACCATAAA+TGG | 0.135662 | 7_1:+41649967 | None:intergenic |
| CTCTCATTTGATAAGATTTC+AGG | 0.163732 | 7_1:-41653282 | Msa1019660:intron |
| ACTGCTATTCTCCCCATTTA+TGG | 0.204526 | 7_1:-41649980 | Msa1019660:CDS |
| TCAAAATTGGAATATTCTTC+TGG | 0.215116 | 7_1:-41651334 | Msa1019660:CDS |
| AAGGGTGCACTTACACTATT+TGG | 0.260280 | 7_1:+41650805 | None:intergenic |
| ACGTTTGTTTGCAACGTATA+TGG | 0.261238 | 7_1:+41650924 | None:intergenic |
| GGTGGAATGGTAAGAAATAT+TGG | 0.264713 | 7_1:-41649959 | Msa1019660:CDS |
| CTGGAAGCAAGCACCTTTCC+TGG | 0.285181 | 7_1:-41650060 | Msa1019660:CDS |
| AGCTGGGTTCAGATCAAAAT+TGG | 0.286380 | 7_1:-41651347 | Msa1019660:CDS |
| CATATTCTCTTTGTTGTTGT+GGG | 0.287359 | 7_1:+41649928 | None:intergenic |
| TTCCAAATGTTCAACATTCA+TGG | 0.298583 | 7_1:-41650032 | Msa1019660:CDS |
| AATATTCTTCTGGGTTCTTT+CGG | 0.340619 | 7_1:-41651324 | Msa1019660:CDS |
| CCTGTTCTTGAATATCCTAA+TGG | 0.346243 | 7_1:+41650178 | None:intergenic |
| TACATAAAGAATGTCAAATT+AGG | 0.349402 | 7_1:-41649851 | Msa1019660:CDS |
| GGCTGCCAATCAAATAATTC+AGG | 0.353745 | 7_1:-41650011 | Msa1019660:CDS |
| TCATATTCTCTTTGTTGTTG+TGG | 0.366911 | 7_1:+41649927 | None:intergenic |
| TTCATACATATGGAATCCTT+TGG | 0.369402 | 7_1:-41650836 | Msa1019660:CDS |
| TTCAAAGGCATTTGCACACT+TGG | 0.371397 | 7_1:-41650997 | Msa1019660:CDS |
| AACTCCTAGTGAGTCCTTGC+TGG | 0.377504 | 7_1:+41651285 | None:intergenic |
| CTTACCATTCCACCATAAAT+GGG | 0.387944 | 7_1:+41649968 | None:intergenic |
| TTCTCTAATGTGTAGGAGCT+GGG | 0.403426 | 7_1:-41651363 | Msa1019660:intron |
| ATGTGGATGAAACACCCATT+AGG | 0.403715 | 7_1:-41650193 | Msa1019660:CDS |
| CAAAATTGGAATATTCTTCT+GGG | 0.412588 | 7_1:-41651333 | Msa1019660:CDS |
| GTGGAATGGTAAGAAATATT+GGG | 0.416621 | 7_1:-41649958 | Msa1019660:CDS |
| AGCCATGAATGTTGAACATT+TGG | 0.424054 | 7_1:+41650030 | None:intergenic |
| TATGTATGAAAATCGATTGT+TGG | 0.426647 | 7_1:+41650849 | None:intergenic |
| TTACAGTTAGCATATGGAAT+GGG | 0.447705 | 7_1:-41650115 | Msa1019660:CDS |
| CTGTTCTTGAATATCCTAAT+GGG | 0.448806 | 7_1:+41650179 | None:intergenic |
| GGGGAACCATGGGCATCTAA+TGG | 0.459672 | 7_1:-41650095 | Msa1019660:CDS |
| ATAATTGAAGCTTACTTCAA+AGG | 0.463195 | 7_1:-41651012 | Msa1019660:intron |
| AACGTGTTTGCGAGTGATGA+AGG | 0.466779 | 7_1:-41650906 | Msa1019660:CDS |
| TGAACATTTGGAATTGAGCC+AGG | 0.473153 | 7_1:+41650042 | None:intergenic |
| TGCATGTTACAGTTAGCATA+TGG | 0.473706 | 7_1:-41650121 | Msa1019660:CDS |
| CTATTTGGTGTTGGTTCCAA+AGG | 0.483927 | 7_1:+41650820 | None:intergenic |
| AACAGAACTACAAGGTTACA+TGG | 0.489277 | 7_1:-41653350 | Msa1019660:CDS |
| CCATTAGGATATTCAAGAAC+AGG | 0.490637 | 7_1:-41650178 | Msa1019660:CDS |
| GCACTTACACTATTTGGTGT+TGG | 0.490892 | 7_1:+41650811 | None:intergenic |
| ATGTAACCTTGTAGTTCTGT+TGG | 0.516191 | 7_1:+41653352 | None:intergenic |
| AGCTTTGCTAGCACATATCA+AGG | 0.520811 | 7_1:+41653389 | None:intergenic |
| GGACTCACTAGGAGTTGTTA+CGG | 0.523311 | 7_1:-41651278 | Msa1019660:CDS |
| TTGTTTGAGCAGACCAGCCA+TGG | 0.541952 | 7_1:+41653846 | None:intergenic |
| TTCTTACCATTAGATGCCCA+TGG | 0.543129 | 7_1:+41650089 | None:intergenic |
| ATTCAAGAACAGGTCAAACA+TGG | 0.543502 | 7_1:-41650168 | Msa1019660:CDS |
| ACGTGTTTGCGAGTGATGAA+GGG | 0.544415 | 7_1:-41650905 | Msa1019660:CDS |
| TCTCCCCATTTATGGTGGAA+TGG | 0.549057 | 7_1:-41649972 | Msa1019660:CDS |
| TCAAAGGCATTTGCACACTT+GGG | 0.549276 | 7_1:-41650996 | Msa1019660:CDS |
| AGGCATTTGCACACTTGGGA+GGG | 0.551934 | 7_1:-41650992 | Msa1019660:CDS |
| GAGAACAAAGGCATAGCCTC+TGG | 0.558268 | 7_1:-41650878 | Msa1019660:CDS |
| CTAATGGTAAGAAAATTGAC+TGG | 0.563990 | 7_1:-41650079 | Msa1019660:CDS |
| GTTACAGTTAGCATATGGAA+TGG | 0.566053 | 7_1:-41650116 | Msa1019660:CDS |
| GCTATTCTCCCCATTTATGG+TGG | 0.569788 | 7_1:-41649977 | Msa1019660:CDS |
| AAGGCATTTGCACACTTGGG+AGG | 0.573084 | 7_1:-41650993 | Msa1019660:CDS |
| GCATATGGAATGGGGAACCA+TGG | 0.575883 | 7_1:-41650106 | Msa1019660:CDS |
| CATATGGAATGGGGAACCAT+GGG | 0.578085 | 7_1:-41650105 | Msa1019660:CDS |
| CACGTCTTCTTTGTGGACAA+CGG | 0.581793 | 7_1:-41653318 | Msa1019660:CDS |
| ATTTGGAATTGAGCCAGGAA+AGG | 0.585724 | 7_1:+41650047 | None:intergenic |
| GAGAATATGAAGATGTGAGG+AGG | 0.589124 | 7_1:-41649914 | Msa1019660:CDS |
| CGTGTTTGCGAGTGATGAAG+GGG | 0.591135 | 7_1:-41650904 | Msa1019660:CDS |
| GTAACATGCATTTGTTGTGA+AGG | 0.597132 | 7_1:+41650134 | None:intergenic |
| AAGGCTAGTGCAACGAAGAG+AGG | 0.603840 | 7_1:+41653408 | None:intergenic |
| ATACCCAGCAAGGACTCACT+AGG | 0.610289 | 7_1:-41651289 | Msa1019660:CDS |
| AGGCTAGTGCAACGAAGAGA+GGG | 0.612578 | 7_1:+41653409 | None:intergenic |
| ACAGAACTACAAGGTTACAT+GGG | 0.615473 | 7_1:-41653349 | Msa1019660:CDS |
| ATGTGCTAGCAAAGCTGTTG+AGG | 0.616184 | 7_1:-41653382 | Msa1019660:CDS |
| AAAGAGAATATGAAGATGTG+AGG | 0.618781 | 7_1:-41649917 | Msa1019660:CDS |
| TTACCATTCCACCATAAATG+GGG | 0.625075 | 7_1:+41649969 | None:intergenic |
| CTGGTCTGCTCAAACAACAA+AGG | 0.637545 | 7_1:-41653840 | Msa1019660:intron |
| TTCAAGAACAGGTCAAACAT+GGG | 0.644348 | 7_1:-41650167 | Msa1019660:CDS |
| AAGCTTCCAACAGAACTACA+AGG | 0.649713 | 7_1:-41653358 | Msa1019660:CDS |
| TACAGTTAGCATATGGAATG+GGG | 0.653679 | 7_1:-41650114 | Msa1019660:CDS |
| GAGAATTAAGATACCCAGCA+AGG | 0.659349 | 7_1:-41651299 | Msa1019660:CDS |
| TATGACTACTGTTCTGACAG+AGG | 0.664302 | 7_1:-41649879 | Msa1019660:CDS |
| CAGAACTACAAGGTTACATG+GGG | 0.687388 | 7_1:-41653348 | Msa1019660:CDS |
| CGATTGTTGGATCAAACCAG+AGG | 0.695303 | 7_1:+41650862 | None:intergenic |
| TGTTTGCGAGTGATGAAGGG+GGG | 0.695892 | 7_1:-41650902 | Msa1019660:CDS |
| GTGTTTGCGAGTGATGAAGG+GGG | 0.706203 | 7_1:-41650903 | Msa1019660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATCCAAAAAAAA+TGG | + | chr7_1:41650545-41650564 | None:intergenic | 10.0% |
| !! | TACAAAATCAATAAAGTTTA+GGG | - | chr7_1:41650921-41650940 | Msa1019660:CDS | 15.0% |
| !!! | ATGGTTTTTAACTAATAAAA+AGG | - | chr7_1:41651481-41651500 | Msa1019660:intron | 15.0% |
| !!! | ATTGCAAGTTATTTTATTTT+AGG | + | chr7_1:41652112-41652131 | None:intergenic | 15.0% |
| !! | TGAGAAATTAAACTATAATA+TGG | + | chr7_1:41652296-41652315 | None:intergenic | 15.0% |
| !! | ATTAAAAATGAAGTATATAC+TGG | + | chr7_1:41653370-41653389 | None:intergenic | 15.0% |
| !!! | ACATTTTATTTTGATAAAGT+TGG | + | chr7_1:41653417-41653436 | None:intergenic | 15.0% |
| !! | ATCAAAATAAATTATTGATG+TGG | - | chr7_1:41653447-41653466 | Msa1019660:intron | 15.0% |
| !!! | GAAACATTATTAAAATTTTC+AGG | - | chr7_1:41653472-41653491 | Msa1019660:intron | 15.0% |
| !! | AATTTATGTTTACTTCCTTT+AGG | - | chr7_1:41650508-41650527 | Msa1019660:intron | 20.0% |
| !!! | TTATGTTTGACCATTTTTTT+TGG | - | chr7_1:41650532-41650551 | Msa1019660:intron | 20.0% |
| !! | ATGAAATAATTTAGATAGAC+AGG | - | chr7_1:41650663-41650682 | Msa1019660:intron | 20.0% |
| !!! | TCTTTGGGATAAAATATATA+TGG | + | chr7_1:41650883-41650902 | None:intergenic | 20.0% |
| !! | ATGAAAAGCTAATATTCTTT+GGG | + | chr7_1:41650898-41650917 | None:intergenic | 20.0% |
| !! | TATGAAAAGCTAATATTCTT+TGG | + | chr7_1:41650899-41650918 | None:intergenic | 20.0% |
| !! | GTACAAAATCAATAAAGTTT+AGG | - | chr7_1:41650920-41650939 | Msa1019660:CDS | 20.0% |
| !! | CATGAAAATATCATTAACTT+AGG | - | chr7_1:41651219-41651238 | Msa1019660:intron | 20.0% |
| !! | CTCAAAATATAAGTAAAAGT+AGG | + | chr7_1:41651415-41651434 | None:intergenic | 20.0% |
| !!! | AATGATTAGAAAAGAGTTTT+GGG | - | chr7_1:41651652-41651671 | Msa1019660:intron | 20.0% |
| !!! | TAATAAAAATAAAAGCGTCT+TGG | - | chr7_1:41651707-41651726 | Msa1019660:intron | 20.0% |
| !!! | AATAAAAATAAAAGCGTCTT+GGG | - | chr7_1:41651708-41651727 | Msa1019660:intron | 20.0% |
| !! | TATCGTAATATAAAAGTTTG+TGG | + | chr7_1:41652498-41652517 | None:intergenic | 20.0% |
| !! | AATTGAAAAAAATTTGTCCT+CGG | - | chr7_1:41653344-41653363 | Msa1019660:CDS | 20.0% |
| !!! | AAAGTTGGACAATTTTATTT+TGG | + | chr7_1:41653402-41653421 | None:intergenic | 20.0% |
| !!! | TAAAATTTTCAGGTTTTATG+TGG | - | chr7_1:41653482-41653501 | Msa1019660:intron | 20.0% |
| !!! | ATTTTCCTGAATTATTTGAT+TGG | + | chr7_1:41653689-41653708 | None:intergenic | 20.0% |
| !! | TACATAAAGAATGTCAAATT+AGG | - | chr7_1:41653841-41653860 | Msa1019660:CDS | 20.0% |
| !!! | TATTTTTTGTGTTTTTCGTG+TGG | + | chr7_1:41650001-41650020 | None:intergenic | 25.0% |
| ! | AAATCTAAACATCTTGAACA+AGG | - | chr7_1:41650725-41650744 | Msa1019660:intron | 25.0% |
| ! | AGATAATGTTGCAAAAAGTT+AGG | + | chr7_1:41650754-41650773 | None:intergenic | 25.0% |
| ! | TCAACATGAACAAATGTATT+TGG | - | chr7_1:41651353-41651372 | Msa1019660:intron | 25.0% |
| ! | AATATAAGTAAAAGTAGGTC+AGG | + | chr7_1:41651410-41651429 | None:intergenic | 25.0% |
| !! | GTTTTACTCATCAACTTATA+AGG | + | chr7_1:41651554-41651573 | None:intergenic | 25.0% |
| !! | CAATGATTAGAAAAGAGTTT+TGG | - | chr7_1:41651651-41651670 | Msa1019660:intron | 25.0% |
| !! | GAAACTTGTCTTTAGAAAAA+GGG | + | chr7_1:41651800-41651819 | None:intergenic | 25.0% |
| !! | AGAAACTTGTCTTTAGAAAA+AGG | + | chr7_1:41651801-41651820 | None:intergenic | 25.0% |
| ! | ATCAAAGTTTCTCCATATTA+TGG | - | chr7_1:41651830-41651849 | Msa1019660:intron | 25.0% |
| ! | TCAAAGTTTCTCCATATTAT+GGG | - | chr7_1:41651831-41651850 | Msa1019660:intron | 25.0% |
| ! | TAGGTCAGAAATACTAAAAT+AGG | - | chr7_1:41651857-41651876 | Msa1019660:intron | 25.0% |
| ! | TTGTGCAAAAATATAACAAG+TGG | + | chr7_1:41651931-41651950 | None:intergenic | 25.0% |
| ! | GACTCATACAAAAATATCTT+GGG | + | chr7_1:41651980-41651999 | None:intergenic | 25.0% |
| ! | TGACTCATACAAAAATATCT+TGG | + | chr7_1:41651981-41652000 | None:intergenic | 25.0% |
| !! | TTTTGTATGAGTCATATCTT+TGG | - | chr7_1:41651987-41652006 | Msa1019660:intron | 25.0% |
| ! | ATACAAAAATATCTTGTGCA+AGG | + | chr7_1:41652020-41652039 | None:intergenic | 25.0% |
| ! | AGGAACAAATATTTGAAAGA+TGG | + | chr7_1:41652092-41652111 | None:intergenic | 25.0% |
| ! | TGAAGTAAAATACTTCTAGA+AGG | - | chr7_1:41652132-41652151 | Msa1019660:intron | 25.0% |
| !!! | TTTACTTTTCTCTAATGTGT+AGG | - | chr7_1:41652322-41652341 | Msa1019660:intron | 25.0% |
| ! | TCAAAATTGGAATATTCTTC+TGG | - | chr7_1:41652358-41652377 | Msa1019660:intron | 25.0% |
| ! | CAAAATTGGAATATTCTTCT+GGG | - | chr7_1:41652359-41652378 | Msa1019660:intron | 25.0% |
| ! | CATAGTTAAATATTGATGCT+TGG | + | chr7_1:41652616-41652635 | None:intergenic | 25.0% |
| ! | ATAATTGAAGCTTACTTCAA+AGG | - | chr7_1:41652680-41652699 | Msa1019660:intron | 25.0% |
| !!! | TGAGATTGACTTTGAATTTT+TGG | - | chr7_1:41652731-41652750 | Msa1019660:intron | 25.0% |
| !!! | GAGATTGACTTTGAATTTTT+GGG | - | chr7_1:41652732-41652751 | Msa1019660:intron | 25.0% |
| ! | TATGTATGAAAATCGATTGT+TGG | + | chr7_1:41652846-41652865 | None:intergenic | 25.0% |
| !!! | ACAATCGATTTTCATACATA+TGG | - | chr7_1:41652846-41652865 | Msa1019660:intron | 25.0% |
| ! | ATGAAAGAATTAACGTTTAG+CGG | - | chr7_1:41653121-41653140 | Msa1019660:intron | 25.0% |
| ! | ATTTGAATTGGTTACATGAA+GGG | + | chr7_1:41653292-41653311 | None:intergenic | 25.0% |
| ! | TATTTGAATTGGTTACATGA+AGG | + | chr7_1:41653293-41653312 | None:intergenic | 25.0% |
| ! | TCTCTCTATTAGATTTCAAA+TGG | + | chr7_1:41653320-41653339 | None:intergenic | 25.0% |
| !!! | GACAATTTTATTTTGGACTA+TGG | + | chr7_1:41653395-41653414 | None:intergenic | 25.0% |
| TGCATACATGGAAAATACTT+GGG | + | chr7_1:41650195-41650214 | None:intergenic | 30.0% | |
| ATGCATACATGGAAAATACT+TGG | + | chr7_1:41650196-41650215 | None:intergenic | 30.0% | |
| ! | AATAGAAGTACATGCATACA+TGG | + | chr7_1:41650207-41650226 | None:intergenic | 30.0% |
| AAAAAATCACGTCTTCTTTG+TGG | - | chr7_1:41650367-41650386 | Msa1019660:intron | 30.0% | |
| CTCTCATTTGATAAGATTTC+AGG | - | chr7_1:41650410-41650429 | Msa1019660:intron | 30.0% | |
| ATGGTCAAACATAAACCTAA+AGG | + | chr7_1:41650526-41650545 | None:intergenic | 30.0% | |
| AACAAAAATTGTGATTCGCA+CGG | + | chr7_1:41650790-41650809 | None:intergenic | 30.0% | |
| ! | AATTTTTGAACCCAGAACAA+TGG | + | chr7_1:41650856-41650875 | None:intergenic | 30.0% |
| ATGTCGAATTGCATAATCTA+CGG | + | chr7_1:41650966-41650985 | None:intergenic | 30.0% | |
| ! | AATCTAGTTCATTGCACTTA+TGG | + | chr7_1:41651057-41651076 | None:intergenic | 30.0% |
| ! | GAGAAAGTGTATATATGTAG+AGG | + | chr7_1:41651314-41651333 | None:intergenic | 30.0% |
| AAAGAGACGTGTTTAATCAA+AGG | - | chr7_1:41651453-41651472 | Msa1019660:intron | 30.0% | |
| TGTTTAATCAAAGGAGATCA+TGG | - | chr7_1:41651462-41651481 | Msa1019660:intron | 30.0% | |
| TACTCATCAACTTATAAGGT+GGG | + | chr7_1:41651550-41651569 | None:intergenic | 30.0% | |
| TTACTCATCAACTTATAAGG+TGG | + | chr7_1:41651551-41651570 | None:intergenic | 30.0% | |
| CGATACTCTTATTACTACTT+CGG | + | chr7_1:41651595-41651614 | None:intergenic | 30.0% | |
| !!! | GAGTTTTGGGTTATAAAGAT+TGG | - | chr7_1:41651665-41651684 | Msa1019660:intron | 30.0% |
| !! | CAATATGAAGTTCTGGTTTA+GGG | + | chr7_1:41651775-41651794 | None:intergenic | 30.0% |
| AAAGAAGCAAAAGCAGTAAA+AGG | - | chr7_1:41651890-41651909 | Msa1019660:intron | 30.0% | |
| AAGAAGCAAAAGCAGTAAAA+GGG | - | chr7_1:41651891-41651910 | Msa1019660:intron | 30.0% | |
| AAAGCAGTAAAAGGGTAATA+TGG | - | chr7_1:41651899-41651918 | Msa1019660:intron | 30.0% | |
| AAGCAGTAAAAGGGTAATAT+GGG | - | chr7_1:41651900-41651919 | Msa1019660:intron | 30.0% | |
| ATATTTGAAAGATGGAGTCT+TGG | + | chr7_1:41652084-41652103 | None:intergenic | 30.0% | |
| GACTCATCATAAGTTTATCA+TGG | - | chr7_1:41652230-41652249 | Msa1019660:intron | 30.0% | |
| AATATTCTTCTGGGTTCTTT+CGG | - | chr7_1:41652368-41652387 | Msa1019660:intron | 30.0% | |
| TTAAATTGCAGTTGTGATTG+TGG | - | chr7_1:41652467-41652486 | Msa1019660:intron | 30.0% | |
| TTGCAATTTGCAAATGCAAT+TGG | - | chr7_1:41652588-41652607 | Msa1019660:intron | 30.0% | |
| !! | TTTGAATTTTTGGGCAACAA+AGG | - | chr7_1:41652741-41652760 | Msa1019660:intron | 30.0% |
| TTCATACATATGGAATCCTT+TGG | - | chr7_1:41652856-41652875 | Msa1019660:intron | 30.0% | |
| GAAAATATGGAACTTGAATC+TGG | + | chr7_1:41652987-41653006 | None:intergenic | 30.0% | |
| ! | TTGGCTTTCACAATCAAAAT+CGG | - | chr7_1:41653033-41653052 | Msa1019660:intron | 30.0% |
| TGAAAACAATCTAGTTGAGT+GGG | + | chr7_1:41653195-41653214 | None:intergenic | 30.0% | |
| ATGAAAACAATCTAGTTGAG+TGG | + | chr7_1:41653196-41653215 | None:intergenic | 30.0% | |
| CAAATGGTAGCTATTTGAAT+TGG | + | chr7_1:41653304-41653323 | None:intergenic | 30.0% | |
| CTGTTCTTGAATATCCTAAT+GGG | + | chr7_1:41653516-41653535 | None:intergenic | 30.0% | |
| TTACAGTTAGCATATGGAAT+GGG | - | chr7_1:41653577-41653596 | Msa1019660:intron | 30.0% | |
| CTAATGGTAAGAAAATTGAC+TGG | - | chr7_1:41653613-41653632 | Msa1019660:intron | 30.0% | |
| TTCCAAATGTTCAACATTCA+TGG | - | chr7_1:41653660-41653679 | Msa1019660:intron | 30.0% | |
| GTGGAATGGTAAGAAATATT+GGG | - | chr7_1:41653734-41653753 | Msa1019660:intron | 30.0% | |
| !! | CATATTCTCTTTGTTGTTGT+GGG | + | chr7_1:41653767-41653786 | None:intergenic | 30.0% |
| !! | TCATATTCTCTTTGTTGTTG+TGG | + | chr7_1:41653768-41653787 | None:intergenic | 30.0% |
| AAAGAGAATATGAAGATGTG+AGG | - | chr7_1:41653775-41653794 | Msa1019660:intron | 30.0% | |
| TCTTAGTCAAGATATCTCGA+CGG | - | chr7_1:41649896-41649915 | Msa1019660:CDS | 35.0% | |
| CACTAATCACTTGGATTCTA+TGG | + | chr7_1:41650117-41650136 | None:intergenic | 35.0% | |
| TCATGCATACACTAATCACT+TGG | + | chr7_1:41650126-41650145 | None:intergenic | 35.0% | |
| TATGCATGAGTACATTTGTG+TGG | - | chr7_1:41650137-41650156 | Msa1019660:CDS | 35.0% | |
| ! | ATGTAACCTTGTAGTTCTGT+TGG | + | chr7_1:41650343-41650362 | None:intergenic | 35.0% |
| AACAGAACTACAAGGTTACA+TGG | - | chr7_1:41650342-41650361 | Msa1019660:intron | 35.0% | |
| ACAGAACTACAAGGTTACAT+GGG | - | chr7_1:41650343-41650362 | Msa1019660:intron | 35.0% | |
| AGCAAATGGTGCATACATAT+TGG | + | chr7_1:41650594-41650613 | None:intergenic | 35.0% | |
| AGAACGCGTTAAAAAGCAAA+TGG | + | chr7_1:41650608-41650627 | None:intergenic | 35.0% | |
| AGATGAATTGTCCATTGTTC+TGG | - | chr7_1:41650842-41650861 | Msa1019660:CDS | 35.0% | |
| GATGAATTGTCCATTGTTCT+GGG | - | chr7_1:41650843-41650862 | Msa1019660:CDS | 35.0% | |
| ATGCAATTCGACATGTATCT+TGG | - | chr7_1:41650972-41650991 | Msa1019660:CDS | 35.0% | |
| TTGAATTCATAACTCCCTGT+CGG | + | chr7_1:41651620-41651639 | None:intergenic | 35.0% | |
| !! | TAAAAGCGTCTTGGGATTAT+TGG | - | chr7_1:41651716-41651735 | Msa1019660:intron | 35.0% |
| !! | CCAATATGAAGTTCTGGTTT+AGG | + | chr7_1:41651776-41651795 | None:intergenic | 35.0% |
| CCTAAACCAGAACTTCATAT+TGG | - | chr7_1:41651773-41651792 | Msa1019660:intron | 35.0% | |
| AGCAGTAAAAGGGTAATATG+GGG | - | chr7_1:41651901-41651920 | Msa1019660:intron | 35.0% | |
| !! | AATTTTTGGGCAACAAAGGA+AGG | - | chr7_1:41652745-41652764 | Msa1019660:intron | 35.0% |
| ACGTTTGTTTGCAACGTATA+TGG | + | chr7_1:41652771-41652790 | None:intergenic | 35.0% | |
| AATCTTGACCGTAAGAGAAA+GGG | + | chr7_1:41652908-41652927 | None:intergenic | 35.0% | |
| ! | CATCCATGCATTTAAGACAT+CGG | - | chr7_1:41652935-41652954 | Msa1019660:intron | 35.0% |
| TGGCTTTCACAATCAAAATC+GGG | - | chr7_1:41653034-41653053 | Msa1019660:intron | 35.0% | |
| ATCTCGAATGTGTAAGCAAA+AGG | - | chr7_1:41653068-41653087 | Msa1019660:intron | 35.0% | |
| TCTCGAATGTGTAAGCAAAA+GGG | - | chr7_1:41653069-41653088 | Msa1019660:intron | 35.0% | |
| AAAGGGAATTCAATTTCCTC+CGG | - | chr7_1:41653086-41653105 | Msa1019660:intron | 35.0% | |
| ! | CTTTCATTTTGAATGCTCAC+CGG | + | chr7_1:41653108-41653127 | None:intergenic | 35.0% |
| GAAAACAATCTAGTTGAGTG+GGG | + | chr7_1:41653194-41653213 | None:intergenic | 35.0% | |
| ACTTTGTGTCCTTAAACATG+TGG | + | chr7_1:41653247-41653266 | None:intergenic | 35.0% | |
| CCTGTTCTTGAATATCCTAA+TGG | + | chr7_1:41653517-41653536 | None:intergenic | 35.0% | |
| CCATTAGGATATTCAAGAAC+AGG | - | chr7_1:41653514-41653533 | Msa1019660:intron | 35.0% | |
| ATTCAAGAACAGGTCAAACA+TGG | - | chr7_1:41653524-41653543 | Msa1019660:intron | 35.0% | |
| TTCAAGAACAGGTCAAACAT+GGG | - | chr7_1:41653525-41653544 | Msa1019660:intron | 35.0% | |
| !! | GTAACATGCATTTGTTGTGA+AGG | + | chr7_1:41653561-41653580 | None:intergenic | 35.0% |
| TGCATGTTACAGTTAGCATA+TGG | - | chr7_1:41653571-41653590 | Msa1019660:intron | 35.0% | |
| GTTACAGTTAGCATATGGAA+TGG | - | chr7_1:41653576-41653595 | Msa1019660:intron | 35.0% | |
| TACAGTTAGCATATGGAATG+GGG | - | chr7_1:41653578-41653597 | Msa1019660:intron | 35.0% | |
| AGCCATGAATGTTGAACATT+TGG | + | chr7_1:41653665-41653684 | None:intergenic | 35.0% | |
| TTACCATTCCACCATAAATG+GGG | + | chr7_1:41653726-41653745 | None:intergenic | 35.0% | |
| CTTACCATTCCACCATAAAT+GGG | + | chr7_1:41653727-41653746 | None:intergenic | 35.0% | |
| TCTTACCATTCCACCATAAA+TGG | + | chr7_1:41653728-41653747 | None:intergenic | 35.0% | |
| GGTGGAATGGTAAGAAATAT+TGG | - | chr7_1:41653733-41653752 | Msa1019660:intron | 35.0% | |
| TCTGCTCAAACAACAAAGGT+CGG | - | chr7_1:41649856-41649875 | Msa1019660:CDS | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | + | chr7_1:41650163-41650182 | None:intergenic | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | + | chr7_1:41650164-41650183 | None:intergenic | 40.0% | |
| AGCTTTGCTAGCACATATCA+AGG | + | chr7_1:41650306-41650325 | None:intergenic | 40.0% | |
| AAGCTTCCAACAGAACTACA+AGG | - | chr7_1:41650334-41650353 | Msa1019660:intron | 40.0% | |
| CAGAACTACAAGGTTACATG+GGG | - | chr7_1:41650344-41650363 | Msa1019660:intron | 40.0% | |
| !! | ACGTCTCTTTTCTAGTGTTC+TGG | + | chr7_1:41651443-41651462 | None:intergenic | 40.0% |
| TGAGTAAAACTGCAAGTGCA+CGG | - | chr7_1:41651564-41651583 | Msa1019660:intron | 40.0% | |
| !! | AATAAGAGTATCGTTCCGAC+AGG | - | chr7_1:41651602-41651621 | Msa1019660:intron | 40.0% |
| !! | ATAAGAGTATCGTTCCGACA+GGG | - | chr7_1:41651603-41651622 | Msa1019660:intron | 40.0% |
| !! | GTTTAGGGTTTGGTTTGTGA+AGG | + | chr7_1:41651760-41651779 | None:intergenic | 40.0% |
| !! | TGAAGTTCTGGTTTAGGGTT+TGG | + | chr7_1:41651770-41651789 | None:intergenic | 40.0% |
| AAGGGTCCAATATGAAGTTC+TGG | + | chr7_1:41651782-41651801 | None:intergenic | 40.0% | |
| TTCTCCATATTATGGGCTCT+AGG | - | chr7_1:41651838-41651857 | Msa1019660:intron | 40.0% | |
| GGAGCAAAAGAAAGGAGAAT+TGG | + | chr7_1:41652063-41652082 | None:intergenic | 40.0% | |
| ATCATGGCACTACGTGATAT+TGG | - | chr7_1:41652246-41652265 | Msa1019660:intron | 40.0% | |
| TTTCTCTAATGTGTAGGAGC+TGG | - | chr7_1:41652328-41652347 | Msa1019660:intron | 40.0% | |
| TTCTCTAATGTGTAGGAGCT+GGG | - | chr7_1:41652329-41652348 | Msa1019660:intron | 40.0% | |
| AGCTGGGTTCAGATCAAAAT+TGG | - | chr7_1:41652345-41652364 | Msa1019660:intron | 40.0% | |
| GAGAATTAAGATACCCAGCA+AGG | - | chr7_1:41652393-41652412 | Msa1019660:intron | 40.0% | |
| !! | TTCAAAGGCATTTGCACACT+TGG | - | chr7_1:41652695-41652714 | Msa1019660:intron | 40.0% |
| !! | TCAAAGGCATTTGCACACTT+GGG | - | chr7_1:41652696-41652715 | Msa1019660:intron | 40.0% |
| !! | CTATTTGGTGTTGGTTCCAA+AGG | + | chr7_1:41652875-41652894 | None:intergenic | 40.0% |
| !! | GCACTTACACTATTTGGTGT+TGG | + | chr7_1:41652884-41652903 | None:intergenic | 40.0% |
| ! | AAGGGTGCACTTACACTATT+TGG | + | chr7_1:41652890-41652909 | None:intergenic | 40.0% |
| TAAGTGCACCCTTTCTCTTA+CGG | - | chr7_1:41652897-41652916 | Msa1019660:intron | 40.0% | |
| GAATCTTGACCGTAAGAGAA+AGG | + | chr7_1:41652909-41652928 | None:intergenic | 40.0% | |
| CTTTCACAATCAAAATCGGG+AGG | - | chr7_1:41653037-41653056 | Msa1019660:intron | 40.0% | |
| ACCTATGAGACACACAAACT+AGG | - | chr7_1:41653164-41653183 | Msa1019660:intron | 40.0% | |
| ! | ACCTAGTTTGTGTGTCTCAT+AGG | + | chr7_1:41653168-41653187 | None:intergenic | 40.0% |
| CAAAGTCCTTACCACTTGAA+TGG | - | chr7_1:41653261-41653280 | Msa1019660:intron | 40.0% | |
| GAAGAACCATTCAAGTGGTA+AGG | + | chr7_1:41653270-41653289 | None:intergenic | 40.0% | |
| AATGAAGTATATACTGGCCG+AGG | + | chr7_1:41653364-41653383 | None:intergenic | 40.0% | |
| ATGTGGATGAAACACCCATT+AGG | - | chr7_1:41653499-41653518 | Msa1019660:intron | 40.0% | |
| TTCTTACCATTAGATGCCCA+TGG | + | chr7_1:41653606-41653625 | None:intergenic | 40.0% | |
| ! | ATTTGGAATTGAGCCAGGAA+AGG | + | chr7_1:41653648-41653667 | None:intergenic | 40.0% |
| ! | TGAACATTTGGAATTGAGCC+AGG | + | chr7_1:41653653-41653672 | None:intergenic | 40.0% |
| GGCTGCCAATCAAATAATTC+AGG | - | chr7_1:41653681-41653700 | Msa1019660:intron | 40.0% | |
| ACTGCTATTCTCCCCATTTA+TGG | - | chr7_1:41653712-41653731 | Msa1019660:intron | 40.0% | |
| GAGAATATGAAGATGTGAGG+AGG | - | chr7_1:41653778-41653797 | Msa1019660:intron | 40.0% | |
| TATGACTACTGTTCTGACAG+AGG | - | chr7_1:41653813-41653832 | Msa1019660:intron | 40.0% | |
| CTGGTCTGCTCAAACAACAA+AGG | - | chr7_1:41649852-41649871 | Msa1019660:CDS | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | - | chr7_1:41650156-41650175 | Msa1019660:CDS | 45.0% | |
| ATGTGCTAGCAAAGCTGTTG+AGG | - | chr7_1:41650310-41650329 | Msa1019660:intron | 45.0% | |
| CACGTCTTCTTTGTGGACAA+CGG | - | chr7_1:41650374-41650393 | Msa1019660:intron | 45.0% | |
| CTGACCTAGAGCCCATAATA+TGG | + | chr7_1:41651845-41651864 | None:intergenic | 45.0% | |
| GGAGTCTTGGAGCAAAAGAA+AGG | + | chr7_1:41652071-41652090 | None:intergenic | 45.0% | |
| GGACTCACTAGGAGTTGTTA+CGG | - | chr7_1:41652414-41652433 | Msa1019660:intron | 45.0% | |
| TATGCTCGATGCGACTACAA+TGG | - | chr7_1:41652531-41652550 | Msa1019660:intron | 45.0% | |
| AACGTGTTTGCGAGTGATGA+AGG | - | chr7_1:41652786-41652805 | Msa1019660:intron | 45.0% | |
| ACGTGTTTGCGAGTGATGAA+GGG | - | chr7_1:41652787-41652806 | Msa1019660:intron | 45.0% | |
| CGATTGTTGGATCAAACCAG+AGG | + | chr7_1:41652833-41652852 | None:intergenic | 45.0% | |
| CCACCGATGTCTTAAATGCA+TGG | + | chr7_1:41652941-41652960 | None:intergenic | 45.0% | |
| ! | CCATGCATTTAAGACATCGG+TGG | - | chr7_1:41652938-41652957 | Msa1019660:intron | 45.0% |
| ! | TCATTTTGAATGCTCACCGG+AGG | + | chr7_1:41653105-41653124 | None:intergenic | 45.0% |
| AACCGCTGACCACATGTTTA+AGG | - | chr7_1:41653235-41653254 | Msa1019660:intron | 45.0% | |
| GTCCTTAAACATGTGGTCAG+CGG | + | chr7_1:41653240-41653259 | None:intergenic | 45.0% | |
| GAAGGGAAGAACCATTCAAG+TGG | + | chr7_1:41653275-41653294 | None:intergenic | 45.0% | |
| CATATGGAATGGGGAACCAT+GGG | - | chr7_1:41653587-41653606 | Msa1019660:intron | 45.0% | |
| GCTATTCTCCCCATTTATGG+TGG | - | chr7_1:41653715-41653734 | Msa1019660:intron | 45.0% | |
| ! | TCTCCCCATTTATGGTGGAA+TGG | - | chr7_1:41653720-41653739 | Msa1019660:intron | 45.0% |
| !!! | TTATTTTATAATTGAAAATA+TGG | + | chr7_1:41653000-41653019 | None:intergenic | 5.0% |
| !!! | AAATAAAAATTTGTATTTTT+TGG | - | chr7_1:41653014-41653033 | Msa1019660:intron | 5.0% |
| !!! | AATTTATTTTGATAAAAAAA+TGG | + | chr7_1:41653440-41653459 | None:intergenic | 5.0% |
| AGGCTAGTGCAACGAAGAGA+GGG | + | chr7_1:41650286-41650305 | None:intergenic | 50.0% | |
| AAGGCTAGTGCAACGAAGAG+AGG | + | chr7_1:41650287-41650306 | None:intergenic | 50.0% | |
| ATACCCAGCAAGGACTCACT+AGG | - | chr7_1:41652403-41652422 | Msa1019660:intron | 50.0% | |
| ACTCCTAGTGAGTCCTTGCT+GGG | + | chr7_1:41652409-41652428 | None:intergenic | 50.0% | |
| AACTCCTAGTGAGTCCTTGC+TGG | + | chr7_1:41652410-41652429 | None:intergenic | 50.0% | |
| ! | AAGGCATTTGCACACTTGGG+AGG | - | chr7_1:41652699-41652718 | Msa1019660:intron | 50.0% |
| AGGCATTTGCACACTTGGGA+GGG | - | chr7_1:41652700-41652719 | Msa1019660:intron | 50.0% | |
| CGTGTTTGCGAGTGATGAAG+GGG | - | chr7_1:41652788-41652807 | Msa1019660:intron | 50.0% | |
| GTGTTTGCGAGTGATGAAGG+GGG | - | chr7_1:41652789-41652808 | Msa1019660:intron | 50.0% | |
| TGTTTGCGAGTGATGAAGGG+GGG | - | chr7_1:41652790-41652809 | Msa1019660:intron | 50.0% | |
| ATGAAGGGGGGAGAGAACAA+AGG | - | chr7_1:41652802-41652821 | Msa1019660:intron | 50.0% | |
| ! | GAGAACAAAGGCATAGCCTC+TGG | - | chr7_1:41652814-41652833 | Msa1019660:intron | 50.0% |
| GCATATGGAATGGGGAACCA+TGG | - | chr7_1:41653586-41653605 | Msa1019660:intron | 50.0% | |
| GGGGAACCATGGGCATCTAA+TGG | - | chr7_1:41653597-41653616 | Msa1019660:intron | 55.0% | |
| CTGGAAGCAAGCACCTTTCC+TGG | - | chr7_1:41653632-41653651 | Msa1019660:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 41649848 | 41653866 | 41649848 | ID=Msa1019660;Name=Msa1019660 |
| chr7_1 | mRNA | 41649848 | 41653866 | 41649848 | ID=Msa1019660-mRNA-1;Parent=Msa1019660;Name=Msa1019660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.8|1|1|5|0|288 |
| chr7_1 | exon | 41653841 | 41653866 | 41653841 | ID=Msa1019660-mRNA-1:exon:8109;Parent=Msa1019660-mRNA-1 |
| chr7_1 | exon | 41653283 | 41653443 | 41653283 | ID=Msa1019660-mRNA-1:exon:8108;Parent=Msa1019660-mRNA-1 |
| chr7_1 | exon | 41651270 | 41651370 | 41651270 | ID=Msa1019660-mRNA-1:exon:8107;Parent=Msa1019660-mRNA-1 |
| chr7_1 | exon | 41650819 | 41651024 | 41650819 | ID=Msa1019660-mRNA-1:exon:8106;Parent=Msa1019660-mRNA-1 |
| chr7_1 | exon | 41649848 | 41650220 | 41649848 | ID=Msa1019660-mRNA-1:exon:8105;Parent=Msa1019660-mRNA-1 |
| chr7_1 | CDS | 41653841 | 41653866 | 41653841 | ID=Msa1019660-mRNA-1:cds;Parent=Msa1019660-mRNA-1 |
| chr7_1 | CDS | 41653283 | 41653443 | 41653283 | ID=Msa1019660-mRNA-1:cds;Parent=Msa1019660-mRNA-1 |
| chr7_1 | CDS | 41651270 | 41651370 | 41651270 | ID=Msa1019660-mRNA-1:cds;Parent=Msa1019660-mRNA-1 |
| chr7_1 | CDS | 41650819 | 41651024 | 41650819 | ID=Msa1019660-mRNA-1:cds;Parent=Msa1019660-mRNA-1 |
| chr7_1 | CDS | 41649848 | 41650220 | 41649848 | ID=Msa1019660-mRNA-1:cds;Parent=Msa1019660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
