Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1059420 | XP_024626104.1 | 93.080 | 289 | 19 | 1 | 1 | 289 | 1 | 288 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1059420 | sp|Q9SV61|XTH1_ARATH | 50.342 | 292 | 125 | 6 | 9 | 287 | 8 | 292 | 1.56e-96 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1059420 | A0A072U9U3 | 89.619 | 289 | 25 | 2 | 1 | 289 | 1 | 284 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0694250 | Msa1059420 | 0.800892 | 1.164686e-48 | -8.615850e-47 |
| Msa0222660 | Msa1059420 | 0.809212 | 2.115197e-50 | -8.615850e-47 |
| Msa0371540 | Msa1059420 | 0.800870 | 1.176644e-48 | -8.615850e-47 |
| Msa0389310 | Msa1059420 | 0.801435 | 9.016058e-49 | -8.615850e-47 |
| Msa0419970 | Msa1059420 | 0.806439 | 8.222416e-50 | -8.615850e-47 |
| Msa0431830 | Msa1059420 | 0.801002 | 1.105499e-48 | -8.615850e-47 |
| Msa0452410 | Msa1059420 | 0.804164 | 2.463818e-49 | -8.615850e-47 |
| Msa0466060 | Msa1059420 | 0.809786 | 1.593258e-50 | -8.615850e-47 |
| Msa1019660 | Msa1059420 | 0.848190 | 7.177520e-60 | -8.615850e-47 |
| Msa1026760 | Msa1059420 | 0.805578 | 1.247540e-49 | -8.615850e-47 |
| Msa1026790 | Msa1059420 | 0.805096 | 1.573925e-49 | -8.615850e-47 |
| Msa1059420 | Msa1070420 | 0.802013 | 6.861703e-49 | -8.615850e-47 |
| Msa1059420 | Msa1104390 | 0.861412 | 1.044481e-63 | -8.615850e-47 |
| Msa1059420 | Msa1142500 | 0.813660 | 2.287652e-51 | -8.615850e-47 |
| Msa1059420 | Msa1154160 | 0.802523 | 5.388957e-49 | -8.615850e-47 |
| Msa1059420 | Msa1198090 | 0.827154 | 1.830131e-54 | -8.615850e-47 |
| Msa1059420 | Msa1292730 | 0.811135 | 8.145296e-51 | -8.615850e-47 |
| Msa1059420 | Msa1343340 | 0.801042 | 1.085144e-48 | -8.615850e-47 |
| Msa1059420 | Msa1384320 | 0.807630 | 4.601004e-50 | -8.615850e-47 |
| Msa1059420 | Msa1396830 | 0.808691 | 2.735033e-50 | -8.615850e-47 |
| Msa0264050 | Msa1059420 | 0.807915 | 4.003669e-50 | -8.615850e-47 |
| Msa0301980 | Msa1059420 | 0.820134 | 8.052590e-53 | -8.615850e-47 |
| Msa0517340 | Msa1059420 | 0.802055 | 6.726220e-49 | -8.615850e-47 |
| Msa0870620 | Msa1059420 | 0.837393 | 5.336940e-57 | -8.615850e-47 |
| Msa0872420 | Msa1059420 | 0.816286 | 5.981016e-52 | -8.615850e-47 |
| Msa0905720 | Msa1059420 | 0.816618 | 5.038705e-52 | -8.615850e-47 |
| Msa0974910 | Msa1059420 | 0.814983 | 1.166966e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1059420 | MtrunA17_Chr7g0235541 | 94.762 | 210 | 11 | 0 | 80 | 289 | 1 | 210 | 7.43e-155 | 430 |
| Msa1059420 | MtrunA17_Chr8g0340001 | 57.078 | 219 | 86 | 3 | 64 | 279 | 8 | 221 | 3.53e-89 | 265 |
| Msa1059420 | MtrunA17_Chr2g0303721 | 44.211 | 285 | 141 | 6 | 5 | 287 | 3 | 271 | 1.74e-84 | 254 |
| Msa1059420 | MtrunA17_Chr2g0303861 | 46.619 | 281 | 136 | 6 | 11 | 287 | 8 | 278 | 6.05e-84 | 253 |
| Msa1059420 | MtrunA17_Chr7g0252631 | 45.833 | 288 | 141 | 7 | 9 | 287 | 7 | 288 | 9.74e-82 | 248 |
| Msa1059420 | MtrunA17_Chr7g0252621 | 45.070 | 284 | 143 | 6 | 12 | 287 | 10 | 288 | 4.41e-81 | 246 |
| Msa1059420 | MtrunA17_Chr7g0252601 | 44.330 | 291 | 144 | 6 | 10 | 287 | 3 | 288 | 1.76e-80 | 245 |
| Msa1059420 | MtrunA17_Chr4g0054431 | 43.617 | 282 | 145 | 7 | 5 | 281 | 7 | 279 | 3.38e-79 | 241 |
| Msa1059420 | MtrunA17_Chr4g0054451 | 43.617 | 282 | 147 | 7 | 5 | 281 | 7 | 281 | 4.67e-79 | 241 |
| Msa1059420 | MtrunA17_Chr6g0461731 | 42.606 | 284 | 150 | 6 | 11 | 286 | 32 | 310 | 5.42e-76 | 234 |
| Msa1059420 | MtrunA17_Chr6g0461761 | 42.254 | 284 | 151 | 6 | 11 | 286 | 9 | 287 | 2.94e-74 | 229 |
| Msa1059420 | MtrunA17_Chr1g0206081 | 40.541 | 296 | 165 | 7 | 2 | 288 | 3 | 296 | 4.09e-73 | 226 |
| Msa1059420 | MtrunA17_Chr1g0206681 | 42.907 | 289 | 150 | 7 | 10 | 288 | 10 | 293 | 4.63e-70 | 218 |
| Msa1059420 | MtrunA17_Chr4g0072611 | 42.414 | 290 | 143 | 9 | 10 | 288 | 6 | 282 | 6.08e-69 | 215 |
| Msa1059420 | MtrunA17_Chr4g0023961 | 40.972 | 288 | 132 | 8 | 10 | 278 | 9 | 277 | 4.80e-67 | 211 |
| Msa1059420 | MtrunA17_Chr7g0258911 | 41.696 | 283 | 145 | 7 | 17 | 288 | 8 | 281 | 8.60e-67 | 209 |
| Msa1059420 | MtrunA17_Chr2g0323161 | 40.476 | 294 | 145 | 9 | 1 | 282 | 4 | 279 | 1.98e-66 | 209 |
| Msa1059420 | MtrunA17_Chr6g0486581 | 38.144 | 291 | 157 | 8 | 7 | 286 | 5 | 283 | 5.17e-65 | 205 |
| Msa1059420 | MtrunA17_Chr4g0072671 | 44.444 | 270 | 134 | 6 | 28 | 286 | 21 | 285 | 8.23e-65 | 204 |
| Msa1059420 | MtrunA17_Chr2g0299061 | 41.392 | 273 | 147 | 6 | 14 | 278 | 7 | 274 | 2.28e-64 | 204 |
| Msa1059420 | MtrunA17_Chr4g0071341 | 41.935 | 279 | 139 | 8 | 22 | 288 | 16 | 283 | 6.79e-64 | 202 |
| Msa1059420 | MtrunA17_Chr8g0377841 | 41.026 | 273 | 140 | 8 | 11 | 278 | 13 | 269 | 1.04e-62 | 199 |
| Msa1059420 | MtrunA17_Chr3g0122021 | 39.007 | 282 | 151 | 7 | 1 | 278 | 1 | 265 | 1.44e-61 | 196 |
| Msa1059420 | MtrunA17_Chr3g0122031 | 39.852 | 271 | 144 | 7 | 12 | 278 | 10 | 265 | 2.31e-61 | 196 |
| Msa1059420 | MtrunA17_Chr4g0072601 | 40.426 | 282 | 152 | 7 | 18 | 289 | 11 | 286 | 1.51e-59 | 191 |
| Msa1059420 | MtrunA17_Chr3g0096651 | 41.036 | 251 | 135 | 5 | 32 | 278 | 29 | 270 | 3.70e-59 | 190 |
| Msa1059420 | MtrunA17_Chr5g0443391 | 39.161 | 286 | 149 | 8 | 13 | 287 | 8 | 279 | 9.48e-59 | 189 |
| Msa1059420 | MtrunA17_Chr8g0375981 | 36.149 | 296 | 174 | 8 | 3 | 288 | 2 | 292 | 3.57e-57 | 186 |
| Msa1059420 | MtrunA17_Chr8g0389641 | 45.226 | 199 | 99 | 4 | 12 | 208 | 11 | 201 | 2.17e-54 | 177 |
| Msa1059420 | MtrunA17_Chr1g0161951 | 34.122 | 296 | 180 | 7 | 5 | 288 | 1 | 293 | 2.92e-53 | 176 |
| Msa1059420 | MtrunA17_Chr4g0028221 | 36.218 | 312 | 159 | 12 | 5 | 286 | 3 | 304 | 1.19e-52 | 174 |
| Msa1059420 | MtrunA17_Chr2g0327411 | 38.462 | 273 | 148 | 11 | 25 | 286 | 46 | 309 | 5.19e-51 | 170 |
| Msa1059420 | MtrunA17_Chr8g0365231 | 35.740 | 277 | 149 | 8 | 31 | 287 | 44 | 311 | 1.50e-50 | 169 |
| Msa1059420 | MtrunA17_Chr7g0264731 | 37.591 | 274 | 150 | 9 | 25 | 287 | 29 | 292 | 1.50e-50 | 168 |
| Msa1059420 | MtrunA17_Chr1g0180451 | 36.184 | 304 | 154 | 11 | 11 | 286 | 3 | 294 | 2.11e-49 | 165 |
| Msa1059420 | MtrunA17_Chr8g0382041 | 36.471 | 255 | 148 | 8 | 31 | 276 | 32 | 281 | 2.26e-49 | 166 |
| Msa1059420 | MtrunA17_Chr5g0410621 | 34.496 | 258 | 156 | 6 | 31 | 278 | 40 | 294 | 4.82e-48 | 163 |
| Msa1059420 | MtrunA17_Chr8g0390201 | 40.500 | 200 | 108 | 5 | 98 | 286 | 10 | 209 | 3.01e-47 | 157 |
| Msa1059420 | MtrunA17_Chr4g0072681 | 40.175 | 229 | 120 | 7 | 70 | 286 | 20 | 243 | 7.27e-47 | 157 |
| Msa1059420 | MtrunA17_Chr8g0350711 | 34.694 | 147 | 89 | 3 | 55 | 201 | 54 | 193 | 1.87e-16 | 76.6 |
| Msa1059420 | MtrunA17_Chr4g0072641 | 34.127 | 126 | 61 | 5 | 156 | 278 | 30 | 136 | 6.94e-16 | 73.2 |
| Msa1059420 | MtrunA17_Chr8g0374231 | 33.010 | 103 | 63 | 4 | 192 | 288 | 1 | 103 | 8.91e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1059420 | AT4G13080.1 | 50.342 | 292 | 125 | 6 | 9 | 287 | 8 | 292 | 1.58e-97 | 289 |
| Msa1059420 | AT4G13090.1 | 53.091 | 275 | 113 | 6 | 12 | 279 | 13 | 278 | 3.35e-97 | 288 |
| Msa1059420 | AT3G25050.1 | 49.135 | 289 | 126 | 8 | 10 | 286 | 10 | 289 | 5.80e-91 | 272 |
| Msa1059420 | AT2G06850.1 | 45.105 | 286 | 144 | 6 | 9 | 287 | 12 | 291 | 9.08e-81 | 246 |
| Msa1059420 | AT5G13870.2 | 43.416 | 281 | 150 | 4 | 3 | 279 | 2 | 277 | 2.98e-80 | 244 |
| Msa1059420 | AT5G13870.1 | 43.416 | 281 | 150 | 4 | 3 | 279 | 2 | 277 | 2.98e-80 | 244 |
| Msa1059420 | AT5G13870.3 | 43.416 | 281 | 150 | 4 | 3 | 279 | 2 | 277 | 2.98e-80 | 244 |
| Msa1059420 | AT5G65730.1 | 42.807 | 285 | 148 | 8 | 12 | 287 | 13 | 291 | 1.22e-76 | 235 |
| Msa1059420 | AT4G37800.1 | 41.812 | 287 | 156 | 6 | 1 | 282 | 2 | 282 | 1.23e-75 | 233 |
| Msa1059420 | AT1G11545.1 | 42.612 | 291 | 151 | 9 | 9 | 288 | 16 | 301 | 6.85e-75 | 231 |
| Msa1059420 | AT2G06850.2 | 47.414 | 232 | 110 | 5 | 63 | 287 | 5 | 231 | 5.02e-69 | 214 |
| Msa1059420 | AT2G14620.1 | 41.528 | 301 | 158 | 8 | 1 | 288 | 1 | 296 | 4.05e-68 | 214 |
| Msa1059420 | AT4G25810.1 | 42.759 | 290 | 143 | 10 | 9 | 286 | 5 | 283 | 2.53e-67 | 211 |
| Msa1059420 | AT3G48580.1 | 43.462 | 260 | 125 | 7 | 31 | 286 | 32 | 273 | 4.73e-67 | 210 |
| Msa1059420 | AT3G23730.1 | 41.328 | 271 | 147 | 6 | 15 | 278 | 9 | 274 | 3.54e-66 | 209 |
| Msa1059420 | AT4G28850.1 | 36.913 | 298 | 165 | 9 | 1 | 286 | 1 | 287 | 4.99e-65 | 206 |
| Msa1059420 | AT5G57550.1 | 39.310 | 290 | 157 | 8 | 8 | 287 | 3 | 283 | 1.14e-64 | 204 |
| Msa1059420 | AT4G03210.1 | 39.100 | 289 | 156 | 8 | 10 | 287 | 6 | 285 | 2.00e-64 | 204 |
| Msa1059420 | AT5G57560.1 | 40.702 | 285 | 149 | 8 | 13 | 286 | 6 | 281 | 2.91e-64 | 203 |
| Msa1059420 | AT4G14130.1 | 40.590 | 271 | 150 | 5 | 14 | 278 | 7 | 272 | 6.74e-63 | 200 |
| Msa1059420 | AT4G30270.1 | 39.362 | 282 | 143 | 7 | 13 | 286 | 4 | 265 | 4.84e-62 | 197 |
| Msa1059420 | AT4G25820.1 | 39.394 | 297 | 161 | 8 | 1 | 288 | 1 | 287 | 2.20e-61 | 196 |
| Msa1059420 | AT3G48580.3 | 44.105 | 229 | 107 | 6 | 62 | 286 | 3 | 214 | 5.02e-61 | 193 |
| Msa1059420 | AT5G57540.1 | 41.045 | 268 | 140 | 7 | 32 | 289 | 25 | 284 | 5.81e-61 | 195 |
| Msa1059420 | AT2G01850.1 | 36.111 | 288 | 173 | 6 | 10 | 288 | 7 | 292 | 8.10e-60 | 194 |
| Msa1059420 | AT5G57530.1 | 39.781 | 274 | 135 | 8 | 32 | 289 | 26 | 285 | 8.89e-60 | 192 |
| Msa1059420 | AT2G14620.2 | 45.339 | 236 | 115 | 6 | 62 | 288 | 16 | 246 | 1.95e-59 | 190 |
| Msa1059420 | AT1G14720.1 | 37.455 | 275 | 164 | 5 | 10 | 278 | 7 | 279 | 2.26e-59 | 192 |
| Msa1059420 | AT5G48070.1 | 38.732 | 284 | 155 | 8 | 1 | 279 | 1 | 270 | 6.68e-59 | 190 |
| Msa1059420 | AT2G14620.3 | 45.374 | 227 | 110 | 6 | 71 | 288 | 14 | 235 | 2.48e-57 | 184 |
| Msa1059420 | AT2G18800.1 | 35.294 | 306 | 171 | 8 | 4 | 289 | 1 | 299 | 6.55e-56 | 182 |
| Msa1059420 | AT4G03210.2 | 43.162 | 234 | 115 | 7 | 65 | 287 | 31 | 257 | 1.45e-55 | 181 |
| Msa1059420 | AT4G30290.1 | 40.876 | 274 | 143 | 8 | 11 | 279 | 6 | 265 | 2.12e-54 | 178 |
| Msa1059420 | AT4G30280.1 | 39.781 | 274 | 146 | 8 | 11 | 279 | 11 | 270 | 2.72e-54 | 178 |
| Msa1059420 | AT1G65310.1 | 41.502 | 253 | 133 | 7 | 32 | 279 | 28 | 270 | 2.78e-53 | 175 |
| Msa1059420 | AT1G65310.2 | 41.502 | 253 | 133 | 7 | 32 | 279 | 50 | 292 | 3.38e-53 | 176 |
| Msa1059420 | AT3G48580.2 | 38.846 | 260 | 117 | 8 | 31 | 286 | 32 | 253 | 1.63e-51 | 170 |
| Msa1059420 | AT1G32170.1 | 33.916 | 286 | 173 | 8 | 5 | 278 | 1 | 282 | 6.35e-50 | 168 |
| Msa1059420 | AT1G10550.1 | 37.402 | 254 | 140 | 7 | 51 | 287 | 59 | 310 | 2.49e-49 | 166 |
| Msa1059420 | AT3G44990.1 | 37.248 | 298 | 147 | 12 | 16 | 286 | 6 | 290 | 3.16e-49 | 165 |
| Msa1059420 | AT2G36870.1 | 36.462 | 277 | 147 | 11 | 25 | 286 | 35 | 297 | 9.25e-46 | 156 |
| Msa1059420 | AT4G18990.1 | 31.818 | 264 | 160 | 6 | 33 | 278 | 40 | 301 | 5.33e-44 | 153 |
| Msa1059420 | AT4G18990.2 | 30.804 | 224 | 133 | 6 | 77 | 278 | 4 | 227 | 4.84e-34 | 125 |
| Msa1059420 | AT2G36870.2 | 41.216 | 148 | 77 | 4 | 25 | 166 | 35 | 178 | 6.12e-28 | 106 |
Find 78 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTACCATTCCACCATAAA+TGG | 0.135662 | 7_2:+45673358 | None:intergenic |
| CTCTCATTTGATAAGATTTC+AGG | 0.163732 | 7_2:-45676936 | Msa1059420:intron |
| ACTGCTATTCTCCCCATTTA+TGG | 0.204526 | 7_2:-45673371 | Msa1059420:CDS |
| TCAAAATTGGAATATTCTTC+TGG | 0.215116 | 7_2:-45675614 | Msa1059420:CDS |
| CTGGAAGCAAGCACCTTTCT+TGG | 0.228630 | 7_2:-45673451 | Msa1059420:CDS |
| ACATTTGTTTGCAATGTATA+AGG | 0.250417 | 7_2:+45674326 | None:intergenic |
| AAGGGTGCACTTACACTATT+TGG | 0.260280 | 7_2:+45674207 | None:intergenic |
| GGTGGAATGGTAAGAAATAT+TGG | 0.264713 | 7_2:-45673350 | Msa1059420:CDS |
| TGAGATTGACTTTGAATTCT+TGG | 0.286312 | 7_2:-45674363 | Msa1059420:CDS |
| AGCTGGGTTCAGATCAAAAT+TGG | 0.286380 | 7_2:-45675627 | Msa1059420:CDS |
| CATATTCTCTTTGTTGTTGT+GGG | 0.287359 | 7_2:+45673319 | None:intergenic |
| TTCCAAATGTTCAACATTCA+TGG | 0.298583 | 7_2:-45673423 | Msa1059420:CDS |
| AATATTCTTCTGGGTTCTTT+CGG | 0.340619 | 7_2:-45675604 | Msa1059420:CDS |
| CCTGTTCTTGAATATCCTAA+TGG | 0.346243 | 7_2:+45673569 | None:intergenic |
| TACATAAAGAATGTCAAATT+AGG | 0.349402 | 7_2:-45673242 | Msa1059420:CDS |
| GAATGTTGAACATTTGGAAT+TGG | 0.353311 | 7_2:+45673427 | None:intergenic |
| TCATATTCTCTTTGTTGTTG+TGG | 0.366911 | 7_2:+45673318 | None:intergenic |
| TTCATACATATGGAATCCTT+TGG | 0.369402 | 7_2:-45674238 | Msa1059420:CDS |
| AACTCCTAGTGAGTCCTTGC+TGG | 0.377504 | 7_2:+45675565 | None:intergenic |
| CTTACCATTCCACCATAAAT+GGG | 0.387944 | 7_2:+45673359 | None:intergenic |
| ATGTGGATGAAACACCCATT+AGG | 0.403715 | 7_2:-45673584 | Msa1059420:CDS |
| TTCTCCAATGTGTAGGAGCT+GGG | 0.411737 | 7_2:-45675643 | Msa1059420:intron |
| CAAAATTGGAATATTCTTCT+GGG | 0.412588 | 7_2:-45675613 | Msa1059420:CDS |
| GTGGAATGGTAAGAAATATT+GGG | 0.416621 | 7_2:-45673349 | Msa1059420:CDS |
| AGCCATGAATGTTGAACATT+TGG | 0.424054 | 7_2:+45673421 | None:intergenic |
| TATGTATGAAAATCGATTGT+TGG | 0.426647 | 7_2:+45674251 | None:intergenic |
| TTCAAAGGCCTTTGAACACT+TGG | 0.430471 | 7_2:-45674399 | Msa1059420:CDS |
| AATGTTGAACATTTGGAATT+GGG | 0.432985 | 7_2:+45673428 | None:intergenic |
| GAGATTGACTTTGAATTCTT+GGG | 0.443026 | 7_2:-45674362 | Msa1059420:CDS |
| TTACAGTTAGCATATGGAAT+GGG | 0.447705 | 7_2:-45673506 | Msa1059420:CDS |
| CTGTTCTTGAATATCCTAAT+GGG | 0.448806 | 7_2:+45673570 | None:intergenic |
| GGGGAACCATGGTCATCTAA+TGG | 0.461781 | 7_2:-45673486 | Msa1059420:CDS |
| TGCATGTTACAGTTAGCATA+TGG | 0.473706 | 7_2:-45673512 | Msa1059420:CDS |
| CTATTTGGTGTTGGTTCCAA+AGG | 0.483927 | 7_2:+45674222 | None:intergenic |
| AACAGAACTACAAGGTTACA+TGG | 0.489277 | 7_2:-45677004 | Msa1059420:CDS |
| ATTTGGAATTGGGCCAAGAA+AGG | 0.489737 | 7_2:+45673438 | None:intergenic |
| ATAATTGAAGCTTACTTCAA+AGG | 0.490040 | 7_2:-45674414 | Msa1059420:intron |
| CCATTAGGATATTCAAGAAC+AGG | 0.490637 | 7_2:-45673569 | Msa1059420:CDS |
| GCACTTACACTATTTGGTGT+TGG | 0.490892 | 7_2:+45674213 | None:intergenic |
| AATGTGTTTGCAACTGATGA+AGG | 0.507836 | 7_2:-45674308 | Msa1059420:CDS |
| ATGTAACCTTGTAGTTCTGT+TGG | 0.516191 | 7_2:+45677006 | None:intergenic |
| GAGAACAAAGGCATAGTCTC+TGG | 0.516823 | 7_2:-45674280 | Msa1059420:CDS |
| TTTGAATTCTTGGGCAACAA+AGG | 0.519467 | 7_2:-45674353 | Msa1059420:CDS |
| AGCTTTGCTAGCACATATCA+AGG | 0.520811 | 7_2:+45677043 | None:intergenic |
| GGACTCACTAGGAGTTGTTA+CGG | 0.523311 | 7_2:-45675558 | Msa1059420:CDS |
| TTGTTTGAGCAGACCAGCCA+TGG | 0.541952 | 7_2:+45677432 | None:intergenic |
| ATTCAAGAACAGGTCAAACA+TGG | 0.543502 | 7_2:-45673559 | Msa1059420:CDS |
| GGCTGCCAATCAAATAATCC+AGG | 0.548463 | 7_2:-45673402 | Msa1059420:CDS |
| TCTCCCCATTTATGGTGGAA+TGG | 0.549057 | 7_2:-45673363 | Msa1059420:CDS |
| AATTCTTGGGCAACAAAGGA+GGG | 0.550446 | 7_2:-45674349 | Msa1059420:CDS |
| TCAAAGGCCTTTGAACACTT+GGG | 0.552674 | 7_2:-45674398 | Msa1059420:CDS |
| TTTCCCTCCCAAGTGTTCAA+AGG | 0.555549 | 7_2:+45674391 | None:intergenic |
| GAATTCTTGGGCAACAAAGG+AGG | 0.559297 | 7_2:-45674350 | Msa1059420:CDS |
| CTAATGGTAAGAAAATTGAC+TGG | 0.563990 | 7_2:-45673470 | Msa1059420:CDS |
| GTTACAGTTAGCATATGGAA+TGG | 0.566053 | 7_2:-45673507 | Msa1059420:CDS |
| GCTATTCTCCCCATTTATGG+TGG | 0.569788 | 7_2:-45673368 | Msa1059420:CDS |
| AGGCCTTTGAACACTTGGGA+GGG | 0.572586 | 7_2:-45674394 | Msa1059420:CDS |
| GAGAATATGAAGATGTGAGG+AGG | 0.589124 | 7_2:-45673305 | Msa1059420:CDS |
| GTAACATGCATTTGTTGTGA+AGG | 0.597132 | 7_2:+45673525 | None:intergenic |
| ATGTGTTTGCAACTGATGAA+GGG | 0.602526 | 7_2:-45674307 | Msa1059420:CDS |
| AAGGCCTTTGAACACTTGGG+AGG | 0.606144 | 7_2:-45674395 | Msa1059420:CDS |
| ATACCCAGCAAGGACTCACT+AGG | 0.610289 | 7_2:-45675569 | Msa1059420:CDS |
| ACAGAACTACAAGGTTACAT+GGG | 0.615473 | 7_2:-45677003 | Msa1059420:CDS |
| ATGTGCTAGCAAAGCTGTTG+AGG | 0.616184 | 7_2:-45677036 | Msa1059420:CDS |
| TTCTTACCATTAGATGACCA+TGG | 0.616954 | 7_2:+45673480 | None:intergenic |
| AAAGAGAATATGAAGATGTG+AGG | 0.618781 | 7_2:-45673308 | Msa1059420:CDS |
| TTACCATTCCACCATAAATG+GGG | 0.625075 | 7_2:+45673360 | None:intergenic |
| CTGGTCTGCTCAAACAACAA+AGG | 0.637545 | 7_2:-45677426 | Msa1059420:intron |
| GCATATGGAATGGGGAACCA+TGG | 0.640508 | 7_2:-45673497 | Msa1059420:CDS |
| TTCAAGAACAGGTCAAACAT+GGG | 0.644348 | 7_2:-45673558 | Msa1059420:CDS |
| AAGCTTCCAACAGAACTACA+AGG | 0.649713 | 7_2:-45677012 | Msa1059420:CDS |
| TACAGTTAGCATATGGAATG+GGG | 0.653679 | 7_2:-45673505 | Msa1059420:CDS |
| GAGAATTAAGATACCCAGCA+AGG | 0.659349 | 7_2:-45675579 | Msa1059420:CDS |
| TATGACTACTGTTCTGACAG+AGG | 0.664302 | 7_2:-45673270 | Msa1059420:CDS |
| TGTGTTTGCAACTGATGAAG+GGG | 0.665143 | 7_2:-45674306 | Msa1059420:CDS |
| CAGAACTACAAGGTTACATG+GGG | 0.694209 | 7_2:-45677002 | Msa1059420:CDS |
| GTGTTTGCAACTGATGAAGG+GGG | 0.715360 | 7_2:-45674305 | Msa1059420:CDS |
| TGTTTGCAACTGATGAAGGG+GGG | 0.755355 | 7_2:-45674304 | Msa1059420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATAAAATAAAATAA+GGG | + | chr7_2:45673892-45673911 | None:intergenic | 0.0% |
| !! | AAATAAAATAAAATAAAATA+AGG | + | chr7_2:45673893-45673912 | None:intergenic | 0.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674842-45674861 | None:intergenic | 100.0% |
| !! | AAAAAAAAAAAAGTTTATCG+TGG | - | chr7_2:45674908-45674927 | Msa1059420:intron | 15.0% |
| !! | AAAAAAAAAGCTAAAACTAA+TGG | - | chr7_2:45675289-45675308 | Msa1059420:intron | 15.0% |
| !! | AGATGTTTAGAAAAATAAAA+GGG | + | chr7_2:45675529-45675548 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACCAAAACTAA+CGG | + | chr7_2:45675876-45675895 | None:intergenic | 15.0% |
| !! | ACTATAAAACTATAAGATAA+AGG | + | chr7_2:45676030-45676049 | None:intergenic | 15.0% |
| !!! | AGTTTTATAGTTTTAAATTG+CGG | - | chr7_2:45676039-45676058 | Msa1059420:intron | 15.0% |
| !! | ATTAAAAATGAAGTATATAC+TGG | + | chr7_2:45676956-45676975 | None:intergenic | 15.0% |
| !!! | ACATTTTATTTTGATAAAGT+TGG | + | chr7_2:45677003-45677022 | None:intergenic | 15.0% |
| !! | ATCAAAATAAATTATTGATG+TGG | - | chr7_2:45677033-45677052 | Msa1059420:CDS | 15.0% |
| !!! | GAAACATTATTAAAATTTTC+AGG | - | chr7_2:45677058-45677077 | Msa1059420:CDS | 15.0% |
| !! | TGATTATATGAACTAATCAA+TGG | - | chr7_2:45673560-45673579 | Msa1059420:CDS | 20.0% |
| !! | AAACTATGTTTACTTCATTT+AGG | - | chr7_2:45673832-45673851 | Msa1059420:intron | 20.0% |
| !!! | GTTTGACCATTTTTTTTTTT+TGG | - | chr7_2:45673860-45673879 | Msa1059420:intron | 20.0% |
| !! | ACGAATCCAAAAAAAAAAAA+TGG | + | chr7_2:45673869-45673888 | None:intergenic | 20.0% |
| !!! | AATAAGTTTTTTTACACTCA+CGG | - | chr7_2:45674107-45674126 | Msa1059420:intron | 20.0% |
| !! | GAATAATTATATACCAAAAG+TGG | - | chr7_2:45674230-45674249 | Msa1059420:CDS | 20.0% |
| !!! | ATGTTTATATTTTGTGATAG+AGG | + | chr7_2:45674464-45674483 | None:intergenic | 20.0% |
| !!! | AATGTATTTGGTCTAAATTT+TGG | - | chr7_2:45674495-45674514 | Msa1059420:intron | 20.0% |
| !! | CTATGTATGAAATTTATCTT+AGG | - | chr7_2:45675138-45675157 | Msa1059420:intron | 20.0% |
| !! | GAGATGTTTAGAAAAATAAA+AGG | + | chr7_2:45675530-45675549 | None:intergenic | 20.0% |
| !! | ATTCTCCTTAATTTCAATTA+TGG | - | chr7_2:45675652-45675671 | Msa1059420:intron | 20.0% |
| !! | TTTAACTGAAACTTAATAGA+AGG | - | chr7_2:45675895-45675914 | Msa1059420:intron | 20.0% |
| !! | CGTAGTTAAATATTGATATT+TGG | + | chr7_2:45676191-45676210 | None:intergenic | 20.0% |
| !! | ATTACCAAAAAGAAAAAGAA+AGG | + | chr7_2:45676237-45676256 | None:intergenic | 20.0% |
| !! | ATTTGAATTGGTTAAATGAA+GGG | + | chr7_2:45676879-45676898 | None:intergenic | 20.0% |
| !! | TATTTGAATTGGTTAAATGA+AGG | + | chr7_2:45676880-45676899 | None:intergenic | 20.0% |
| !! | ATTGAAAAAAAAATTGTCCT+CGG | - | chr7_2:45676930-45676949 | Msa1059420:intron | 20.0% |
| !!! | TAAAATTTTCAGGTTTTATG+TGG | - | chr7_2:45677068-45677087 | Msa1059420:CDS | 20.0% |
| !! | TACATAAAGAATGTCAAATT+AGG | - | chr7_2:45677427-45677446 | Msa1059420:CDS | 20.0% |
| !!! | TATTTTTTGTGTTTTTCGTG+TGG | + | chr7_2:45673392-45673411 | None:intergenic | 25.0% |
| ! | CATACATATTGGTAAGATAA+AGG | + | chr7_2:45673936-45673955 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTTTTACACTCAC+GGG | - | chr7_2:45674108-45674127 | Msa1059420:intron | 25.0% |
| ! | AGTTGTTATAAACAACTCAA+AGG | + | chr7_2:45674179-45674198 | None:intergenic | 25.0% |
| ! | TTATATACCAAAAGTGGTAA+AGG | - | chr7_2:45674236-45674255 | Msa1059420:CDS | 25.0% |
| ! | TCAACATGAACAAATGTATT+TGG | - | chr7_2:45674483-45674502 | Msa1059420:intron | 25.0% |
| ! | TCAGCAAAAATTAATGTAGT+TGG | + | chr7_2:45674522-45674541 | None:intergenic | 25.0% |
| !!! | TTGCACAATTACATTAGTTT+TGG | + | chr7_2:45674819-45674838 | None:intergenic | 25.0% |
| ! | ATTGATACAATCCTTTACAT+TGG | - | chr7_2:45674942-45674961 | Msa1059420:intron | 25.0% |
| ! | TTGATACAATCCTTTACATT+GGG | - | chr7_2:45674943-45674962 | Msa1059420:intron | 25.0% |
| ! | TTTGATAAAACCCAATGTAA+AGG | + | chr7_2:45674956-45674975 | None:intergenic | 25.0% |
| ! | TCAAAATTGGAATATTCTTC+TGG | - | chr7_2:45675055-45675074 | Msa1059420:intron | 25.0% |
| ! | CAAAATTGGAATATTCTTCT+GGG | - | chr7_2:45675056-45675075 | Msa1059420:intron | 25.0% |
| !!! | TTTTTTTTAACCGACTTAAC+AGG | + | chr7_2:45675276-45675295 | None:intergenic | 25.0% |
| !! | TCTGTATTTTCACCTAATTT+TGG | + | chr7_2:45675988-45676007 | None:intergenic | 25.0% |
| !! | AGTACCTTTCTTTTTCTTTT+TGG | - | chr7_2:45676230-45676249 | Msa1059420:intron | 25.0% |
| ! | ATAATTGAAGCTTACTTCAA+AGG | - | chr7_2:45676255-45676274 | Msa1059420:intron | 25.0% |
| ! | ACATTTGTTTGCAATGTATA+AGG | + | chr7_2:45676346-45676365 | None:intergenic | 25.0% |
| ! | TATGTATGAAAATCGATTGT+TGG | + | chr7_2:45676421-45676440 | None:intergenic | 25.0% |
| !!! | ACAATCGATTTTCATACATA+TGG | - | chr7_2:45676421-45676440 | Msa1059420:intron | 25.0% |
| ! | GAAAATATGGAACTTGAATA+TGG | + | chr7_2:45676562-45676581 | None:intergenic | 25.0% |
| ! | ATGAAAGAATTAACGTTTAG+CGG | - | chr7_2:45676696-45676715 | Msa1059420:intron | 25.0% |
| ! | TTTGAATTGGTTAAATGAAG+GGG | + | chr7_2:45676878-45676897 | None:intergenic | 25.0% |
| ! | CAAATGGTAACTATTTGAAT+TGG | + | chr7_2:45676891-45676910 | None:intergenic | 25.0% |
| ! | TGTCTCTATTAGATTTCAAA+TGG | + | chr7_2:45676907-45676926 | None:intergenic | 25.0% |
| !! | AAAGTTGGACATGTTTATTT+TGG | + | chr7_2:45676988-45677007 | None:intergenic | 25.0% |
| !! | AATGTTGAACATTTGGAATT+GGG | + | chr7_2:45677244-45677263 | None:intergenic | 25.0% |
| !! | ATTTTCCTGGATTATTTGAT+TGG | + | chr7_2:45677275-45677294 | None:intergenic | 25.0% |
| CTCTCATTTGATAAGATTTC+AGG | - | chr7_2:45673733-45673752 | Msa1059420:intron | 30.0% | |
| TTGCAATTCGACATGTATAT+TGG | + | chr7_2:45674051-45674070 | None:intergenic | 30.0% | |
| GTTATAAACAACTCAAAGGA+GGG | + | chr7_2:45674175-45674194 | None:intergenic | 30.0% | |
| TGTTATAAACAACTCAAAGG+AGG | + | chr7_2:45674176-45674195 | None:intergenic | 30.0% | |
| ! | ATACTAACCTTTACCACTTT+TGG | + | chr7_2:45674246-45674265 | None:intergenic | 30.0% |
| GAGATGCTTAAACTATTCTA+CGG | + | chr7_2:45674414-45674433 | None:intergenic | 30.0% | |
| ACTATTGTATTGTACTTGCT+CGG | + | chr7_2:45674569-45674588 | None:intergenic | 30.0% | |
| ACTATTGTATTGTACTTGCT+CGG | + | chr7_2:45674569-45674588 | None:intergenic | 30.0% | |
| AGTACCACGATAAACTTATT+GGG | + | chr7_2:45674879-45674898 | None:intergenic | 30.0% | |
| AAGTACCACGATAAACTTAT+TGG | + | chr7_2:45674880-45674899 | None:intergenic | 30.0% | |
| !! | TTTACTTTTCTCCAATGTGT+AGG | - | chr7_2:45675019-45675038 | Msa1059420:intron | 30.0% |
| AATATTCTTCTGGGTTCTTT+CGG | - | chr7_2:45675065-45675084 | Msa1059420:intron | 30.0% | |
| !!! | CACTTTTTTTTGTTTGCCAT+TGG | - | chr7_2:45675215-45675234 | Msa1059420:intron | 30.0% |
| ! | CAAAAGTTTTACAAACTGCA+GGG | + | chr7_2:45675926-45675945 | None:intergenic | 30.0% |
| TTGCGCCATAATTGAAATTA+AGG | + | chr7_2:45675660-45675679 | None:intergenic | 30.0% | |
| ! | CAAAAGTTTTACAAACTGCA+GGG | - | chr7_2:45675926-45675945 | Msa1059420:intron | 30.0% |
| !!! | TGCTTTTTTTTGTTTGGCAT+TGG | + | chr7_2:45675953-45675972 | None:intergenic | 30.0% |
| !!! | TCCTTGTGCTTTTTTTTGTT+TGG | + | chr7_2:45675959-45675978 | None:intergenic | 30.0% |
| TAAAGGCTTAAATGTGTGTT+TGG | + | chr7_2:45676013-45676032 | None:intergenic | 30.0% | |
| CGATAAAATGCAGACAAATA+TGG | - | chr7_2:45676097-45676116 | Msa1059420:intron | 30.0% | |
| ! | TGAGATTGACTTTGAATTCT+TGG | - | chr7_2:45676306-45676325 | Msa1059420:intron | 30.0% |
| ! | GAGATTGACTTTGAATTCTT+GGG | - | chr7_2:45676307-45676326 | Msa1059420:intron | 30.0% |
| TTCATACATATGGAATCCTT+TGG | - | chr7_2:45676431-45676450 | Msa1059420:intron | 30.0% | |
| ! | TTGGCTTTCACAATCAAAAT+CGG | - | chr7_2:45676608-45676627 | Msa1059420:intron | 30.0% |
| TGAAAACAATCTAGTTGAGA+GGG | + | chr7_2:45676770-45676789 | None:intergenic | 30.0% | |
| ATGAAAACAATCTAGTTGAG+AGG | + | chr7_2:45676771-45676790 | None:intergenic | 30.0% | |
| !!! | GACATGTTTATTTTGGACTA+TGG | + | chr7_2:45676981-45677000 | None:intergenic | 30.0% |
| CTGTTCTTGAATATCCTAAT+GGG | + | chr7_2:45677102-45677121 | None:intergenic | 30.0% | |
| TTACAGTTAGCATATGGAAT+GGG | - | chr7_2:45677163-45677182 | Msa1059420:intron | 30.0% | |
| CTAATGGTAAGAAAATTGAC+TGG | - | chr7_2:45677199-45677218 | Msa1059420:intron | 30.0% | |
| ! | GAATGTTGAACATTTGGAAT+TGG | + | chr7_2:45677245-45677264 | None:intergenic | 30.0% |
| TTCCAAATGTTCAACATTCA+TGG | - | chr7_2:45677246-45677265 | Msa1059420:intron | 30.0% | |
| GTGGAATGGTAAGAAATATT+GGG | - | chr7_2:45677320-45677339 | Msa1059420:intron | 30.0% | |
| !! | CATATTCTCTTTGTTGTTGT+GGG | + | chr7_2:45677353-45677372 | None:intergenic | 30.0% |
| !! | TCATATTCTCTTTGTTGTTG+TGG | + | chr7_2:45677354-45677373 | None:intergenic | 30.0% |
| AAAGAGAATATGAAGATGTG+AGG | - | chr7_2:45677361-45677380 | Msa1059420:intron | 30.0% | |
| TCTTAGTCAAGATATCTCGA+CGG | - | chr7_2:45673287-45673306 | Msa1059420:CDS | 35.0% | |
| ! | ATGTAACCTTGTAGTTCTGT+TGG | + | chr7_2:45673666-45673685 | None:intergenic | 35.0% |
| AACAGAACTACAAGGTTACA+TGG | - | chr7_2:45673665-45673684 | Msa1059420:intron | 35.0% | |
| ACAGAACTACAAGGTTACAT+GGG | - | chr7_2:45673666-45673685 | Msa1059420:intron | 35.0% | |
| ! | CACGTTTTCTTTCTTGACAA+CGG | - | chr7_2:45673697-45673716 | Msa1059420:intron | 35.0% |
| !!! | ATGCACCGTTTGCTTTTTAA+CGG | - | chr7_2:45673953-45673972 | Msa1059420:intron | 35.0% |
| ! | GAGGAAGTGTATATATGTAG+AGG | + | chr7_2:45674445-45674464 | None:intergenic | 35.0% |
| TACCACGATAAACTTATTGG+GGG | + | chr7_2:45674877-45674896 | None:intergenic | 35.0% | |
| GTACCACGATAAACTTATTG+GGG | + | chr7_2:45674878-45674897 | None:intergenic | 35.0% | |
| CTTAGGCTTAAATGTGTGTT+TGG | - | chr7_2:45675155-45675174 | Msa1059420:intron | 35.0% | |
| !! | CTTTCACCCAATTTTGACAT+TGG | - | chr7_2:45675186-45675205 | Msa1059420:intron | 35.0% |
| ! | GGCAAACAAAAAAAAGTGCA+GGG | + | chr7_2:45675213-45675232 | None:intergenic | 35.0% |
| ! | TGGCAAACAAAAAAAAGTGC+AGG | + | chr7_2:45675214-45675233 | None:intergenic | 35.0% |
| ! | CCAAAAGTTTTACAAACTGC+AGG | + | chr7_2:45675925-45675944 | None:intergenic | 35.0% |
| ! | CCTGCAGTTTGTAAAACTTT+TGG | - | chr7_2:45675240-45675259 | Msa1059420:intron | 35.0% |
| ! | TTTTAGTCCTCCTGTTAAGT+CGG | - | chr7_2:45675263-45675282 | Msa1059420:intron | 35.0% |
| !! | TTTTTAACCGACTTAACAGG+AGG | + | chr7_2:45675273-45675292 | None:intergenic | 35.0% |
| ! | CCTGCAGTTTGTAAAACTTT+TGG | + | chr7_2:45675240-45675259 | None:intergenic | 35.0% |
| ! | CCAAAAGTTTTACAAACTGC+AGG | - | chr7_2:45675925-45675944 | Msa1059420:intron | 35.0% |
| ! | GCCAAACAAAAAAAAGCACA+AGG | - | chr7_2:45675955-45675974 | Msa1059420:intron | 35.0% |
| CAAGGACTAATGCCAAAATT+AGG | - | chr7_2:45675973-45675992 | Msa1059420:intron | 35.0% | |
| TTAAATTGCGGTTGTGATTG+TGG | - | chr7_2:45676051-45676070 | Msa1059420:intron | 35.0% | |
| CAAAACAAATTCGAGTGCAA+TGG | + | chr7_2:45676152-45676171 | None:intergenic | 35.0% | |
| TTTGAATTCTTGGGCAACAA+AGG | - | chr7_2:45676316-45676335 | Msa1059420:intron | 35.0% | |
| AATGTGTTTGCAACTGATGA+AGG | - | chr7_2:45676361-45676380 | Msa1059420:intron | 35.0% | |
| ATGTGTTTGCAACTGATGAA+GGG | - | chr7_2:45676362-45676381 | Msa1059420:intron | 35.0% | |
| ! | CATCCATGCATTTAAGACAT+CGG | - | chr7_2:45676510-45676529 | Msa1059420:intron | 35.0% |
| TGGCTTTCACAATCAAAATC+GGG | - | chr7_2:45676609-45676628 | Msa1059420:intron | 35.0% | |
| ATCTCGAATGTGTAAGCAAA+AGG | - | chr7_2:45676643-45676662 | Msa1059420:intron | 35.0% | |
| TCTCGAATGTGTAAGCAAAA+GGG | - | chr7_2:45676644-45676663 | Msa1059420:intron | 35.0% | |
| AAAGGGAATTCAATTTCCTC+CGG | - | chr7_2:45676661-45676680 | Msa1059420:intron | 35.0% | |
| ! | CTTTCATTTTGAATGCTCAC+CGG | + | chr7_2:45676683-45676702 | None:intergenic | 35.0% |
| GAAAACAATCTAGTTGAGAG+GGG | + | chr7_2:45676769-45676788 | None:intergenic | 35.0% | |
| ACTTTGTGTCCTTAAACATG+TGG | + | chr7_2:45676822-45676841 | None:intergenic | 35.0% | |
| CCTGTTCTTGAATATCCTAA+TGG | + | chr7_2:45677103-45677122 | None:intergenic | 35.0% | |
| CCATTAGGATATTCAAGAAC+AGG | - | chr7_2:45677100-45677119 | Msa1059420:intron | 35.0% | |
| ATTCAAGAACAGGTCAAACA+TGG | - | chr7_2:45677110-45677129 | Msa1059420:intron | 35.0% | |
| TTCAAGAACAGGTCAAACAT+GGG | - | chr7_2:45677111-45677130 | Msa1059420:intron | 35.0% | |
| !! | GTAACATGCATTTGTTGTGA+AGG | + | chr7_2:45677147-45677166 | None:intergenic | 35.0% |
| TGCATGTTACAGTTAGCATA+TGG | - | chr7_2:45677157-45677176 | Msa1059420:intron | 35.0% | |
| GTTACAGTTAGCATATGGAA+TGG | - | chr7_2:45677162-45677181 | Msa1059420:intron | 35.0% | |
| TACAGTTAGCATATGGAATG+GGG | - | chr7_2:45677164-45677183 | Msa1059420:intron | 35.0% | |
| TTCTTACCATTAGATGACCA+TGG | + | chr7_2:45677192-45677211 | None:intergenic | 35.0% | |
| AGCCATGAATGTTGAACATT+TGG | + | chr7_2:45677251-45677270 | None:intergenic | 35.0% | |
| ! | GAATAGCAGTCATATTTTCC+TGG | + | chr7_2:45677288-45677307 | None:intergenic | 35.0% |
| TTACCATTCCACCATAAATG+GGG | + | chr7_2:45677312-45677331 | None:intergenic | 35.0% | |
| CTTACCATTCCACCATAAAT+GGG | + | chr7_2:45677313-45677332 | None:intergenic | 35.0% | |
| TCTTACCATTCCACCATAAA+TGG | + | chr7_2:45677314-45677333 | None:intergenic | 35.0% | |
| GGTGGAATGGTAAGAAATAT+TGG | - | chr7_2:45677319-45677338 | Msa1059420:intron | 35.0% | |
| TCTGCTCAAACAACAAAGGT+CGG | - | chr7_2:45673247-45673266 | Msa1059420:CDS | 40.0% | |
| AGCTTTGCTAGCACATATCA+AGG | + | chr7_2:45673629-45673648 | None:intergenic | 40.0% | |
| AAGCTTCCAACAGAACTACA+AGG | - | chr7_2:45673657-45673676 | Msa1059420:intron | 40.0% | |
| CAGAACTACAAGGTTACATG+GGG | - | chr7_2:45673667-45673686 | Msa1059420:intron | 40.0% | |
| AGCAAACGGTGCATACATAT+TGG | + | chr7_2:45673947-45673966 | None:intergenic | 40.0% | |
| !!! | TGCACCGTTTGCTTTTTAAC+GGG | - | chr7_2:45673954-45673973 | Msa1059420:intron | 40.0% |
| GAACCCCGTTAAAAAGCAAA+CGG | + | chr7_2:45673961-45673980 | None:intergenic | 40.0% | |
| CATAAGAGAAGGGTTGGAAA+AGG | + | chr7_2:45674135-45674154 | None:intergenic | 40.0% | |
| ACCACGATAAACTTATTGGG+GGG | + | chr7_2:45674876-45674895 | None:intergenic | 40.0% | |
| AGCTGGGTTCAGATCAAAAT+TGG | - | chr7_2:45675042-45675061 | Msa1059420:intron | 40.0% | |
| GAGAATTAAGATACCCAGCA+AGG | - | chr7_2:45675090-45675109 | Msa1059420:intron | 40.0% | |
| ! | CAAAATTGGGTGAAAGTGCA+AGG | + | chr7_2:45675182-45675201 | None:intergenic | 40.0% |
| CAGGGACCAATGTCAAAATT+GGG | + | chr7_2:45675195-45675214 | None:intergenic | 40.0% | |
| AAAACTAATGGTGTGCCACA+TGG | - | chr7_2:45675301-45675320 | Msa1059420:intron | 40.0% | |
| ! | TTATCTTTTAGTGTGCCACG+TGG | + | chr7_2:45675345-45675364 | None:intergenic | 40.0% |
| !! | TCCATGGTGTTGTCATTGTT+CGG | + | chr7_2:45675429-45675448 | None:intergenic | 40.0% |
| AACAATGACAACACCATGGA+AGG | - | chr7_2:45675429-45675448 | Msa1059420:intron | 40.0% | |
| CAGTATCGTAGCCAAAAAGA+AGG | + | chr7_2:45675461-45675480 | None:intergenic | 40.0% | |
| ! | TTGTCTTTTAGTATGCCACG+TGG | - | chr7_2:45675823-45675842 | Msa1059420:intron | 40.0% |
| !! | AAAACTAACGGTTTGCTACG+TGG | + | chr7_2:45675864-45675883 | None:intergenic | 40.0% |
| !! | ACGTAGCAAACCGTTAGTTT+TGG | - | chr7_2:45675863-45675882 | Msa1059420:intron | 40.0% |
| TTCAAAGGCCTTTGAACACT+TGG | - | chr7_2:45676270-45676289 | Msa1059420:intron | 40.0% | |
| TCAAAGGCCTTTGAACACTT+GGG | - | chr7_2:45676271-45676290 | Msa1059420:intron | 40.0% | |
| AATTCTTGGGCAACAAAGGA+GGG | - | chr7_2:45676320-45676339 | Msa1059420:intron | 40.0% | |
| TGTGTTTGCAACTGATGAAG+GGG | - | chr7_2:45676363-45676382 | Msa1059420:intron | 40.0% | |
| !! | CTATTTGGTGTTGGTTCCAA+AGG | + | chr7_2:45676450-45676469 | None:intergenic | 40.0% |
| !! | GCACTTACACTATTTGGTGT+TGG | + | chr7_2:45676459-45676478 | None:intergenic | 40.0% |
| ! | AAGGGTGCACTTACACTATT+TGG | + | chr7_2:45676465-45676484 | None:intergenic | 40.0% |
| TAAGTGCACCCTTTCTCTTA+CGG | - | chr7_2:45676472-45676491 | Msa1059420:intron | 40.0% | |
| AATCTCGACCGTAAGAGAAA+GGG | + | chr7_2:45676483-45676502 | None:intergenic | 40.0% | |
| CTTTCACAATCAAAATCGGG+AGG | - | chr7_2:45676612-45676631 | Msa1059420:intron | 40.0% | |
| ACCTATGAGACACACAAACT+AGG | - | chr7_2:45676739-45676758 | Msa1059420:intron | 40.0% | |
| ! | ACCTAGTTTGTGTGTCTCAT+AGG | + | chr7_2:45676743-45676762 | None:intergenic | 40.0% |
| ! | ATGAACTGGTTCAAGTGGTA+AGG | + | chr7_2:45676845-45676864 | None:intergenic | 40.0% |
| AATGAAGTATATACTGGCCG+AGG | + | chr7_2:45676950-45676969 | None:intergenic | 40.0% | |
| ATGTGGATGAAACACCCATT+AGG | - | chr7_2:45677085-45677104 | Msa1059420:intron | 40.0% | |
| ! | ATTTGGAATTGGGCCAAGAA+AGG | + | chr7_2:45677234-45677253 | None:intergenic | 40.0% |
| ACTGCTATTCTCCCCATTTA+TGG | - | chr7_2:45677298-45677317 | Msa1059420:intron | 40.0% | |
| GAGAATATGAAGATGTGAGG+AGG | - | chr7_2:45677364-45677383 | Msa1059420:intron | 40.0% | |
| TATGACTACTGTTCTGACAG+AGG | - | chr7_2:45677399-45677418 | Msa1059420:intron | 40.0% | |
| CTGGTCTGCTCAAACAACAA+AGG | - | chr7_2:45673243-45673262 | Msa1059420:CDS | 45.0% | |
| ATGTGCTAGCAAAGCTGTTG+AGG | - | chr7_2:45673633-45673652 | Msa1059420:intron | 45.0% | |
| !!! | GCACCGTTTGCTTTTTAACG+GGG | - | chr7_2:45673955-45673974 | Msa1059420:intron | 45.0% |
| CAACCCTTCTCTTATGCGTT+CGG | - | chr7_2:45674139-45674158 | Msa1059420:intron | 45.0% | |
| GAACCGAACGCATAAGAGAA+GGG | + | chr7_2:45674145-45674164 | None:intergenic | 45.0% | |
| CTTCTCTTATGCGTTCGGTT+CGG | - | chr7_2:45674144-45674163 | Msa1059420:intron | 45.0% | |
| TTCTCTTATGCGTTCGGTTC+GGG | - | chr7_2:45674145-45674164 | Msa1059420:intron | 45.0% | |
| ACGATAAACTTATTGGGGGG+GGG | + | chr7_2:45674873-45674892 | None:intergenic | 45.0% | |
| CACGATAAACTTATTGGGGG+GGG | + | chr7_2:45674874-45674893 | None:intergenic | 45.0% | |
| CCACGATAAACTTATTGGGG+GGG | + | chr7_2:45674875-45674894 | None:intergenic | 45.0% | |
| TTTCTCCAATGTGTAGGAGC+TGG | - | chr7_2:45675025-45675044 | Msa1059420:intron | 45.0% | |
| TTCTCCAATGTGTAGGAGCT+GGG | - | chr7_2:45675026-45675045 | Msa1059420:intron | 45.0% | |
| GGACTCACTAGGAGTTGTTA+CGG | - | chr7_2:45675111-45675130 | Msa1059420:intron | 45.0% | |
| GCAGGGACCAATGTCAAAAT+TGG | + | chr7_2:45675196-45675215 | None:intergenic | 45.0% | |
| TTACAAACTGCAGGGACCAA+TGG | + | chr7_2:45675934-45675953 | None:intergenic | 45.0% | |
| TCCGAACAATGACAACACCA+TGG | - | chr7_2:45675425-45675444 | Msa1059420:intron | 45.0% | |
| AATGACAACACCATGGAAGG+AGG | - | chr7_2:45675432-45675451 | Msa1059420:intron | 45.0% | |
| TTTCCCTCCCAAGTGTTCAA+AGG | + | chr7_2:45676281-45676300 | None:intergenic | 45.0% | |
| GAATTCTTGGGCAACAAAGG+AGG | - | chr7_2:45676319-45676338 | Msa1059420:intron | 45.0% | |
| GTGTTTGCAACTGATGAAGG+GGG | - | chr7_2:45676364-45676383 | Msa1059420:intron | 45.0% | |
| TGTTTGCAACTGATGAAGGG+GGG | - | chr7_2:45676365-45676384 | Msa1059420:intron | 45.0% | |
| ! | GAGAACAAAGGCATAGTCTC+TGG | - | chr7_2:45676389-45676408 | Msa1059420:intron | 45.0% |
| GAATCTCGACCGTAAGAGAA+AGG | + | chr7_2:45676484-45676503 | None:intergenic | 45.0% | |
| CCACCGATGTCTTAAATGCA+TGG | + | chr7_2:45676516-45676535 | None:intergenic | 45.0% | |
| ! | CCATGCATTTAAGACATCGG+TGG | - | chr7_2:45676513-45676532 | Msa1059420:intron | 45.0% |
| ! | TCATTTTGAATGCTCACCGG+AGG | + | chr7_2:45676680-45676699 | None:intergenic | 45.0% |
| AACCGCTGACCACATGTTTA+AGG | - | chr7_2:45676810-45676829 | Msa1059420:intron | 45.0% | |
| GTCCTTAAACATGTGGTCAG+CGG | + | chr7_2:45676815-45676834 | None:intergenic | 45.0% | |
| ! | CAACGATGAACTGGTTCAAG+TGG | + | chr7_2:45676850-45676869 | None:intergenic | 45.0% |
| CACTTGAACCAGTTCATCGT+TGG | - | chr7_2:45676848-45676867 | Msa1059420:intron | 45.0% | |
| GGCTGCCAATCAAATAATCC+AGG | - | chr7_2:45677267-45677286 | Msa1059420:intron | 45.0% | |
| GCTATTCTCCCCATTTATGG+TGG | - | chr7_2:45677301-45677320 | Msa1059420:intron | 45.0% | |
| ! | TCTCCCCATTTATGGTGGAA+TGG | - | chr7_2:45677306-45677325 | Msa1059420:intron | 45.0% |
| !!! | TTATTTTTAACTAAATAAAA+TGG | - | chr7_2:45674772-45674791 | Msa1059420:intron | 5.0% |
| !!! | TTATTTTATAATTGAAAATA+TGG | + | chr7_2:45676575-45676594 | None:intergenic | 5.0% |
| !!! | AAATAAAAATTTGTATTTTT+TGG | - | chr7_2:45676589-45676608 | Msa1059420:intron | 5.0% |
| !!! | AATTTATTTTGATAAAAAAA+TGG | + | chr7_2:45677026-45677045 | None:intergenic | 5.0% |
| CGAACGCATAAGAGAAGGGT+TGG | + | chr7_2:45674141-45674160 | None:intergenic | 50.0% | |
| CGAACCGAACGCATAAGAGA+AGG | + | chr7_2:45674146-45674165 | None:intergenic | 50.0% | |
| ! | TCTCTTATGCGTTCGGTTCG+GGG | - | chr7_2:45674146-45674165 | Msa1059420:intron | 50.0% |
| ATAAACTTATTGGGGGGGGG+GGG | + | chr7_2:45674870-45674889 | None:intergenic | 50.0% | |
| GATAAACTTATTGGGGGGGG+GGG | + | chr7_2:45674871-45674890 | None:intergenic | 50.0% | |
| CGATAAACTTATTGGGGGGG+GGG | + | chr7_2:45674872-45674891 | None:intergenic | 50.0% | |
| CCCCCCCAATAAGTTTATCG+TGG | - | chr7_2:45674872-45674891 | Msa1059420:intron | 50.0% | |
| TGAACCCAGCTCCTACACAT+TGG | + | chr7_2:45675033-45675052 | None:intergenic | 50.0% | |
| ATACCCAGCAAGGACTCACT+AGG | - | chr7_2:45675100-45675119 | Msa1059420:intron | 50.0% | |
| ACTCCTAGTGAGTCCTTGCT+GGG | + | chr7_2:45675106-45675125 | None:intergenic | 50.0% | |
| AACTCCTAGTGAGTCCTTGC+TGG | + | chr7_2:45675107-45675126 | None:intergenic | 50.0% | |
| ! | CGTGTCATGATTGGTCCATG+TGG | + | chr7_2:45675319-45675338 | None:intergenic | 50.0% |
| ! | TCTTTTAGTGTGCCACGTGG+CGG | + | chr7_2:45675342-45675361 | None:intergenic | 50.0% |
| ! | GAAGGAGGTGGCCTTCTTTT+TGG | - | chr7_2:45675447-45675466 | Msa1059420:intron | 50.0% |
| AAGGCCTTTGAACACTTGGG+AGG | - | chr7_2:45676274-45676293 | Msa1059420:intron | 50.0% | |
| AGGCCTTTGAACACTTGGGA+GGG | - | chr7_2:45676275-45676294 | Msa1059420:intron | 50.0% | |
| ATGAAGGGGGGAGAGAACAA+AGG | - | chr7_2:45676377-45676396 | Msa1059420:intron | 50.0% | |
| GCATATGGAATGGGGAACCA+TGG | - | chr7_2:45677172-45677191 | Msa1059420:intron | 50.0% | |
| GGGGAACCATGGTCATCTAA+TGG | - | chr7_2:45677183-45677202 | Msa1059420:intron | 50.0% | |
| CTGGAAGCAAGCACCTTTCT+TGG | - | chr7_2:45677218-45677237 | Msa1059420:intron | 50.0% | |
| !! | CTCTTATGCGTTCGGTTCGG+GGG | - | chr7_2:45674147-45674166 | Msa1059420:intron | 55.0% |
| TAAACTTATTGGGGGGGGGG+GGG | + | chr7_2:45674869-45674888 | None:intergenic | 55.0% | |
| GACAACACCATGGAAGGAGG+TGG | - | chr7_2:45675435-45675454 | Msa1059420:intron | 55.0% | |
| AAGAAGGCCACCTCCTTCCA+TGG | + | chr7_2:45675445-45675464 | None:intergenic | 55.0% | |
| ACCAATCATGACACGCCACG+TGG | + | chr7_2:45675841-45675860 | None:intergenic | 55.0% | |
| GGGGAGAACCAACGATGAAC+TGG | + | chr7_2:45676859-45676878 | None:intergenic | 55.0% | |
| AAACTTATTGGGGGGGGGGG+GGG | + | chr7_2:45674868-45674887 | None:intergenic | 60.0% | |
| ACGTGGCGGCGTGTCATGAT+TGG | + | chr7_2:45675328-45675347 | None:intergenic | 60.0% | |
| AATCATGACACGCCGCCACG+TGG | - | chr7_2:45675327-45675346 | Msa1059420:intron | 60.0% | |
| GCCACGTGGCGTGTCATGAT+TGG | - | chr7_2:45675837-45675856 | Msa1059420:intron | 60.0% | |
| AACTTATTGGGGGGGGGGGG+GGG | + | chr7_2:45674867-45674886 | None:intergenic | 65.0% | |
| ACTTATTGGGGGGGGGGGGG+GGG | + | chr7_2:45674866-45674885 | None:intergenic | 70.0% | |
| TTATTGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674864-45674883 | None:intergenic | 75.0% | |
| CTTATTGGGGGGGGGGGGGG+GGG | + | chr7_2:45674865-45674884 | None:intergenic | 75.0% | |
| ! | TATTGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674863-45674882 | None:intergenic | 80.0% |
| ! | ATTGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674862-45674881 | None:intergenic | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674861-45674880 | None:intergenic | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45674860-45674879 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 45673239 | 45677452 | 45673239 | ID=Msa1059420;Name=Msa1059420 |
| chr7_2 | mRNA | 45673239 | 45677452 | 45673239 | ID=Msa1059420-mRNA-1;Parent=Msa1059420;Name=Msa1059420-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|1|1|5|0|289 |
| chr7_2 | exon | 45677427 | 45677452 | 45677427 | ID=Msa1059420-mRNA-1:exon:8268;Parent=Msa1059420-mRNA-1 |
| chr7_2 | exon | 45676937 | 45677100 | 45676937 | ID=Msa1059420-mRNA-1:exon:8267;Parent=Msa1059420-mRNA-1 |
| chr7_2 | exon | 45675550 | 45675650 | 45675550 | ID=Msa1059420-mRNA-1:exon:8266;Parent=Msa1059420-mRNA-1 |
| chr7_2 | exon | 45674221 | 45674426 | 45674221 | ID=Msa1059420-mRNA-1:exon:8265;Parent=Msa1059420-mRNA-1 |
| chr7_2 | exon | 45673239 | 45673611 | 45673239 | ID=Msa1059420-mRNA-1:exon:8264;Parent=Msa1059420-mRNA-1 |
| chr7_2 | CDS | 45677427 | 45677452 | 45677427 | ID=Msa1059420-mRNA-1:cds;Parent=Msa1059420-mRNA-1 |
| chr7_2 | CDS | 45676937 | 45677100 | 45676937 | ID=Msa1059420-mRNA-1:cds;Parent=Msa1059420-mRNA-1 |
| chr7_2 | CDS | 45675550 | 45675650 | 45675550 | ID=Msa1059420-mRNA-1:cds;Parent=Msa1059420-mRNA-1 |
| chr7_2 | CDS | 45674221 | 45674426 | 45674221 | ID=Msa1059420-mRNA-1:cds;Parent=Msa1059420-mRNA-1 |
| chr7_2 | CDS | 45673239 | 45673611 | 45673239 | ID=Msa1059420-mRNA-1:cds;Parent=Msa1059420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
