AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0934830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934830 MtrunA17_Chr6g0450831 98.000 300 4 1 1 298 1 300 0.0 610
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934830 AT3G55250.1 54.333 300 106 6 1 296 2 274 1.06e-106 311

Find 73 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCCATGTAAGCTTTAA+TGG 0.159444 6_3:-4914036 None:intergenic
TCTCAAAACTGAGGAGATTT+TGG 0.193705 6_3:+4916044 Msa0934830:CDS
ACAACATTTGAAAATGAGTT+TGG 0.277068 6_3:-4914059 None:intergenic
AGGCTCAAACACCTTGCTTT+AGG 0.281011 6_3:-4917455 None:intergenic
AGCAAGGTGTTTGAGCCTTT+TGG 0.286437 6_3:+4917460 Msa0934830:three_prime_UTR
AATGTTGTTAGCAAAGTTAT+TGG 0.287367 6_3:+4914074 Msa0934830:CDS
TGTTGTTGGCTAGCTGCTAT+TGG 0.290097 6_3:+4916012 Msa0934830:CDS
TTCACTAGTTTGCTTGTTTG+TGG 0.315318 6_3:+4917626 Msa0934830:three_prime_UTR
GCAATCTACGTTTGTTGCTT+CGG 0.330000 6_3:+4917148 Msa0934830:CDS
GTTGTAAAACTTGGGGTTAT+AGG 0.331320 6_3:+4917519 Msa0934830:three_prime_UTR
TATATGTTGTGTTATCTTGT+TGG 0.347247 6_3:-4913785 None:intergenic
TGAAGATGGTGATGTGAGTT+TGG 0.354292 6_3:-4913934 None:intergenic
ATTGGTGCTCTTCCTGTTGT+TGG 0.376523 6_3:+4914092 Msa0934830:CDS
TTGATATACAATGCATTGAA+TGG 0.390085 6_3:+4917422 Msa0934830:three_prime_UTR
TAGAGAAGGGCAAGACAAAA+AGG 0.394828 6_3:+4917076 Msa0934830:intron
TCTATGTTCTGCTATGTTGT+TGG 0.398804 6_3:+4915998 Msa0934830:CDS
TCAACAGCTTCCTTTGATAG+AGG 0.406723 6_3:-4917328 None:intergenic
CTCTCATCTTCTGTCTCTAT+AGG 0.411361 6_3:-4917178 None:intergenic
TACTAGATGTTGTAAAACTT+GGG 0.414953 6_3:+4917511 Msa0934830:three_prime_UTR
GATAGAGGCTTAGCAGCATC+TGG 0.416100 6_3:-4917313 None:intergenic
TTCTCGACTCGAACCTCCAT+TGG 0.422859 6_3:-4917115 None:intergenic
TGGAAGGAGTCGGAAGGCTT+CGG 0.426849 6_3:+4916064 Msa0934830:CDS
TTTAATGGTGAAATTTGTAG+TGG 0.432350 6_3:-4914021 None:intergenic
TTATGTGTAGGCAGGGGATC+AGG 0.435584 6_3:+4915963 Msa0934830:intron
CAACATAGCAGAACATAGAT+AGG 0.442461 6_3:-4915994 None:intergenic
CTCAAACGACATTGAATTTG+AGG 0.443655 6_3:+4916089 Msa0934830:CDS
AGATGATACAAAAGATTTCA+AGG 0.444324 6_3:+4917656 Msa0934830:three_prime_UTR
ATACTAGATGTTGTAAAACT+TGG 0.444757 6_3:+4917510 Msa0934830:three_prime_UTR
TGGCTAGCTGCTATTGGTGC+AGG 0.446908 6_3:+4916018 Msa0934830:CDS
AGGTTGAAGAATTGTGAATA+TGG 0.458125 6_3:-4913900 None:intergenic
TTTCACCATTAAAGCTTACA+TGG 0.460009 6_3:+4914031 Msa0934830:CDS
GTGTAGGCAGGGGATCAGGC+AGG 0.461380 6_3:+4915967 Msa0934830:intron
GCTAGGATTATGAGTGATGA+AGG 0.474789 6_3:+4914122 Msa0934830:CDS
TGCACCTCCCGCTGTTCCAA+TGG 0.475703 6_3:+4917099 Msa0934830:CDS
GATGAACATGGTGGTGGCTG+TGG 0.501553 6_3:-4913971 None:intergenic
CTCTCTTGCTTCATCCATCA+TGG 0.504937 6_3:-4916127 None:intergenic
ATGAGTGATGAAGGTGGTGT+TGG 0.509665 6_3:+4914131 Msa0934830:CDS
CTAGCTAAAAGACCAACAAC+AGG 0.516749 6_3:-4914104 None:intergenic
CGAACCTCCATTGGAACAGC+GGG 0.522801 6_3:-4917106 None:intergenic
GTTTGAAAGTACCATGTTTG+TGG 0.523489 6_3:-4913850 None:intergenic
ATGGCAGACAAAGTAGAAGA+TGG 0.525072 6_3:+4917274 Msa0934830:CDS
GCTGAGTTTAGAAGAAGGGT+TGG 0.525341 6_3:+4914173 Msa0934830:CDS
TTTGGTGATGAACATGGTGG+TGG 0.527219 6_3:-4913977 None:intergenic
GTAGGCAGGGGATCAGGCAG+GGG 0.535398 6_3:+4915969 Msa0934830:intron
CAAAGTAGAAGATGGAGGTA+TGG 0.536962 6_3:+4917282 Msa0934830:CDS
CTACGTTTGTTGCTTCGGAA+AGG 0.538343 6_3:+4917153 Msa0934830:CDS
TGTAGGCAGGGGATCAGGCA+GGG 0.548433 6_3:+4915968 Msa0934830:intron
TATCAGTTTCAAGCAAGAAG+AGG 0.555632 6_3:+4914230 Msa0934830:CDS
TTCCCCTATGAGTAGCCAAA+AGG 0.559654 6_3:-4917475 None:intergenic
AAAACAAGAGATTCGACGCA+TGG 0.562381 6_3:+4917243 Msa0934830:CDS
AGTTTCAAGCAAGAAGAGGA+AGG 0.571685 6_3:+4914234 Msa0934830:CDS
TGCTGCTAAGCCTCTATCAA+AGG 0.573332 6_3:+4917318 Msa0934830:CDS
TCGACGCATGGTTAAAGAGA+TGG 0.576065 6_3:+4917255 Msa0934830:CDS
GAATTATATTTCCTAAAGCA+AGG 0.579582 6_3:+4917444 Msa0934830:three_prime_UTR
ACCTCCCGCTGTTCCAATGG+AGG 0.583040 6_3:+4917102 Msa0934830:CDS
ACCTCCATTGGAACAGCGGG+AGG 0.583730 6_3:-4917103 None:intergenic
TTAATGGTGAAATTTGTAGT+GGG 0.585415 6_3:-4914020 None:intergenic
ACTAGATGTTGTAAAACTTG+GGG 0.590076 6_3:+4917512 Msa0934830:three_prime_UTR
TCGAACCTCCATTGGAACAG+CGG 0.593033 6_3:-4917107 None:intergenic
GTTTCAAGCAAGAAGAGGAA+GGG 0.598303 6_3:+4914235 Msa0934830:CDS
AAGAGAAGTGATGATGAAGA+TGG 0.607751 6_3:-4913948 None:intergenic
ACAAACAAGCAAACTAGTGA+AGG 0.614970 6_3:-4917624 None:intergenic
CATGATGGATGAAGCAAGAG+AGG 0.615451 6_3:+4916128 Msa0934830:CDS
AAGATGATGGTGATGAAGTG+AGG 0.616181 6_3:-4913872 None:intergenic
ACAGACTTTCATAGCCATGA+TGG 0.617255 6_3:+4916113 Msa0934830:CDS
CTATAGAGACAGAAGATGAG+AGG 0.617615 6_3:+4917179 Msa0934830:CDS
TGAGTTTGGAGAATGATGAG+AGG 0.632202 6_3:-4913920 None:intergenic
GAATATGGTGATGAAGATGA+TGG 0.648564 6_3:-4913885 None:intergenic
TTGTTTGGTGATGAACATGG+TGG 0.668676 6_3:-4913980 None:intergenic
ACACAACATATATAAACGAG+AGG 0.669113 6_3:+4913796 Msa0934830:five_prime_UTR
TGCAGGTCTTCTCAAAACTG+AGG 0.678847 6_3:+4916035 Msa0934830:CDS
GCAGACAAAGTAGAAGATGG+AGG 0.689858 6_3:+4917277 Msa0934830:CDS
AGGATTATGAGTGATGAAGG+TGG 0.737229 6_3:+4914125 Msa0934830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAATTAGAGTTTAA+TGG - chr6_3:4914648-4914667 None:intergenic 10.0%
!!! ATTAAACTCTAATTTTATAA+AGG + chr6_3:4914647-4914666 Msa0934830:intron 10.0%
!! AAAGATGCAAAATTTAATAA+AGG - chr6_3:4914285-4914304 None:intergenic 15.0%
!! TAACCTTAATCAAATTATAA+GGG - chr6_3:4915432-4915451 None:intergenic 15.0%
!!! TTAAGCTATTTTTATAACAA+AGG - chr6_3:4916946-4916965 None:intergenic 15.0%
!! TCTCATTCACATAAAATAAA+AGG - chr6_3:4914457-4914476 None:intergenic 20.0%
!! ATAAAATTAGAGTTTAATGG+AGG - chr6_3:4914645-4914664 None:intergenic 20.0%
!!! TCTAAAGTTAAGTGTATTTT+TGG + chr6_3:4914690-4914709 Msa0934830:intron 20.0%
!!! AAAATTGATTCTAACTAGTT+TGG - chr6_3:4914935-4914954 None:intergenic 20.0%
!!! AAACTAGTTAGAATCAATTT+TGG + chr6_3:4914934-4914953 Msa0934830:intron 20.0%
!! AATAGTTGTATCATTTGATA+AGG + chr6_3:4915290-4915309 Msa0934830:intron 20.0%
!! AAATAACATGAAGTAACAAT+TGG + chr6_3:4915330-4915349 Msa0934830:intron 20.0%
!! ATGCTCAAAATTTAATCTTT+GGG + chr6_3:4915403-4915422 Msa0934830:intron 20.0%
!! TAACCCTTATAATTTGATTA+AGG + chr6_3:4915426-4915445 Msa0934830:intron 20.0%
!! CTAACCTTAATCAAATTATA+AGG - chr6_3:4915433-4915452 None:intergenic 20.0%
!! TGTAACCTTATAATTGATTA+AGG + chr6_3:4915563-4915582 Msa0934830:intron 20.0%
!! AAAGATTCATATTTGATTGT+GGG - chr6_3:4915738-4915757 None:intergenic 20.0%
!! AATCAAATATGAATCTTTCT+TGG + chr6_3:4915740-4915759 Msa0934830:intron 20.0%
!! ATCAAATATGAATCTTTCTT+GGG + chr6_3:4915741-4915760 Msa0934830:intron 20.0%
!!! TATATTTGATTTGTAGACTA+TGG + chr6_3:4916308-4916327 Msa0934830:intron 20.0%
!!! TCCTTTTTAATCTACATTTA+GGG - chr6_3:4916371-4916390 None:intergenic 20.0%
!!! TTCCTTTTTAATCTACATTT+AGG - chr6_3:4916372-4916391 None:intergenic 20.0%
!! AATAGGAATGATCTAAATAT+TGG + chr6_3:4916575-4916594 Msa0934830:intron 20.0%
!! ATAGGAATGATCTAAATATT+GGG + chr6_3:4916576-4916595 Msa0934830:intron 20.0%
!!! TATTTTGTTTGAGAAAGTTA+AGG - chr6_3:4917369-4917388 None:intergenic 20.0%
!!! TTGAAGTTTGTTGTTTTGTT+TGG - chr6_3:4913998-4914017 None:intergenic 25.0%
! TTAATGGTGAAATTTGTAGT+GGG - chr6_3:4914023-4914042 None:intergenic 25.0%
! TTTAATGGTGAAATTTGTAG+TGG - chr6_3:4914024-4914043 None:intergenic 25.0%
! ACAACATTTGAAAATGAGTT+TGG - chr6_3:4914062-4914081 None:intergenic 25.0%
! AATGTTGTTAGCAAAGTTAT+TGG + chr6_3:4914074-4914093 Msa0934830:CDS 25.0%
!! GTTACAATTTTTACCTATTG+AGG + chr6_3:4914317-4914336 Msa0934830:intron 25.0%
!!! AACCTAATGTTGCATTTTTT+TGG + chr6_3:4914369-4914388 Msa0934830:intron 25.0%
! AACCAAAAAAATGCAACATT+AGG - chr6_3:4914374-4914393 None:intergenic 25.0%
!!! TAGTTATTTTTTGACTTGTG+AGG + chr6_3:4914399-4914418 Msa0934830:intron 25.0%
!!! TGTAAACTAGTTTTACACTT+AGG + chr6_3:4914490-4914509 Msa0934830:intron 25.0%
! TCCAATTAGAAATGAGAATT+AGG + chr6_3:4914513-4914532 Msa0934830:intron 25.0%
! ACCTAATTCTCATTTCTAAT+TGG - chr6_3:4914517-4914536 None:intergenic 25.0%
! GAAAGATGATGTGAATTTAT+TGG + chr6_3:4914584-4914603 Msa0934830:intron 25.0%
!! ATAAAGGCAATTTTGCATTT+TGG + chr6_3:4914663-4914682 Msa0934830:intron 25.0%
!! TAAAGGCAATTTTGCATTTT+GGG + chr6_3:4914664-4914683 Msa0934830:intron 25.0%
!!! TGATTTTGAGTGAATTGATT+CGG + chr6_3:4914728-4914747 Msa0934830:intron 25.0%
!!! TGATTCGGTAAAATTGATTT+TGG + chr6_3:4914743-4914762 Msa0934830:intron 25.0%
!! AGTTTAAAGTGAGTTATGTT+TGG + chr6_3:4914780-4914799 Msa0934830:intron 25.0%
!! GTTTAAAGTGAGTTATGTTT+GGG + chr6_3:4914781-4914800 Msa0934830:intron 25.0%
!!! TTAGAATCAATTTTGGTCAT+CGG + chr6_3:4914941-4914960 Msa0934830:intron 25.0%
! AATATCAACCATAATCAACA+GGG - chr6_3:4915053-4915072 None:intergenic 25.0%
!! CAAAGATTAAATTTTGAGCA+TGG - chr6_3:4915404-4915423 None:intergenic 25.0%
! CATGCTCAAAATTTAATCTT+TGG + chr6_3:4915402-4915421 Msa0934830:intron 25.0%
! AAGATGCAAAATTTGAACTT+GGG - chr6_3:4915485-4915504 None:intergenic 25.0%
!! AAGTTCAAATTTTGCATCTT+GGG + chr6_3:4915485-4915504 Msa0934830:intron 25.0%
! TATAGTTTGATACCTAAATG+AGG + chr6_3:4915513-4915532 Msa0934830:intron 25.0%
! ACCTTATAATTGATTAAGGT+TGG + chr6_3:4915567-4915586 Msa0934830:intron 25.0%
! TTGTTCTGTATAGTTAAATG+AGG + chr6_3:4915646-4915665 Msa0934830:intron 25.0%
! GAAAGATTCATATTTGATTG+TGG - chr6_3:4915739-4915758 None:intergenic 25.0%
!! TCTTTTCCTTTTTATTCTTG+AGG + chr6_3:4915853-4915872 Msa0934830:intron 25.0%
! AATCTACCTCAAGAATAAAA+AGG - chr6_3:4915862-4915881 None:intergenic 25.0%
! TTCATGTGCTAAAATAGAAA+TGG + chr6_3:4915903-4915922 Msa0934830:intron 25.0%
! ACCCTAAATGTAGATTAAAA+AGG + chr6_3:4916367-4916386 Msa0934830:intron 25.0%
!! TGATATTCAACACGATATTT+TGG - chr6_3:4916465-4916484 None:intergenic 25.0%
!! CAACTTGATAGATTTAGAAT+CGG + chr6_3:4916685-4916704 Msa0934830:intron 25.0%
! CTAGAGAACTTATGAAAATA+TGG - chr6_3:4916868-4916887 None:intergenic 25.0%
!! CATATTTTCATAAGTTCTCT+AGG + chr6_3:4916866-4916885 Msa0934830:intron 25.0%
!! AATTTTCCAGTTGTTAGAAT+AGG - chr6_3:4917042-4917061 None:intergenic 25.0%
! TTGATATACAATGCATTGAA+TGG + chr6_3:4917422-4917441 Msa0934830:three_prime_UTR 25.0%
! GAATTATATTTCCTAAAGCA+AGG + chr6_3:4917444-4917463 Msa0934830:three_prime_UTR 25.0%
! ATACTAGATGTTGTAAAACT+TGG + chr6_3:4917510-4917529 Msa0934830:three_prime_UTR 25.0%
! TACTAGATGTTGTAAAACTT+GGG + chr6_3:4917511-4917530 Msa0934830:three_prime_UTR 25.0%
! AGATGATACAAAAGATTTCA+AGG + chr6_3:4917656-4917675 Msa0934830:three_prime_UTR 25.0%
ACACAACATATATAAACGAG+AGG + chr6_3:4913796-4913815 Msa0934830:five_prime_UTR 30.0%
CAAAAACAAAACCACAAACA+TGG + chr6_3:4913839-4913858 Msa0934830:exon 30.0%
AGGTTGAAGAATTGTGAATA+TGG - chr6_3:4913903-4913922 None:intergenic 30.0%
TTTCACCATTAAAGCTTACA+TGG + chr6_3:4914031-4914050 Msa0934830:CDS 30.0%
! ATTCTCCATGTAAGCTTTAA+TGG - chr6_3:4914039-4914058 None:intergenic 30.0%
! ATTTTGCTGAGTTTAGAAGA+AGG + chr6_3:4914168-4914187 Msa0934830:CDS 30.0%
! TTTTGCTGAGTTTAGAAGAA+GGG + chr6_3:4914169-4914188 Msa0934830:CDS 30.0%
GAACATGAATTAACCTCAAT+AGG - chr6_3:4914333-4914352 None:intergenic 30.0%
!!! TATTTTTTGACTTGTGAGGT+TGG + chr6_3:4914403-4914422 Msa0934830:intron 30.0%
GATGTGAATTTATTGGATGA+CGG + chr6_3:4914591-4914610 Msa0934830:intron 30.0%
ACCTTATAGTTGTCAGATTA+CGG + chr6_3:4914999-4915018 Msa0934830:intron 30.0%
GAATATCAACCATAATCAAC+AGG - chr6_3:4915054-4915073 None:intergenic 30.0%
ATTGATACCCAACTAACAAA+TGG - chr6_3:4915090-4915109 None:intergenic 30.0%
TTGTTAGTTGGGTATCAATT+AGG + chr6_3:4915091-4915110 Msa0934830:intron 30.0%
AACCATAAATCACTACATAC+TGG + chr6_3:4915206-4915225 Msa0934830:intron 30.0%
TTCCAGTATGTAGTGATTTA+TGG - chr6_3:4915211-4915230 None:intergenic 30.0%
GTAAGAGAAATAAGCACAAT+TGG + chr6_3:4915252-4915271 Msa0934830:intron 30.0%
CAACTATTGATCATAGAGTT+TGG - chr6_3:4915278-4915297 None:intergenic 30.0%
AGATGCAAAATTTGAACTTG+GGG - chr6_3:4915484-4915503 None:intergenic 30.0%
CAAGATGCAAAATTTGAACT+TGG - chr6_3:4915486-4915505 None:intergenic 30.0%
! CAAGTTCAAATTTTGCATCT+TGG + chr6_3:4915484-4915503 Msa0934830:intron 30.0%
GCCAACCTTAATCAATTATA+AGG - chr6_3:4915571-4915590 None:intergenic 30.0%
AATATCCAAATTTGATCGTG+GGG - chr6_3:4915628-4915647 None:intergenic 30.0%
CAATATCCAAATTTGATCGT+GGG - chr6_3:4915629-4915648 None:intergenic 30.0%
ACAATATCCAAATTTGATCG+TGG - chr6_3:4915630-4915649 None:intergenic 30.0%
! GTTAAATGAGGTTGATTTCA+TGG + chr6_3:4915658-4915677 Msa0934830:intron 30.0%
ATTCATATTTGATTGTGGGA+TGG - chr6_3:4915734-4915753 None:intergenic 30.0%
! TGGGATTTAAAGTTGTCAAA+TGG + chr6_3:4915760-4915779 Msa0934830:intron 30.0%
! GGGATTTAAAGTTGTCAAAT+GGG + chr6_3:4915761-4915780 Msa0934830:intron 30.0%
CAAGTTTGAGTGATTTCATT+CGG + chr6_3:4915785-4915804 Msa0934830:intron 30.0%
!! ATTAGCCTTCATTCATTGTA+AGG - chr6_3:4915825-4915844 None:intergenic 30.0%
! TATTCTTGAGGTAGATTTTG+TGG + chr6_3:4915865-4915884 Msa0934830:intron 30.0%
AATTAGTGTAAACTTAGTCC+AGG + chr6_3:4916401-4916420 Msa0934830:intron 30.0%
!!! AAAACCAGACTATTTTTTCC+TGG - chr6_3:4916422-4916441 None:intergenic 30.0%
!!! TTTTGGAGCTCGAAATTTTA+AGG - chr6_3:4916448-4916467 None:intergenic 30.0%
ATCGTGTTGAATATCAATTC+TGG + chr6_3:4916469-4916488 Msa0934830:intron 30.0%
GTTGAATATCAATTCTGGAT+CGG + chr6_3:4916474-4916493 Msa0934830:intron 30.0%
GATGTTCGTTTGTAACTAAT+AGG + chr6_3:4916558-4916577 Msa0934830:intron 30.0%
TAGGAAAATTCATTGCGATT+GGG - chr6_3:4916618-4916637 None:intergenic 30.0%
GAAATGGATGAAACTTTACT+AGG - chr6_3:4916637-4916656 None:intergenic 30.0%
! GCAATTTTCATTCTACGAAA+TGG - chr6_3:4916653-4916672 None:intergenic 30.0%
GGAATATATGTCATACATCT+TGG - chr6_3:4916721-4916740 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr6_3:4916755-4916774 None:intergenic 30.0%
AATATGGTGAAAACAGCTTA+TGG - chr6_3:4916852-4916871 None:intergenic 30.0%
TATGTTGAACACTATAGAGA+AGG + chr6_3:4917062-4917081 Msa0934830:intron 30.0%
ATGTTGAACACTATAGAGAA+GGG + chr6_3:4917063-4917082 Msa0934830:intron 30.0%
!!! ATCTCTTGTTTTTGAACAGA+TGG - chr6_3:4917235-4917254 None:intergenic 30.0%
ACTAGATGTTGTAAAACTTG+GGG + chr6_3:4917512-4917531 Msa0934830:three_prime_UTR 30.0%
!! GTTTGAAAGTACCATGTTTG+TGG - chr6_3:4913853-4913872 None:intergenic 35.0%
! GAATATGGTGATGAAGATGA+TGG - chr6_3:4913888-4913907 None:intergenic 35.0%
! AAGAGAAGTGATGATGAAGA+TGG - chr6_3:4913951-4913970 None:intergenic 35.0%
!!! GTTTTGTTTGGTGATGAACA+TGG - chr6_3:4913986-4914005 None:intergenic 35.0%
TATCAGTTTCAAGCAAGAAG+AGG + chr6_3:4914230-4914249 Msa0934830:CDS 35.0%
! TCATGTAGAATCGATTCTAG+AGG + chr6_3:4914884-4914903 Msa0934830:intron 35.0%
ACCGTAATCTGACAACTATA+AGG - chr6_3:4915003-4915022 None:intergenic 35.0%
! GGTTGATATTCGCTAATAAG+TGG + chr6_3:4915063-4915082 Msa0934830:intron 35.0%
! TAAGTGGTCCATTTGTTAGT+TGG + chr6_3:4915079-4915098 Msa0934830:intron 35.0%
! AAGTGGTCCATTTGTTAGTT+GGG + chr6_3:4915080-4915099 Msa0934830:intron 35.0%
TTAGTTGGGTATCAATTAGG+AGG + chr6_3:4915094-4915113 Msa0934830:intron 35.0%
TAGTTGGGTATCAATTAGGA+GGG + chr6_3:4915095-4915114 Msa0934830:intron 35.0%
TTCAGGGTAAACTTGTAATC+TGG + chr6_3:4915150-4915169 Msa0934830:intron 35.0%
GCATGAAATCAACCTCATTT+AGG - chr6_3:4915528-4915547 None:intergenic 35.0%
ACCAACCTTACAATGAATGA+AGG + chr6_3:4915817-4915836 Msa0934830:intron 35.0%
!! GGTGTTTGTTTGTTATGTGT+AGG + chr6_3:4915951-4915970 Msa0934830:intron 35.0%
!! TTTGTTTGTTATGTGTAGGC+AGG + chr6_3:4915955-4915974 Msa0934830:intron 35.0%
!! TTGTTTGTTATGTGTAGGCA+GGG + chr6_3:4915956-4915975 Msa0934830:intron 35.0%
CAACATAGCAGAACATAGAT+AGG - chr6_3:4915997-4916016 None:intergenic 35.0%
TCTATGTTCTGCTATGTTGT+TGG + chr6_3:4915998-4916017 Msa0934830:CDS 35.0%
! TCTCAAAACTGAGGAGATTT+TGG + chr6_3:4916044-4916063 Msa0934830:CDS 35.0%
! AAAACTGAGGAGATTTTGGA+AGG + chr6_3:4916048-4916067 Msa0934830:CDS 35.0%
CTCAAACGACATTGAATTTG+AGG + chr6_3:4916089-4916108 Msa0934830:CDS 35.0%
TAGTCCAGGAAAAAATAGTC+TGG + chr6_3:4916415-4916434 Msa0934830:intron 35.0%
CGGCACATATACAAAATTCA+AGG + chr6_3:4916494-4916513 Msa0934830:intron 35.0%
ATTGCGATTGGGATTAATCA+AGG - chr6_3:4916607-4916626 None:intergenic 35.0%
CTAGGAAAATTCATTGCGAT+TGG - chr6_3:4916619-4916638 None:intergenic 35.0%
GACATATATTCCTGCTCTTT+CGG + chr6_3:4916729-4916748 Msa0934830:intron 35.0%
TATGCTCCTATTCTAACAAC+TGG + chr6_3:4917033-4917052 Msa0934830:intron 35.0%
GTTGTAAAACTTGGGGTTAT+AGG + chr6_3:4917519-4917538 Msa0934830:three_prime_UTR 35.0%
CAAACTAGTGAAGGAAAAAC+TGG - chr6_3:4917618-4917637 None:intergenic 35.0%
ACAAACAAGCAAACTAGTGA+AGG - chr6_3:4917627-4917646 None:intergenic 35.0%
!! TTCACTAGTTTGCTTGTTTG+TGG + chr6_3:4917626-4917645 Msa0934830:three_prime_UTR 35.0%
! AAGATGATGGTGATGAAGTG+AGG - chr6_3:4913875-4913894 None:intergenic 40.0%
TGAGTTTGGAGAATGATGAG+AGG - chr6_3:4913923-4913942 None:intergenic 40.0%
! TGAAGATGGTGATGTGAGTT+TGG - chr6_3:4913937-4913956 None:intergenic 40.0%
!! TTGTTTGGTGATGAACATGG+TGG - chr6_3:4913983-4914002 None:intergenic 40.0%
CTAGCTAAAAGACCAACAAC+AGG - chr6_3:4914107-4914126 None:intergenic 40.0%
!!! CTGTTGTTGGTCTTTTAGCT+AGG + chr6_3:4914105-4914124 Msa0934830:CDS 40.0%
GCTAGGATTATGAGTGATGA+AGG + chr6_3:4914122-4914141 Msa0934830:CDS 40.0%
AGGATTATGAGTGATGAAGG+TGG + chr6_3:4914125-4914144 Msa0934830:CDS 40.0%
AGTTTCAAGCAAGAAGAGGA+AGG + chr6_3:4914234-4914253 Msa0934830:CDS 40.0%
GTTTCAAGCAAGAAGAGGAA+GGG + chr6_3:4914235-4914254 Msa0934830:CDS 40.0%
AGTGACTTGAGCAACAAACT+TGG + chr6_3:4914818-4914837 Msa0934830:intron 40.0%
GTGACTTGAGCAACAAACTT+GGG + chr6_3:4914819-4914838 Msa0934830:intron 40.0%
GCCTTCATTCATTGTAAGGT+TGG - chr6_3:4915821-4915840 None:intergenic 40.0%
! GAGGTAGATTTTGTGGTAGA+AGG + chr6_3:4915872-4915891 Msa0934830:intron 40.0%
GTCTAAACGTGTGTCTAACT+TGG + chr6_3:4915930-4915949 Msa0934830:intron 40.0%
!! TGTTTGTTATGTGTAGGCAG+GGG + chr6_3:4915957-4915976 Msa0934830:intron 40.0%
ACAGACTTTCATAGCCATGA+TGG + chr6_3:4916113-4916132 Msa0934830:CDS 40.0%
CTGAGTAAAGCTTTCAGAGA+TGG - chr6_3:4916161-4916180 None:intergenic 40.0%
AAGTCAAGTACCAACCATGT+TGG + chr6_3:4916526-4916545 Msa0934830:intron 40.0%
! ACATCTTTGCTATGCCAACA+TGG - chr6_3:4916543-4916562 None:intergenic 40.0%
!! AAACTGTTCTAGAGAACGTG+TGG + chr6_3:4916808-4916827 Msa0934830:intron 40.0%
TAGAGAAGGGCAAGACAAAA+AGG + chr6_3:4917076-4917095 Msa0934830:intron 40.0%
! GCAATCTACGTTTGTTGCTT+CGG + chr6_3:4917148-4917167 Msa0934830:CDS 40.0%
CTCTCATCTTCTGTCTCTAT+AGG - chr6_3:4917181-4917200 None:intergenic 40.0%
CTATAGAGACAGAAGATGAG+AGG + chr6_3:4917179-4917198 Msa0934830:CDS 40.0%
AAAACAAGAGATTCGACGCA+TGG + chr6_3:4917243-4917262 Msa0934830:CDS 40.0%
ATGGCAGACAAAGTAGAAGA+TGG + chr6_3:4917274-4917293 Msa0934830:CDS 40.0%
CAAAGTAGAAGATGGAGGTA+TGG + chr6_3:4917282-4917301 Msa0934830:CDS 40.0%
TCAACAGCTTCCTTTGATAG+AGG - chr6_3:4917331-4917350 None:intergenic 40.0%
!! TTTGGTGATGAACATGGTGG+TGG - chr6_3:4913980-4913999 None:intergenic 45.0%
! ATTGGTGCTCTTCCTGTTGT+TGG + chr6_3:4914092-4914111 Msa0934830:CDS 45.0%
ATGAGTGATGAAGGTGGTGT+TGG + chr6_3:4914131-4914150 Msa0934830:CDS 45.0%
GCTGAGTTTAGAAGAAGGGT+TGG + chr6_3:4914173-4914192 Msa0934830:CDS 45.0%
! AGCTGCTACCCTGTTGATTA+TGG + chr6_3:4915042-4915061 Msa0934830:intron 45.0%
TGGGTATCAATTAGGAGGGT+TGG + chr6_3:4915099-4915118 Msa0934830:intron 45.0%
GGGTATCAATTAGGAGGGTT+GGG + chr6_3:4915100-4915119 Msa0934830:intron 45.0%
GGTATCAATTAGGAGGGTTG+GGG + chr6_3:4915101-4915120 Msa0934830:intron 45.0%
GTATCAATTAGGAGGGTTGG+GGG + chr6_3:4915102-4915121 Msa0934830:intron 45.0%
AAACCCTGTGGAACGATTCA+GGG + chr6_3:4915134-4915153 Msa0934830:intron 45.0%
TTACCCTGAATCGTTCCACA+GGG - chr6_3:4915140-4915159 None:intergenic 45.0%
TTTACCCTGAATCGTTCCAC+AGG - chr6_3:4915141-4915160 None:intergenic 45.0%
TACCACCCCACGATCAAATT+TGG + chr6_3:4915620-4915639 Msa0934830:intron 45.0%
ATCCAAATTTGATCGTGGGG+TGG - chr6_3:4915625-4915644 None:intergenic 45.0%
! TGTTGTTGGCTAGCTGCTAT+TGG + chr6_3:4916012-4916031 Msa0934830:CDS 45.0%
TGCAGGTCTTCTCAAAACTG+AGG + chr6_3:4916035-4916054 Msa0934830:CDS 45.0%
!! GAGGAGATTTTGGAAGGAGT+CGG + chr6_3:4916054-4916073 Msa0934830:CDS 45.0%
!! AGATTTTGGAAGGAGTCGGA+AGG + chr6_3:4916058-4916077 Msa0934830:CDS 45.0%
CTCTCTTGCTTCATCCATCA+TGG - chr6_3:4916130-4916149 None:intergenic 45.0%
!! CATGATGGATGAAGCAAGAG+AGG + chr6_3:4916128-4916147 Msa0934830:CDS 45.0%
! CTTTGCTATGCCAACATGGT+TGG - chr6_3:4916539-4916558 None:intergenic 45.0%
! CTACGTTTGTTGCTTCGGAA+AGG + chr6_3:4917153-4917172 Msa0934830:CDS 45.0%
TCGACGCATGGTTAAAGAGA+TGG + chr6_3:4917255-4917274 Msa0934830:CDS 45.0%
GCAGACAAAGTAGAAGATGG+AGG + chr6_3:4917277-4917296 Msa0934830:CDS 45.0%
TGCTGCTAAGCCTCTATCAA+AGG + chr6_3:4917318-4917337 Msa0934830:CDS 45.0%
AGGCTCAAACACCTTGCTTT+AGG - chr6_3:4917458-4917477 None:intergenic 45.0%
!! AGCAAGGTGTTTGAGCCTTT+TGG + chr6_3:4917460-4917479 Msa0934830:three_prime_UTR 45.0%
!! TGAGCCTTTTGGCTACTCAT+AGG + chr6_3:4917471-4917490 Msa0934830:three_prime_UTR 45.0%
!! GAGCCTTTTGGCTACTCATA+GGG + chr6_3:4917472-4917491 Msa0934830:three_prime_UTR 45.0%
!! AGCCTTTTGGCTACTCATAG+GGG + chr6_3:4917473-4917492 Msa0934830:three_prime_UTR 45.0%
TTCCCCTATGAGTAGCCAAA+AGG - chr6_3:4917478-4917497 None:intergenic 45.0%
GAAACCCTGTGGAACGATTC+AGG + chr6_3:4915133-4915152 Msa0934830:intron 50.0%
TTTGATCGTGGGGTGGTACT+TGG - chr6_3:4915618-4915637 None:intergenic 50.0%
TTATGTGTAGGCAGGGGATC+AGG + chr6_3:4915963-4915982 Msa0934830:intron 50.0%
TCGAACCTCCATTGGAACAG+CGG - chr6_3:4917110-4917129 None:intergenic 50.0%
! TTCTCGACTCGAACCTCCAT+TGG - chr6_3:4917118-4917137 None:intergenic 50.0%
GATAGAGGCTTAGCAGCATC+TGG - chr6_3:4917316-4917335 None:intergenic 50.0%
!! GATGAACATGGTGGTGGCTG+TGG - chr6_3:4913974-4913993 None:intergenic 55.0%
! TGGCTAGCTGCTATTGGTGC+AGG + chr6_3:4916018-4916037 Msa0934830:CDS 55.0%
TGGAAGGAGTCGGAAGGCTT+CGG + chr6_3:4916064-4916083 Msa0934830:CDS 55.0%
TCCTGCTCTTTCGGCCTGTT+TGG + chr6_3:4916738-4916757 Msa0934830:intron 55.0%
TCCAAACAGGCCGAAAGAGC+AGG - chr6_3:4916742-4916761 None:intergenic 55.0%
CGAACCTCCATTGGAACAGC+GGG - chr6_3:4917109-4917128 None:intergenic 55.0%
ATTAGGAGGGTTGGGGGTCC+AGG + chr6_3:4915108-4915127 Msa0934830:intron 60.0%
TTAGGAGGGTTGGGGGTCCA+GGG + chr6_3:4915109-4915128 Msa0934830:intron 60.0%
CGTTCCACAGGGTTTCACCC+TGG - chr6_3:4915129-4915148 None:intergenic 60.0%
TGTAGGCAGGGGATCAGGCA+GGG + chr6_3:4915968-4915987 Msa0934830:intron 60.0%
TGCACCTCCCGCTGTTCCAA+TGG + chr6_3:4917099-4917118 Msa0934830:CDS 60.0%
ACCTCCCGCTGTTCCAATGG+AGG + chr6_3:4917102-4917121 Msa0934830:CDS 60.0%
ACCTCCATTGGAACAGCGGG+AGG - chr6_3:4917106-4917125 None:intergenic 60.0%
GGGTCCAGGGTGAAACCCTG+TGG + chr6_3:4915122-4915141 Msa0934830:intron 65.0%
GTGTAGGCAGGGGATCAGGC+AGG + chr6_3:4915967-4915986 Msa0934830:intron 65.0%
GTAGGCAGGGGATCAGGCAG+GGG + chr6_3:4915969-4915988 Msa0934830:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 4913786 4917685 4913786 ID=Msa0934830;Name=Msa0934830
chr6_3 mRNA 4913786 4917685 4913786 ID=Msa0934830-mRNA-1;Parent=Msa0934830;Name=Msa0934830-mRNA-1;_AED=0.02;_eAED=0.02;_QI=72|1|1|1|1|1|3|286|298
chr6_3 exon 4913786 4914256 4913786 ID=Msa0934830-mRNA-1:exon:1545;Parent=Msa0934830-mRNA-1
chr6_3 exon 4915973 4916149 4915973 ID=Msa0934830-mRNA-1:exon:1546;Parent=Msa0934830-mRNA-1
chr6_3 exon 4917079 4917685 4917079 ID=Msa0934830-mRNA-1:exon:1547;Parent=Msa0934830-mRNA-1
chr6_3 five_prime_UTR 4913786 4913857 4913786 ID=Msa0934830-mRNA-1:five_prime_utr;Parent=Msa0934830-mRNA-1
chr6_3 CDS 4913858 4914256 4913858 ID=Msa0934830-mRNA-1:cds;Parent=Msa0934830-mRNA-1
chr6_3 CDS 4915973 4916149 4915973 ID=Msa0934830-mRNA-1:cds;Parent=Msa0934830-mRNA-1
chr6_3 CDS 4917079 4917399 4917079 ID=Msa0934830-mRNA-1:cds;Parent=Msa0934830-mRNA-1
chr6_3 three_prime_UTR 4917400 4917685 4917400 ID=Msa0934830-mRNA-1:three_prime_utr;Parent=Msa0934830-mRNA-1
Gene Sequence

>Msa0934830

ATGGTACTTTCAAACCTCACTTCATCACCATCATCTTCATCACCATATTCACAATTCTTCAACCTCTCATCATTCTCCAAACTCACATCACCATCTTCATCATCACTTCTCTTCCACAGCCACCACCATGTTCATCACCAAACAAAACAACAAACTTCAAAACCCACTACAAATTTCACCATTAAAGCTTACATGGAGAATCCAAACTCATTTTCAAATGTTGTTAGCAAAGTTATTGGTGCTCTTCCTGTTGTTGGTCTTTTAGCTAGGATTATGAGTGATGAAGGTGGTGTTGGTAATGATCTTATTGATTTTGCTGAGTTTAGAAGAAGGGTTGGTAAGAATTGTACTGCTACTGATTCTACTGCTTTTTATCAGTTTCAAGCAAGAAGAGGAAGGGCAGGGGATCAGGCAGGGGATCCTATCTATGTTCTGCTATGTTGTTGGCTAGCTGCTATTGGTGCAGGTCTTCTCAAAACTGAGGAGATTTTGGAAGGAGTCGGAAGGCTTCGGATCTCAAACGACATTGAATTTGAGGAACAGACTTTCATAGCCATGATGGATGAAGCAAGAGAGAGAAGGGCAAGACAAAAAGGTGCACCTCCCGCTGTTCCAATGGAGGTTCGAGTCGAGAAAGCTCTTGATGCAATCTACGTTTGTTGCTTCGGAAAGGATCCTATAGAGACAGAAGATGAGAGGTTGCTGAGTACAATACTTAGTTCAGTTTTTCCATCTGTTCAAAAACAAGAGATTCGACGCATGGTTAAAGAGATGGCAGACAAAGTAGAAGATGGAGGTATGGATTATATTCCAGATGCTGCTAAGCCTCTATCAAAGGAAGCTGTTGAAATGCAAATGAAAGACCTTAACTTTCTCAAACAAAATAGTAATACTTAG

Protein sequence

>Msa0934830

MVLSNLTSSPSSSSPYSQFFNLSSFSKLTSPSSSSLLFHSHHHVHHQTKQQTSKPTTNFTIKAYMENPNSFSNVVSKVIGALPVVGLLARIMSDEGGVGNDLIDFAEFRRRVGKNCTATDSTAFYQFQARRGRAGDQAGDPIYVLLCCWLAAIGAGLLKTEEILEGVGRLRISNDIEFEEQTFIAMMDEARERRARQKGAPPAVPMEVRVEKALDAIYVCCFGKDPIETEDERLLSTILSSVFPSVQKQEIRRMVKEMADKVEDGGMDYIPDAAKPLSKEAVEMQMKDLNFLKQNSNT*