AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1027280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027280 MtrunA17_Chr7g0245691 91.919 99 6 1 1 97 232 330 9.54e-62 190
Msa1027280 MtrunA17_Chr7g0245671 91.919 99 6 1 1 97 231 329 2.69e-61 189
Msa1027280 MtrunA17_Chr7g0245641 85.859 99 12 1 1 97 268 366 3.65e-57 179
Msa1027280 MtrunA17_Chr7g0245741 75.758 99 22 1 1 97 228 326 5.32e-50 160
Msa1027280 MtrunA17_Chr7g0245711 73.737 99 24 1 1 97 190 288 4.58e-49 157
Msa1027280 MtrunA17_Chr7g0245731 73.737 99 24 1 1 97 278 376 3.95e-48 156
Msa1027280 MtrunA17_Chr7g0245631 66.667 99 31 1 1 97 228 326 1.19e-42 141
Msa1027280 MtrunA17_Chr1g0155411 48.454 97 49 1 2 97 229 325 1.29e-25 97.4
Msa1027280 MtrunA17_Chr4g0010991 46.000 100 51 2 1 97 230 329 7.94e-24 92.4
Msa1027280 MtrunA17_Chr1g0155431 48.454 97 49 1 2 97 229 325 9.55e-24 92.0
Msa1027280 MtrunA17_Chr4g0042101 41.000 100 52 3 1 97 258 353 1.61e-19 80.9
Msa1027280 MtrunA17_Chr2g0281991 39.175 97 58 1 1 97 245 340 8.52e-17 73.6
Msa1027280 MtrunA17_Chr4g0048961 33.684 95 63 0 1 95 242 336 4.28e-15 68.6
Msa1027280 MtrunA17_Chr2g0282011 37.895 95 58 1 1 95 245 338 1.16e-14 67.4
Msa1027280 MtrunA17_Chr2g0331211 38.542 96 57 2 2 97 226 319 3.73e-14 66.2
Msa1027280 MtrunA17_Chr5g0423551 35.354 99 59 2 2 97 223 319 1.06e-13 64.7
Msa1027280 MtrunA17_Chr2g0282001 35.789 95 60 1 1 95 244 337 2.58e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027280 AT2G45400.3 48.000 100 47 2 1 97 210 307 7.78e-25 95.1
Msa1027280 AT2G45400.1 48.000 100 47 2 1 97 267 364 8.56e-25 95.9
Msa1027280 AT5G42800.1 49.485 97 48 1 2 97 229 325 4.39e-24 94.0
Msa1027280 AT4G35420.1 44.000 100 46 3 2 97 228 321 3.07e-19 80.5
Msa1027280 AT1G61720.1 39.796 98 55 2 2 97 242 337 4.69e-19 80.1
Msa1027280 AT2G45400.2 51.786 56 27 0 1 56 267 322 3.46e-14 66.6
Msa1027280 AT1G25460.1 37.755 98 60 1 1 97 222 319 5.20e-14 65.9
Msa1027280 AT1G68540.2 35.714 98 62 1 1 97 117 214 3.49e-13 62.8
Msa1027280 AT1G68540.1 35.714 98 62 1 1 97 224 321 6.91e-13 62.8
Msa1027280 AT5G58490.1 37.113 97 59 2 2 97 228 323 2.65e-11 58.5

Find 59 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTAACCATTCATTTATT+TGG 0.081670 7_1:-59586089 None:intergenic
GAGAAATCTGTTCTTGAATT+TGG 0.142678 7_1:+59585208 Msa1027280:five_prime_UTR
AGTTTACTAGCTTTCTTATT+TGG 0.183198 7_1:+59585325 Msa1027280:five_prime_UTR
GTTCTAATTTCCCTTCCTTT+TGG 0.264538 7_1:-59586020 None:intergenic
GAGCAATTATATCTCCCTTT+TGG 0.266827 7_1:-59585540 None:intergenic
GATACAATGGATGAAAGTTT+TGG 0.304711 7_1:+59585116 Msa1027280:five_prime_UTR
CAATAACCTTGATAACTTCA+TGG 0.325194 7_1:-59585890 None:intergenic
ATGGGTGGATATGGACTCTT+TGG 0.340323 7_1:+59585239 Msa1027280:five_prime_UTR
GAGAACAACATGGGTGGATA+TGG 0.341009 7_1:+59585230 Msa1027280:five_prime_UTR
GATGTTGGCATTTGAAGTTC+AGG 0.343651 7_1:-59585615 None:intergenic
TCAACATCAATTATCATAGT+TGG 0.363704 7_1:+59585975 Msa1027280:three_prime_UTR
CATTTGAAGTTCAGGGTACT+TGG 0.365683 7_1:-59585607 None:intergenic
AATTGAATGTTGCAAGGAAA+AGG 0.371801 7_1:+59585855 Msa1027280:CDS
AGCATCCATGAGTTTCTTAG+AGG 0.383422 7_1:-59585788 None:intergenic
AATGGATCCAAATAAATGAA+TGG 0.423090 7_1:+59586082 Msa1027280:three_prime_UTR
GAGGTTAATTGCGGAAGCTT+AGG 0.430315 7_1:-59585769 None:intergenic
GGTACGAGATACAAGCAATA+AGG 0.431637 7_1:-59585457 None:intergenic
TCTTCAATAGTTGCAATGAA+TGG 0.434791 7_1:-59585564 None:intergenic
CTTGAACATCCTAATCCAAA+AGG 0.439060 7_1:+59585525 Msa1027280:CDS
TTTGAACCATGAAGTTATCA+AGG 0.439740 7_1:+59585884 Msa1027280:exon
AATTGATCTTTCTGTTCAAA+GGG 0.445770 7_1:+59585918 Msa1027280:three_prime_UTR
TCATCTTCTAGAGAGCTTAT+CGG 0.460094 7_1:+59585742 Msa1027280:intron
CGCCTCCTCTTATGACCAAA+AGG 0.462691 7_1:+59586005 Msa1027280:three_prime_UTR
TTCATTTGTCCTAAGCTACC+TGG 0.469552 7_1:+59585292 Msa1027280:five_prime_UTR
TAATTGATCTTTCTGTTCAA+AGG 0.471838 7_1:+59585917 Msa1027280:three_prime_UTR
ATGAAAGGTCCTACAACAAA+AGG 0.476037 7_1:-59585274 None:intergenic
TAGCCTTGACGAAATGTTTG+AGG 0.478982 7_1:+59585828 Msa1027280:CDS
ATTGAATGTTGCAAGGAAAA+GGG 0.495429 7_1:+59585856 Msa1027280:CDS
AAGAACAGATTTCTCAGCTA+GGG 0.495734 7_1:-59585200 None:intergenic
TCTAAGAAACTCATGGATGC+TGG 0.498821 7_1:+59585790 Msa1027280:CDS
TTATTGCTTGTATCTCGTAC+CGG 0.499138 7_1:+59585459 Msa1027280:five_prime_UTR
TGAACAGATCCAGGTAGCTT+AGG 0.503818 7_1:-59585301 None:intergenic
CAAGAACAGATTTCTCAGCT+AGG 0.509193 7_1:-59585201 None:intergenic
ATGTTGGCATTTGAAGTTCA+GGG 0.512887 7_1:-59585614 None:intergenic
ATTAACCTCTAAGAAACTCA+TGG 0.523086 7_1:+59585783 Msa1027280:CDS
ACACCATACGACCAAGCAAA+AGG 0.525769 7_1:-59585169 None:intergenic
GCTTGTATCTCGTACCGGTA+TGG 0.528101 7_1:+59585464 Msa1027280:exon
AGTAAACTATGAACAGATCC+AGG 0.532869 7_1:-59585310 None:intergenic
TCCTCTTATGACCAAAAGGA+AGG 0.537394 7_1:+59586009 Msa1027280:three_prime_UTR
GCATGTTGATGATGTGGCTA+GGG 0.545455 7_1:+59585488 Msa1027280:CDS
CTTGAATTTGGAGAACAACA+TGG 0.546799 7_1:+59585220 Msa1027280:five_prime_UTR
TGTAGAACTCACTTGGATGT+TGG 0.557000 7_1:-59585630 None:intergenic
ATCATCAACATGCACCATAC+CGG 0.559899 7_1:-59585478 None:intergenic
TTGAACATCCTAATCCAAAA+GGG 0.565903 7_1:+59585526 Msa1027280:CDS
TTGAATTTGGAGAACAACAT+GGG 0.589222 7_1:+59585221 Msa1027280:five_prime_UTR
AGACAAAGAAGAAGATACAA+TGG 0.599895 7_1:+59585103 Msa1027280:five_prime_UTR
GGGAAATTAGAACAAAAGAG+AGG 0.608909 7_1:+59586030 Msa1027280:three_prime_UTR
GGACGCAATTGAATGTTGCA+AGG 0.609289 7_1:+59585849 Msa1027280:CDS
CAGGGTACTTGGAAGAAACA+AGG 0.616116 7_1:-59585596 None:intergenic
CGTCCTCAAACATTTCGTCA+AGG 0.621284 7_1:-59585831 None:intergenic
CCTCTTATGACCAAAAGGAA+GGG 0.637960 7_1:+59586010 Msa1027280:three_prime_UTR
ATACACAGCAGAAGCACTTG+AGG 0.642464 7_1:-59585075 None:intergenic
TATGGTGCATGTTGATGATG+TGG 0.643007 7_1:+59585482 Msa1027280:exon
AGTTTCTTAGAGGTTAATTG+CGG 0.647629 7_1:-59585778 None:intergenic
TGCATGTTGATGATGTGGCT+AGG 0.650912 7_1:+59585487 Msa1027280:CDS
AAAGGTCCTACAACAAAAGG+TGG 0.652252 7_1:-59585271 None:intergenic
AATTTGGAGAACAACATGGG+TGG 0.654991 7_1:+59585224 Msa1027280:five_prime_UTR
TCTTCTAGAGAGCTTATCGG+AGG 0.675738 7_1:+59585745 Msa1027280:intron
GGTAGCTTAGGACAAATGAA+AGG 0.676303 7_1:-59585289 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGATGAAAATTAACAAA+TGG + chr7_1:59585403-59585422 Msa1027280:intron 15.0%
!! AATTTAACCATTCATTTATT+TGG - chr7_1:59586092-59586111 None:intergenic 15.0%
!! AATAGATGAAAATTAACAAA+TGG + chr7_1:59585403-59585422 Msa1027280:intron 15.0%
!! AATTTAACCATTCATTTATT+TGG - chr7_1:59586092-59586111 None:intergenic 15.0%
!!! TTTTAGTCAAGTTATTAACA+TGG - chr7_1:59585676-59585695 None:intergenic 20.0%
!!! TTTTAGTCAAGTTATTAACA+TGG - chr7_1:59585676-59585695 None:intergenic 20.0%
!!! AGTTTACTAGCTTTCTTATT+TGG + chr7_1:59585325-59585344 Msa1027280:five_prime_UTR 25.0%
! ATTAATATGTAGAACTCACT+TGG - chr7_1:59585640-59585659 None:intergenic 25.0%
! TAATTGATCTTTCTGTTCAA+AGG + chr7_1:59585917-59585936 Msa1027280:three_prime_UTR 25.0%
! AATTGATCTTTCTGTTCAAA+GGG + chr7_1:59585918-59585937 Msa1027280:three_prime_UTR 25.0%
! TCAACATCAATTATCATAGT+TGG + chr7_1:59585975-59585994 Msa1027280:three_prime_UTR 25.0%
!! TCACGTTATCTACATTTTAA+TGG + chr7_1:59586064-59586083 Msa1027280:three_prime_UTR 25.0%
! AATGGATCCAAATAAATGAA+TGG + chr7_1:59586082-59586101 Msa1027280:three_prime_UTR 25.0%
!!! AGTTTACTAGCTTTCTTATT+TGG + chr7_1:59585325-59585344 Msa1027280:five_prime_UTR 25.0%
! ATTAATATGTAGAACTCACT+TGG - chr7_1:59585640-59585659 None:intergenic 25.0%
! TAATTGATCTTTCTGTTCAA+AGG + chr7_1:59585917-59585936 Msa1027280:three_prime_UTR 25.0%
! AATTGATCTTTCTGTTCAAA+GGG + chr7_1:59585918-59585937 Msa1027280:three_prime_UTR 25.0%
! TCAACATCAATTATCATAGT+TGG + chr7_1:59585975-59585994 Msa1027280:three_prime_UTR 25.0%
!! TCACGTTATCTACATTTTAA+TGG + chr7_1:59586064-59586083 Msa1027280:three_prime_UTR 25.0%
! AATGGATCCAAATAAATGAA+TGG + chr7_1:59586082-59586101 Msa1027280:three_prime_UTR 25.0%
AGACAAAGAAGAAGATACAA+TGG + chr7_1:59585103-59585122 Msa1027280:five_prime_UTR 30.0%
! GATACAATGGATGAAAGTTT+TGG + chr7_1:59585116-59585135 Msa1027280:five_prime_UTR 30.0%
GAGAAATCTGTTCTTGAATT+TGG + chr7_1:59585208-59585227 Msa1027280:five_prime_UTR 30.0%
TTGAATTTGGAGAACAACAT+GGG + chr7_1:59585221-59585240 Msa1027280:five_prime_UTR 30.0%
TTGAACATCCTAATCCAAAA+GGG + chr7_1:59585526-59585545 Msa1027280:CDS 30.0%
! TTATATCTCCCTTTTGGATT+AGG - chr7_1:59585537-59585556 None:intergenic 30.0%
TCTTCAATAGTTGCAATGAA+TGG - chr7_1:59585567-59585586 None:intergenic 30.0%
TCAAGTTATTAACATGGAGA+AGG - chr7_1:59585670-59585689 None:intergenic 30.0%
AGTTTCTTAGAGGTTAATTG+CGG - chr7_1:59585781-59585800 None:intergenic 30.0%
! ATTAACCTCTAAGAAACTCA+TGG + chr7_1:59585783-59585802 Msa1027280:CDS 30.0%
AATTGAATGTTGCAAGGAAA+AGG + chr7_1:59585855-59585874 Msa1027280:CDS 30.0%
ATTGAATGTTGCAAGGAAAA+GGG + chr7_1:59585856-59585875 Msa1027280:CDS 30.0%
TTTGAACCATGAAGTTATCA+AGG + chr7_1:59585884-59585903 Msa1027280:exon 30.0%
! CAATAACCTTGATAACTTCA+TGG - chr7_1:59585893-59585912 None:intergenic 30.0%
AGACAAAGAAGAAGATACAA+TGG + chr7_1:59585103-59585122 Msa1027280:five_prime_UTR 30.0%
! GATACAATGGATGAAAGTTT+TGG + chr7_1:59585116-59585135 Msa1027280:five_prime_UTR 30.0%
GAGAAATCTGTTCTTGAATT+TGG + chr7_1:59585208-59585227 Msa1027280:five_prime_UTR 30.0%
TTGAATTTGGAGAACAACAT+GGG + chr7_1:59585221-59585240 Msa1027280:five_prime_UTR 30.0%
TTGAACATCCTAATCCAAAA+GGG + chr7_1:59585526-59585545 Msa1027280:CDS 30.0%
! TTATATCTCCCTTTTGGATT+AGG - chr7_1:59585537-59585556 None:intergenic 30.0%
TCTTCAATAGTTGCAATGAA+TGG - chr7_1:59585567-59585586 None:intergenic 30.0%
TCAAGTTATTAACATGGAGA+AGG - chr7_1:59585670-59585689 None:intergenic 30.0%
AGTTTCTTAGAGGTTAATTG+CGG - chr7_1:59585781-59585800 None:intergenic 30.0%
! ATTAACCTCTAAGAAACTCA+TGG + chr7_1:59585783-59585802 Msa1027280:CDS 30.0%
AATTGAATGTTGCAAGGAAA+AGG + chr7_1:59585855-59585874 Msa1027280:CDS 30.0%
ATTGAATGTTGCAAGGAAAA+GGG + chr7_1:59585856-59585875 Msa1027280:CDS 30.0%
TTTGAACCATGAAGTTATCA+AGG + chr7_1:59585884-59585903 Msa1027280:exon 30.0%
! CAATAACCTTGATAACTTCA+TGG - chr7_1:59585893-59585912 None:intergenic 30.0%
AAGAACAGATTTCTCAGCTA+GGG - chr7_1:59585203-59585222 None:intergenic 35.0%
CTTGAATTTGGAGAACAACA+TGG + chr7_1:59585220-59585239 Msa1027280:five_prime_UTR 35.0%
ATGAAAGGTCCTACAACAAA+AGG - chr7_1:59585277-59585296 None:intergenic 35.0%
AGTAAACTATGAACAGATCC+AGG - chr7_1:59585313-59585332 None:intergenic 35.0%
TAATCCAAGAACGTACCAAT+GGG - chr7_1:59585364-59585383 None:intergenic 35.0%
ATAATCCAAGAACGTACCAA+TGG - chr7_1:59585365-59585384 None:intergenic 35.0%
AACAAATGGAAGTTGCATTC+AGG + chr7_1:59585417-59585436 Msa1027280:intron 35.0%
TTATTGCTTGTATCTCGTAC+CGG + chr7_1:59585459-59585478 Msa1027280:five_prime_UTR 35.0%
CTTGAACATCCTAATCCAAA+AGG + chr7_1:59585525-59585544 Msa1027280:CDS 35.0%
! GAGCAATTATATCTCCCTTT+TGG - chr7_1:59585543-59585562 None:intergenic 35.0%
! ATGTTGGCATTTGAAGTTCA+GGG - chr7_1:59585617-59585636 None:intergenic 35.0%
! TCATCTTCTAGAGAGCTTAT+CGG + chr7_1:59585742-59585761 Msa1027280:intron 35.0%
! GTTCTAATTTCCCTTCCTTT+TGG - chr7_1:59586023-59586042 None:intergenic 35.0%
GGGAAATTAGAACAAAAGAG+AGG + chr7_1:59586030-59586049 Msa1027280:three_prime_UTR 35.0%
AAGAACAGATTTCTCAGCTA+GGG - chr7_1:59585203-59585222 None:intergenic 35.0%
CTTGAATTTGGAGAACAACA+TGG + chr7_1:59585220-59585239 Msa1027280:five_prime_UTR 35.0%
ATGAAAGGTCCTACAACAAA+AGG - chr7_1:59585277-59585296 None:intergenic 35.0%
AGTAAACTATGAACAGATCC+AGG - chr7_1:59585313-59585332 None:intergenic 35.0%
TAATCCAAGAACGTACCAAT+GGG - chr7_1:59585364-59585383 None:intergenic 35.0%
ATAATCCAAGAACGTACCAA+TGG - chr7_1:59585365-59585384 None:intergenic 35.0%
AACAAATGGAAGTTGCATTC+AGG + chr7_1:59585417-59585436 Msa1027280:intron 35.0%
TTATTGCTTGTATCTCGTAC+CGG + chr7_1:59585459-59585478 Msa1027280:five_prime_UTR 35.0%
CTTGAACATCCTAATCCAAA+AGG + chr7_1:59585525-59585544 Msa1027280:CDS 35.0%
! GAGCAATTATATCTCCCTTT+TGG - chr7_1:59585543-59585562 None:intergenic 35.0%
! ATGTTGGCATTTGAAGTTCA+GGG - chr7_1:59585617-59585636 None:intergenic 35.0%
! TCATCTTCTAGAGAGCTTAT+CGG + chr7_1:59585742-59585761 Msa1027280:intron 35.0%
! GTTCTAATTTCCCTTCCTTT+TGG - chr7_1:59586023-59586042 None:intergenic 35.0%
GGGAAATTAGAACAAAAGAG+AGG + chr7_1:59586030-59586049 Msa1027280:three_prime_UTR 35.0%
!!! GAACTTTGAAGCCTTTTGCT+TGG + chr7_1:59585158-59585177 Msa1027280:five_prime_UTR 40.0%
CAAGAACAGATTTCTCAGCT+AGG - chr7_1:59585204-59585223 None:intergenic 40.0%
AATTTGGAGAACAACATGGG+TGG + chr7_1:59585224-59585243 Msa1027280:five_prime_UTR 40.0%
!! CTTGTACCACCTTTTGTTGT+AGG + chr7_1:59585265-59585284 Msa1027280:five_prime_UTR 40.0%
AAAGGTCCTACAACAAAAGG+TGG - chr7_1:59585274-59585293 None:intergenic 40.0%
GGTAGCTTAGGACAAATGAA+AGG - chr7_1:59585292-59585311 None:intergenic 40.0%
TTCATTTGTCCTAAGCTACC+TGG + chr7_1:59585292-59585311 Msa1027280:five_prime_UTR 40.0%
GGTAAGTGAAAGTTTCCCAT+TGG + chr7_1:59585346-59585365 Msa1027280:intron 40.0%
GGTACGAGATACAAGCAATA+AGG - chr7_1:59585460-59585479 None:intergenic 40.0%
ATCATCAACATGCACCATAC+CGG - chr7_1:59585481-59585500 None:intergenic 40.0%
!! TATGGTGCATGTTGATGATG+TGG + chr7_1:59585482-59585501 Msa1027280:exon 40.0%
! CATTTGAAGTTCAGGGTACT+TGG - chr7_1:59585610-59585629 None:intergenic 40.0%
! GATGTTGGCATTTGAAGTTC+AGG - chr7_1:59585618-59585637 None:intergenic 40.0%
TGTAGAACTCACTTGGATGT+TGG - chr7_1:59585633-59585652 None:intergenic 40.0%
AGCATCCATGAGTTTCTTAG+AGG - chr7_1:59585791-59585810 None:intergenic 40.0%
TCTAAGAAACTCATGGATGC+TGG + chr7_1:59585790-59585809 Msa1027280:CDS 40.0%
! TAGCCTTGACGAAATGTTTG+AGG + chr7_1:59585828-59585847 Msa1027280:CDS 40.0%
! TTCCTTTTGGTCATAAGAGG+AGG - chr7_1:59586010-59586029 None:intergenic 40.0%
TCCTCTTATGACCAAAAGGA+AGG + chr7_1:59586009-59586028 Msa1027280:three_prime_UTR 40.0%
CCTCTTATGACCAAAAGGAA+GGG + chr7_1:59586010-59586029 Msa1027280:three_prime_UTR 40.0%
!!! GAACTTTGAAGCCTTTTGCT+TGG + chr7_1:59585158-59585177 Msa1027280:five_prime_UTR 40.0%
CAAGAACAGATTTCTCAGCT+AGG - chr7_1:59585204-59585223 None:intergenic 40.0%
AATTTGGAGAACAACATGGG+TGG + chr7_1:59585224-59585243 Msa1027280:five_prime_UTR 40.0%
!! CTTGTACCACCTTTTGTTGT+AGG + chr7_1:59585265-59585284 Msa1027280:five_prime_UTR 40.0%
AAAGGTCCTACAACAAAAGG+TGG - chr7_1:59585274-59585293 None:intergenic 40.0%
GGTAGCTTAGGACAAATGAA+AGG - chr7_1:59585292-59585311 None:intergenic 40.0%
TTCATTTGTCCTAAGCTACC+TGG + chr7_1:59585292-59585311 Msa1027280:five_prime_UTR 40.0%
GGTAAGTGAAAGTTTCCCAT+TGG + chr7_1:59585346-59585365 Msa1027280:intron 40.0%
GGTACGAGATACAAGCAATA+AGG - chr7_1:59585460-59585479 None:intergenic 40.0%
ATCATCAACATGCACCATAC+CGG - chr7_1:59585481-59585500 None:intergenic 40.0%
!! TATGGTGCATGTTGATGATG+TGG + chr7_1:59585482-59585501 Msa1027280:exon 40.0%
! CATTTGAAGTTCAGGGTACT+TGG - chr7_1:59585610-59585629 None:intergenic 40.0%
! GATGTTGGCATTTGAAGTTC+AGG - chr7_1:59585618-59585637 None:intergenic 40.0%
TGTAGAACTCACTTGGATGT+TGG - chr7_1:59585633-59585652 None:intergenic 40.0%
AGCATCCATGAGTTTCTTAG+AGG - chr7_1:59585791-59585810 None:intergenic 40.0%
TCTAAGAAACTCATGGATGC+TGG + chr7_1:59585790-59585809 Msa1027280:CDS 40.0%
! TAGCCTTGACGAAATGTTTG+AGG + chr7_1:59585828-59585847 Msa1027280:CDS 40.0%
! TTCCTTTTGGTCATAAGAGG+AGG - chr7_1:59586010-59586029 None:intergenic 40.0%
TCCTCTTATGACCAAAAGGA+AGG + chr7_1:59586009-59586028 Msa1027280:three_prime_UTR 40.0%
CCTCTTATGACCAAAAGGAA+GGG + chr7_1:59586010-59586029 Msa1027280:three_prime_UTR 40.0%
!! ATACACAGCAGAAGCACTTG+AGG - chr7_1:59585078-59585097 None:intergenic 45.0%
! AAGCCTTTTGCTTGGTCGTA+TGG + chr7_1:59585166-59585185 Msa1027280:five_prime_UTR 45.0%
ACACCATACGACCAAGCAAA+AGG - chr7_1:59585172-59585191 None:intergenic 45.0%
GAGAACAACATGGGTGGATA+TGG + chr7_1:59585230-59585249 Msa1027280:five_prime_UTR 45.0%
ATGGGTGGATATGGACTCTT+TGG + chr7_1:59585239-59585258 Msa1027280:five_prime_UTR 45.0%
TGAACAGATCCAGGTAGCTT+AGG - chr7_1:59585304-59585323 None:intergenic 45.0%
GTTTCCCATTGGTACGTTCT+TGG + chr7_1:59585357-59585376 Msa1027280:intron 45.0%
!! TGCATGTTGATGATGTGGCT+AGG + chr7_1:59585487-59585506 Msa1027280:CDS 45.0%
!! GCATGTTGATGATGTGGCTA+GGG + chr7_1:59585488-59585507 Msa1027280:CDS 45.0%
! CAGGGTACTTGGAAGAAACA+AGG - chr7_1:59585599-59585618 None:intergenic 45.0%
! TCTTCTAGAGAGCTTATCGG+AGG + chr7_1:59585745-59585764 Msa1027280:intron 45.0%
GAGGTTAATTGCGGAAGCTT+AGG - chr7_1:59585772-59585791 None:intergenic 45.0%
CGTCCTCAAACATTTCGTCA+AGG - chr7_1:59585834-59585853 None:intergenic 45.0%
GGACGCAATTGAATGTTGCA+AGG + chr7_1:59585849-59585868 Msa1027280:CDS 45.0%
! CTTTTGGTCATAAGAGGAGG+CGG - chr7_1:59586007-59586026 None:intergenic 45.0%
! CCCTTCCTTTTGGTCATAAG+AGG - chr7_1:59586013-59586032 None:intergenic 45.0%
!! ATACACAGCAGAAGCACTTG+AGG - chr7_1:59585078-59585097 None:intergenic 45.0%
! AAGCCTTTTGCTTGGTCGTA+TGG + chr7_1:59585166-59585185 Msa1027280:five_prime_UTR 45.0%
ACACCATACGACCAAGCAAA+AGG - chr7_1:59585172-59585191 None:intergenic 45.0%
GAGAACAACATGGGTGGATA+TGG + chr7_1:59585230-59585249 Msa1027280:five_prime_UTR 45.0%
ATGGGTGGATATGGACTCTT+TGG + chr7_1:59585239-59585258 Msa1027280:five_prime_UTR 45.0%
TGAACAGATCCAGGTAGCTT+AGG - chr7_1:59585304-59585323 None:intergenic 45.0%
GTTTCCCATTGGTACGTTCT+TGG + chr7_1:59585357-59585376 Msa1027280:intron 45.0%
!! TGCATGTTGATGATGTGGCT+AGG + chr7_1:59585487-59585506 Msa1027280:CDS 45.0%
!! GCATGTTGATGATGTGGCTA+GGG + chr7_1:59585488-59585507 Msa1027280:CDS 45.0%
! CAGGGTACTTGGAAGAAACA+AGG - chr7_1:59585599-59585618 None:intergenic 45.0%
! TCTTCTAGAGAGCTTATCGG+AGG + chr7_1:59585745-59585764 Msa1027280:intron 45.0%
GAGGTTAATTGCGGAAGCTT+AGG - chr7_1:59585772-59585791 None:intergenic 45.0%
CGTCCTCAAACATTTCGTCA+AGG - chr7_1:59585834-59585853 None:intergenic 45.0%
GGACGCAATTGAATGTTGCA+AGG + chr7_1:59585849-59585868 Msa1027280:CDS 45.0%
! CTTTTGGTCATAAGAGGAGG+CGG - chr7_1:59586007-59586026 None:intergenic 45.0%
! CCCTTCCTTTTGGTCATAAG+AGG - chr7_1:59586013-59586032 None:intergenic 45.0%
! GCTTGTATCTCGTACCGGTA+TGG + chr7_1:59585464-59585483 Msa1027280:exon 50.0%
CGCCTCCTCTTATGACCAAA+AGG + chr7_1:59586005-59586024 Msa1027280:three_prime_UTR 50.0%
! GCTTGTATCTCGTACCGGTA+TGG + chr7_1:59585464-59585483 Msa1027280:exon 50.0%
CGCCTCCTCTTATGACCAAA+AGG + chr7_1:59586005-59586024 Msa1027280:three_prime_UTR 50.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 59585028 59586113 59585028 ID=Msa1027280;Name=Msa1027280
chr7_1 mRNA 59585028 59586113 59585028 ID=Msa1027280-mRNA-1;Parent=Msa1027280;Name=Msa1027280-mRNA-1;_AED=0.34;_eAED=0.34;_QI=363|1|1|1|1|1|3|225|97
chr7_1 exon 59585028 59585346 59585028 ID=Msa1027280-mRNA-1:exon:12166;Parent=Msa1027280-mRNA-1
chr7_1 exon 59585439 59585640 59585439 ID=Msa1027280-mRNA-1:exon:12167;Parent=Msa1027280-mRNA-1
chr7_1 exon 59585753 59586113 59585753 ID=Msa1027280-mRNA-1:exon:12168;Parent=Msa1027280-mRNA-1
chr7_1 five_prime_UTR 59585028 59585346 59585028 ID=Msa1027280-mRNA-1:five_prime_utr;Parent=Msa1027280-mRNA-1
chr7_1 five_prime_UTR 59585439 59585482 59585439 ID=Msa1027280-mRNA-1:five_prime_utr;Parent=Msa1027280-mRNA-1
chr7_1 CDS 59585483 59585640 59585483 ID=Msa1027280-mRNA-1:cds;Parent=Msa1027280-mRNA-1
chr7_1 CDS 59585753 59585888 59585753 ID=Msa1027280-mRNA-1:cds;Parent=Msa1027280-mRNA-1
chr7_1 three_prime_UTR 59585889 59586113 59585889 ID=Msa1027280-mRNA-1:three_prime_utr;Parent=Msa1027280-mRNA-1
Gene Sequence

>Msa1027280

ATGGTGCATGTTGATGATGTGGCTAGGGCACATATATTCTTACTTGAACATCCTAATCCAAAAGGGAGATATAATTGCTCACCATTCATTGCAACTATTGAAGAAATAGTTGACCTTGTTTCTTCCAAGTACCCTGAACTTCAAATGCCAACATCCAAAGAGCTTATCGGAGGTCCTAAGCTTCCGCAATTAACCTCTAAGAAACTCATGGATGCTGGATTCAAGTTTAAATATAGCCTTGACGAAATGTTTGAGGACGCAATTGAATGTTGCAAGGAAAAGGGTTATCTTTGA
Protein sequence

>Msa1027280

MVHVDDVARAHIFLLEHPNPKGRYNCSPFIATIEEIVDLVSSKYPELQMPTSKELIGGPKLPQLTSKKLMDAGFKFKYSLDEMFEDAIECCKEKGYL*