Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218550 | XP_003609737.1 | 95.455 | 176 | 8 | 0 | 1 | 176 | 201 | 376 | 6.05e-122 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218550 | sp|A0A221J5X6|ISY2_NEPRA | 40.351 | 171 | 101 | 1 | 2 | 172 | 223 | 392 | 9.86e-39 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218550 | G7JMR9 | 95.455 | 176 | 8 | 0 | 1 | 176 | 201 | 376 | 2.89e-122 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa1218550 | 0.800114 | 1.677639e-48 | -8.615850e-47 |
| Msa0001450 | Msa1218550 | 0.825564 | 4.375141e-54 | -8.615850e-47 |
| Msa0003700 | Msa1218550 | 0.813777 | 2.155403e-51 | -8.615850e-47 |
| Msa0007480 | Msa1218550 | 0.816518 | 5.307049e-52 | -8.615850e-47 |
| Msa0017510 | Msa1218550 | 0.834750 | 2.501918e-56 | -8.615850e-47 |
| Msa0026130 | Msa1218550 | 0.830764 | 2.444253e-55 | -8.615850e-47 |
| Msa0027230 | Msa1218550 | 0.823083 | 1.676087e-53 | -8.615850e-47 |
| Msa0027260 | Msa1218550 | 0.809874 | 1.525125e-50 | -8.615850e-47 |
| Msa0028420 | Msa1218550 | 0.823268 | 1.517508e-53 | -8.615850e-47 |
| Msa0040240 | Msa1218550 | 0.800440 | 1.439646e-48 | -8.615850e-47 |
| Msa0042610 | Msa1218550 | 0.831475 | 1.635072e-55 | -8.615850e-47 |
| Msa0069330 | Msa1218550 | 0.814401 | 1.570260e-51 | -8.615850e-47 |
| Msa0075220 | Msa1218550 | 0.817585 | 3.055736e-52 | -8.615850e-47 |
| Msa0089630 | Msa1218550 | 0.808474 | 3.042488e-50 | -8.615850e-47 |
| Msa0104550 | Msa1218550 | 0.818966 | 1.487493e-52 | -8.615850e-47 |
| Msa0110970 | Msa1218550 | 0.814702 | 1.346551e-51 | -8.615850e-47 |
| Msa0116340 | Msa1218550 | 0.811752 | 5.982514e-51 | -8.615850e-47 |
| Msa0602870 | Msa1218550 | 0.806382 | 8.451936e-50 | -8.615850e-47 |
| Msa0615710 | Msa1218550 | 0.840015 | 1.121590e-57 | -8.615850e-47 |
| Msa0643890 | Msa1218550 | 0.801873 | 7.330707e-49 | -8.615850e-47 |
| Msa0669520 | Msa1218550 | 0.817859 | 2.650158e-52 | -8.615850e-47 |
| Msa0683570 | Msa1218550 | 0.810033 | 1.409432e-50 | -8.615850e-47 |
| Msa0689230 | Msa1218550 | 0.804031 | 2.625819e-49 | -8.615850e-47 |
| Msa0710800 | Msa1218550 | 0.804395 | 2.205511e-49 | -8.615850e-47 |
| Msa0730430 | Msa1218550 | 0.804761 | 1.849381e-49 | -8.615850e-47 |
| Msa0738040 | Msa1218550 | 0.815706 | 8.056005e-52 | -8.615850e-47 |
| Msa0741240 | Msa1218550 | 0.803200 | 3.904600e-49 | -8.615850e-47 |
| Msa0763070 | Msa1218550 | 0.800857 | 1.183987e-48 | -8.615850e-47 |
| Msa0765910 | Msa1218550 | 0.810710 | 1.006876e-50 | -8.615850e-47 |
| Msa0769180 | Msa1218550 | 0.801552 | 8.532082e-49 | -8.615850e-47 |
| Msa0770720 | Msa1218550 | 0.811767 | 5.936368e-51 | -8.615850e-47 |
| Msa0785210 | Msa1218550 | 0.822327 | 2.513932e-53 | -8.615850e-47 |
| Msa0826130 | Msa1218550 | 0.806280 | 8.881483e-50 | -8.615850e-47 |
| Msa0122970 | Msa1218550 | 0.812274 | 4.604948e-51 | -8.615850e-47 |
| Msa0124060 | Msa1218550 | 0.825896 | 3.651115e-54 | -8.615850e-47 |
| Msa0140820 | Msa1218550 | 0.815344 | 9.698637e-52 | -8.615850e-47 |
| Msa0157290 | Msa1218550 | 0.835251 | 1.870692e-56 | -8.615850e-47 |
| Msa0166590 | Msa1218550 | 0.823644 | 1.239702e-53 | -8.615850e-47 |
| Msa0168500 | Msa1218550 | 0.836713 | 7.963295e-57 | -8.615850e-47 |
| Msa0185490 | Msa1218550 | 0.806325 | 8.690430e-50 | -8.615850e-47 |
| Msa0197420 | Msa1218550 | 0.824270 | 8.837910e-54 | -8.615850e-47 |
| Msa0211150 | Msa1218550 | 0.804266 | 2.346479e-49 | -8.615850e-47 |
| Msa0223080 | Msa1218550 | 0.828958 | 6.730480e-55 | -8.615850e-47 |
| Msa0229230 | Msa1218550 | 0.835191 | 1.936642e-56 | -8.615850e-47 |
| Msa0369450 | Msa1218550 | 0.819273 | 1.266738e-52 | -8.615850e-47 |
| Msa0392420 | Msa1218550 | 0.827627 | 1.408927e-54 | -8.615850e-47 |
| Msa0392460 | Msa1218550 | 0.823995 | 1.025517e-53 | -8.615850e-47 |
| Msa0392490 | Msa1218550 | 0.834668 | 2.624112e-56 | -8.615850e-47 |
| Msa0395820 | Msa1218550 | 0.817403 | 3.358573e-52 | -8.615850e-47 |
| Msa0405710 | Msa1218550 | 0.824763 | 6.765998e-54 | -8.615850e-47 |
| Msa0436490 | Msa1218550 | -0.803626 | 3.186482e-49 | -8.615850e-47 |
| Msa0461630 | Msa1218550 | 0.807387 | 5.183013e-50 | -8.615850e-47 |
| Msa0468330 | Msa1218550 | 0.801671 | 8.065232e-49 | -8.615850e-47 |
| Msa0475790 | Msa1218550 | 0.813329 | 2.705194e-51 | -8.615850e-47 |
| Msa0482340 | Msa1218550 | 0.804547 | 2.049589e-49 | -8.615850e-47 |
| Msa1004550 | Msa1218550 | 0.802147 | 6.438579e-49 | -8.615850e-47 |
| Msa1004600 | Msa1218550 | 0.804448 | 2.149814e-49 | -8.615850e-47 |
| Msa1005870 | Msa1218550 | 0.839218 | 1.807398e-57 | -8.615850e-47 |
| Msa1013400 | Msa1218550 | 0.806952 | 6.407642e-50 | -8.615850e-47 |
| Msa1019430 | Msa1218550 | 0.840916 | 6.516563e-58 | -8.615850e-47 |
| Msa1019470 | Msa1218550 | 0.843712 | 1.183529e-58 | -8.615850e-47 |
| Msa1021570 | Msa1218550 | 0.801973 | 6.994249e-49 | -8.615850e-47 |
| Msa1045140 | Msa1218550 | 0.811859 | 5.670318e-51 | -8.615850e-47 |
| Msa1047980 | Msa1218550 | 0.802364 | 5.810003e-49 | -8.615850e-47 |
| Msa1051830 | Msa1218550 | 0.821683 | 3.544528e-53 | -8.615850e-47 |
| Msa1065390 | Msa1218550 | 0.800237 | 1.583526e-48 | -8.615850e-47 |
| Msa1066490 | Msa1218550 | 0.812717 | 3.683446e-51 | -8.615850e-47 |
| Msa1078170 | Msa1218550 | 0.838556 | 2.681624e-57 | -8.615850e-47 |
| Msa1085930 | Msa1218550 | 0.802706 | 4.940283e-49 | -8.615850e-47 |
| Msa1092010 | Msa1218550 | 0.831535 | 1.579676e-55 | -8.615850e-47 |
| Msa1093530 | Msa1218550 | 0.811888 | 5.587423e-51 | -8.615850e-47 |
| Msa1093840 | Msa1218550 | 0.812125 | 4.961728e-51 | -8.615850e-47 |
| Msa1096970 | Msa1218550 | 0.809214 | 2.113271e-50 | -8.615850e-47 |
| Msa1106700 | Msa1218550 | 0.811133 | 8.154102e-51 | -8.615850e-47 |
| Msa0239190 | Msa1218550 | 0.818957 | 1.494393e-52 | -8.615850e-47 |
| Msa0239570 | Msa1218550 | 0.807741 | 4.359000e-50 | -8.615850e-47 |
| Msa0255090 | Msa1218550 | 0.824279 | 8.798008e-54 | -8.615850e-47 |
| Msa0259380 | Msa1218550 | 0.813617 | 2.337875e-51 | -8.615850e-47 |
| Msa0264150 | Msa1218550 | 0.806857 | 6.710994e-50 | -8.615850e-47 |
| Msa0277180 | Msa1218550 | 0.816012 | 6.884226e-52 | -8.615850e-47 |
| Msa0292330 | Msa1218550 | 0.807381 | 5.196231e-50 | -8.615850e-47 |
| Msa0292400 | Msa1218550 | 0.818788 | 1.632385e-52 | -8.615850e-47 |
| Msa0294160 | Msa1218550 | 0.802594 | 5.209749e-49 | -8.615850e-47 |
| Msa0300690 | Msa1218550 | 0.804998 | 1.650268e-49 | -8.615850e-47 |
| Msa0302160 | Msa1218550 | 0.828319 | 9.607155e-55 | -8.615850e-47 |
| Msa0302170 | Msa1218550 | 0.813870 | 2.056271e-51 | -8.615850e-47 |
| Msa0316810 | Msa1218550 | 0.815772 | 7.787602e-52 | -8.615850e-47 |
| Msa0317340 | Msa1218550 | 0.807426 | 5.084391e-50 | -8.615850e-47 |
| Msa0339490 | Msa1218550 | 0.828841 | 7.183008e-55 | -8.615850e-47 |
| Msa0339500 | Msa1218550 | 0.840183 | 1.013401e-57 | -8.615850e-47 |
| Msa0344570 | Msa1218550 | 0.819625 | 1.052498e-52 | -8.615850e-47 |
| Msa1123380 | Msa1218550 | 0.822918 | 1.831404e-53 | -8.615850e-47 |
| Msa1124110 | Msa1218550 | 0.807577 | 4.723114e-50 | -8.615850e-47 |
| Msa1125000 | Msa1218550 | 0.803940 | 2.742812e-49 | -8.615850e-47 |
| Msa1134110 | Msa1218550 | 0.803267 | 3.782245e-49 | -8.615850e-47 |
| Msa1135390 | Msa1218550 | 0.814022 | 1.903814e-51 | -8.615850e-47 |
| Msa1140210 | Msa1218550 | 0.816428 | 5.559406e-52 | -8.615850e-47 |
| Msa1189070 | Msa1218550 | 0.814990 | 1.162346e-51 | -8.615850e-47 |
| Msa1193290 | Msa1218550 | 0.807943 | 3.947691e-50 | -8.615850e-47 |
| Msa1196440 | Msa1218550 | 0.820728 | 5.882553e-53 | -8.615850e-47 |
| Msa1209460 | Msa1218550 | 0.801545 | 8.559356e-49 | -8.615850e-47 |
| Msa1218550 | Msa1221060 | 0.809521 | 1.816240e-50 | -8.615850e-47 |
| Msa1218550 | Msa1225700 | 0.806419 | 8.300674e-50 | -8.615850e-47 |
| Msa1218550 | Msa1251160 | 0.838604 | 2.605752e-57 | -8.615850e-47 |
| Msa1218550 | Msa1284550 | 0.814438 | 1.540262e-51 | -8.615850e-47 |
| Msa1218550 | Msa1303240 | 0.808136 | 3.591455e-50 | -8.615850e-47 |
| Msa1218550 | Msa1303250 | 0.802250 | 6.133334e-49 | -8.615850e-47 |
| Msa1218550 | Msa1361400 | 0.804138 | 2.493801e-49 | -8.615850e-47 |
| Msa1218550 | Msa1361410 | 0.803495 | 3.392600e-49 | -8.615850e-47 |
| Msa1218550 | Msa1373100 | 0.808399 | 3.157077e-50 | -8.615850e-47 |
| Msa1218550 | Msa1374550 | 0.847658 | 1.006290e-59 | -8.615850e-47 |
| Msa1218550 | Msa1422950 | 0.808154 | 3.559519e-50 | -8.615850e-47 |
| Msa1218550 | Msa1423460 | 0.810518 | 1.107966e-50 | -8.615850e-47 |
| Msa1218550 | Msa1436570 | 0.997422 | 3.046126e-242 | -8.615850e-47 |
| Msa1218550 | Msa1440880 | 0.824418 | 8.160354e-54 | -8.615850e-47 |
| Msa1218550 | Msa1446810 | 0.843982 | 1.002410e-58 | -8.615850e-47 |
| Msa1218550 | Msa1446820 | 0.825345 | 4.930977e-54 | -8.615850e-47 |
| Msa1218550 | Msa1451160 | 0.837102 | 6.334454e-57 | -8.615850e-47 |
| Msa0487570 | Msa1218550 | 0.828069 | 1.103592e-54 | -8.615850e-47 |
| Msa0487630 | Msa1218550 | 0.845157 | 4.837350e-59 | -8.615850e-47 |
| Msa0524500 | Msa1218550 | 0.832182 | 1.093711e-55 | -8.615850e-47 |
| Msa0526420 | Msa1218550 | 0.836425 | 9.429951e-57 | -8.615850e-47 |
| Msa0527550 | Msa1218550 | 0.823111 | 1.651247e-53 | -8.615850e-47 |
| Msa0588140 | Msa1218550 | 0.806016 | 1.009489e-49 | -8.615850e-47 |
| Msa0588360 | Msa1218550 | 0.812103 | 5.017972e-51 | -8.615850e-47 |
| Msa0594660 | Msa1218550 | 0.801113 | 1.049307e-48 | -8.615850e-47 |
| Msa0597790 | Msa1218550 | 0.813546 | 2.423492e-51 | -8.615850e-47 |
| Msa0844560 | Msa1218550 | 0.810746 | 9.889097e-51 | -8.615850e-47 |
| Msa0861870 | Msa1218550 | 0.803268 | 3.781130e-49 | -8.615850e-47 |
| Msa0869780 | Msa1218550 | 0.810510 | 1.112055e-50 | -8.615850e-47 |
| Msa0876190 | Msa1218550 | 0.802410 | 5.686099e-49 | -8.615850e-47 |
| Msa0880140 | Msa1218550 | 0.830316 | 3.144685e-55 | -8.615850e-47 |
| Msa0880780 | Msa1218550 | 0.996795 | 2.456888e-232 | -8.615850e-47 |
| Msa0884410 | Msa1218550 | -0.802116 | 6.536079e-49 | -8.615850e-47 |
| Msa0902760 | Msa1218550 | 0.808440 | 3.093569e-50 | -8.615850e-47 |
| Msa0936340 | Msa1218550 | 0.830074 | 3.603488e-55 | -8.615850e-47 |
| Msa0944760 | Msa1218550 | 0.813199 | 2.888817e-51 | -8.615850e-47 |
| Msa0945110 | Msa1218550 | 0.814549 | 1.456085e-51 | -8.615850e-47 |
| Msa0969200 | Msa1218550 | 0.808776 | 2.622645e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218550 | MtrunA17_Chr4g0068141 | 95.455 | 176 | 8 | 0 | 1 | 176 | 201 | 376 | 5.57e-126 | 358 |
| Msa1218550 | MtrunA17_Chr4g0068121 | 77.714 | 175 | 39 | 0 | 1 | 175 | 201 | 375 | 7.76e-103 | 300 |
| Msa1218550 | MtrunA17_Chr4g0036961 | 78.409 | 176 | 38 | 0 | 1 | 176 | 201 | 376 | 2.46e-102 | 299 |
| Msa1218550 | MtrunA17_Chr3g0082001 | 40.805 | 174 | 87 | 3 | 7 | 172 | 225 | 390 | 3.39e-42 | 145 |
| Msa1218550 | MtrunA17_Chr3g0134551 | 40.805 | 174 | 87 | 3 | 7 | 172 | 225 | 390 | 3.69e-42 | 145 |
| Msa1218550 | MtrunA17_Chr1g0152791 | 39.766 | 171 | 102 | 1 | 2 | 172 | 38 | 207 | 9.88e-42 | 139 |
| Msa1218550 | MtrunA17_Chr3g0134561 | 40.116 | 172 | 101 | 2 | 2 | 172 | 220 | 390 | 7.38e-41 | 141 |
| Msa1218550 | MtrunA17_Chr3g0134571 | 39.759 | 166 | 99 | 1 | 7 | 172 | 214 | 378 | 9.10e-40 | 138 |
| Msa1218550 | MtrunA17_Chr1g0152811 | 39.181 | 171 | 103 | 1 | 2 | 172 | 256 | 425 | 2.22e-39 | 138 |
| Msa1218550 | MtrunA17_Chr1g0152831 | 41.212 | 165 | 96 | 1 | 2 | 166 | 254 | 417 | 7.31e-39 | 138 |
| Msa1218550 | MtrunA17_Chr3g0104611 | 35.429 | 175 | 107 | 3 | 3 | 172 | 204 | 377 | 5.89e-30 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218550 | AT4G24220.1 | 35.673 | 171 | 109 | 1 | 2 | 172 | 219 | 388 | 3.16e-36 | 129 |
| Msa1218550 | AT4G24220.2 | 35.673 | 171 | 109 | 1 | 2 | 172 | 218 | 387 | 3.96e-36 | 129 |
| Msa1218550 | AT5G58750.2 | 32.571 | 175 | 114 | 3 | 3 | 173 | 204 | 378 | 1.58e-23 | 95.9 |
| Msa1218550 | AT5G58750.1 | 32.571 | 175 | 114 | 3 | 3 | 173 | 212 | 386 | 1.69e-23 | 95.9 |
Find 34 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTAATAGTGTGAAATTC+TGG | 0.190417 | 8_1:+81194217 | Msa1218550:CDS |
| CGTTTCGTTATCCAGGAAAT+AGG | 0.260788 | 8_1:+81193803 | Msa1218550:CDS |
| TGCGTGATAAGGGTGAGATT+TGG | 0.302571 | 8_1:+81194043 | Msa1218550:CDS |
| GCAATTAAACGCTTGGTTCT+TGG | 0.326986 | 8_1:-81193908 | None:intergenic |
| GCGTGATAAGGGTGAGATTT+GGG | 0.351508 | 8_1:+81194044 | Msa1218550:CDS |
| TGTAGTTCAATGTTCGTAGA+TGG | 0.355494 | 8_1:-81194271 | None:intergenic |
| TGCTGTTAAGTTTGTGGAGT+TGG | 0.382859 | 8_1:+81193987 | Msa1218550:CDS |
| TGGACTTCATAAGACCAAAT+TGG | 0.385145 | 8_1:+81194086 | Msa1218550:CDS |
| GATCAGATTGTGGAGGAGTA+TGG | 0.407176 | 8_1:+81194066 | Msa1218550:CDS |
| CAAGCGTTTAATTGCACAAA+TGG | 0.411281 | 8_1:+81193916 | Msa1218550:CDS |
| TGAAAAGGAAGAGTTTGATT+TGG | 0.422569 | 8_1:+81194011 | Msa1218550:CDS |
| TCCAAAGTGTACCTATTTCC+TGG | 0.427390 | 8_1:-81193814 | None:intergenic |
| GGATTACCGTTTCGTTATCC+AGG | 0.443194 | 8_1:+81193796 | Msa1218550:CDS |
| GTTTGTGGAGTTGGATGAAA+AGG | 0.451890 | 8_1:+81193996 | Msa1218550:CDS |
| GGTGCAGTTTATGCGTGATA+AGG | 0.456957 | 8_1:+81194032 | Msa1218550:CDS |
| GTGCAGTTTATGCGTGATAA+GGG | 0.465205 | 8_1:+81194033 | Msa1218550:CDS |
| TAATCCTACCTGGCGACATA+TGG | 0.474335 | 8_1:-81193779 | None:intergenic |
| CATTTGTGCAATTAAACGCT+TGG | 0.482702 | 8_1:-81193915 | None:intergenic |
| TCCAGGAAATAGGTACACTT+TGG | 0.499854 | 8_1:+81193813 | Msa1218550:CDS |
| GTTTAATAGTGTGAAATTCT+GGG | 0.501763 | 8_1:+81194218 | Msa1218550:CDS |
| TGAGATTTGGGATCAGATTG+TGG | 0.512590 | 8_1:+81194056 | Msa1218550:CDS |
| TGCTCGCAAAGCAGCATGTG+TGG | 0.516452 | 8_1:+81193866 | Msa1218550:CDS |
| CTATTTCCTGGATAACGAAA+CGG | 0.534217 | 8_1:-81193802 | None:intergenic |
| ATGCGCTGCCATATGTCGCC+AGG | 0.550376 | 8_1:+81193771 | Msa1218550:CDS |
| GGAGCATTTCTGCGATATGA+CGG | 0.555683 | 8_1:+81193834 | Msa1218550:CDS |
| GTAGTTCAATGTTCGTAGAT+GGG | 0.556971 | 8_1:-81194270 | None:intergenic |
| GTGGGCTGCAGTTACAAAGA+AGG | 0.580004 | 8_1:+81193885 | Msa1218550:CDS |
| CACATGGAAGAGTATGTGGA+AGG | 0.602569 | 8_1:+81193948 | Msa1218550:CDS |
| GCTCGCAAAGCAGCATGTGT+GGG | 0.604913 | 8_1:+81193867 | Msa1218550:CDS |
| AACGAAACGGTAATCCTACC+TGG | 0.609340 | 8_1:-81193789 | None:intergenic |
| AATTCTGGGTGATGAAGCTG+AGG | 0.665041 | 8_1:+81194232 | Msa1218550:CDS |
| GCTGCCATATGTCGCCAGGT+AGG | 0.675590 | 8_1:+81193775 | Msa1218550:CDS |
| GATTTGGGATCAGATTGTGG+AGG | 0.682099 | 8_1:+81194059 | Msa1218550:CDS |
| ATTCTGGGTGATGAAGCTGA+GGG | 0.787809 | 8_1:+81194233 | Msa1218550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GTTTAATAGTGTGAAATTCT+GGG | + | chr8_1:81194218-81194237 | Msa1218550:CDS | 25.0% |
| TGAAAAGGAAGAGTTTGATT+TGG | + | chr8_1:81194011-81194030 | Msa1218550:CDS | 30.0% | |
| ! | ACAAGCAATTTTCTCCAATT+TGG | - | chr8_1:81194103-81194122 | None:intergenic | 30.0% |
| TGAAACTCAAATCGAAAAAC+TGG | - | chr8_1:81194141-81194160 | None:intergenic | 30.0% | |
| CGTTTAATAGTGTGAAATTC+TGG | + | chr8_1:81194217-81194236 | Msa1218550:CDS | 30.0% | |
| CTATTTCCTGGATAACGAAA+CGG | - | chr8_1:81193805-81193824 | None:intergenic | 35.0% | |
| CATTTGTGCAATTAAACGCT+TGG | - | chr8_1:81193918-81193937 | None:intergenic | 35.0% | |
| CAAGCGTTTAATTGCACAAA+TGG | + | chr8_1:81193916-81193935 | Msa1218550:CDS | 35.0% | |
| !! | TTTTCACATGGAAGAGTATG+TGG | + | chr8_1:81193944-81193963 | Msa1218550:CDS | 35.0% |
| !!! | GACTTTTGCTGTTAAGTTTG+TGG | + | chr8_1:81193981-81194000 | Msa1218550:CDS | 35.0% |
| TGGACTTCATAAGACCAAAT+TGG | + | chr8_1:81194086-81194105 | Msa1218550:CDS | 35.0% | |
| !!! | AATTGCTTGTTTTGAAGCCT+TGG | + | chr8_1:81194113-81194132 | Msa1218550:CDS | 35.0% |
| CGTTTCGTTATCCAGGAAAT+AGG | + | chr8_1:81193803-81193822 | Msa1218550:CDS | 40.0% | |
| TCCAGGAAATAGGTACACTT+TGG | + | chr8_1:81193813-81193832 | Msa1218550:CDS | 40.0% | |
| TCCAAAGTGTACCTATTTCC+TGG | - | chr8_1:81193817-81193836 | None:intergenic | 40.0% | |
| ! | GCAATTAAACGCTTGGTTCT+TGG | - | chr8_1:81193911-81193930 | None:intergenic | 40.0% |
| !! | CAAATGGTGACGTTTTCACA+TGG | + | chr8_1:81193932-81193951 | Msa1218550:CDS | 40.0% |
| TGCTGTTAAGTTTGTGGAGT+TGG | + | chr8_1:81193987-81194006 | Msa1218550:CDS | 40.0% | |
| GTTTGTGGAGTTGGATGAAA+AGG | + | chr8_1:81193996-81194015 | Msa1218550:CDS | 40.0% | |
| GTGCAGTTTATGCGTGATAA+GGG | + | chr8_1:81194033-81194052 | Msa1218550:CDS | 40.0% | |
| ! | TGAGATTTGGGATCAGATTG+TGG | + | chr8_1:81194056-81194075 | Msa1218550:CDS | 40.0% |
| AAATCGAAAAACTGGCACCA+AGG | - | chr8_1:81194133-81194152 | None:intergenic | 40.0% | |
| TAATCCTACCTGGCGACATA+TGG | - | chr8_1:81193782-81193801 | None:intergenic | 45.0% | |
| AACGAAACGGTAATCCTACC+TGG | - | chr8_1:81193792-81193811 | None:intergenic | 45.0% | |
| GGATTACCGTTTCGTTATCC+AGG | + | chr8_1:81193796-81193815 | Msa1218550:CDS | 45.0% | |
| ! | GGAGCATTTCTGCGATATGA+CGG | + | chr8_1:81193834-81193853 | Msa1218550:CDS | 45.0% |
| ! | CACATGGAAGAGTATGTGGA+AGG | + | chr8_1:81193948-81193967 | Msa1218550:CDS | 45.0% |
| GGTGCAGTTTATGCGTGATA+AGG | + | chr8_1:81194032-81194051 | Msa1218550:CDS | 45.0% | |
| TGCGTGATAAGGGTGAGATT+TGG | + | chr8_1:81194043-81194062 | Msa1218550:CDS | 45.0% | |
| GCGTGATAAGGGTGAGATTT+GGG | + | chr8_1:81194044-81194063 | Msa1218550:CDS | 45.0% | |
| ! | GATTTGGGATCAGATTGTGG+AGG | + | chr8_1:81194059-81194078 | Msa1218550:CDS | 45.0% |
| GATCAGATTGTGGAGGAGTA+TGG | + | chr8_1:81194066-81194085 | Msa1218550:CDS | 45.0% | |
| AATTCTGGGTGATGAAGCTG+AGG | + | chr8_1:81194232-81194251 | Msa1218550:CDS | 45.0% | |
| ATTCTGGGTGATGAAGCTGA+GGG | + | chr8_1:81194233-81194252 | Msa1218550:CDS | 45.0% | |
| ! | GTGGGCTGCAGTTACAAAGA+AGG | + | chr8_1:81193885-81193904 | Msa1218550:CDS | 50.0% |
| TGCTCGCAAAGCAGCATGTG+TGG | + | chr8_1:81193866-81193885 | Msa1218550:CDS | 55.0% | |
| GCTCGCAAAGCAGCATGTGT+GGG | + | chr8_1:81193867-81193886 | Msa1218550:CDS | 55.0% | |
| ATGCGCTGCCATATGTCGCC+AGG | + | chr8_1:81193771-81193790 | Msa1218550:CDS | 60.0% | |
| GCTGCCATATGTCGCCAGGT+AGG | + | chr8_1:81193775-81193794 | Msa1218550:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 81193757 | 81194287 | 81193757 | ID=Msa1218550;Name=Msa1218550 |
| chr8_1 | mRNA | 81193757 | 81194287 | 81193757 | ID=Msa1218550-mRNA-1;Parent=Msa1218550;Name=Msa1218550-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|176 |
| chr8_1 | exon | 81193757 | 81194287 | 81193757 | ID=Msa1218550-mRNA-1:exon:28714;Parent=Msa1218550-mRNA-1 |
| chr8_1 | CDS | 81193757 | 81194287 | 81193757 | ID=Msa1218550-mRNA-1:cds;Parent=Msa1218550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
