AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440180 MtrunA17_Chr6g0450831 98.000 300 4 1 1 298 1 300 0.0 610
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440180 AT3G55250.1 54.333 300 106 6 1 296 2 274 1.06e-106 311

Find 73 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCCATGTAAGCTTTAA+TGG 0.159444 tig0029037:-20764 None:intergenic
TCTCAAAACTGAGGAGATTT+TGG 0.193705 tig0029037:+22773 Msa1440180:CDS
ACAACATTTGAAAATGAGTT+TGG 0.277068 tig0029037:-20787 None:intergenic
AGGCTCAAACACCTTGCTTT+AGG 0.281011 tig0029037:-24183 None:intergenic
AGCAAGGTGTTTGAGCCTTT+TGG 0.286437 tig0029037:+24188 Msa1440180:three_prime_UTR
AATGTTGTTAGCAAAGTTAT+TGG 0.287367 tig0029037:+20802 Msa1440180:CDS
TGTTGTTGGCTAGCTGCTAT+TGG 0.290097 tig0029037:+22741 Msa1440180:CDS
TTCACTAGTTTGCTTGTTTG+TGG 0.315318 tig0029037:+24354 Msa1440180:three_prime_UTR
GCAATCTACGTTTGTTGCTT+CGG 0.330000 tig0029037:+23876 Msa1440180:CDS
GTTGTAAAACTTGGGGTTAT+AGG 0.331320 tig0029037:+24247 Msa1440180:three_prime_UTR
TATATGTTGTGTTATCTTGT+TGG 0.347247 tig0029037:-20513 None:intergenic
TGAAGATGGTGATGTGAGTT+TGG 0.354292 tig0029037:-20662 None:intergenic
ATTGGTGCTCTTCCTGTTGT+TGG 0.376523 tig0029037:+20820 Msa1440180:CDS
TTGATATACAATGCATTGAA+TGG 0.390085 tig0029037:+24150 Msa1440180:three_prime_UTR
TAGAGAAGGGCAAGACAAAA+AGG 0.394828 tig0029037:+23804 Msa1440180:intron
TCTATGTTCTGCTATGTTGT+TGG 0.398804 tig0029037:+22727 Msa1440180:CDS
TCAACAGCTTCCTTTGATAG+AGG 0.406723 tig0029037:-24056 None:intergenic
CTCTCATCTTCTGTCTCTAT+AGG 0.411361 tig0029037:-23906 None:intergenic
TACTAGATGTTGTAAAACTT+GGG 0.414953 tig0029037:+24239 Msa1440180:three_prime_UTR
GATAGAGGCTTAGCAGCATC+TGG 0.416100 tig0029037:-24041 None:intergenic
TTCTCGACTCGAACCTCCAT+TGG 0.422859 tig0029037:-23843 None:intergenic
TGGAAGGAGTCGGAAGGCTT+CGG 0.426849 tig0029037:+22793 Msa1440180:CDS
TTTAATGGTGAAATTTGTAG+TGG 0.432350 tig0029037:-20749 None:intergenic
TTATGTGTAGGCAGGGGATC+AGG 0.435584 tig0029037:+22692 Msa1440180:intron
CAACATAGCAGAACATAGAT+AGG 0.442461 tig0029037:-22723 None:intergenic
CTCAAACGACATTGAATTTG+AGG 0.443655 tig0029037:+22818 Msa1440180:CDS
AGATGATACAAAAGATTTCA+AGG 0.444324 tig0029037:+24384 Msa1440180:three_prime_UTR
ATACTAGATGTTGTAAAACT+TGG 0.444757 tig0029037:+24238 Msa1440180:three_prime_UTR
TGGCTAGCTGCTATTGGTGC+AGG 0.446908 tig0029037:+22747 Msa1440180:CDS
AGGTTGAAGAATTGTGAATA+TGG 0.458125 tig0029037:-20628 None:intergenic
TTTCACCATTAAAGCTTACA+TGG 0.460009 tig0029037:+20759 Msa1440180:CDS
GTGTAGGCAGGGGATCAGGC+AGG 0.461380 tig0029037:+22696 Msa1440180:intron
GCTAGGATTATGAGTGATGA+AGG 0.474789 tig0029037:+20850 Msa1440180:CDS
TGCACCTCCCGCTGTTCCAA+TGG 0.475703 tig0029037:+23827 Msa1440180:CDS
GATGAACATGGTGGTGGCTG+TGG 0.501553 tig0029037:-20699 None:intergenic
CTCTCTTGCTTCATCCATCA+TGG 0.504937 tig0029037:-22856 None:intergenic
ATGAGTGATGAAGGTGGTGT+TGG 0.509665 tig0029037:+20859 Msa1440180:CDS
CTAGCTAAAAGACCAACAAC+AGG 0.516749 tig0029037:-20832 None:intergenic
CGAACCTCCATTGGAACAGC+GGG 0.522801 tig0029037:-23834 None:intergenic
GTTTGAAAGTACCATGTTTG+TGG 0.523489 tig0029037:-20578 None:intergenic
ATGGCAGACAAAGTAGAAGA+TGG 0.525072 tig0029037:+24002 Msa1440180:CDS
GCTGAGTTTAGAAGAAGGGT+TGG 0.525341 tig0029037:+20901 Msa1440180:CDS
TTTGGTGATGAACATGGTGG+TGG 0.527219 tig0029037:-20705 None:intergenic
GTAGGCAGGGGATCAGGCAG+GGG 0.535398 tig0029037:+22698 Msa1440180:intron
CAAAGTAGAAGATGGAGGTA+TGG 0.536962 tig0029037:+24010 Msa1440180:CDS
CTACGTTTGTTGCTTCGGAA+AGG 0.538343 tig0029037:+23881 Msa1440180:CDS
TGTAGGCAGGGGATCAGGCA+GGG 0.548433 tig0029037:+22697 Msa1440180:intron
TATCAGTTTCAAGCAAGAAG+AGG 0.555632 tig0029037:+20958 Msa1440180:CDS
TTCCCCTATGAGTAGCCAAA+AGG 0.559654 tig0029037:-24203 None:intergenic
AAAACAAGAGATTCGACGCA+TGG 0.562381 tig0029037:+23971 Msa1440180:CDS
AGTTTCAAGCAAGAAGAGGA+AGG 0.571685 tig0029037:+20962 Msa1440180:CDS
TGCTGCTAAGCCTCTATCAA+AGG 0.573332 tig0029037:+24046 Msa1440180:CDS
TCGACGCATGGTTAAAGAGA+TGG 0.576065 tig0029037:+23983 Msa1440180:CDS
GAATTATATTTCCTAAAGCA+AGG 0.579582 tig0029037:+24172 Msa1440180:three_prime_UTR
ACCTCCCGCTGTTCCAATGG+AGG 0.583040 tig0029037:+23830 Msa1440180:CDS
ACCTCCATTGGAACAGCGGG+AGG 0.583730 tig0029037:-23831 None:intergenic
TTAATGGTGAAATTTGTAGT+GGG 0.585415 tig0029037:-20748 None:intergenic
ACTAGATGTTGTAAAACTTG+GGG 0.590076 tig0029037:+24240 Msa1440180:three_prime_UTR
TCGAACCTCCATTGGAACAG+CGG 0.593033 tig0029037:-23835 None:intergenic
GTTTCAAGCAAGAAGAGGAA+GGG 0.598303 tig0029037:+20963 Msa1440180:CDS
AAGAGAAGTGATGATGAAGA+TGG 0.607751 tig0029037:-20676 None:intergenic
ACAAACAAGCAAACTAGTGA+AGG 0.614970 tig0029037:-24352 None:intergenic
CATGATGGATGAAGCAAGAG+AGG 0.615451 tig0029037:+22857 Msa1440180:CDS
AAGATGATGGTGATGAAGTG+AGG 0.616181 tig0029037:-20600 None:intergenic
ACAGACTTTCATAGCCATGA+TGG 0.617255 tig0029037:+22842 Msa1440180:CDS
CTATAGAGACAGAAGATGAG+AGG 0.617615 tig0029037:+23907 Msa1440180:CDS
TGAGTTTGGAGAATGATGAG+AGG 0.632202 tig0029037:-20648 None:intergenic
GAATATGGTGATGAAGATGA+TGG 0.648564 tig0029037:-20613 None:intergenic
TTGTTTGGTGATGAACATGG+TGG 0.668676 tig0029037:-20708 None:intergenic
ACACAACATATATAAACGAG+AGG 0.669113 tig0029037:+20524 Msa1440180:five_prime_UTR
TGCAGGTCTTCTCAAAACTG+AGG 0.678847 tig0029037:+22764 Msa1440180:CDS
GCAGACAAAGTAGAAGATGG+AGG 0.689858 tig0029037:+24005 Msa1440180:CDS
AGGATTATGAGTGATGAAGG+TGG 0.737229 tig0029037:+20853 Msa1440180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAATTAGAGTTTAA+TGG - tig0029037:21377-21396 None:intergenic 10.0%
!!! ATTAAACTCTAATTTTATAA+AGG + tig0029037:21376-21395 Msa1440180:intron 10.0%
!! AAAGATGCAAAATTTAATAA+AGG - tig0029037:21013-21032 None:intergenic 15.0%
!! TAACCTTAATCAAATTATAA+GGG - tig0029037:22161-22180 None:intergenic 15.0%
!!! TTAAGCTATTTTTATAACAA+AGG - tig0029037:23674-23693 None:intergenic 15.0%
!! TCTCATTCACATAAAATAAA+AGG - tig0029037:21185-21204 None:intergenic 20.0%
!! ATAAAATTAGAGTTTAATGG+AGG - tig0029037:21374-21393 None:intergenic 20.0%
!!! TCTAAAGTTAAGTGTATTTT+TGG + tig0029037:21419-21438 Msa1440180:intron 20.0%
!!! AAAATTGATTCTAACTAGTT+TGG - tig0029037:21664-21683 None:intergenic 20.0%
!!! AAACTAGTTAGAATCAATTT+TGG + tig0029037:21663-21682 Msa1440180:intron 20.0%
!! AATAGTTGTATCATTTGATA+AGG + tig0029037:22019-22038 Msa1440180:intron 20.0%
!! AAATAACATGAAGTAACAAT+TGG + tig0029037:22059-22078 Msa1440180:intron 20.0%
!! ATGCTCAAAATTTAATCTTT+GGG + tig0029037:22132-22151 Msa1440180:intron 20.0%
!! TAACCCTTATAATTTGATTA+AGG + tig0029037:22155-22174 Msa1440180:intron 20.0%
!! CTAACCTTAATCAAATTATA+AGG - tig0029037:22162-22181 None:intergenic 20.0%
!! TGTAACCTTATAATTGATTA+AGG + tig0029037:22292-22311 Msa1440180:intron 20.0%
!! AAAGATTCATATTTGATTGT+GGG - tig0029037:22467-22486 None:intergenic 20.0%
!! AATCAAATATGAATCTTTCT+TGG + tig0029037:22469-22488 Msa1440180:intron 20.0%
!! ATCAAATATGAATCTTTCTT+GGG + tig0029037:22470-22489 Msa1440180:intron 20.0%
!!! TATATTTGATTTGTAGACTA+TGG + tig0029037:23037-23056 Msa1440180:intron 20.0%
!!! TCCTTTTTAATCTACATTTA+GGG - tig0029037:23099-23118 None:intergenic 20.0%
!!! TTCCTTTTTAATCTACATTT+AGG - tig0029037:23100-23119 None:intergenic 20.0%
!! AATAGGAATGATCTAAATAT+TGG + tig0029037:23303-23322 Msa1440180:intron 20.0%
!! ATAGGAATGATCTAAATATT+GGG + tig0029037:23304-23323 Msa1440180:intron 20.0%
!!! TATTTTGTTTGAGAAAGTTA+AGG - tig0029037:24097-24116 None:intergenic 20.0%
!!! TTGAAGTTTGTTGTTTTGTT+TGG - tig0029037:20726-20745 None:intergenic 25.0%
! TTAATGGTGAAATTTGTAGT+GGG - tig0029037:20751-20770 None:intergenic 25.0%
! TTTAATGGTGAAATTTGTAG+TGG - tig0029037:20752-20771 None:intergenic 25.0%
! ACAACATTTGAAAATGAGTT+TGG - tig0029037:20790-20809 None:intergenic 25.0%
! AATGTTGTTAGCAAAGTTAT+TGG + tig0029037:20802-20821 Msa1440180:CDS 25.0%
!! GTTACAATTTTTACCTATTG+AGG + tig0029037:21045-21064 Msa1440180:intron 25.0%
!!! AACCTAATGTTGCATTTTTT+TGG + tig0029037:21097-21116 Msa1440180:intron 25.0%
! AACCAAAAAAATGCAACATT+AGG - tig0029037:21102-21121 None:intergenic 25.0%
!!! TAGTTATTTTTTGACTTGTG+AGG + tig0029037:21127-21146 Msa1440180:intron 25.0%
!!! TGTAAACTAGTTTTACACTT+AGG + tig0029037:21218-21237 Msa1440180:intron 25.0%
! TCCAATTAGAAATGAGAATT+AGG + tig0029037:21241-21260 Msa1440180:intron 25.0%
! ACCTAATTCTCATTTCTAAT+TGG - tig0029037:21245-21264 None:intergenic 25.0%
! GAAAGATGATGTGAATTTAT+TGG + tig0029037:21313-21332 Msa1440180:intron 25.0%
!! ATAAAGGCAATTTTGCATTT+TGG + tig0029037:21392-21411 Msa1440180:intron 25.0%
!! TAAAGGCAATTTTGCATTTT+GGG + tig0029037:21393-21412 Msa1440180:intron 25.0%
!!! TGATTTTGAGTGAATTGATT+CGG + tig0029037:21457-21476 Msa1440180:intron 25.0%
!!! TGATTCGGTAAAATTGATTT+TGG + tig0029037:21472-21491 Msa1440180:intron 25.0%
!! AGTTTAAAGTGAGTTATGTT+TGG + tig0029037:21509-21528 Msa1440180:intron 25.0%
!! GTTTAAAGTGAGTTATGTTT+GGG + tig0029037:21510-21529 Msa1440180:intron 25.0%
!!! TTAGAATCAATTTTGGTCAT+CGG + tig0029037:21670-21689 Msa1440180:intron 25.0%
! AATATCAACCATAATCAACA+GGG - tig0029037:21782-21801 None:intergenic 25.0%
!! CAAAGATTAAATTTTGAGCA+TGG - tig0029037:22133-22152 None:intergenic 25.0%
! CATGCTCAAAATTTAATCTT+TGG + tig0029037:22131-22150 Msa1440180:intron 25.0%
! AAGATGCAAAATTTGAACTT+GGG - tig0029037:22214-22233 None:intergenic 25.0%
!! AAGTTCAAATTTTGCATCTT+GGG + tig0029037:22214-22233 Msa1440180:intron 25.0%
! TATAGTTTGATACCTAAATG+AGG + tig0029037:22242-22261 Msa1440180:intron 25.0%
! ACCTTATAATTGATTAAGGT+TGG + tig0029037:22296-22315 Msa1440180:intron 25.0%
! TTGTTCTGTATAGTTAAATG+AGG + tig0029037:22375-22394 Msa1440180:intron 25.0%
! GAAAGATTCATATTTGATTG+TGG - tig0029037:22468-22487 None:intergenic 25.0%
!! TCTTTTCCTTTTTATTCTTG+AGG + tig0029037:22582-22601 Msa1440180:intron 25.0%
! AATCTACCTCAAGAATAAAA+AGG - tig0029037:22591-22610 None:intergenic 25.0%
! TTCATGTGCTAAAATAGAAA+TGG + tig0029037:22632-22651 Msa1440180:intron 25.0%
! ACCCTAAATGTAGATTAAAA+AGG + tig0029037:23095-23114 Msa1440180:intron 25.0%
!! TGATATTCAACACGATATTT+TGG - tig0029037:23193-23212 None:intergenic 25.0%
!! CAACTTGATAGATTTAGAAT+CGG + tig0029037:23413-23432 Msa1440180:intron 25.0%
! CTAGAGAACTTATGAAAATA+TGG - tig0029037:23596-23615 None:intergenic 25.0%
!! CATATTTTCATAAGTTCTCT+AGG + tig0029037:23594-23613 Msa1440180:intron 25.0%
!! AATTTTCCAGTTGTTAGAAT+AGG - tig0029037:23770-23789 None:intergenic 25.0%
! TTGATATACAATGCATTGAA+TGG + tig0029037:24150-24169 Msa1440180:three_prime_UTR 25.0%
! GAATTATATTTCCTAAAGCA+AGG + tig0029037:24172-24191 Msa1440180:three_prime_UTR 25.0%
! ATACTAGATGTTGTAAAACT+TGG + tig0029037:24238-24257 Msa1440180:three_prime_UTR 25.0%
! TACTAGATGTTGTAAAACTT+GGG + tig0029037:24239-24258 Msa1440180:three_prime_UTR 25.0%
! AGATGATACAAAAGATTTCA+AGG + tig0029037:24384-24403 Msa1440180:three_prime_UTR 25.0%
ACACAACATATATAAACGAG+AGG + tig0029037:20524-20543 Msa1440180:five_prime_UTR 30.0%
CAAAAACAAAACCACAAACA+TGG + tig0029037:20567-20586 Msa1440180:exon 30.0%
AGGTTGAAGAATTGTGAATA+TGG - tig0029037:20631-20650 None:intergenic 30.0%
TTTCACCATTAAAGCTTACA+TGG + tig0029037:20759-20778 Msa1440180:CDS 30.0%
! ATTCTCCATGTAAGCTTTAA+TGG - tig0029037:20767-20786 None:intergenic 30.0%
! ATTTTGCTGAGTTTAGAAGA+AGG + tig0029037:20896-20915 Msa1440180:CDS 30.0%
! TTTTGCTGAGTTTAGAAGAA+GGG + tig0029037:20897-20916 Msa1440180:CDS 30.0%
GAACATGAATTAACCTCAAT+AGG - tig0029037:21061-21080 None:intergenic 30.0%
!!! TATTTTTTGACTTGTGAGGT+TGG + tig0029037:21131-21150 Msa1440180:intron 30.0%
GATGTGAATTTATTGGATGA+CGG + tig0029037:21320-21339 Msa1440180:intron 30.0%
ACCTTATAGTTGTCAGATTA+CGG + tig0029037:21728-21747 Msa1440180:intron 30.0%
GAATATCAACCATAATCAAC+AGG - tig0029037:21783-21802 None:intergenic 30.0%
ATTGATACCCAACTAACAAA+TGG - tig0029037:21819-21838 None:intergenic 30.0%
TTGTTAGTTGGGTATCAATT+AGG + tig0029037:21820-21839 Msa1440180:intron 30.0%
AACCATAAATCACTACATAC+TGG + tig0029037:21935-21954 Msa1440180:intron 30.0%
TTCCAGTATGTAGTGATTTA+TGG - tig0029037:21940-21959 None:intergenic 30.0%
GTAAGAGAAATAAGCACAAT+TGG + tig0029037:21981-22000 Msa1440180:intron 30.0%
CAACTATTGATCATAGAGTT+TGG - tig0029037:22007-22026 None:intergenic 30.0%
AGATGCAAAATTTGAACTTG+GGG - tig0029037:22213-22232 None:intergenic 30.0%
CAAGATGCAAAATTTGAACT+TGG - tig0029037:22215-22234 None:intergenic 30.0%
! CAAGTTCAAATTTTGCATCT+TGG + tig0029037:22213-22232 Msa1440180:intron 30.0%
GCCAACCTTAATCAATTATA+AGG - tig0029037:22300-22319 None:intergenic 30.0%
AATATCCAAATTTGATCGTG+GGG - tig0029037:22357-22376 None:intergenic 30.0%
CAATATCCAAATTTGATCGT+GGG - tig0029037:22358-22377 None:intergenic 30.0%
ACAATATCCAAATTTGATCG+TGG - tig0029037:22359-22378 None:intergenic 30.0%
! GTTAAATGAGGTTGATTTCA+TGG + tig0029037:22387-22406 Msa1440180:intron 30.0%
ATTCATATTTGATTGTGGGA+TGG - tig0029037:22463-22482 None:intergenic 30.0%
! TGGGATTTAAAGTTGTCAAA+TGG + tig0029037:22489-22508 Msa1440180:intron 30.0%
! GGGATTTAAAGTTGTCAAAT+GGG + tig0029037:22490-22509 Msa1440180:intron 30.0%
CAAGTTTGAGTGATTTCATT+CGG + tig0029037:22514-22533 Msa1440180:intron 30.0%
!! ATTAGCCTTCATTCATTGTA+AGG - tig0029037:22554-22573 None:intergenic 30.0%
! TATTCTTGAGGTAGATTTTG+TGG + tig0029037:22594-22613 Msa1440180:intron 30.0%
AATTAGTGTAAACTTAGTCC+AGG + tig0029037:23129-23148 Msa1440180:intron 30.0%
!!! AAAACCAGACTATTTTTTCC+TGG - tig0029037:23150-23169 None:intergenic 30.0%
!!! TTTTGGAGCTCGAAATTTTA+AGG - tig0029037:23176-23195 None:intergenic 30.0%
ATCGTGTTGAATATCAATTC+TGG + tig0029037:23197-23216 Msa1440180:intron 30.0%
GTTGAATATCAATTCTGGAT+CGG + tig0029037:23202-23221 Msa1440180:intron 30.0%
GATGTTCGTTTGTAACTAAT+AGG + tig0029037:23286-23305 Msa1440180:intron 30.0%
TAGGAAAATTCATTGCGATT+GGG - tig0029037:23346-23365 None:intergenic 30.0%
GAAATGGATGAAACTTTACT+AGG - tig0029037:23365-23384 None:intergenic 30.0%
! GCAATTTTCATTCTACGAAA+TGG - tig0029037:23381-23400 None:intergenic 30.0%
GGAATATATGTCATACATCT+TGG - tig0029037:23449-23468 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - tig0029037:23483-23502 None:intergenic 30.0%
AATATGGTGAAAACAGCTTA+TGG - tig0029037:23580-23599 None:intergenic 30.0%
TATGTTGAACACTATAGAGA+AGG + tig0029037:23790-23809 Msa1440180:intron 30.0%
ATGTTGAACACTATAGAGAA+GGG + tig0029037:23791-23810 Msa1440180:intron 30.0%
!!! ATCTCTTGTTTTTGAACAGA+TGG - tig0029037:23963-23982 None:intergenic 30.0%
ACTAGATGTTGTAAAACTTG+GGG + tig0029037:24240-24259 Msa1440180:three_prime_UTR 30.0%
!! GTTTGAAAGTACCATGTTTG+TGG - tig0029037:20581-20600 None:intergenic 35.0%
! GAATATGGTGATGAAGATGA+TGG - tig0029037:20616-20635 None:intergenic 35.0%
! AAGAGAAGTGATGATGAAGA+TGG - tig0029037:20679-20698 None:intergenic 35.0%
!!! GTTTTGTTTGGTGATGAACA+TGG - tig0029037:20714-20733 None:intergenic 35.0%
TATCAGTTTCAAGCAAGAAG+AGG + tig0029037:20958-20977 Msa1440180:CDS 35.0%
! TCATGTAGAATCGATTCTAG+AGG + tig0029037:21613-21632 Msa1440180:intron 35.0%
ACCGTAATCTGACAACTATA+AGG - tig0029037:21732-21751 None:intergenic 35.0%
! GGTTGATATTCGCTAATAAG+TGG + tig0029037:21792-21811 Msa1440180:intron 35.0%
! TAAGTGGTCCATTTGTTAGT+TGG + tig0029037:21808-21827 Msa1440180:intron 35.0%
! AAGTGGTCCATTTGTTAGTT+GGG + tig0029037:21809-21828 Msa1440180:intron 35.0%
TTAGTTGGGTATCAATTAGG+AGG + tig0029037:21823-21842 Msa1440180:intron 35.0%
TAGTTGGGTATCAATTAGGA+GGG + tig0029037:21824-21843 Msa1440180:intron 35.0%
TTCAGGGTAAACTTGTAATC+TGG + tig0029037:21879-21898 Msa1440180:intron 35.0%
GCATGAAATCAACCTCATTT+AGG - tig0029037:22257-22276 None:intergenic 35.0%
ACCAACCTTACAATGAATGA+AGG + tig0029037:22546-22565 Msa1440180:intron 35.0%
!! GGTGTTTGTTTGTTATGTGT+AGG + tig0029037:22680-22699 Msa1440180:intron 35.0%
!! TTTGTTTGTTATGTGTAGGC+AGG + tig0029037:22684-22703 Msa1440180:intron 35.0%
!! TTGTTTGTTATGTGTAGGCA+GGG + tig0029037:22685-22704 Msa1440180:intron 35.0%
CAACATAGCAGAACATAGAT+AGG - tig0029037:22726-22745 None:intergenic 35.0%
TCTATGTTCTGCTATGTTGT+TGG + tig0029037:22727-22746 Msa1440180:CDS 35.0%
! TCTCAAAACTGAGGAGATTT+TGG + tig0029037:22773-22792 Msa1440180:CDS 35.0%
! AAAACTGAGGAGATTTTGGA+AGG + tig0029037:22777-22796 Msa1440180:CDS 35.0%
CTCAAACGACATTGAATTTG+AGG + tig0029037:22818-22837 Msa1440180:CDS 35.0%
TAGTCCAGGAAAAAATAGTC+TGG + tig0029037:23143-23162 Msa1440180:intron 35.0%
CGGCACATATACAAAATTCA+AGG + tig0029037:23222-23241 Msa1440180:intron 35.0%
ATTGCGATTGGGATTAATCA+AGG - tig0029037:23335-23354 None:intergenic 35.0%
CTAGGAAAATTCATTGCGAT+TGG - tig0029037:23347-23366 None:intergenic 35.0%
GACATATATTCCTGCTCTTT+CGG + tig0029037:23457-23476 Msa1440180:intron 35.0%
TATGCTCCTATTCTAACAAC+TGG + tig0029037:23761-23780 Msa1440180:intron 35.0%
GTTGTAAAACTTGGGGTTAT+AGG + tig0029037:24247-24266 Msa1440180:three_prime_UTR 35.0%
CAAACTAGTGAAGGAAAAAC+TGG - tig0029037:24346-24365 None:intergenic 35.0%
ACAAACAAGCAAACTAGTGA+AGG - tig0029037:24355-24374 None:intergenic 35.0%
!! TTCACTAGTTTGCTTGTTTG+TGG + tig0029037:24354-24373 Msa1440180:three_prime_UTR 35.0%
! AAGATGATGGTGATGAAGTG+AGG - tig0029037:20603-20622 None:intergenic 40.0%
TGAGTTTGGAGAATGATGAG+AGG - tig0029037:20651-20670 None:intergenic 40.0%
! TGAAGATGGTGATGTGAGTT+TGG - tig0029037:20665-20684 None:intergenic 40.0%
!! TTGTTTGGTGATGAACATGG+TGG - tig0029037:20711-20730 None:intergenic 40.0%
CTAGCTAAAAGACCAACAAC+AGG - tig0029037:20835-20854 None:intergenic 40.0%
!!! CTGTTGTTGGTCTTTTAGCT+AGG + tig0029037:20833-20852 Msa1440180:CDS 40.0%
GCTAGGATTATGAGTGATGA+AGG + tig0029037:20850-20869 Msa1440180:CDS 40.0%
AGGATTATGAGTGATGAAGG+TGG + tig0029037:20853-20872 Msa1440180:CDS 40.0%
AGTTTCAAGCAAGAAGAGGA+AGG + tig0029037:20962-20981 Msa1440180:CDS 40.0%
GTTTCAAGCAAGAAGAGGAA+GGG + tig0029037:20963-20982 Msa1440180:CDS 40.0%
AGTGACTTGAGCAACAAACT+TGG + tig0029037:21547-21566 Msa1440180:intron 40.0%
GTGACTTGAGCAACAAACTT+GGG + tig0029037:21548-21567 Msa1440180:intron 40.0%
GCCTTCATTCATTGTAAGGT+TGG - tig0029037:22550-22569 None:intergenic 40.0%
! GAGGTAGATTTTGTGGTAGA+AGG + tig0029037:22601-22620 Msa1440180:intron 40.0%
GTCTAAACGTGTGTCTAACT+TGG + tig0029037:22659-22678 Msa1440180:intron 40.0%
!! TGTTTGTTATGTGTAGGCAG+GGG + tig0029037:22686-22705 Msa1440180:intron 40.0%
ACAGACTTTCATAGCCATGA+TGG + tig0029037:22842-22861 Msa1440180:CDS 40.0%
CTGAGTAAAGCTTTCAGAGA+TGG - tig0029037:22890-22909 None:intergenic 40.0%
AAGTCAAGTACCAACCATGT+TGG + tig0029037:23254-23273 Msa1440180:intron 40.0%
! ACATCTTTGCTATGCCAACA+TGG - tig0029037:23271-23290 None:intergenic 40.0%
!! AAACTGTTCTAGAGAACGTG+TGG + tig0029037:23536-23555 Msa1440180:intron 40.0%
TAGAGAAGGGCAAGACAAAA+AGG + tig0029037:23804-23823 Msa1440180:intron 40.0%
! GCAATCTACGTTTGTTGCTT+CGG + tig0029037:23876-23895 Msa1440180:CDS 40.0%
CTCTCATCTTCTGTCTCTAT+AGG - tig0029037:23909-23928 None:intergenic 40.0%
CTATAGAGACAGAAGATGAG+AGG + tig0029037:23907-23926 Msa1440180:CDS 40.0%
AAAACAAGAGATTCGACGCA+TGG + tig0029037:23971-23990 Msa1440180:CDS 40.0%
ATGGCAGACAAAGTAGAAGA+TGG + tig0029037:24002-24021 Msa1440180:CDS 40.0%
CAAAGTAGAAGATGGAGGTA+TGG + tig0029037:24010-24029 Msa1440180:CDS 40.0%
TCAACAGCTTCCTTTGATAG+AGG - tig0029037:24059-24078 None:intergenic 40.0%
!! TTTGGTGATGAACATGGTGG+TGG - tig0029037:20708-20727 None:intergenic 45.0%
! ATTGGTGCTCTTCCTGTTGT+TGG + tig0029037:20820-20839 Msa1440180:CDS 45.0%
ATGAGTGATGAAGGTGGTGT+TGG + tig0029037:20859-20878 Msa1440180:CDS 45.0%
GCTGAGTTTAGAAGAAGGGT+TGG + tig0029037:20901-20920 Msa1440180:CDS 45.0%
! AGCTGCTACCCTGTTGATTA+TGG + tig0029037:21771-21790 Msa1440180:intron 45.0%
TGGGTATCAATTAGGAGGGT+TGG + tig0029037:21828-21847 Msa1440180:intron 45.0%
GGGTATCAATTAGGAGGGTT+GGG + tig0029037:21829-21848 Msa1440180:intron 45.0%
GGTATCAATTAGGAGGGTTG+GGG + tig0029037:21830-21849 Msa1440180:intron 45.0%
GTATCAATTAGGAGGGTTGG+GGG + tig0029037:21831-21850 Msa1440180:intron 45.0%
AAACCCTGTGGAACGATTCA+GGG + tig0029037:21863-21882 Msa1440180:intron 45.0%
TTACCCTGAATCGTTCCACA+GGG - tig0029037:21869-21888 None:intergenic 45.0%
TTTACCCTGAATCGTTCCAC+AGG - tig0029037:21870-21889 None:intergenic 45.0%
TACCACCCCACGATCAAATT+TGG + tig0029037:22349-22368 Msa1440180:intron 45.0%
ATCCAAATTTGATCGTGGGG+TGG - tig0029037:22354-22373 None:intergenic 45.0%
! TGTTGTTGGCTAGCTGCTAT+TGG + tig0029037:22741-22760 Msa1440180:CDS 45.0%
TGCAGGTCTTCTCAAAACTG+AGG + tig0029037:22764-22783 Msa1440180:CDS 45.0%
!! GAGGAGATTTTGGAAGGAGT+CGG + tig0029037:22783-22802 Msa1440180:CDS 45.0%
!! AGATTTTGGAAGGAGTCGGA+AGG + tig0029037:22787-22806 Msa1440180:CDS 45.0%
CTCTCTTGCTTCATCCATCA+TGG - tig0029037:22859-22878 None:intergenic 45.0%
!! CATGATGGATGAAGCAAGAG+AGG + tig0029037:22857-22876 Msa1440180:CDS 45.0%
! CTTTGCTATGCCAACATGGT+TGG - tig0029037:23267-23286 None:intergenic 45.0%
! CTACGTTTGTTGCTTCGGAA+AGG + tig0029037:23881-23900 Msa1440180:CDS 45.0%
TCGACGCATGGTTAAAGAGA+TGG + tig0029037:23983-24002 Msa1440180:CDS 45.0%
GCAGACAAAGTAGAAGATGG+AGG + tig0029037:24005-24024 Msa1440180:CDS 45.0%
TGCTGCTAAGCCTCTATCAA+AGG + tig0029037:24046-24065 Msa1440180:CDS 45.0%
AGGCTCAAACACCTTGCTTT+AGG - tig0029037:24186-24205 None:intergenic 45.0%
!! AGCAAGGTGTTTGAGCCTTT+TGG + tig0029037:24188-24207 Msa1440180:three_prime_UTR 45.0%
!! TGAGCCTTTTGGCTACTCAT+AGG + tig0029037:24199-24218 Msa1440180:three_prime_UTR 45.0%
!! GAGCCTTTTGGCTACTCATA+GGG + tig0029037:24200-24219 Msa1440180:three_prime_UTR 45.0%
!! AGCCTTTTGGCTACTCATAG+GGG + tig0029037:24201-24220 Msa1440180:three_prime_UTR 45.0%
TTCCCCTATGAGTAGCCAAA+AGG - tig0029037:24206-24225 None:intergenic 45.0%
GAAACCCTGTGGAACGATTC+AGG + tig0029037:21862-21881 Msa1440180:intron 50.0%
TTTGATCGTGGGGTGGTACT+TGG - tig0029037:22347-22366 None:intergenic 50.0%
TTATGTGTAGGCAGGGGATC+AGG + tig0029037:22692-22711 Msa1440180:intron 50.0%
TCGAACCTCCATTGGAACAG+CGG - tig0029037:23838-23857 None:intergenic 50.0%
! TTCTCGACTCGAACCTCCAT+TGG - tig0029037:23846-23865 None:intergenic 50.0%
GATAGAGGCTTAGCAGCATC+TGG - tig0029037:24044-24063 None:intergenic 50.0%
!! GATGAACATGGTGGTGGCTG+TGG - tig0029037:20702-20721 None:intergenic 55.0%
! TGGCTAGCTGCTATTGGTGC+AGG + tig0029037:22747-22766 Msa1440180:CDS 55.0%
TGGAAGGAGTCGGAAGGCTT+CGG + tig0029037:22793-22812 Msa1440180:CDS 55.0%
TCCTGCTCTTTCGGCCTGTT+TGG + tig0029037:23466-23485 Msa1440180:intron 55.0%
TCCAAACAGGCCGAAAGAGC+AGG - tig0029037:23470-23489 None:intergenic 55.0%
CGAACCTCCATTGGAACAGC+GGG - tig0029037:23837-23856 None:intergenic 55.0%
ATTAGGAGGGTTGGGGGTCC+AGG + tig0029037:21837-21856 Msa1440180:intron 60.0%
TTAGGAGGGTTGGGGGTCCA+GGG + tig0029037:21838-21857 Msa1440180:intron 60.0%
CGTTCCACAGGGTTTCACCC+TGG - tig0029037:21858-21877 None:intergenic 60.0%
TGTAGGCAGGGGATCAGGCA+GGG + tig0029037:22697-22716 Msa1440180:intron 60.0%
TGCACCTCCCGCTGTTCCAA+TGG + tig0029037:23827-23846 Msa1440180:CDS 60.0%
ACCTCCCGCTGTTCCAATGG+AGG + tig0029037:23830-23849 Msa1440180:CDS 60.0%
ACCTCCATTGGAACAGCGGG+AGG - tig0029037:23834-23853 None:intergenic 60.0%
GGGTCCAGGGTGAAACCCTG+TGG + tig0029037:21851-21870 Msa1440180:intron 65.0%
GTGTAGGCAGGGGATCAGGC+AGG + tig0029037:22696-22715 Msa1440180:intron 65.0%
GTAGGCAGGGGATCAGGCAG+GGG + tig0029037:22698-22717 Msa1440180:intron 65.0%
Chromosome Type Strat End Strand Name
tig0029037 gene 20514 24413 20514 ID=Msa1440180;Name=Msa1440180
tig0029037 mRNA 20514 24413 20514 ID=Msa1440180-mRNA-1;Parent=Msa1440180;Name=Msa1440180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=72|1|1|1|1|1|3|286|298
tig0029037 exon 20514 20984 20514 ID=Msa1440180-mRNA-1:exon:12129;Parent=Msa1440180-mRNA-1
tig0029037 exon 22702 22878 22702 ID=Msa1440180-mRNA-1:exon:12130;Parent=Msa1440180-mRNA-1
tig0029037 exon 23807 24413 23807 ID=Msa1440180-mRNA-1:exon:12131;Parent=Msa1440180-mRNA-1
tig0029037 five_prime_UTR 20514 20585 20514 ID=Msa1440180-mRNA-1:five_prime_utr;Parent=Msa1440180-mRNA-1
tig0029037 CDS 20586 20984 20586 ID=Msa1440180-mRNA-1:cds;Parent=Msa1440180-mRNA-1
tig0029037 CDS 22702 22878 22702 ID=Msa1440180-mRNA-1:cds;Parent=Msa1440180-mRNA-1
tig0029037 CDS 23807 24127 23807 ID=Msa1440180-mRNA-1:cds;Parent=Msa1440180-mRNA-1
tig0029037 three_prime_UTR 24128 24413 24128 ID=Msa1440180-mRNA-1:three_prime_utr;Parent=Msa1440180-mRNA-1
Gene Sequence

>Msa1440180

ATGGTACTTTCAAACCTCACTTCATCACCATCATCTTCATCACCATATTCACAATTCTTCAACCTCTCATCATTCTCCAAACTCACATCACCATCTTCATCATCACTTCTCTTCCACAGCCACCACCATGTTCATCACCAAACAAAACAACAAACTTCAAAACCCACTACAAATTTCACCATTAAAGCTTACATGGAGAATCCAAACTCATTTTCAAATGTTGTTAGCAAAGTTATTGGTGCTCTTCCTGTTGTTGGTCTTTTAGCTAGGATTATGAGTGATGAAGGTGGTGTTGGTAATGATCTTATTGATTTTGCTGAGTTTAGAAGAAGGGTTGGTAAGAATTGTACTGCTACTGATTCTACTGCTTTTTATCAGTTTCAAGCAAGAAGAGGAAGGGCAGGGGATCAGGCAGGGGATCCTATCTATGTTCTGCTATGTTGTTGGCTAGCTGCTATTGGTGCAGGTCTTCTCAAAACTGAGGAGATTTTGGAAGGAGTCGGAAGGCTTCGGATCTCAAACGACATTGAATTTGAGGAACAGACTTTCATAGCCATGATGGATGAAGCAAGAGAGAGAAGGGCAAGACAAAAAGGTGCACCTCCCGCTGTTCCAATGGAGGTTCGAGTCGAGAAAGCTCTTGATGCAATCTACGTTTGTTGCTTCGGAAAGGATCCTATAGAGACAGAAGATGAGAGGTTGCTGAGTACAATACTTAGTTCAGTTTTTCCATCTGTTCAAAAACAAGAGATTCGACGCATGGTTAAAGAGATGGCAGACAAAGTAGAAGATGGAGGTATGGATTATATTCCAGATGCTGCTAAGCCTCTATCAAAGGAAGCTGTTGAAATGCAAATGAAAGACCTTAACTTTCTCAAACAAAATAGTAATACTTAG

Protein sequence

>Msa1440180

MVLSNLTSSPSSSSPYSQFFNLSSFSKLTSPSSSSLLFHSHHHVHHQTKQQTSKPTTNFTIKAYMENPNSFSNVVSKVIGALPVVGLLARIMSDEGGVGNDLIDFAEFRRRVGKNCTATDSTAFYQFQARRGRAGDQAGDPIYVLLCCWLAAIGAGLLKTEEILEGVGRLRISNDIEFEEQTFIAMMDEARERRARQKGAPPAVPMEVRVEKALDAIYVCCFGKDPIETEDERLLSTILSSVFPSVQKQEIRRMVKEMADKVEDGGMDYIPDAAKPLSKEAVEMQMKDLNFLKQNSNT*