Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104390 | XP_024626104.1 | 93.080 | 289 | 18 | 2 | 1 | 288 | 1 | 288 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104390 | sp|Q9SV60|XTH2_ARATH | 53.791 | 277 | 111 | 7 | 9 | 278 | 12 | 278 | 1.22e-97 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104390 | A0A072U9U3 | 89.273 | 289 | 25 | 3 | 1 | 288 | 1 | 284 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa1104390 | 0.812152 | 4.895636e-51 | -8.615850e-47 |
| Msa0047470 | Msa1104390 | 0.810075 | 1.380115e-50 | -8.615850e-47 |
| Msa0060600 | Msa1104390 | 0.800022 | 1.751107e-48 | -8.615850e-47 |
| Msa0105340 | Msa1104390 | 0.806074 | 9.813148e-50 | -8.615850e-47 |
| Msa0618520 | Msa1104390 | 0.807531 | 4.830886e-50 | -8.615850e-47 |
| Msa0620640 | Msa1104390 | 0.804131 | 2.502232e-49 | -8.615850e-47 |
| Msa0656270 | Msa1104390 | 0.808778 | 2.620781e-50 | -8.615850e-47 |
| Msa0700070 | Msa1104390 | 0.816619 | 5.037475e-52 | -8.615850e-47 |
| Msa0743640 | Msa1104390 | 0.801612 | 8.293785e-49 | -8.615850e-47 |
| Msa0763880 | Msa1104390 | 0.802558 | 5.299326e-49 | -8.615850e-47 |
| Msa0203180 | Msa1104390 | 0.802356 | 5.833054e-49 | -8.615850e-47 |
| Msa0411000 | Msa1104390 | 0.829442 | 5.135824e-55 | -8.615850e-47 |
| Msa0455230 | Msa1104390 | 0.824540 | 7.638997e-54 | -8.615850e-47 |
| Msa1019660 | Msa1104390 | 0.979742 | 1.219768e-148 | -8.615850e-47 |
| Msa1059420 | Msa1104390 | 0.861412 | 1.044481e-63 | -8.615850e-47 |
| Msa1073500 | Msa1104390 | 0.803236 | 3.839304e-49 | -8.615850e-47 |
| Msa1104390 | Msa1118140 | 0.800296 | 1.540380e-48 | -8.615850e-47 |
| Msa1104390 | Msa1292730 | 0.801011 | 1.101202e-48 | -8.615850e-47 |
| Msa1104390 | Msa1361190 | 0.814105 | 1.825340e-51 | -8.615850e-47 |
| Msa1104390 | Msa1405400 | 0.804772 | 1.839908e-49 | -8.615850e-47 |
| Msa1104390 | Msa1428440 | 0.804034 | 2.621954e-49 | -8.615850e-47 |
| Msa1104390 | Msa1440180 | 0.811304 | 7.485540e-51 | -8.615850e-47 |
| Msa1104390 | Msa1449740 | 0.814634 | 1.393918e-51 | -8.615850e-47 |
| Msa0243470 | Msa1104390 | 0.818376 | 2.024723e-52 | -8.615850e-47 |
| Msa0281940 | Msa1104390 | 0.813359 | 2.663894e-51 | -8.615850e-47 |
| Msa0284870 | Msa1104390 | 0.809485 | 1.848453e-50 | -8.615850e-47 |
| Msa0323630 | Msa1104390 | 0.805214 | 1.487401e-49 | -8.615850e-47 |
| Msa0363460 | Msa1104390 | 0.822731 | 2.024445e-53 | -8.615850e-47 |
| Msa0568610 | Msa1104390 | 0.811799 | 5.843543e-51 | -8.615850e-47 |
| Msa0863760 | Msa1104390 | 0.804704 | 1.900679e-49 | -8.615850e-47 |
| Msa0887070 | Msa1104390 | 0.817365 | 3.424157e-52 | -8.615850e-47 |
| Msa0903730 | Msa1104390 | 0.808008 | 3.824711e-50 | -8.615850e-47 |
| Msa0934830 | Msa1104390 | 0.810291 | 1.240104e-50 | -8.615850e-47 |
| Msa0964680 | Msa1104390 | 0.801519 | 8.666885e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104390 | MtrunA17_Chr7g0235541 | 95.238 | 210 | 10 | 0 | 79 | 288 | 1 | 210 | 3.78e-154 | 429 |
| Msa1104390 | MtrunA17_Chr8g0340001 | 57.534 | 219 | 85 | 3 | 63 | 278 | 8 | 221 | 1.79e-90 | 268 |
| Msa1104390 | MtrunA17_Chr2g0303721 | 44.718 | 284 | 140 | 5 | 5 | 286 | 3 | 271 | 8.36e-87 | 260 |
| Msa1104390 | MtrunA17_Chr2g0303861 | 46.503 | 286 | 139 | 6 | 5 | 286 | 3 | 278 | 1.44e-84 | 255 |
| Msa1104390 | MtrunA17_Chr7g0252631 | 45.329 | 289 | 135 | 6 | 16 | 286 | 5 | 288 | 4.30e-82 | 249 |
| Msa1104390 | MtrunA17_Chr7g0252621 | 44.718 | 284 | 144 | 6 | 11 | 286 | 10 | 288 | 2.08e-81 | 247 |
| Msa1104390 | MtrunA17_Chr7g0252601 | 44.406 | 286 | 147 | 5 | 8 | 286 | 8 | 288 | 2.42e-81 | 247 |
| Msa1104390 | MtrunA17_Chr4g0054451 | 44.128 | 281 | 146 | 6 | 5 | 280 | 7 | 281 | 1.37e-78 | 240 |
| Msa1104390 | MtrunA17_Chr4g0054431 | 44.203 | 276 | 140 | 7 | 10 | 280 | 13 | 279 | 2.49e-78 | 239 |
| Msa1104390 | MtrunA17_Chr6g0461731 | 44.528 | 265 | 135 | 5 | 28 | 285 | 51 | 310 | 1.35e-76 | 236 |
| Msa1104390 | MtrunA17_Chr6g0461761 | 44.151 | 265 | 136 | 5 | 28 | 285 | 28 | 287 | 8.34e-75 | 230 |
| Msa1104390 | MtrunA17_Chr1g0206081 | 41.115 | 287 | 158 | 7 | 10 | 287 | 12 | 296 | 8.68e-72 | 223 |
| Msa1104390 | MtrunA17_Chr1g0206681 | 43.448 | 290 | 146 | 8 | 10 | 287 | 10 | 293 | 5.93e-70 | 218 |
| Msa1104390 | MtrunA17_Chr4g0072611 | 42.857 | 287 | 140 | 9 | 12 | 287 | 9 | 282 | 1.32e-68 | 214 |
| Msa1104390 | MtrunA17_Chr7g0258911 | 41.696 | 283 | 145 | 7 | 16 | 287 | 8 | 281 | 2.64e-67 | 211 |
| Msa1104390 | MtrunA17_Chr2g0323161 | 41.367 | 278 | 139 | 8 | 16 | 281 | 14 | 279 | 4.84e-67 | 210 |
| Msa1104390 | MtrunA17_Chr4g0023961 | 41.259 | 286 | 130 | 8 | 11 | 277 | 11 | 277 | 8.33e-67 | 210 |
| Msa1104390 | MtrunA17_Chr6g0486581 | 39.024 | 287 | 155 | 8 | 12 | 285 | 4 | 283 | 4.48e-66 | 208 |
| Msa1104390 | MtrunA17_Chr4g0072671 | 44.444 | 270 | 134 | 6 | 27 | 285 | 21 | 285 | 2.08e-65 | 206 |
| Msa1104390 | MtrunA17_Chr2g0299061 | 42.066 | 271 | 141 | 7 | 15 | 277 | 12 | 274 | 1.40e-64 | 204 |
| Msa1104390 | MtrunA17_Chr4g0071341 | 41.935 | 279 | 139 | 8 | 21 | 287 | 16 | 283 | 1.98e-64 | 204 |
| Msa1104390 | MtrunA17_Chr8g0377841 | 40.892 | 269 | 142 | 7 | 15 | 277 | 12 | 269 | 1.13e-62 | 199 |
| Msa1104390 | MtrunA17_Chr3g0122021 | 39.852 | 271 | 144 | 7 | 11 | 277 | 10 | 265 | 1.58e-61 | 196 |
| Msa1104390 | MtrunA17_Chr3g0122031 | 39.852 | 271 | 144 | 7 | 11 | 277 | 10 | 265 | 1.58e-61 | 196 |
| Msa1104390 | MtrunA17_Chr4g0072601 | 41.135 | 282 | 150 | 7 | 17 | 288 | 11 | 286 | 1.07e-60 | 194 |
| Msa1104390 | MtrunA17_Chr3g0096651 | 41.434 | 251 | 134 | 5 | 31 | 277 | 29 | 270 | 1.11e-60 | 194 |
| Msa1104390 | MtrunA17_Chr5g0443391 | 39.510 | 286 | 148 | 7 | 12 | 286 | 8 | 279 | 2.70e-60 | 193 |
| Msa1104390 | MtrunA17_Chr8g0375981 | 37.671 | 292 | 159 | 10 | 10 | 287 | 10 | 292 | 1.03e-56 | 185 |
| Msa1104390 | MtrunA17_Chr8g0389641 | 44.019 | 209 | 107 | 4 | 1 | 207 | 1 | 201 | 6.91e-55 | 178 |
| Msa1104390 | MtrunA17_Chr1g0161951 | 35.932 | 295 | 172 | 8 | 6 | 287 | 3 | 293 | 5.74e-54 | 178 |
| Msa1104390 | MtrunA17_Chr4g0028221 | 36.538 | 312 | 157 | 13 | 5 | 285 | 3 | 304 | 1.46e-52 | 174 |
| Msa1104390 | MtrunA17_Chr2g0327411 | 38.095 | 273 | 149 | 11 | 24 | 285 | 46 | 309 | 1.98e-51 | 171 |
| Msa1104390 | MtrunA17_Chr1g0180451 | 36.721 | 305 | 153 | 12 | 9 | 285 | 2 | 294 | 8.58e-51 | 169 |
| Msa1104390 | MtrunA17_Chr8g0365231 | 36.331 | 278 | 146 | 8 | 30 | 286 | 44 | 311 | 9.26e-51 | 169 |
| Msa1104390 | MtrunA17_Chr7g0264731 | 37.956 | 274 | 149 | 10 | 24 | 286 | 29 | 292 | 1.28e-50 | 168 |
| Msa1104390 | MtrunA17_Chr8g0382041 | 36.508 | 252 | 152 | 5 | 30 | 275 | 32 | 281 | 2.99e-50 | 169 |
| Msa1104390 | MtrunA17_Chr5g0410621 | 35.019 | 257 | 156 | 5 | 30 | 277 | 40 | 294 | 1.45e-49 | 167 |
| Msa1104390 | MtrunA17_Chr8g0390201 | 41.000 | 200 | 107 | 5 | 97 | 285 | 10 | 209 | 1.51e-48 | 160 |
| Msa1104390 | MtrunA17_Chr4g0072681 | 40.611 | 229 | 119 | 7 | 69 | 285 | 20 | 243 | 4.62e-48 | 160 |
| Msa1104390 | MtrunA17_Chr8g0350711 | 34.694 | 147 | 89 | 3 | 54 | 200 | 54 | 193 | 2.92e-16 | 76.3 |
| Msa1104390 | MtrunA17_Chr8g0374231 | 33.010 | 103 | 63 | 4 | 191 | 287 | 1 | 103 | 4.74e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104390 | AT4G13090.1 | 53.791 | 277 | 111 | 7 | 9 | 278 | 12 | 278 | 1.24e-98 | 291 |
| Msa1104390 | AT4G13080.1 | 53.232 | 263 | 112 | 4 | 29 | 286 | 36 | 292 | 1.35e-96 | 286 |
| Msa1104390 | AT3G25050.1 | 50.719 | 278 | 116 | 8 | 20 | 285 | 21 | 289 | 1.48e-91 | 273 |
| Msa1104390 | AT2G06850.1 | 45.775 | 284 | 141 | 6 | 10 | 286 | 14 | 291 | 3.76e-81 | 247 |
| Msa1104390 | AT5G13870.2 | 42.908 | 282 | 152 | 4 | 1 | 278 | 1 | 277 | 1.18e-80 | 246 |
| Msa1104390 | AT5G13870.1 | 42.908 | 282 | 152 | 4 | 1 | 278 | 1 | 277 | 1.18e-80 | 246 |
| Msa1104390 | AT5G13870.3 | 42.908 | 282 | 152 | 4 | 1 | 278 | 1 | 277 | 1.18e-80 | 246 |
| Msa1104390 | AT5G65730.1 | 42.807 | 285 | 148 | 8 | 11 | 286 | 13 | 291 | 2.15e-75 | 232 |
| Msa1104390 | AT1G11545.1 | 43.253 | 289 | 148 | 9 | 10 | 287 | 18 | 301 | 1.21e-74 | 231 |
| Msa1104390 | AT4G37800.1 | 44.118 | 272 | 139 | 7 | 15 | 281 | 19 | 282 | 2.21e-74 | 229 |
| Msa1104390 | AT2G06850.2 | 47.414 | 232 | 110 | 5 | 62 | 286 | 5 | 231 | 4.08e-70 | 217 |
| Msa1104390 | AT2G14620.1 | 41.860 | 301 | 156 | 8 | 1 | 287 | 1 | 296 | 8.25e-69 | 216 |
| Msa1104390 | AT3G23730.1 | 42.593 | 270 | 143 | 6 | 15 | 277 | 10 | 274 | 1.07e-67 | 213 |
| Msa1104390 | AT3G48580.1 | 43.462 | 260 | 125 | 7 | 30 | 285 | 32 | 273 | 1.27e-67 | 212 |
| Msa1104390 | AT4G25810.1 | 43.706 | 286 | 138 | 10 | 12 | 285 | 9 | 283 | 1.35e-67 | 212 |
| Msa1104390 | AT4G28850.1 | 39.057 | 297 | 159 | 11 | 1 | 285 | 1 | 287 | 1.02e-66 | 210 |
| Msa1104390 | AT5G57560.1 | 41.404 | 285 | 147 | 8 | 12 | 285 | 6 | 281 | 2.21e-66 | 209 |
| Msa1104390 | AT4G03210.1 | 40.210 | 286 | 155 | 8 | 10 | 286 | 7 | 285 | 1.24e-65 | 207 |
| Msa1104390 | AT5G57550.1 | 38.699 | 292 | 160 | 8 | 5 | 286 | 1 | 283 | 4.02e-65 | 206 |
| Msa1104390 | AT4G14130.1 | 40.860 | 279 | 152 | 6 | 5 | 277 | 1 | 272 | 3.41e-64 | 203 |
| Msa1104390 | AT5G57540.1 | 42.164 | 268 | 137 | 7 | 31 | 288 | 25 | 284 | 1.97e-63 | 201 |
| Msa1104390 | AT4G30270.1 | 39.362 | 282 | 143 | 7 | 12 | 285 | 4 | 265 | 6.62e-62 | 197 |
| Msa1104390 | AT4G25820.1 | 40.714 | 280 | 147 | 8 | 17 | 287 | 18 | 287 | 9.57e-62 | 197 |
| Msa1104390 | AT5G57530.1 | 40.977 | 266 | 143 | 6 | 31 | 288 | 26 | 285 | 1.69e-61 | 196 |
| Msa1104390 | AT3G48580.3 | 44.105 | 229 | 107 | 6 | 61 | 285 | 3 | 214 | 2.43e-61 | 194 |
| Msa1104390 | AT2G14620.2 | 45.763 | 236 | 114 | 6 | 61 | 287 | 16 | 246 | 7.26e-61 | 194 |
| Msa1104390 | AT2G01850.1 | 36.934 | 287 | 170 | 6 | 10 | 287 | 8 | 292 | 7.27e-61 | 196 |
| Msa1104390 | AT1G14720.1 | 38.321 | 274 | 161 | 5 | 10 | 277 | 8 | 279 | 1.15e-60 | 196 |
| Msa1104390 | AT5G48070.1 | 39.273 | 275 | 148 | 8 | 9 | 278 | 10 | 270 | 5.75e-59 | 190 |
| Msa1104390 | AT2G14620.3 | 45.815 | 227 | 109 | 6 | 70 | 287 | 14 | 235 | 9.07e-59 | 188 |
| Msa1104390 | AT4G03210.2 | 43.534 | 232 | 117 | 7 | 64 | 286 | 31 | 257 | 1.35e-56 | 183 |
| Msa1104390 | AT4G30290.1 | 40.860 | 279 | 146 | 8 | 5 | 278 | 1 | 265 | 1.09e-55 | 181 |
| Msa1104390 | AT2G18800.1 | 36.213 | 301 | 159 | 9 | 11 | 288 | 9 | 299 | 2.03e-55 | 181 |
| Msa1104390 | AT4G30280.1 | 40.000 | 275 | 146 | 8 | 9 | 278 | 10 | 270 | 3.97e-55 | 180 |
| Msa1104390 | AT1G65310.1 | 41.897 | 253 | 132 | 7 | 31 | 278 | 28 | 270 | 2.50e-54 | 178 |
| Msa1104390 | AT1G65310.2 | 41.897 | 253 | 132 | 7 | 31 | 278 | 50 | 292 | 3.15e-54 | 178 |
| Msa1104390 | AT3G48580.2 | 38.846 | 260 | 117 | 8 | 30 | 285 | 32 | 253 | 5.56e-52 | 171 |
| Msa1104390 | AT1G32170.1 | 33.333 | 276 | 169 | 6 | 15 | 277 | 9 | 282 | 3.20e-51 | 172 |
| Msa1104390 | AT3G44990.1 | 37.248 | 298 | 147 | 11 | 15 | 285 | 6 | 290 | 4.17e-50 | 167 |
| Msa1104390 | AT1G10550.1 | 38.189 | 254 | 138 | 7 | 50 | 286 | 59 | 310 | 4.45e-50 | 168 |
| Msa1104390 | AT2G36870.1 | 37.545 | 277 | 144 | 12 | 24 | 285 | 35 | 297 | 6.96e-48 | 162 |
| Msa1104390 | AT4G18990.1 | 32.210 | 267 | 159 | 6 | 30 | 277 | 38 | 301 | 2.76e-45 | 157 |
| Msa1104390 | AT4G18990.2 | 31.250 | 224 | 132 | 5 | 76 | 277 | 4 | 227 | 2.34e-35 | 129 |
| Msa1104390 | AT2G36870.2 | 41.892 | 148 | 76 | 5 | 24 | 165 | 35 | 178 | 6.87e-29 | 108 |
Find 76 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTACCATTCCACCATAAA+TGG | 0.135662 | 7_3:+41674327 | None:intergenic |
| CTCTCATTTGATAAGATTTC+AGG | 0.163732 | 7_3:-41677642 | Msa1104390:intron |
| ACTGCTATTCTCCCCATTTA+TGG | 0.204526 | 7_3:-41674340 | Msa1104390:CDS |
| TCAAAATTGGAATATTCTTC+TGG | 0.215116 | 7_3:-41675694 | Msa1104390:CDS |
| AAGGGTGCACTTACACTATT+TGG | 0.260280 | 7_3:+41675165 | None:intergenic |
| ACGTTTGTTTGCAACGTATA+TGG | 0.261238 | 7_3:+41675284 | None:intergenic |
| GGTGGAATGGTAAGAAATAT+TGG | 0.264713 | 7_3:-41674319 | Msa1104390:CDS |
| CTGGAAGCAAGCACCTTTCC+TGG | 0.285181 | 7_3:-41674420 | Msa1104390:CDS |
| AGCTGGGTTCAGATCAAAAT+TGG | 0.286380 | 7_3:-41675707 | Msa1104390:CDS |
| CATATTCTCTTTGTTGTTGT+GGG | 0.287359 | 7_3:+41674288 | None:intergenic |
| TTCCAAATGTTCAACATTCA+TGG | 0.298583 | 7_3:-41674392 | Msa1104390:CDS |
| AATATTCTTCTGGGTTCTTT+CGG | 0.340619 | 7_3:-41675684 | Msa1104390:CDS |
| CCTGTTCTTGAATATCCTAA+TGG | 0.346243 | 7_3:+41674538 | None:intergenic |
| TACATAAAGAATGTCAAATT+AGG | 0.349402 | 7_3:-41674211 | Msa1104390:CDS |
| GGCTGCCAATCAAATAATTC+AGG | 0.353745 | 7_3:-41674371 | Msa1104390:CDS |
| TCATATTCTCTTTGTTGTTG+TGG | 0.366911 | 7_3:+41674287 | None:intergenic |
| TTCATACATATGGAATCCTT+TGG | 0.369402 | 7_3:-41675196 | Msa1104390:CDS |
| TTCAAAGGCATTTGCACACT+TGG | 0.371397 | 7_3:-41675357 | Msa1104390:CDS |
| AACTCCTAGTGAGTCCTTGC+TGG | 0.377504 | 7_3:+41675645 | None:intergenic |
| CTTACCATTCCACCATAAAT+GGG | 0.387944 | 7_3:+41674328 | None:intergenic |
| TTCTCTAATGTGTAGGAGCT+GGG | 0.403426 | 7_3:-41675723 | Msa1104390:intron |
| ATGTGGATGAAACACCCATT+AGG | 0.403715 | 7_3:-41674553 | Msa1104390:CDS |
| CAAAATTGGAATATTCTTCT+GGG | 0.412588 | 7_3:-41675693 | Msa1104390:CDS |
| GTGGAATGGTAAGAAATATT+GGG | 0.416621 | 7_3:-41674318 | Msa1104390:CDS |
| AGCCATGAATGTTGAACATT+TGG | 0.424054 | 7_3:+41674390 | None:intergenic |
| TATGTATGAAAATCGATTGT+TGG | 0.426647 | 7_3:+41675209 | None:intergenic |
| TTACAGTTAGCATATGGAAT+GGG | 0.447705 | 7_3:-41674475 | Msa1104390:CDS |
| CTGTTCTTGAATATCCTAAT+GGG | 0.448806 | 7_3:+41674539 | None:intergenic |
| GGGGAACCATGGGCATCTAA+TGG | 0.459672 | 7_3:-41674455 | Msa1104390:CDS |
| ATAATTGAAGCTTACTTCAA+AGG | 0.463195 | 7_3:-41675372 | Msa1104390:intron |
| AACGTGTTTGCGAGTGATGA+AGG | 0.466779 | 7_3:-41675266 | Msa1104390:CDS |
| TGAACATTTGGAATTGAGCC+AGG | 0.473153 | 7_3:+41674402 | None:intergenic |
| TGCATGTTACAGTTAGCATA+TGG | 0.473706 | 7_3:-41674481 | Msa1104390:CDS |
| CTATTTGGTGTTGGTTCCAA+AGG | 0.483927 | 7_3:+41675180 | None:intergenic |
| AACAGAACTACAAGGTTACA+TGG | 0.489277 | 7_3:-41677710 | Msa1104390:CDS |
| CCATTAGGATATTCAAGAAC+AGG | 0.490637 | 7_3:-41674538 | Msa1104390:CDS |
| GCACTTACACTATTTGGTGT+TGG | 0.490892 | 7_3:+41675171 | None:intergenic |
| ATGTAACCTTGTAGTTCTGT+TGG | 0.516191 | 7_3:+41677712 | None:intergenic |
| AGCTTTGCTAGCACATATCA+AGG | 0.520811 | 7_3:+41677749 | None:intergenic |
| GGACTCACTAGGAGTTGTTA+CGG | 0.523311 | 7_3:-41675638 | Msa1104390:CDS |
| TTGTTTGAGCAGACCAGCCA+TGG | 0.541952 | 7_3:+41678206 | None:intergenic |
| TTCTTACCATTAGATGCCCA+TGG | 0.543129 | 7_3:+41674449 | None:intergenic |
| ATTCAAGAACAGGTCAAACA+TGG | 0.543502 | 7_3:-41674528 | Msa1104390:CDS |
| ACGTGTTTGCGAGTGATGAA+GGG | 0.544415 | 7_3:-41675265 | Msa1104390:CDS |
| TCTCCCCATTTATGGTGGAA+TGG | 0.549057 | 7_3:-41674332 | Msa1104390:CDS |
| TCAAAGGCATTTGCACACTT+GGG | 0.549276 | 7_3:-41675356 | Msa1104390:CDS |
| AGGCATTTGCACACTTGGGA+GGG | 0.551934 | 7_3:-41675352 | Msa1104390:CDS |
| GAGAACAAAGGCATAGCCTC+TGG | 0.558268 | 7_3:-41675238 | Msa1104390:CDS |
| CTAATGGTAAGAAAATTGAC+TGG | 0.563990 | 7_3:-41674439 | Msa1104390:CDS |
| GTTACAGTTAGCATATGGAA+TGG | 0.566053 | 7_3:-41674476 | Msa1104390:CDS |
| GCTATTCTCCCCATTTATGG+TGG | 0.569788 | 7_3:-41674337 | Msa1104390:CDS |
| AAGGCATTTGCACACTTGGG+AGG | 0.573084 | 7_3:-41675353 | Msa1104390:CDS |
| GCATATGGAATGGGGAACCA+TGG | 0.575883 | 7_3:-41674466 | Msa1104390:CDS |
| CATATGGAATGGGGAACCAT+GGG | 0.578085 | 7_3:-41674465 | Msa1104390:CDS |
| CACGTCTTCTTTGTGGACAA+CGG | 0.581793 | 7_3:-41677678 | Msa1104390:CDS |
| ATTTGGAATTGAGCCAGGAA+AGG | 0.585724 | 7_3:+41674407 | None:intergenic |
| GAGAATATGAAGATGTGAGG+AGG | 0.589124 | 7_3:-41674274 | Msa1104390:CDS |
| CGTGTTTGCGAGTGATGAAG+GGG | 0.591135 | 7_3:-41675264 | Msa1104390:CDS |
| GTAACATGCATTTGTTGTGA+AGG | 0.597132 | 7_3:+41674494 | None:intergenic |
| AAGGCTAGTGCAACGAAGAG+AGG | 0.603840 | 7_3:+41677768 | None:intergenic |
| ATACCCAGCAAGGACTCACT+AGG | 0.610289 | 7_3:-41675649 | Msa1104390:CDS |
| AGGCTAGTGCAACGAAGAGA+GGG | 0.612578 | 7_3:+41677769 | None:intergenic |
| ACAGAACTACAAGGTTACAT+GGG | 0.615473 | 7_3:-41677709 | Msa1104390:CDS |
| ATGTGCTAGCAAAGCTGTTG+AGG | 0.616184 | 7_3:-41677742 | Msa1104390:CDS |
| AAAGAGAATATGAAGATGTG+AGG | 0.618781 | 7_3:-41674277 | Msa1104390:CDS |
| TTACCATTCCACCATAAATG+GGG | 0.625075 | 7_3:+41674329 | None:intergenic |
| CTGGTCTGCTCAAACAACAA+AGG | 0.637545 | 7_3:-41678200 | Msa1104390:intron |
| TTCAAGAACAGGTCAAACAT+GGG | 0.644348 | 7_3:-41674527 | Msa1104390:CDS |
| AAGCTTCCAACAGAACTACA+AGG | 0.649713 | 7_3:-41677718 | Msa1104390:CDS |
| TACAGTTAGCATATGGAATG+GGG | 0.653679 | 7_3:-41674474 | Msa1104390:CDS |
| GAGAATTAAGATACCCAGCA+AGG | 0.659349 | 7_3:-41675659 | Msa1104390:CDS |
| TATGACTACTGTTCTGACAG+AGG | 0.664302 | 7_3:-41674239 | Msa1104390:CDS |
| CAGAACTACAAGGTTACATG+GGG | 0.687388 | 7_3:-41677708 | Msa1104390:CDS |
| CGATTGTTGGATCAAACCAG+AGG | 0.695303 | 7_3:+41675222 | None:intergenic |
| TGTTTGCGAGTGATGAAGGG+GGG | 0.695892 | 7_3:-41675262 | Msa1104390:CDS |
| GTGTTTGCGAGTGATGAAGG+GGG | 0.706203 | 7_3:-41675263 | Msa1104390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATCCAAAAAAAA+TGG | + | chr7_3:41674905-41674924 | None:intergenic | 10.0% |
| !! | TACAAAATCAATAAAGTTTA+GGG | - | chr7_3:41675281-41675300 | Msa1104390:CDS | 15.0% |
| !!! | ATGGTTTTTAACTAATAAAA+AGG | - | chr7_3:41675841-41675860 | Msa1104390:intron | 15.0% |
| !!! | ATTGCAAGTTATTTTATTTT+AGG | + | chr7_3:41676472-41676491 | None:intergenic | 15.0% |
| !! | TGAGAAATTAAACTATAATA+TGG | + | chr7_3:41676656-41676675 | None:intergenic | 15.0% |
| !! | ATTAAAAATGAAGTATATAC+TGG | + | chr7_3:41677730-41677749 | None:intergenic | 15.0% |
| !!! | ACATTTTATTTTGATAAAGT+TGG | + | chr7_3:41677777-41677796 | None:intergenic | 15.0% |
| !! | ATCAAAATAAATTATTGATG+TGG | - | chr7_3:41677807-41677826 | Msa1104390:intron | 15.0% |
| !!! | GAAACATTATTAAAATTTTC+AGG | - | chr7_3:41677832-41677851 | Msa1104390:intron | 15.0% |
| !! | AATTTATGTTTACTTCCTTT+AGG | - | chr7_3:41674868-41674887 | Msa1104390:intron | 20.0% |
| !!! | TTATGTTTGACCATTTTTTT+TGG | - | chr7_3:41674892-41674911 | Msa1104390:intron | 20.0% |
| !! | ATGAAATAATTTAGATAGAC+AGG | - | chr7_3:41675023-41675042 | Msa1104390:intron | 20.0% |
| !!! | TCTTTGGGATAAAATATATA+TGG | + | chr7_3:41675243-41675262 | None:intergenic | 20.0% |
| !! | ATGAAAAGCTAATATTCTTT+GGG | + | chr7_3:41675258-41675277 | None:intergenic | 20.0% |
| !! | TATGAAAAGCTAATATTCTT+TGG | + | chr7_3:41675259-41675278 | None:intergenic | 20.0% |
| !! | GTACAAAATCAATAAAGTTT+AGG | - | chr7_3:41675280-41675299 | Msa1104390:CDS | 20.0% |
| !! | CATGAAAATATCATTAACTT+AGG | - | chr7_3:41675579-41675598 | Msa1104390:intron | 20.0% |
| !! | CTCAAAATATAAGTAAAAGT+AGG | + | chr7_3:41675775-41675794 | None:intergenic | 20.0% |
| !!! | AATGATTAGAAAAGAGTTTT+GGG | - | chr7_3:41676012-41676031 | Msa1104390:intron | 20.0% |
| !!! | TAATAAAAATAAAAGCGTCT+TGG | - | chr7_3:41676067-41676086 | Msa1104390:intron | 20.0% |
| !!! | AATAAAAATAAAAGCGTCTT+GGG | - | chr7_3:41676068-41676087 | Msa1104390:intron | 20.0% |
| !! | TATCGTAATATAAAAGTTTG+TGG | + | chr7_3:41676858-41676877 | None:intergenic | 20.0% |
| !! | AATTGAAAAAAATTTGTCCT+CGG | - | chr7_3:41677704-41677723 | Msa1104390:CDS | 20.0% |
| !!! | AAAGTTGGACAATTTTATTT+TGG | + | chr7_3:41677762-41677781 | None:intergenic | 20.0% |
| !!! | TAAAATTTTCAGGTTTTATG+TGG | - | chr7_3:41677842-41677861 | Msa1104390:intron | 20.0% |
| !!! | ATTTTCCTGAATTATTTGAT+TGG | + | chr7_3:41678049-41678068 | None:intergenic | 20.0% |
| !! | TACATAAAGAATGTCAAATT+AGG | - | chr7_3:41678201-41678220 | Msa1104390:CDS | 20.0% |
| !!! | TATTTTTTGTGTTTTTCGTG+TGG | + | chr7_3:41674361-41674380 | None:intergenic | 25.0% |
| ! | AAATCTAAACATCTTGAACA+AGG | - | chr7_3:41675085-41675104 | Msa1104390:intron | 25.0% |
| ! | AGATAATGTTGCAAAAAGTT+AGG | + | chr7_3:41675114-41675133 | None:intergenic | 25.0% |
| ! | TCAACATGAACAAATGTATT+TGG | - | chr7_3:41675713-41675732 | Msa1104390:intron | 25.0% |
| ! | AATATAAGTAAAAGTAGGTC+AGG | + | chr7_3:41675770-41675789 | None:intergenic | 25.0% |
| !! | GTTTTACTCATCAACTTATA+AGG | + | chr7_3:41675914-41675933 | None:intergenic | 25.0% |
| !! | CAATGATTAGAAAAGAGTTT+TGG | - | chr7_3:41676011-41676030 | Msa1104390:intron | 25.0% |
| !! | GAAACTTGTCTTTAGAAAAA+GGG | + | chr7_3:41676160-41676179 | None:intergenic | 25.0% |
| !! | AGAAACTTGTCTTTAGAAAA+AGG | + | chr7_3:41676161-41676180 | None:intergenic | 25.0% |
| ! | ATCAAAGTTTCTCCATATTA+TGG | - | chr7_3:41676190-41676209 | Msa1104390:intron | 25.0% |
| ! | TCAAAGTTTCTCCATATTAT+GGG | - | chr7_3:41676191-41676210 | Msa1104390:intron | 25.0% |
| ! | TAGGTCAGAAATACTAAAAT+AGG | - | chr7_3:41676217-41676236 | Msa1104390:intron | 25.0% |
| ! | TTGTGCAAAAATATAACAAG+TGG | + | chr7_3:41676291-41676310 | None:intergenic | 25.0% |
| ! | GACTCATACAAAAATATCTT+GGG | + | chr7_3:41676340-41676359 | None:intergenic | 25.0% |
| ! | TGACTCATACAAAAATATCT+TGG | + | chr7_3:41676341-41676360 | None:intergenic | 25.0% |
| !! | TTTTGTATGAGTCATATCTT+TGG | - | chr7_3:41676347-41676366 | Msa1104390:intron | 25.0% |
| ! | ATACAAAAATATCTTGTGCA+AGG | + | chr7_3:41676380-41676399 | None:intergenic | 25.0% |
| ! | AGGAACAAATATTTGAAAGA+TGG | + | chr7_3:41676452-41676471 | None:intergenic | 25.0% |
| ! | TGAAGTAAAATACTTCTAGA+AGG | - | chr7_3:41676492-41676511 | Msa1104390:intron | 25.0% |
| !!! | TTTACTTTTCTCTAATGTGT+AGG | - | chr7_3:41676682-41676701 | Msa1104390:intron | 25.0% |
| ! | TCAAAATTGGAATATTCTTC+TGG | - | chr7_3:41676718-41676737 | Msa1104390:intron | 25.0% |
| ! | CAAAATTGGAATATTCTTCT+GGG | - | chr7_3:41676719-41676738 | Msa1104390:intron | 25.0% |
| ! | CATAGTTAAATATTGATGCT+TGG | + | chr7_3:41676976-41676995 | None:intergenic | 25.0% |
| ! | ATAATTGAAGCTTACTTCAA+AGG | - | chr7_3:41677040-41677059 | Msa1104390:intron | 25.0% |
| !!! | TGAGATTGACTTTGAATTTT+TGG | - | chr7_3:41677091-41677110 | Msa1104390:intron | 25.0% |
| !!! | GAGATTGACTTTGAATTTTT+GGG | - | chr7_3:41677092-41677111 | Msa1104390:intron | 25.0% |
| ! | TATGTATGAAAATCGATTGT+TGG | + | chr7_3:41677206-41677225 | None:intergenic | 25.0% |
| !!! | ACAATCGATTTTCATACATA+TGG | - | chr7_3:41677206-41677225 | Msa1104390:intron | 25.0% |
| ! | ATGAAAGAATTAACGTTTAG+CGG | - | chr7_3:41677481-41677500 | Msa1104390:intron | 25.0% |
| ! | ATTTGAATTGGTTACATGAA+GGG | + | chr7_3:41677652-41677671 | None:intergenic | 25.0% |
| ! | TATTTGAATTGGTTACATGA+AGG | + | chr7_3:41677653-41677672 | None:intergenic | 25.0% |
| ! | TCTCTCTATTAGATTTCAAA+TGG | + | chr7_3:41677680-41677699 | None:intergenic | 25.0% |
| !!! | GACAATTTTATTTTGGACTA+TGG | + | chr7_3:41677755-41677774 | None:intergenic | 25.0% |
| TGCATACATGGAAAATACTT+GGG | + | chr7_3:41674555-41674574 | None:intergenic | 30.0% | |
| ATGCATACATGGAAAATACT+TGG | + | chr7_3:41674556-41674575 | None:intergenic | 30.0% | |
| ! | AATAGAAGTACATGCATACA+TGG | + | chr7_3:41674567-41674586 | None:intergenic | 30.0% |
| AAAAAATCACGTCTTCTTTG+TGG | - | chr7_3:41674727-41674746 | Msa1104390:intron | 30.0% | |
| CTCTCATTTGATAAGATTTC+AGG | - | chr7_3:41674770-41674789 | Msa1104390:intron | 30.0% | |
| ATGGTCAAACATAAACCTAA+AGG | + | chr7_3:41674886-41674905 | None:intergenic | 30.0% | |
| AACAAAAATTGTGATTCGCA+CGG | + | chr7_3:41675150-41675169 | None:intergenic | 30.0% | |
| ! | AATTTTTGAACCCAGAACAA+TGG | + | chr7_3:41675216-41675235 | None:intergenic | 30.0% |
| ATGTCGAATTGCATAATCTA+CGG | + | chr7_3:41675326-41675345 | None:intergenic | 30.0% | |
| ! | AATCTAGTTCATTGCACTTA+TGG | + | chr7_3:41675416-41675435 | None:intergenic | 30.0% |
| ! | GAGAAAGTGTATATATGTAG+AGG | + | chr7_3:41675674-41675693 | None:intergenic | 30.0% |
| AAAGAGACGTGTTTAATCAA+AGG | - | chr7_3:41675813-41675832 | Msa1104390:intron | 30.0% | |
| TGTTTAATCAAAGGAGATCA+TGG | - | chr7_3:41675822-41675841 | Msa1104390:intron | 30.0% | |
| TACTCATCAACTTATAAGGT+GGG | + | chr7_3:41675910-41675929 | None:intergenic | 30.0% | |
| TTACTCATCAACTTATAAGG+TGG | + | chr7_3:41675911-41675930 | None:intergenic | 30.0% | |
| CGATACTCTTATTACTACTT+CGG | + | chr7_3:41675955-41675974 | None:intergenic | 30.0% | |
| !!! | GAGTTTTGGGTTATAAAGAT+TGG | - | chr7_3:41676025-41676044 | Msa1104390:intron | 30.0% |
| !! | CAATATGAAGTTCTGGTTTA+GGG | + | chr7_3:41676135-41676154 | None:intergenic | 30.0% |
| AAAGAAGCAAAAGCAGTAAA+AGG | - | chr7_3:41676250-41676269 | Msa1104390:intron | 30.0% | |
| AAGAAGCAAAAGCAGTAAAA+GGG | - | chr7_3:41676251-41676270 | Msa1104390:intron | 30.0% | |
| AAAGCAGTAAAAGGGTAATA+TGG | - | chr7_3:41676259-41676278 | Msa1104390:intron | 30.0% | |
| AAGCAGTAAAAGGGTAATAT+GGG | - | chr7_3:41676260-41676279 | Msa1104390:intron | 30.0% | |
| ATATTTGAAAGATGGAGTCT+TGG | + | chr7_3:41676444-41676463 | None:intergenic | 30.0% | |
| GACTCATCATAAGTTTATCA+TGG | - | chr7_3:41676590-41676609 | Msa1104390:intron | 30.0% | |
| AATATTCTTCTGGGTTCTTT+CGG | - | chr7_3:41676728-41676747 | Msa1104390:intron | 30.0% | |
| TTAAATTGCAGTTGTGATTG+TGG | - | chr7_3:41676827-41676846 | Msa1104390:intron | 30.0% | |
| TTGCAATTTGCAAATGCAAT+TGG | - | chr7_3:41676948-41676967 | Msa1104390:intron | 30.0% | |
| !! | TTTGAATTTTTGGGCAACAA+AGG | - | chr7_3:41677101-41677120 | Msa1104390:intron | 30.0% |
| TTCATACATATGGAATCCTT+TGG | - | chr7_3:41677216-41677235 | Msa1104390:intron | 30.0% | |
| GAAAATATGGAACTTGAATC+TGG | + | chr7_3:41677347-41677366 | None:intergenic | 30.0% | |
| ! | TTGGCTTTCACAATCAAAAT+CGG | - | chr7_3:41677393-41677412 | Msa1104390:intron | 30.0% |
| TGAAAACAATCTAGTTGAGT+GGG | + | chr7_3:41677555-41677574 | None:intergenic | 30.0% | |
| ATGAAAACAATCTAGTTGAG+TGG | + | chr7_3:41677556-41677575 | None:intergenic | 30.0% | |
| CAAATGGTAGCTATTTGAAT+TGG | + | chr7_3:41677664-41677683 | None:intergenic | 30.0% | |
| CTGTTCTTGAATATCCTAAT+GGG | + | chr7_3:41677876-41677895 | None:intergenic | 30.0% | |
| TTACAGTTAGCATATGGAAT+GGG | - | chr7_3:41677937-41677956 | Msa1104390:intron | 30.0% | |
| CTAATGGTAAGAAAATTGAC+TGG | - | chr7_3:41677973-41677992 | Msa1104390:intron | 30.0% | |
| TTCCAAATGTTCAACATTCA+TGG | - | chr7_3:41678020-41678039 | Msa1104390:intron | 30.0% | |
| GTGGAATGGTAAGAAATATT+GGG | - | chr7_3:41678094-41678113 | Msa1104390:intron | 30.0% | |
| !! | CATATTCTCTTTGTTGTTGT+GGG | + | chr7_3:41678127-41678146 | None:intergenic | 30.0% |
| !! | TCATATTCTCTTTGTTGTTG+TGG | + | chr7_3:41678128-41678147 | None:intergenic | 30.0% |
| AAAGAGAATATGAAGATGTG+AGG | - | chr7_3:41678135-41678154 | Msa1104390:intron | 30.0% | |
| TCTTAGTCAAGATATCTCGA+CGG | - | chr7_3:41674256-41674275 | Msa1104390:CDS | 35.0% | |
| CACTAATCACTTGGATTCTA+TGG | + | chr7_3:41674477-41674496 | None:intergenic | 35.0% | |
| TCATGCATACACTAATCACT+TGG | + | chr7_3:41674486-41674505 | None:intergenic | 35.0% | |
| TATGCATGAGTACATTTGTG+TGG | - | chr7_3:41674497-41674516 | Msa1104390:CDS | 35.0% | |
| ! | ATGTAACCTTGTAGTTCTGT+TGG | + | chr7_3:41674703-41674722 | None:intergenic | 35.0% |
| AACAGAACTACAAGGTTACA+TGG | - | chr7_3:41674702-41674721 | Msa1104390:intron | 35.0% | |
| ACAGAACTACAAGGTTACAT+GGG | - | chr7_3:41674703-41674722 | Msa1104390:intron | 35.0% | |
| AGCAAATGGTGCATACATAT+TGG | + | chr7_3:41674954-41674973 | None:intergenic | 35.0% | |
| AGAACGCGTTAAAAAGCAAA+TGG | + | chr7_3:41674968-41674987 | None:intergenic | 35.0% | |
| AGATGAATTGTCCATTGTTC+TGG | - | chr7_3:41675202-41675221 | Msa1104390:CDS | 35.0% | |
| GATGAATTGTCCATTGTTCT+GGG | - | chr7_3:41675203-41675222 | Msa1104390:CDS | 35.0% | |
| ATGCAATTCGACATGTATCT+TGG | - | chr7_3:41675332-41675351 | Msa1104390:CDS | 35.0% | |
| TTGAATTCATAACTCCCTGT+CGG | + | chr7_3:41675980-41675999 | None:intergenic | 35.0% | |
| !! | TAAAAGCGTCTTGGGATTAT+TGG | - | chr7_3:41676076-41676095 | Msa1104390:intron | 35.0% |
| !! | CCAATATGAAGTTCTGGTTT+AGG | + | chr7_3:41676136-41676155 | None:intergenic | 35.0% |
| CCTAAACCAGAACTTCATAT+TGG | - | chr7_3:41676133-41676152 | Msa1104390:intron | 35.0% | |
| AGCAGTAAAAGGGTAATATG+GGG | - | chr7_3:41676261-41676280 | Msa1104390:intron | 35.0% | |
| !! | AATTTTTGGGCAACAAAGGA+AGG | - | chr7_3:41677105-41677124 | Msa1104390:intron | 35.0% |
| ACGTTTGTTTGCAACGTATA+TGG | + | chr7_3:41677131-41677150 | None:intergenic | 35.0% | |
| AATCTTGACCGTAAGAGAAA+GGG | + | chr7_3:41677268-41677287 | None:intergenic | 35.0% | |
| ! | CATCCATGCATTTAAGACAT+CGG | - | chr7_3:41677295-41677314 | Msa1104390:intron | 35.0% |
| TGGCTTTCACAATCAAAATC+GGG | - | chr7_3:41677394-41677413 | Msa1104390:intron | 35.0% | |
| ATCTCGAATGTGTAAGCAAA+AGG | - | chr7_3:41677428-41677447 | Msa1104390:intron | 35.0% | |
| TCTCGAATGTGTAAGCAAAA+GGG | - | chr7_3:41677429-41677448 | Msa1104390:intron | 35.0% | |
| AAAGGGAATTCAATTTCCTC+CGG | - | chr7_3:41677446-41677465 | Msa1104390:intron | 35.0% | |
| ! | CTTTCATTTTGAATGCTCAC+CGG | + | chr7_3:41677468-41677487 | None:intergenic | 35.0% |
| GAAAACAATCTAGTTGAGTG+GGG | + | chr7_3:41677554-41677573 | None:intergenic | 35.0% | |
| ACTTTGTGTCCTTAAACATG+TGG | + | chr7_3:41677607-41677626 | None:intergenic | 35.0% | |
| CCTGTTCTTGAATATCCTAA+TGG | + | chr7_3:41677877-41677896 | None:intergenic | 35.0% | |
| CCATTAGGATATTCAAGAAC+AGG | - | chr7_3:41677874-41677893 | Msa1104390:intron | 35.0% | |
| ATTCAAGAACAGGTCAAACA+TGG | - | chr7_3:41677884-41677903 | Msa1104390:intron | 35.0% | |
| TTCAAGAACAGGTCAAACAT+GGG | - | chr7_3:41677885-41677904 | Msa1104390:intron | 35.0% | |
| !! | GTAACATGCATTTGTTGTGA+AGG | + | chr7_3:41677921-41677940 | None:intergenic | 35.0% |
| TGCATGTTACAGTTAGCATA+TGG | - | chr7_3:41677931-41677950 | Msa1104390:intron | 35.0% | |
| GTTACAGTTAGCATATGGAA+TGG | - | chr7_3:41677936-41677955 | Msa1104390:intron | 35.0% | |
| TACAGTTAGCATATGGAATG+GGG | - | chr7_3:41677938-41677957 | Msa1104390:intron | 35.0% | |
| AGCCATGAATGTTGAACATT+TGG | + | chr7_3:41678025-41678044 | None:intergenic | 35.0% | |
| TTACCATTCCACCATAAATG+GGG | + | chr7_3:41678086-41678105 | None:intergenic | 35.0% | |
| CTTACCATTCCACCATAAAT+GGG | + | chr7_3:41678087-41678106 | None:intergenic | 35.0% | |
| TCTTACCATTCCACCATAAA+TGG | + | chr7_3:41678088-41678107 | None:intergenic | 35.0% | |
| GGTGGAATGGTAAGAAATAT+TGG | - | chr7_3:41678093-41678112 | Msa1104390:intron | 35.0% | |
| TCTGCTCAAACAACAAAGGT+CGG | - | chr7_3:41674216-41674235 | Msa1104390:CDS | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | + | chr7_3:41674523-41674542 | None:intergenic | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | + | chr7_3:41674524-41674543 | None:intergenic | 40.0% | |
| AGCTTTGCTAGCACATATCA+AGG | + | chr7_3:41674666-41674685 | None:intergenic | 40.0% | |
| AAGCTTCCAACAGAACTACA+AGG | - | chr7_3:41674694-41674713 | Msa1104390:intron | 40.0% | |
| CAGAACTACAAGGTTACATG+GGG | - | chr7_3:41674704-41674723 | Msa1104390:intron | 40.0% | |
| !! | ACGTCTCTTTTCTAGTGTTC+TGG | + | chr7_3:41675803-41675822 | None:intergenic | 40.0% |
| TGAGTAAAACTGCAAGTGCA+CGG | - | chr7_3:41675924-41675943 | Msa1104390:intron | 40.0% | |
| !! | AATAAGAGTATCGTTCCGAC+AGG | - | chr7_3:41675962-41675981 | Msa1104390:intron | 40.0% |
| !! | ATAAGAGTATCGTTCCGACA+GGG | - | chr7_3:41675963-41675982 | Msa1104390:intron | 40.0% |
| !! | GTTTAGGGTTTGGTTTGTGA+AGG | + | chr7_3:41676120-41676139 | None:intergenic | 40.0% |
| !! | TGAAGTTCTGGTTTAGGGTT+TGG | + | chr7_3:41676130-41676149 | None:intergenic | 40.0% |
| AAGGGTCCAATATGAAGTTC+TGG | + | chr7_3:41676142-41676161 | None:intergenic | 40.0% | |
| TTCTCCATATTATGGGCTCT+AGG | - | chr7_3:41676198-41676217 | Msa1104390:intron | 40.0% | |
| GGAGCAAAAGAAAGGAGAAT+TGG | + | chr7_3:41676423-41676442 | None:intergenic | 40.0% | |
| ATCATGGCACTACGTGATAT+TGG | - | chr7_3:41676606-41676625 | Msa1104390:intron | 40.0% | |
| TTTCTCTAATGTGTAGGAGC+TGG | - | chr7_3:41676688-41676707 | Msa1104390:intron | 40.0% | |
| TTCTCTAATGTGTAGGAGCT+GGG | - | chr7_3:41676689-41676708 | Msa1104390:intron | 40.0% | |
| AGCTGGGTTCAGATCAAAAT+TGG | - | chr7_3:41676705-41676724 | Msa1104390:intron | 40.0% | |
| GAGAATTAAGATACCCAGCA+AGG | - | chr7_3:41676753-41676772 | Msa1104390:intron | 40.0% | |
| !! | TTCAAAGGCATTTGCACACT+TGG | - | chr7_3:41677055-41677074 | Msa1104390:intron | 40.0% |
| !! | TCAAAGGCATTTGCACACTT+GGG | - | chr7_3:41677056-41677075 | Msa1104390:intron | 40.0% |
| !! | CTATTTGGTGTTGGTTCCAA+AGG | + | chr7_3:41677235-41677254 | None:intergenic | 40.0% |
| !! | GCACTTACACTATTTGGTGT+TGG | + | chr7_3:41677244-41677263 | None:intergenic | 40.0% |
| ! | AAGGGTGCACTTACACTATT+TGG | + | chr7_3:41677250-41677269 | None:intergenic | 40.0% |
| TAAGTGCACCCTTTCTCTTA+CGG | - | chr7_3:41677257-41677276 | Msa1104390:intron | 40.0% | |
| GAATCTTGACCGTAAGAGAA+AGG | + | chr7_3:41677269-41677288 | None:intergenic | 40.0% | |
| CTTTCACAATCAAAATCGGG+AGG | - | chr7_3:41677397-41677416 | Msa1104390:intron | 40.0% | |
| ACCTATGAGACACACAAACT+AGG | - | chr7_3:41677524-41677543 | Msa1104390:intron | 40.0% | |
| ! | ACCTAGTTTGTGTGTCTCAT+AGG | + | chr7_3:41677528-41677547 | None:intergenic | 40.0% |
| CAAAGTCCTTACCACTTGAA+TGG | - | chr7_3:41677621-41677640 | Msa1104390:intron | 40.0% | |
| GAAGAACCATTCAAGTGGTA+AGG | + | chr7_3:41677630-41677649 | None:intergenic | 40.0% | |
| AATGAAGTATATACTGGCCG+AGG | + | chr7_3:41677724-41677743 | None:intergenic | 40.0% | |
| ATGTGGATGAAACACCCATT+AGG | - | chr7_3:41677859-41677878 | Msa1104390:intron | 40.0% | |
| TTCTTACCATTAGATGCCCA+TGG | + | chr7_3:41677966-41677985 | None:intergenic | 40.0% | |
| ! | ATTTGGAATTGAGCCAGGAA+AGG | + | chr7_3:41678008-41678027 | None:intergenic | 40.0% |
| ! | TGAACATTTGGAATTGAGCC+AGG | + | chr7_3:41678013-41678032 | None:intergenic | 40.0% |
| GGCTGCCAATCAAATAATTC+AGG | - | chr7_3:41678041-41678060 | Msa1104390:intron | 40.0% | |
| ACTGCTATTCTCCCCATTTA+TGG | - | chr7_3:41678072-41678091 | Msa1104390:intron | 40.0% | |
| GAGAATATGAAGATGTGAGG+AGG | - | chr7_3:41678138-41678157 | Msa1104390:intron | 40.0% | |
| TATGACTACTGTTCTGACAG+AGG | - | chr7_3:41678173-41678192 | Msa1104390:intron | 40.0% | |
| CTGGTCTGCTCAAACAACAA+AGG | - | chr7_3:41674212-41674231 | Msa1104390:CDS | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | - | chr7_3:41674516-41674535 | Msa1104390:CDS | 45.0% | |
| ATGTGCTAGCAAAGCTGTTG+AGG | - | chr7_3:41674670-41674689 | Msa1104390:intron | 45.0% | |
| CACGTCTTCTTTGTGGACAA+CGG | - | chr7_3:41674734-41674753 | Msa1104390:intron | 45.0% | |
| CTGACCTAGAGCCCATAATA+TGG | + | chr7_3:41676205-41676224 | None:intergenic | 45.0% | |
| GGAGTCTTGGAGCAAAAGAA+AGG | + | chr7_3:41676431-41676450 | None:intergenic | 45.0% | |
| GGACTCACTAGGAGTTGTTA+CGG | - | chr7_3:41676774-41676793 | Msa1104390:intron | 45.0% | |
| TATGCTCGATGCGACTACAA+TGG | - | chr7_3:41676891-41676910 | Msa1104390:intron | 45.0% | |
| AACGTGTTTGCGAGTGATGA+AGG | - | chr7_3:41677146-41677165 | Msa1104390:intron | 45.0% | |
| ACGTGTTTGCGAGTGATGAA+GGG | - | chr7_3:41677147-41677166 | Msa1104390:intron | 45.0% | |
| CGATTGTTGGATCAAACCAG+AGG | + | chr7_3:41677193-41677212 | None:intergenic | 45.0% | |
| CCACCGATGTCTTAAATGCA+TGG | + | chr7_3:41677301-41677320 | None:intergenic | 45.0% | |
| ! | CCATGCATTTAAGACATCGG+TGG | - | chr7_3:41677298-41677317 | Msa1104390:intron | 45.0% |
| ! | TCATTTTGAATGCTCACCGG+AGG | + | chr7_3:41677465-41677484 | None:intergenic | 45.0% |
| AACCGCTGACCACATGTTTA+AGG | - | chr7_3:41677595-41677614 | Msa1104390:intron | 45.0% | |
| GTCCTTAAACATGTGGTCAG+CGG | + | chr7_3:41677600-41677619 | None:intergenic | 45.0% | |
| GAAGGGAAGAACCATTCAAG+TGG | + | chr7_3:41677635-41677654 | None:intergenic | 45.0% | |
| CATATGGAATGGGGAACCAT+GGG | - | chr7_3:41677947-41677966 | Msa1104390:intron | 45.0% | |
| GCTATTCTCCCCATTTATGG+TGG | - | chr7_3:41678075-41678094 | Msa1104390:intron | 45.0% | |
| ! | TCTCCCCATTTATGGTGGAA+TGG | - | chr7_3:41678080-41678099 | Msa1104390:intron | 45.0% |
| !!! | TTATTTTATAATTGAAAATA+TGG | + | chr7_3:41677360-41677379 | None:intergenic | 5.0% |
| !!! | AAATAAAAATTTGTATTTTT+TGG | - | chr7_3:41677374-41677393 | Msa1104390:intron | 5.0% |
| !!! | AATTTATTTTGATAAAAAAA+TGG | + | chr7_3:41677800-41677819 | None:intergenic | 5.0% |
| AGGCTAGTGCAACGAAGAGA+GGG | + | chr7_3:41674646-41674665 | None:intergenic | 50.0% | |
| AAGGCTAGTGCAACGAAGAG+AGG | + | chr7_3:41674647-41674666 | None:intergenic | 50.0% | |
| ATACCCAGCAAGGACTCACT+AGG | - | chr7_3:41676763-41676782 | Msa1104390:intron | 50.0% | |
| ACTCCTAGTGAGTCCTTGCT+GGG | + | chr7_3:41676769-41676788 | None:intergenic | 50.0% | |
| AACTCCTAGTGAGTCCTTGC+TGG | + | chr7_3:41676770-41676789 | None:intergenic | 50.0% | |
| ! | AAGGCATTTGCACACTTGGG+AGG | - | chr7_3:41677059-41677078 | Msa1104390:intron | 50.0% |
| AGGCATTTGCACACTTGGGA+GGG | - | chr7_3:41677060-41677079 | Msa1104390:intron | 50.0% | |
| CGTGTTTGCGAGTGATGAAG+GGG | - | chr7_3:41677148-41677167 | Msa1104390:intron | 50.0% | |
| GTGTTTGCGAGTGATGAAGG+GGG | - | chr7_3:41677149-41677168 | Msa1104390:intron | 50.0% | |
| TGTTTGCGAGTGATGAAGGG+GGG | - | chr7_3:41677150-41677169 | Msa1104390:intron | 50.0% | |
| ATGAAGGGGGGAGAGAACAA+AGG | - | chr7_3:41677162-41677181 | Msa1104390:intron | 50.0% | |
| ! | GAGAACAAAGGCATAGCCTC+TGG | - | chr7_3:41677174-41677193 | Msa1104390:intron | 50.0% |
| GCATATGGAATGGGGAACCA+TGG | - | chr7_3:41677946-41677965 | Msa1104390:intron | 50.0% | |
| GGGGAACCATGGGCATCTAA+TGG | - | chr7_3:41677957-41677976 | Msa1104390:intron | 55.0% | |
| CTGGAAGCAAGCACCTTTCC+TGG | - | chr7_3:41677992-41678011 | Msa1104390:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 41674208 | 41678226 | 41674208 | ID=Msa1104390;Name=Msa1104390 |
| chr7_3 | mRNA | 41674208 | 41678226 | 41674208 | ID=Msa1104390-mRNA-1;Parent=Msa1104390;Name=Msa1104390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.8|1|1|5|0|288 |
| chr7_3 | exon | 41678201 | 41678226 | 41678201 | ID=Msa1104390-mRNA-1:exon:8477;Parent=Msa1104390-mRNA-1 |
| chr7_3 | exon | 41677643 | 41677803 | 41677643 | ID=Msa1104390-mRNA-1:exon:8476;Parent=Msa1104390-mRNA-1 |
| chr7_3 | exon | 41675630 | 41675730 | 41675630 | ID=Msa1104390-mRNA-1:exon:8475;Parent=Msa1104390-mRNA-1 |
| chr7_3 | exon | 41675179 | 41675384 | 41675179 | ID=Msa1104390-mRNA-1:exon:8474;Parent=Msa1104390-mRNA-1 |
| chr7_3 | exon | 41674208 | 41674580 | 41674208 | ID=Msa1104390-mRNA-1:exon:8473;Parent=Msa1104390-mRNA-1 |
| chr7_3 | CDS | 41678201 | 41678226 | 41678201 | ID=Msa1104390-mRNA-1:cds;Parent=Msa1104390-mRNA-1 |
| chr7_3 | CDS | 41677643 | 41677803 | 41677643 | ID=Msa1104390-mRNA-1:cds;Parent=Msa1104390-mRNA-1 |
| chr7_3 | CDS | 41675630 | 41675730 | 41675630 | ID=Msa1104390-mRNA-1:cds;Parent=Msa1104390-mRNA-1 |
| chr7_3 | CDS | 41675179 | 41675384 | 41675179 | ID=Msa1104390-mRNA-1:cds;Parent=Msa1104390-mRNA-1 |
| chr7_3 | CDS | 41674208 | 41674580 | 41674208 | ID=Msa1104390-mRNA-1:cds;Parent=Msa1104390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
