AlfalfaGEDB | Msa1449740

M. sativa cultivar zhongmu-4 / Msa1449740

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840 GO:0098552 GO:0098572
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1449740	sp\|Q9M3C6\|PSA3C_ARATH	54.333	300	106	6	1	296	2	274	1.05e-105	311

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1449740	A0A072U5C5	98.000	300	4	1	1	298	1	300	0.0	610

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1449740	0.801458	8.920485e-49	-8.615850e-47
Msa0000780	Msa1449740	0.846223	2.485990e-59	-8.615850e-47
Msa0001460	Msa1449740	0.869044	4.156879e-66	-8.615850e-47
Msa0003470	Msa1449740	0.876994	8.963846e-69	-8.615850e-47
Msa0004350	Msa1449740	0.843425	1.412125e-58	-8.615850e-47
Msa0005160	Msa1449740	0.852056	5.929874e-61	-8.615850e-47
Msa0005350	Msa1449740	0.817209	3.712751e-52	-8.615850e-47
Msa0005690	Msa1449740	0.822495	2.297276e-53	-8.615850e-47
Msa0006050	Msa1449740	0.857539	1.523985e-62	-8.615850e-47
Msa0006700	Msa1449740	0.896398	3.834297e-76	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1449740	MtrunA17_Chr6g0450831	98.000	300	4	1	1	298	1	300	0.0	610

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1449740	AT3G55250.1	54.333	300	106	6	1	296	2	274	1.06e-106	311

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Find 73 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAGATTCGACGCA+TGG	0.562381	tig0032685:+25273	Msa1449740:CDS
AAGAGAAGTGATGATGAAGA+TGG	0.607751	tig0032685:-21980	None:intergenic
AAGATGATGGTGATGAAGTG+AGG	0.616181	tig0032685:-21904	None:intergenic
AATGTTGTTAGCAAAGTTAT+TGG	0.287367	tig0032685:+22106	Msa1449740:CDS
ACAAACAAGCAAACTAGTGA+AGG	0.614970	tig0032685:-25654	None:intergenic
ACAACATTTGAAAATGAGTT+TGG	0.277068	tig0032685:-22091	None:intergenic
ACACAACATATATAAACGAG+AGG	0.669113	tig0032685:+21828	Msa1449740:five_prime_UTR
ACAGACTTTCATAGCCATGA+TGG	0.617255	tig0032685:+24144	Msa1449740:CDS
ACCTCCATTGGAACAGCGGG+AGG	0.583730	tig0032685:-25133	None:intergenic
ACCTCCCGCTGTTCCAATGG+AGG	0.583040	tig0032685:+25132	Msa1449740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACAACATATATAAACGAG+AGG	+	tig0032685:21828-21847	Msa1449740:five_prime_UTR	30.0%
CAAAAACAAAACCACAAACA+TGG	+	tig0032685:21871-21890	Msa1449740:exon	30.0%
AGGTTGAAGAATTGTGAATA+TGG	-	tig0032685:21935-21954	None:intergenic	30.0%
TTTCACCATTAAAGCTTACA+TGG	+	tig0032685:22063-22082	Msa1449740:CDS	30.0%
GAACATGAATTAACCTCAAT+AGG	-	tig0032685:22365-22384	None:intergenic	30.0%
GATGTGAATTTATTGGATGA+CGG	+	tig0032685:22622-22641	Msa1449740:intron	30.0%
ACCTTATAGTTGTCAGATTA+CGG	+	tig0032685:23030-23049	Msa1449740:intron	30.0%
GAATATCAACCATAATCAAC+AGG	-	tig0032685:23085-23104	None:intergenic	30.0%
ATTGATACCCAACTAACAAA+TGG	-	tig0032685:23121-23140	None:intergenic	30.0%
TTGTTAGTTGGGTATCAATT+AGG	+	tig0032685:23122-23141	Msa1449740:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0032685	gene	21818	25715	21818	ID=Msa1449740;Name=Msa1449740
tig0032685	mRNA	21818	25715	21818	ID=Msa1449740-mRNA-1;Parent=Msa1449740;Name=Msa1449740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=72\|1\|1\|1\|1\|1\|3\|286\|298
tig0032685	exon	21818	22288	21818	ID=Msa1449740-mRNA-1:exon:17100;Parent=Msa1449740-mRNA-1
tig0032685	exon	24004	24180	24004	ID=Msa1449740-mRNA-1:exon:17101;Parent=Msa1449740-mRNA-1
tig0032685	exon	25109	25715	25109	ID=Msa1449740-mRNA-1:exon:17102;Parent=Msa1449740-mRNA-1
tig0032685	five_prime_UTR	21818	21889	21818	ID=Msa1449740-mRNA-1:five_prime_utr;Parent=Msa1449740-mRNA-1
tig0032685	CDS	21890	22288	21890	ID=Msa1449740-mRNA-1:cds;Parent=Msa1449740-mRNA-1
tig0032685	CDS	24004	24180	24004	ID=Msa1449740-mRNA-1:cds;Parent=Msa1449740-mRNA-1
tig0032685	CDS	25109	25429	25109	ID=Msa1449740-mRNA-1:cds;Parent=Msa1449740-mRNA-1
tig0032685	three_prime_UTR	25430	25715	25430	ID=Msa1449740-mRNA-1:three_prime_utr;Parent=Msa1449740-mRNA-1

Gene Sequence

>Msa1449740

ATGGTACTTTCAAACCTCACTTCATCACCATCATCTTCATCACCATATTCACAATTCTTCAACCTCTCATCATTCTCCAAACTCACATCACCATCTTCATCATCACTTCTCTTCCACAGCCACCACCATGTTCATCACCAAACAAAACAACAAACTTCAAAACCCACTACAAATTTCACCATTAAAGCTTACATGGAGAATCCAAACTCATTTTCAAATGTTGTTAGCAAAGTTATTGGTGCTCTTCCTGTTGTTGGTCTTTTAGCTAGGATTATGAGTGATGAAGGTGGTGTTGGTAATGATCTTATTGATTTTGCTGAGTTTAGAAGAAGGGTTGGTAAGAATTGTACTGCTACTGATTCTACTGCTTTTTATCAGTTTCAAGCAAGAAGAGGAAGGGCAGGGGATCAGGCAGGGGATCCTATCTATGTTCTGCTATGTTGTTGGCTAGCTGCTATTGGTGCAGGTCTTCTCAAAACTGAGGAGATTTTGGAAGGAGTCGGAAGGCTTCGGATCTCAAACGACATTGAATTTGAGGAACAGACTTTCATAGCCATGATGGATGAAGCAAGAGAGAGAAGGGCAAGACAAAAAGGTGCACCTCCCGCTGTTCCAATGGAGGTTCGAGTCGAGAAAGCTCTTGATGCAATCTACGTTTGTTGCTTCGGAAAGGATCCTATAGAGACAGAAGATGAGAGGTTGCTGAGTACAATACTTAGTTCAGTTTTTCCATCTGTTCAAAAACAAGAGATTCGACGCATGGTTAAAGAGATGGCAGACAAAGTAGAAGATGGAGGTATGGATTATATTCCAGATGCTGCTAAGCCTCTATCAAAGGAAGCTGTTGAAATGCAAATGAAAGACCTTAACTTTCTCAAACAAAATAGTAATACTTAG

Protein sequence

>Msa1449740

MVLSNLTSSPSSSSPYSQFFNLSSFSKLTSPSSSSLLFHSHHHVHHQTKQQTSKPTTNFTIKAYMENPNSFSNVVSKVIGALPVVGLLARIMSDEGGVGNDLIDFAEFRRRVGKNCTATDSTAFYQFQARRGRAGDQAGDPIYVLLCCWLAAIGAGLLKTEEILEGVGRLRISNDIEFEEQTFIAMMDEARERRARQKGAPPAVPMEVRVEKALDAIYVCCFGKDPIETEDERLLSTILSSVFPSVQKQEIRRMVKEMADKVEDGGMDYIPDAAKPLSKEAVEMQMKDLNFLKQNSNT*