AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449740 MtrunA17_Chr6g0450831 98.000 300 4 1 1 298 1 300 0.0 610
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449740 AT3G55250.1 54.333 300 106 6 1 296 2 274 1.06e-106 311

Find 73 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCCATGTAAGCTTTAA+TGG 0.159444 tig0032685:-22068 None:intergenic
TCTCAAAACTGAGGAGATTT+TGG 0.193705 tig0032685:+24075 Msa1449740:CDS
ACAACATTTGAAAATGAGTT+TGG 0.277068 tig0032685:-22091 None:intergenic
AGGCTCAAACACCTTGCTTT+AGG 0.281011 tig0032685:-25485 None:intergenic
AGCAAGGTGTTTGAGCCTTT+TGG 0.286437 tig0032685:+25490 Msa1449740:three_prime_UTR
AATGTTGTTAGCAAAGTTAT+TGG 0.287367 tig0032685:+22106 Msa1449740:CDS
TGTTGTTGGCTAGCTGCTAT+TGG 0.290097 tig0032685:+24043 Msa1449740:CDS
TTCACTAGTTTGCTTGTTTG+TGG 0.315318 tig0032685:+25656 Msa1449740:three_prime_UTR
GCAATCTACGTTTGTTGCTT+CGG 0.330000 tig0032685:+25178 Msa1449740:CDS
GTTGTAAAACTTGGGGTTAT+AGG 0.331320 tig0032685:+25549 Msa1449740:three_prime_UTR
TATATGTTGTGTTATCTTGT+TGG 0.347247 tig0032685:-21817 None:intergenic
TGAAGATGGTGATGTGAGTT+TGG 0.354292 tig0032685:-21966 None:intergenic
ATTGGTGCTCTTCCTGTTGT+TGG 0.376523 tig0032685:+22124 Msa1449740:CDS
TTGATATACAATGCATTGAA+TGG 0.390085 tig0032685:+25452 Msa1449740:three_prime_UTR
TAGAGAAGGGCAAGACAAAA+AGG 0.394828 tig0032685:+25106 Msa1449740:intron
TCTATGTTCTGCTATGTTGT+TGG 0.398804 tig0032685:+24029 Msa1449740:CDS
TCAACAGCTTCCTTTGATAG+AGG 0.406723 tig0032685:-25358 None:intergenic
CTCTCATCTTCTGTCTCTAT+AGG 0.411361 tig0032685:-25208 None:intergenic
TACTAGATGTTGTAAAACTT+GGG 0.414953 tig0032685:+25541 Msa1449740:three_prime_UTR
GATAGAGGCTTAGCAGCATC+TGG 0.416100 tig0032685:-25343 None:intergenic
TTCTCGACTCGAACCTCCAT+TGG 0.422859 tig0032685:-25145 None:intergenic
TGGAAGGAGTCGGAAGGCTT+CGG 0.426849 tig0032685:+24095 Msa1449740:CDS
TTTAATGGTGAAATTTGTAG+TGG 0.432350 tig0032685:-22053 None:intergenic
TTATGTGTAGGCAGGGGATC+AGG 0.435584 tig0032685:+23994 Msa1449740:intron
CAACATAGCAGAACATAGAT+AGG 0.442461 tig0032685:-24025 None:intergenic
CTCAAACGACATTGAATTTG+AGG 0.443655 tig0032685:+24120 Msa1449740:CDS
AGATGATACAAAAGATTTCA+AGG 0.444324 tig0032685:+25686 Msa1449740:three_prime_UTR
ATACTAGATGTTGTAAAACT+TGG 0.444757 tig0032685:+25540 Msa1449740:three_prime_UTR
TGGCTAGCTGCTATTGGTGC+AGG 0.446908 tig0032685:+24049 Msa1449740:CDS
AGGTTGAAGAATTGTGAATA+TGG 0.458125 tig0032685:-21932 None:intergenic
TTTCACCATTAAAGCTTACA+TGG 0.460009 tig0032685:+22063 Msa1449740:CDS
GTGTAGGCAGGGGATCAGGC+AGG 0.461380 tig0032685:+23998 Msa1449740:intron
GCTAGGATTATGAGTGATGA+AGG 0.474789 tig0032685:+22154 Msa1449740:CDS
TGCACCTCCCGCTGTTCCAA+TGG 0.475703 tig0032685:+25129 Msa1449740:CDS
GATGAACATGGTGGTGGCTG+TGG 0.501553 tig0032685:-22003 None:intergenic
CTCTCTTGCTTCATCCATCA+TGG 0.504937 tig0032685:-24158 None:intergenic
ATGAGTGATGAAGGTGGTGT+TGG 0.509665 tig0032685:+22163 Msa1449740:CDS
CTAGCTAAAAGACCAACAAC+AGG 0.516749 tig0032685:-22136 None:intergenic
CGAACCTCCATTGGAACAGC+GGG 0.522801 tig0032685:-25136 None:intergenic
GTTTGAAAGTACCATGTTTG+TGG 0.523489 tig0032685:-21882 None:intergenic
ATGGCAGACAAAGTAGAAGA+TGG 0.525072 tig0032685:+25304 Msa1449740:CDS
GCTGAGTTTAGAAGAAGGGT+TGG 0.525341 tig0032685:+22205 Msa1449740:CDS
TTTGGTGATGAACATGGTGG+TGG 0.527219 tig0032685:-22009 None:intergenic
GTAGGCAGGGGATCAGGCAG+GGG 0.535398 tig0032685:+24000 Msa1449740:intron
CAAAGTAGAAGATGGAGGTA+TGG 0.536962 tig0032685:+25312 Msa1449740:CDS
CTACGTTTGTTGCTTCGGAA+AGG 0.538343 tig0032685:+25183 Msa1449740:CDS
TGTAGGCAGGGGATCAGGCA+GGG 0.548433 tig0032685:+23999 Msa1449740:intron
TATCAGTTTCAAGCAAGAAG+AGG 0.555632 tig0032685:+22262 Msa1449740:CDS
TTCCCCTATGAGTAGCCAAA+AGG 0.559654 tig0032685:-25505 None:intergenic
AAAACAAGAGATTCGACGCA+TGG 0.562381 tig0032685:+25273 Msa1449740:CDS
AGTTTCAAGCAAGAAGAGGA+AGG 0.571685 tig0032685:+22266 Msa1449740:CDS
TGCTGCTAAGCCTCTATCAA+AGG 0.573332 tig0032685:+25348 Msa1449740:CDS
TCGACGCATGGTTAAAGAGA+TGG 0.576065 tig0032685:+25285 Msa1449740:CDS
GAATTATATTTCCTAAAGCA+AGG 0.579582 tig0032685:+25474 Msa1449740:three_prime_UTR
ACCTCCCGCTGTTCCAATGG+AGG 0.583040 tig0032685:+25132 Msa1449740:CDS
ACCTCCATTGGAACAGCGGG+AGG 0.583730 tig0032685:-25133 None:intergenic
TTAATGGTGAAATTTGTAGT+GGG 0.585415 tig0032685:-22052 None:intergenic
ACTAGATGTTGTAAAACTTG+GGG 0.590076 tig0032685:+25542 Msa1449740:three_prime_UTR
TCGAACCTCCATTGGAACAG+CGG 0.593033 tig0032685:-25137 None:intergenic
GTTTCAAGCAAGAAGAGGAA+GGG 0.598303 tig0032685:+22267 Msa1449740:CDS
AAGAGAAGTGATGATGAAGA+TGG 0.607751 tig0032685:-21980 None:intergenic
ACAAACAAGCAAACTAGTGA+AGG 0.614970 tig0032685:-25654 None:intergenic
CATGATGGATGAAGCAAGAG+AGG 0.615451 tig0032685:+24159 Msa1449740:CDS
AAGATGATGGTGATGAAGTG+AGG 0.616181 tig0032685:-21904 None:intergenic
ACAGACTTTCATAGCCATGA+TGG 0.617255 tig0032685:+24144 Msa1449740:CDS
CTATAGAGACAGAAGATGAG+AGG 0.617615 tig0032685:+25209 Msa1449740:CDS
TGAGTTTGGAGAATGATGAG+AGG 0.632202 tig0032685:-21952 None:intergenic
GAATATGGTGATGAAGATGA+TGG 0.648564 tig0032685:-21917 None:intergenic
TTGTTTGGTGATGAACATGG+TGG 0.668676 tig0032685:-22012 None:intergenic
ACACAACATATATAAACGAG+AGG 0.669113 tig0032685:+21828 Msa1449740:five_prime_UTR
TGCAGGTCTTCTCAAAACTG+AGG 0.678847 tig0032685:+24066 Msa1449740:CDS
GCAGACAAAGTAGAAGATGG+AGG 0.689858 tig0032685:+25307 Msa1449740:CDS
AGGATTATGAGTGATGAAGG+TGG 0.737229 tig0032685:+22157 Msa1449740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAATTAGAGTTTAA+TGG - tig0032685:22679-22698 None:intergenic 10.0%
!!! ATTAAACTCTAATTTTATAA+AGG + tig0032685:22678-22697 Msa1449740:intron 10.0%
!! AAAGATGCAAAATTTAATAA+AGG - tig0032685:22317-22336 None:intergenic 15.0%
!! TAACCTTAATCAAATTATAA+GGG - tig0032685:23463-23482 None:intergenic 15.0%
!!! TTAAGCTATTTTTATAACAA+AGG - tig0032685:24976-24995 None:intergenic 15.0%
!! TCTCATTCACATAAAATAAA+AGG - tig0032685:22489-22508 None:intergenic 20.0%
!! ATAAAATTAGAGTTTAATGG+AGG - tig0032685:22676-22695 None:intergenic 20.0%
!!! TCTAAAGTTAAGTGTATTTT+TGG + tig0032685:22721-22740 Msa1449740:intron 20.0%
!!! AAAATTGATTCTAACTAGTT+TGG - tig0032685:22966-22985 None:intergenic 20.0%
!!! AAACTAGTTAGAATCAATTT+TGG + tig0032685:22965-22984 Msa1449740:intron 20.0%
!! AATAGTTGTATCATTTGATA+AGG + tig0032685:23321-23340 Msa1449740:intron 20.0%
!! AAATAACATGAAGTAACAAT+TGG + tig0032685:23361-23380 Msa1449740:intron 20.0%
!! ATGCTCAAAATTTAATCTTT+GGG + tig0032685:23434-23453 Msa1449740:intron 20.0%
!! TAACCCTTATAATTTGATTA+AGG + tig0032685:23457-23476 Msa1449740:intron 20.0%
!! CTAACCTTAATCAAATTATA+AGG - tig0032685:23464-23483 None:intergenic 20.0%
!! TGTAACCTTATAATTGATTA+AGG + tig0032685:23594-23613 Msa1449740:intron 20.0%
!! AAAGATTCATATTTGATTGT+GGG - tig0032685:23769-23788 None:intergenic 20.0%
!! AATCAAATATGAATCTTTCT+TGG + tig0032685:23771-23790 Msa1449740:intron 20.0%
!! ATCAAATATGAATCTTTCTT+GGG + tig0032685:23772-23791 Msa1449740:intron 20.0%
!!! TATATTTGATTTGTAGACTA+TGG + tig0032685:24339-24358 Msa1449740:intron 20.0%
!!! TCCTTTTTAATCTACATTTA+GGG - tig0032685:24401-24420 None:intergenic 20.0%
!!! TTCCTTTTTAATCTACATTT+AGG - tig0032685:24402-24421 None:intergenic 20.0%
!! AATAGGAATGATCTAAATAT+TGG + tig0032685:24605-24624 Msa1449740:intron 20.0%
!! ATAGGAATGATCTAAATATT+GGG + tig0032685:24606-24625 Msa1449740:intron 20.0%
!!! TATTTTGTTTGAGAAAGTTA+AGG - tig0032685:25399-25418 None:intergenic 20.0%
!!! TTGAAGTTTGTTGTTTTGTT+TGG - tig0032685:22030-22049 None:intergenic 25.0%
! TTAATGGTGAAATTTGTAGT+GGG - tig0032685:22055-22074 None:intergenic 25.0%
! TTTAATGGTGAAATTTGTAG+TGG - tig0032685:22056-22075 None:intergenic 25.0%
! ACAACATTTGAAAATGAGTT+TGG - tig0032685:22094-22113 None:intergenic 25.0%
! AATGTTGTTAGCAAAGTTAT+TGG + tig0032685:22106-22125 Msa1449740:CDS 25.0%
!! GTTACAATTTTTACCTATTG+AGG + tig0032685:22349-22368 Msa1449740:intron 25.0%
!!! AACCTAATGTTGCATTTTTT+TGG + tig0032685:22401-22420 Msa1449740:intron 25.0%
! AACCAAAAAAATGCAACATT+AGG - tig0032685:22406-22425 None:intergenic 25.0%
!!! TAGTTATTTTTTGACTTGTG+AGG + tig0032685:22431-22450 Msa1449740:intron 25.0%
!!! TGTAAACTAGTTTTACACTT+AGG + tig0032685:22522-22541 Msa1449740:intron 25.0%
! TCCAATTAGAAATGAGAATT+AGG + tig0032685:22545-22564 Msa1449740:intron 25.0%
! ACCTAATTCTCATTTCTAAT+TGG - tig0032685:22549-22568 None:intergenic 25.0%
! GAAAGATGATGTGAATTTAT+TGG + tig0032685:22615-22634 Msa1449740:intron 25.0%
!! ATAAAGGCAATTTTGCATTT+TGG + tig0032685:22694-22713 Msa1449740:intron 25.0%
!! TAAAGGCAATTTTGCATTTT+GGG + tig0032685:22695-22714 Msa1449740:intron 25.0%
!!! TGATTTTGAGTGAATTGATT+CGG + tig0032685:22759-22778 Msa1449740:intron 25.0%
!!! TGATTCGGTAAAATTGATTT+TGG + tig0032685:22774-22793 Msa1449740:intron 25.0%
!! AGTTTAAAGTGAGTTATGTT+TGG + tig0032685:22811-22830 Msa1449740:intron 25.0%
!! GTTTAAAGTGAGTTATGTTT+GGG + tig0032685:22812-22831 Msa1449740:intron 25.0%
!!! TTAGAATCAATTTTGGTCAT+CGG + tig0032685:22972-22991 Msa1449740:intron 25.0%
! AATATCAACCATAATCAACA+GGG - tig0032685:23084-23103 None:intergenic 25.0%
!! CAAAGATTAAATTTTGAGCA+TGG - tig0032685:23435-23454 None:intergenic 25.0%
! CATGCTCAAAATTTAATCTT+TGG + tig0032685:23433-23452 Msa1449740:intron 25.0%
! AAGATGCAAAATTTGAACTT+GGG - tig0032685:23516-23535 None:intergenic 25.0%
!! AAGTTCAAATTTTGCATCTT+GGG + tig0032685:23516-23535 Msa1449740:intron 25.0%
! TATAGTTTGATACCTAAATG+AGG + tig0032685:23544-23563 Msa1449740:intron 25.0%
! ACCTTATAATTGATTAAGGT+TGG + tig0032685:23598-23617 Msa1449740:intron 25.0%
! TTGTTCTGTATAGTTAAATG+AGG + tig0032685:23677-23696 Msa1449740:intron 25.0%
! GAAAGATTCATATTTGATTG+TGG - tig0032685:23770-23789 None:intergenic 25.0%
!! TCTTTTCCTTTTTATTCTTG+AGG + tig0032685:23884-23903 Msa1449740:intron 25.0%
! AATCTACCTCAAGAATAAAA+AGG - tig0032685:23893-23912 None:intergenic 25.0%
! TTCATGTGCTAAAATAGAAA+TGG + tig0032685:23934-23953 Msa1449740:intron 25.0%
! ACCCTAAATGTAGATTAAAA+AGG + tig0032685:24397-24416 Msa1449740:intron 25.0%
!! TGATATTCAACACGATATTT+TGG - tig0032685:24495-24514 None:intergenic 25.0%
!! CAACTTGATAGATTTAGAAT+CGG + tig0032685:24715-24734 Msa1449740:intron 25.0%
! CTAGAGAACTTATGAAAATA+TGG - tig0032685:24898-24917 None:intergenic 25.0%
!! CATATTTTCATAAGTTCTCT+AGG + tig0032685:24896-24915 Msa1449740:intron 25.0%
!! AATTTTCCAGTTGTTAGAAT+AGG - tig0032685:25072-25091 None:intergenic 25.0%
! TTGATATACAATGCATTGAA+TGG + tig0032685:25452-25471 Msa1449740:three_prime_UTR 25.0%
! GAATTATATTTCCTAAAGCA+AGG + tig0032685:25474-25493 Msa1449740:three_prime_UTR 25.0%
! ATACTAGATGTTGTAAAACT+TGG + tig0032685:25540-25559 Msa1449740:three_prime_UTR 25.0%
! TACTAGATGTTGTAAAACTT+GGG + tig0032685:25541-25560 Msa1449740:three_prime_UTR 25.0%
! AGATGATACAAAAGATTTCA+AGG + tig0032685:25686-25705 Msa1449740:three_prime_UTR 25.0%
ACACAACATATATAAACGAG+AGG + tig0032685:21828-21847 Msa1449740:five_prime_UTR 30.0%
CAAAAACAAAACCACAAACA+TGG + tig0032685:21871-21890 Msa1449740:exon 30.0%
AGGTTGAAGAATTGTGAATA+TGG - tig0032685:21935-21954 None:intergenic 30.0%
TTTCACCATTAAAGCTTACA+TGG + tig0032685:22063-22082 Msa1449740:CDS 30.0%
! ATTCTCCATGTAAGCTTTAA+TGG - tig0032685:22071-22090 None:intergenic 30.0%
! ATTTTGCTGAGTTTAGAAGA+AGG + tig0032685:22200-22219 Msa1449740:CDS 30.0%
! TTTTGCTGAGTTTAGAAGAA+GGG + tig0032685:22201-22220 Msa1449740:CDS 30.0%
GAACATGAATTAACCTCAAT+AGG - tig0032685:22365-22384 None:intergenic 30.0%
!!! TATTTTTTGACTTGTGAGGT+TGG + tig0032685:22435-22454 Msa1449740:intron 30.0%
GATGTGAATTTATTGGATGA+CGG + tig0032685:22622-22641 Msa1449740:intron 30.0%
ACCTTATAGTTGTCAGATTA+CGG + tig0032685:23030-23049 Msa1449740:intron 30.0%
GAATATCAACCATAATCAAC+AGG - tig0032685:23085-23104 None:intergenic 30.0%
ATTGATACCCAACTAACAAA+TGG - tig0032685:23121-23140 None:intergenic 30.0%
TTGTTAGTTGGGTATCAATT+AGG + tig0032685:23122-23141 Msa1449740:intron 30.0%
AACCATAAATCACTACATAC+TGG + tig0032685:23237-23256 Msa1449740:intron 30.0%
TTCCAGTATGTAGTGATTTA+TGG - tig0032685:23242-23261 None:intergenic 30.0%
GTAAGAGAAATAAGCACAAT+TGG + tig0032685:23283-23302 Msa1449740:intron 30.0%
CAACTATTGATCATAGAGTT+TGG - tig0032685:23309-23328 None:intergenic 30.0%
AGATGCAAAATTTGAACTTG+GGG - tig0032685:23515-23534 None:intergenic 30.0%
CAAGATGCAAAATTTGAACT+TGG - tig0032685:23517-23536 None:intergenic 30.0%
! CAAGTTCAAATTTTGCATCT+TGG + tig0032685:23515-23534 Msa1449740:intron 30.0%
GCCAACCTTAATCAATTATA+AGG - tig0032685:23602-23621 None:intergenic 30.0%
AATATCCAAATTTGATCGTG+GGG - tig0032685:23659-23678 None:intergenic 30.0%
CAATATCCAAATTTGATCGT+GGG - tig0032685:23660-23679 None:intergenic 30.0%
ACAATATCCAAATTTGATCG+TGG - tig0032685:23661-23680 None:intergenic 30.0%
! GTTAAATGAGGTTGATTTCA+TGG + tig0032685:23689-23708 Msa1449740:intron 30.0%
ATTCATATTTGATTGTGGGA+TGG - tig0032685:23765-23784 None:intergenic 30.0%
! TGGGATTTAAAGTTGTCAAA+TGG + tig0032685:23791-23810 Msa1449740:intron 30.0%
! GGGATTTAAAGTTGTCAAAT+GGG + tig0032685:23792-23811 Msa1449740:intron 30.0%
CAAGTTTGAGTGATTTCATT+CGG + tig0032685:23816-23835 Msa1449740:intron 30.0%
!! ATTAGCCTTCATTCATTGTA+AGG - tig0032685:23856-23875 None:intergenic 30.0%
! TATTCTTGAGGTAGATTTTG+TGG + tig0032685:23896-23915 Msa1449740:intron 30.0%
AATTAGTGTAAACTTAGTCC+AGG + tig0032685:24431-24450 Msa1449740:intron 30.0%
!!! AAAACCAGACTATTTTTTCC+TGG - tig0032685:24452-24471 None:intergenic 30.0%
!!! TTTTGGAGCTCGAAATTTTA+AGG - tig0032685:24478-24497 None:intergenic 30.0%
ATCGTGTTGAATATCAATTC+TGG + tig0032685:24499-24518 Msa1449740:intron 30.0%
GTTGAATATCAATTCTGGAT+CGG + tig0032685:24504-24523 Msa1449740:intron 30.0%
GATGTTCGTTTGTAACTAAT+AGG + tig0032685:24588-24607 Msa1449740:intron 30.0%
TAGGAAAATTCATTGCGATT+GGG - tig0032685:24648-24667 None:intergenic 30.0%
GAAATGGATGAAACTTTACT+AGG - tig0032685:24667-24686 None:intergenic 30.0%
! GCAATTTTCATTCTACGAAA+TGG - tig0032685:24683-24702 None:intergenic 30.0%
GGAATATATGTCATACATCT+TGG - tig0032685:24751-24770 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - tig0032685:24785-24804 None:intergenic 30.0%
AATATGGTGAAAACAGCTTA+TGG - tig0032685:24882-24901 None:intergenic 30.0%
TATGTTGAACACTATAGAGA+AGG + tig0032685:25092-25111 Msa1449740:intron 30.0%
ATGTTGAACACTATAGAGAA+GGG + tig0032685:25093-25112 Msa1449740:intron 30.0%
!!! ATCTCTTGTTTTTGAACAGA+TGG - tig0032685:25265-25284 None:intergenic 30.0%
ACTAGATGTTGTAAAACTTG+GGG + tig0032685:25542-25561 Msa1449740:three_prime_UTR 30.0%
!! GTTTGAAAGTACCATGTTTG+TGG - tig0032685:21885-21904 None:intergenic 35.0%
! GAATATGGTGATGAAGATGA+TGG - tig0032685:21920-21939 None:intergenic 35.0%
! AAGAGAAGTGATGATGAAGA+TGG - tig0032685:21983-22002 None:intergenic 35.0%
!!! GTTTTGTTTGGTGATGAACA+TGG - tig0032685:22018-22037 None:intergenic 35.0%
TATCAGTTTCAAGCAAGAAG+AGG + tig0032685:22262-22281 Msa1449740:CDS 35.0%
! TCATGTAGAATCGATTCTAG+AGG + tig0032685:22915-22934 Msa1449740:intron 35.0%
ACCGTAATCTGACAACTATA+AGG - tig0032685:23034-23053 None:intergenic 35.0%
! GGTTGATATTCGCTAATAAG+TGG + tig0032685:23094-23113 Msa1449740:intron 35.0%
! TAAGTGGTCCATTTGTTAGT+TGG + tig0032685:23110-23129 Msa1449740:intron 35.0%
! AAGTGGTCCATTTGTTAGTT+GGG + tig0032685:23111-23130 Msa1449740:intron 35.0%
TTAGTTGGGTATCAATTAGG+AGG + tig0032685:23125-23144 Msa1449740:intron 35.0%
TAGTTGGGTATCAATTAGGA+GGG + tig0032685:23126-23145 Msa1449740:intron 35.0%
TTCAGGGTAAACTTGTAATC+TGG + tig0032685:23181-23200 Msa1449740:intron 35.0%
GCATGAAATCAACCTCATTT+AGG - tig0032685:23559-23578 None:intergenic 35.0%
ACCAACCTTACAATGAATGA+AGG + tig0032685:23848-23867 Msa1449740:intron 35.0%
!! GGTGTTTGTTTGTTATGTGT+AGG + tig0032685:23982-24001 Msa1449740:intron 35.0%
!! TTTGTTTGTTATGTGTAGGC+AGG + tig0032685:23986-24005 Msa1449740:intron 35.0%
!! TTGTTTGTTATGTGTAGGCA+GGG + tig0032685:23987-24006 Msa1449740:intron 35.0%
CAACATAGCAGAACATAGAT+AGG - tig0032685:24028-24047 None:intergenic 35.0%
TCTATGTTCTGCTATGTTGT+TGG + tig0032685:24029-24048 Msa1449740:CDS 35.0%
! TCTCAAAACTGAGGAGATTT+TGG + tig0032685:24075-24094 Msa1449740:CDS 35.0%
! AAAACTGAGGAGATTTTGGA+AGG + tig0032685:24079-24098 Msa1449740:CDS 35.0%
CTCAAACGACATTGAATTTG+AGG + tig0032685:24120-24139 Msa1449740:CDS 35.0%
TAGTCCAGGAAAAAATAGTC+TGG + tig0032685:24445-24464 Msa1449740:intron 35.0%
CGGCACATATACAAAATTCA+AGG + tig0032685:24524-24543 Msa1449740:intron 35.0%
ATTGCGATTGGGATTAATCA+AGG - tig0032685:24637-24656 None:intergenic 35.0%
CTAGGAAAATTCATTGCGAT+TGG - tig0032685:24649-24668 None:intergenic 35.0%
GACATATATTCCTGCTCTTT+CGG + tig0032685:24759-24778 Msa1449740:intron 35.0%
TATGCTCCTATTCTAACAAC+TGG + tig0032685:25063-25082 Msa1449740:intron 35.0%
GTTGTAAAACTTGGGGTTAT+AGG + tig0032685:25549-25568 Msa1449740:three_prime_UTR 35.0%
CAAACTAGTGAAGGAAAAAC+TGG - tig0032685:25648-25667 None:intergenic 35.0%
ACAAACAAGCAAACTAGTGA+AGG - tig0032685:25657-25676 None:intergenic 35.0%
!! TTCACTAGTTTGCTTGTTTG+TGG + tig0032685:25656-25675 Msa1449740:three_prime_UTR 35.0%
! AAGATGATGGTGATGAAGTG+AGG - tig0032685:21907-21926 None:intergenic 40.0%
TGAGTTTGGAGAATGATGAG+AGG - tig0032685:21955-21974 None:intergenic 40.0%
! TGAAGATGGTGATGTGAGTT+TGG - tig0032685:21969-21988 None:intergenic 40.0%
!! TTGTTTGGTGATGAACATGG+TGG - tig0032685:22015-22034 None:intergenic 40.0%
CTAGCTAAAAGACCAACAAC+AGG - tig0032685:22139-22158 None:intergenic 40.0%
!!! CTGTTGTTGGTCTTTTAGCT+AGG + tig0032685:22137-22156 Msa1449740:CDS 40.0%
GCTAGGATTATGAGTGATGA+AGG + tig0032685:22154-22173 Msa1449740:CDS 40.0%
AGGATTATGAGTGATGAAGG+TGG + tig0032685:22157-22176 Msa1449740:CDS 40.0%
AGTTTCAAGCAAGAAGAGGA+AGG + tig0032685:22266-22285 Msa1449740:CDS 40.0%
GTTTCAAGCAAGAAGAGGAA+GGG + tig0032685:22267-22286 Msa1449740:CDS 40.0%
AGTGACTTGAGCAACAAACT+TGG + tig0032685:22849-22868 Msa1449740:intron 40.0%
GTGACTTGAGCAACAAACTT+GGG + tig0032685:22850-22869 Msa1449740:intron 40.0%
GCCTTCATTCATTGTAAGGT+TGG - tig0032685:23852-23871 None:intergenic 40.0%
! GAGGTAGATTTTGTGGTAGA+AGG + tig0032685:23903-23922 Msa1449740:intron 40.0%
GTCTAAACGTGTGTCTAACT+TGG + tig0032685:23961-23980 Msa1449740:intron 40.0%
!! TGTTTGTTATGTGTAGGCAG+GGG + tig0032685:23988-24007 Msa1449740:intron 40.0%
ACAGACTTTCATAGCCATGA+TGG + tig0032685:24144-24163 Msa1449740:CDS 40.0%
CTGAGTAAAGCTTTCAGAGA+TGG - tig0032685:24192-24211 None:intergenic 40.0%
AAGTCAAGTACCAACCATGT+TGG + tig0032685:24556-24575 Msa1449740:intron 40.0%
! ACATCTTTGCTATGCCAACA+TGG - tig0032685:24573-24592 None:intergenic 40.0%
!! AAACTGTTCTAGAGAACGTG+TGG + tig0032685:24838-24857 Msa1449740:intron 40.0%
TAGAGAAGGGCAAGACAAAA+AGG + tig0032685:25106-25125 Msa1449740:intron 40.0%
! GCAATCTACGTTTGTTGCTT+CGG + tig0032685:25178-25197 Msa1449740:CDS 40.0%
CTCTCATCTTCTGTCTCTAT+AGG - tig0032685:25211-25230 None:intergenic 40.0%
CTATAGAGACAGAAGATGAG+AGG + tig0032685:25209-25228 Msa1449740:CDS 40.0%
AAAACAAGAGATTCGACGCA+TGG + tig0032685:25273-25292 Msa1449740:CDS 40.0%
ATGGCAGACAAAGTAGAAGA+TGG + tig0032685:25304-25323 Msa1449740:CDS 40.0%
CAAAGTAGAAGATGGAGGTA+TGG + tig0032685:25312-25331 Msa1449740:CDS 40.0%
TCAACAGCTTCCTTTGATAG+AGG - tig0032685:25361-25380 None:intergenic 40.0%
!! TTTGGTGATGAACATGGTGG+TGG - tig0032685:22012-22031 None:intergenic 45.0%
! ATTGGTGCTCTTCCTGTTGT+TGG + tig0032685:22124-22143 Msa1449740:CDS 45.0%
ATGAGTGATGAAGGTGGTGT+TGG + tig0032685:22163-22182 Msa1449740:CDS 45.0%
GCTGAGTTTAGAAGAAGGGT+TGG + tig0032685:22205-22224 Msa1449740:CDS 45.0%
! AGCTGCTACCCTGTTGATTA+TGG + tig0032685:23073-23092 Msa1449740:intron 45.0%
TGGGTATCAATTAGGAGGGT+TGG + tig0032685:23130-23149 Msa1449740:intron 45.0%
GGGTATCAATTAGGAGGGTT+GGG + tig0032685:23131-23150 Msa1449740:intron 45.0%
GGTATCAATTAGGAGGGTTG+GGG + tig0032685:23132-23151 Msa1449740:intron 45.0%
GTATCAATTAGGAGGGTTGG+GGG + tig0032685:23133-23152 Msa1449740:intron 45.0%
AAACCCTGTGGAACGATTCA+GGG + tig0032685:23165-23184 Msa1449740:intron 45.0%
TTACCCTGAATCGTTCCACA+GGG - tig0032685:23171-23190 None:intergenic 45.0%
TTTACCCTGAATCGTTCCAC+AGG - tig0032685:23172-23191 None:intergenic 45.0%
TACCACCCCACGATCAAATT+TGG + tig0032685:23651-23670 Msa1449740:intron 45.0%
ATCCAAATTTGATCGTGGGG+TGG - tig0032685:23656-23675 None:intergenic 45.0%
! TGTTGTTGGCTAGCTGCTAT+TGG + tig0032685:24043-24062 Msa1449740:CDS 45.0%
TGCAGGTCTTCTCAAAACTG+AGG + tig0032685:24066-24085 Msa1449740:CDS 45.0%
!! GAGGAGATTTTGGAAGGAGT+CGG + tig0032685:24085-24104 Msa1449740:CDS 45.0%
!! AGATTTTGGAAGGAGTCGGA+AGG + tig0032685:24089-24108 Msa1449740:CDS 45.0%
CTCTCTTGCTTCATCCATCA+TGG - tig0032685:24161-24180 None:intergenic 45.0%
!! CATGATGGATGAAGCAAGAG+AGG + tig0032685:24159-24178 Msa1449740:CDS 45.0%
! CTTTGCTATGCCAACATGGT+TGG - tig0032685:24569-24588 None:intergenic 45.0%
! CTACGTTTGTTGCTTCGGAA+AGG + tig0032685:25183-25202 Msa1449740:CDS 45.0%
TCGACGCATGGTTAAAGAGA+TGG + tig0032685:25285-25304 Msa1449740:CDS 45.0%
GCAGACAAAGTAGAAGATGG+AGG + tig0032685:25307-25326 Msa1449740:CDS 45.0%
TGCTGCTAAGCCTCTATCAA+AGG + tig0032685:25348-25367 Msa1449740:CDS 45.0%
AGGCTCAAACACCTTGCTTT+AGG - tig0032685:25488-25507 None:intergenic 45.0%
!! AGCAAGGTGTTTGAGCCTTT+TGG + tig0032685:25490-25509 Msa1449740:three_prime_UTR 45.0%
!! TGAGCCTTTTGGCTACTCAT+AGG + tig0032685:25501-25520 Msa1449740:three_prime_UTR 45.0%
!! GAGCCTTTTGGCTACTCATA+GGG + tig0032685:25502-25521 Msa1449740:three_prime_UTR 45.0%
!! AGCCTTTTGGCTACTCATAG+GGG + tig0032685:25503-25522 Msa1449740:three_prime_UTR 45.0%
TTCCCCTATGAGTAGCCAAA+AGG - tig0032685:25508-25527 None:intergenic 45.0%
GAAACCCTGTGGAACGATTC+AGG + tig0032685:23164-23183 Msa1449740:intron 50.0%
TTTGATCGTGGGGTGGTACT+TGG - tig0032685:23649-23668 None:intergenic 50.0%
TTATGTGTAGGCAGGGGATC+AGG + tig0032685:23994-24013 Msa1449740:intron 50.0%
TCGAACCTCCATTGGAACAG+CGG - tig0032685:25140-25159 None:intergenic 50.0%
! TTCTCGACTCGAACCTCCAT+TGG - tig0032685:25148-25167 None:intergenic 50.0%
GATAGAGGCTTAGCAGCATC+TGG - tig0032685:25346-25365 None:intergenic 50.0%
!! GATGAACATGGTGGTGGCTG+TGG - tig0032685:22006-22025 None:intergenic 55.0%
! TGGCTAGCTGCTATTGGTGC+AGG + tig0032685:24049-24068 Msa1449740:CDS 55.0%
TGGAAGGAGTCGGAAGGCTT+CGG + tig0032685:24095-24114 Msa1449740:CDS 55.0%
TCCTGCTCTTTCGGCCTGTT+TGG + tig0032685:24768-24787 Msa1449740:intron 55.0%
TCCAAACAGGCCGAAAGAGC+AGG - tig0032685:24772-24791 None:intergenic 55.0%
CGAACCTCCATTGGAACAGC+GGG - tig0032685:25139-25158 None:intergenic 55.0%
ATTAGGAGGGTTGGGGGTCC+AGG + tig0032685:23139-23158 Msa1449740:intron 60.0%
TTAGGAGGGTTGGGGGTCCA+GGG + tig0032685:23140-23159 Msa1449740:intron 60.0%
CGTTCCACAGGGTTTCACCC+TGG - tig0032685:23160-23179 None:intergenic 60.0%
TGTAGGCAGGGGATCAGGCA+GGG + tig0032685:23999-24018 Msa1449740:intron 60.0%
TGCACCTCCCGCTGTTCCAA+TGG + tig0032685:25129-25148 Msa1449740:CDS 60.0%
ACCTCCCGCTGTTCCAATGG+AGG + tig0032685:25132-25151 Msa1449740:CDS 60.0%
ACCTCCATTGGAACAGCGGG+AGG - tig0032685:25136-25155 None:intergenic 60.0%
GGGTCCAGGGTGAAACCCTG+TGG + tig0032685:23153-23172 Msa1449740:intron 65.0%
GTGTAGGCAGGGGATCAGGC+AGG + tig0032685:23998-24017 Msa1449740:intron 65.0%
GTAGGCAGGGGATCAGGCAG+GGG + tig0032685:24000-24019 Msa1449740:intron 65.0%
Chromosome Type Strat End Strand Name
tig0032685 gene 21818 25715 21818 ID=Msa1449740;Name=Msa1449740
tig0032685 mRNA 21818 25715 21818 ID=Msa1449740-mRNA-1;Parent=Msa1449740;Name=Msa1449740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=72|1|1|1|1|1|3|286|298
tig0032685 exon 21818 22288 21818 ID=Msa1449740-mRNA-1:exon:17100;Parent=Msa1449740-mRNA-1
tig0032685 exon 24004 24180 24004 ID=Msa1449740-mRNA-1:exon:17101;Parent=Msa1449740-mRNA-1
tig0032685 exon 25109 25715 25109 ID=Msa1449740-mRNA-1:exon:17102;Parent=Msa1449740-mRNA-1
tig0032685 five_prime_UTR 21818 21889 21818 ID=Msa1449740-mRNA-1:five_prime_utr;Parent=Msa1449740-mRNA-1
tig0032685 CDS 21890 22288 21890 ID=Msa1449740-mRNA-1:cds;Parent=Msa1449740-mRNA-1
tig0032685 CDS 24004 24180 24004 ID=Msa1449740-mRNA-1:cds;Parent=Msa1449740-mRNA-1
tig0032685 CDS 25109 25429 25109 ID=Msa1449740-mRNA-1:cds;Parent=Msa1449740-mRNA-1
tig0032685 three_prime_UTR 25430 25715 25430 ID=Msa1449740-mRNA-1:three_prime_utr;Parent=Msa1449740-mRNA-1
Gene Sequence

>Msa1449740

ATGGTACTTTCAAACCTCACTTCATCACCATCATCTTCATCACCATATTCACAATTCTTCAACCTCTCATCATTCTCCAAACTCACATCACCATCTTCATCATCACTTCTCTTCCACAGCCACCACCATGTTCATCACCAAACAAAACAACAAACTTCAAAACCCACTACAAATTTCACCATTAAAGCTTACATGGAGAATCCAAACTCATTTTCAAATGTTGTTAGCAAAGTTATTGGTGCTCTTCCTGTTGTTGGTCTTTTAGCTAGGATTATGAGTGATGAAGGTGGTGTTGGTAATGATCTTATTGATTTTGCTGAGTTTAGAAGAAGGGTTGGTAAGAATTGTACTGCTACTGATTCTACTGCTTTTTATCAGTTTCAAGCAAGAAGAGGAAGGGCAGGGGATCAGGCAGGGGATCCTATCTATGTTCTGCTATGTTGTTGGCTAGCTGCTATTGGTGCAGGTCTTCTCAAAACTGAGGAGATTTTGGAAGGAGTCGGAAGGCTTCGGATCTCAAACGACATTGAATTTGAGGAACAGACTTTCATAGCCATGATGGATGAAGCAAGAGAGAGAAGGGCAAGACAAAAAGGTGCACCTCCCGCTGTTCCAATGGAGGTTCGAGTCGAGAAAGCTCTTGATGCAATCTACGTTTGTTGCTTCGGAAAGGATCCTATAGAGACAGAAGATGAGAGGTTGCTGAGTACAATACTTAGTTCAGTTTTTCCATCTGTTCAAAAACAAGAGATTCGACGCATGGTTAAAGAGATGGCAGACAAAGTAGAAGATGGAGGTATGGATTATATTCCAGATGCTGCTAAGCCTCTATCAAAGGAAGCTGTTGAAATGCAAATGAAAGACCTTAACTTTCTCAAACAAAATAGTAATACTTAG

Protein sequence

>Msa1449740

MVLSNLTSSPSSSSPYSQFFNLSSFSKLTSPSSSSLLFHSHHHVHHQTKQQTSKPTTNFTIKAYMENPNSFSNVVSKVIGALPVVGLLARIMSDEGGVGNDLIDFAEFRRRVGKNCTATDSTAFYQFQARRGRAGDQAGDPIYVLLCCWLAAIGAGLLKTEEILEGVGRLRISNDIEFEEQTFIAMMDEARERRARQKGAPPAVPMEVRVEKALDAIYVCCFGKDPIETEDERLLSTILSSVFPSVQKQEIRRMVKEMADKVEDGGMDYIPDAAKPLSKEAVEMQMKDLNFLKQNSNT*