AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1040380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040380 MtrunA17_Chr7g0271151 99.762 420 1 0 1 420 1 420 0.0 858
Msa1040380 MtrunA17_Chr3g0126081 35.955 267 148 4 20 265 53 317 9.72e-42 154
Msa1040380 MtrunA17_Chr2g0300991 34.409 279 162 4 20 279 31 307 3.46e-40 148
Msa1040380 MtrunA17_Chr3g0146011 34.201 269 151 5 35 277 38 306 2.63e-36 139
Msa1040380 MtrunA17_Chr2g0281261 29.670 273 168 5 15 271 18 282 4.08e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040380 AT3G05940.1 77.566 419 93 1 1 418 1 419 0.0 671
Msa1040380 AT5G26740.2 75.592 422 101 2 1 420 1 422 0.0 637
Msa1040380 AT5G26740.3 75.592 422 101 2 1 420 1 422 0.0 637
Msa1040380 AT5G26740.1 75.592 422 101 2 1 420 1 422 0.0 637
Msa1040380 AT1G77220.1 36.431 269 152 3 20 269 53 321 9.27e-43 157
Msa1040380 AT4G38360.2 34.520 281 161 5 20 277 31 311 1.41e-41 153
Msa1040380 AT1G23070.1 35.018 277 150 5 15 269 23 291 2.74e-37 140
Msa1040380 AT1G77220.2 33.333 273 163 3 17 270 50 322 5.77e-37 138
Msa1040380 AT4G38360.1 32.812 256 151 3 18 252 29 284 4.41e-34 129
Msa1040380 AT4G21570.1 31.228 285 162 9 12 273 12 285 2.78e-29 116
Msa1040380 AT1G11200.1 29.749 279 174 5 15 278 19 290 8.88e-29 114
Msa1040380 AT4G21570.2 29.114 316 158 11 12 273 12 315 1.70e-23 100

Find 145 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTGTAACAACAACTAAAA+TGG 0.171683 7_1:+77731609 None:intergenic
TCTGCTGCAGGAACTTCTTC+TGG 0.174386 7_1:+77729474 None:intergenic
GATCTCAATCCTCACCAATT+AGG 0.203117 7_1:-77733639 Msa1040380:five_prime_UTR
ACCAATTAGGGTTGAGATAA+TGG 0.231192 7_1:-77733626 Msa1040380:exon
CCCATTATCTCAACCCTAAT+TGG 0.247149 7_1:+77733625 None:intergenic
TTTCTCACATTATCCATCTC+TGG 0.262507 7_1:+77729699 None:intergenic
TTGCTTTCCTCCTATACCTT+TGG 0.282986 7_1:-77731911 Msa1040380:CDS
GATCTTCTCGGATCTGATTC+TGG 0.285469 7_1:-77733684 Msa1040380:five_prime_UTR
CTGTTGTATTCCTTACTTAC+TGG 0.302664 7_1:-77731402 Msa1040380:CDS
AATCTGCTTAAATCCTTTCC+TGG 0.317895 7_1:+77729307 None:intergenic
AGCGTGGTTTCTTACATTCC+AGG 0.325366 7_1:-77729325 Msa1040380:three_prime_UTR
AGTAGTACTCCCTCAAATTC+TGG 0.343585 7_1:-77729615 Msa1040380:CDS
CCAATTAGGGTTGAGATAAT+GGG 0.345820 7_1:-77733625 Msa1040380:exon
ATCTCAATCCTCACCAATTA+GGG 0.346136 7_1:-77733638 Msa1040380:five_prime_UTR
CTAGCATGGGTTGGTGGTCC+TGG 0.350385 7_1:-77731994 Msa1040380:CDS
GCTCCAGCATATTCTTTGTA+TGG 0.352134 7_1:+77730030 None:intergenic
TCCTGTCACTTTGTCTAGCA+TGG 0.352706 7_1:-77732008 Msa1040380:CDS
CACCGTCGGTGCAATCGCTT+TGG 0.369605 7_1:-77733560 Msa1040380:CDS
ACAATAATGGCGACTGTTGT+TGG 0.369789 7_1:+77733746 None:intergenic
CACACACAGACACACACGTT+TGG 0.371768 7_1:-77733900 Msa1040380:five_prime_UTR
TTCTTTCTTGCTGCAAAGTC+GGG 0.373340 7_1:-77730147 Msa1040380:CDS
ATATGGTATGGACGCAGAAT+TGG 0.374420 7_1:+77729533 None:intergenic
AGGAACTTCTTCTGGGTAAC+TGG 0.377025 7_1:+77729482 None:intergenic
ACTTTATGATAATAAACTTT+GGG 0.378211 7_1:+77731425 None:intergenic
TCCATGCATTATGTAGAGTT+GGG 0.380167 7_1:-77729042 Msa1040380:three_prime_UTR
TTTATCATATTCGATCTTCT+CGG 0.380906 7_1:-77733696 Msa1040380:five_prime_UTR
TGGGAATGGAGGCTGACAAC+GGG 0.387352 7_1:+77729243 None:intergenic
CAGCAGATAAAGCCGGTCTT+AGG 0.392911 7_1:-77729458 Msa1040380:CDS
CGTGGTTTGACCGCTAGCCT+TGG 0.393123 7_1:-77729991 Msa1040380:CDS
TTCTCACATTATCCATCTCT+GGG 0.397889 7_1:+77729700 None:intergenic
TACAGATAACTTACACTTCA+CGG 0.401405 7_1:+77732873 None:intergenic
GACTTTATGATAATAAACTT+TGG 0.402571 7_1:+77731424 None:intergenic
TTGTTATAAGTTTGAGTGGT+CGG 0.403312 7_1:-77731966 Msa1040380:CDS
TATCTACAATTGCACATAAG+TGG 0.407887 7_1:+77729149 None:intergenic
GAAGAAGAAAGAAACAATAA+TGG 0.411106 7_1:+77733733 None:intergenic
CTCGGATCTGATTCTGGCTA+GGG 0.413980 7_1:-77733678 Msa1040380:five_prime_UTR
ACACACAGACACACACGTTT+GGG 0.417249 7_1:-77733899 Msa1040380:five_prime_UTR
TTCCATGCATTATGTAGAGT+TGG 0.420040 7_1:-77729043 Msa1040380:three_prime_UTR
GCATCAGAGTTTGAAGCATC+AGG 0.427306 7_1:+77729585 None:intergenic
CTGTTTCAGCTATGAAGCTT+GGG 0.427514 7_1:-77732043 Msa1040380:intron
ACGGTCCATGTTATTTGTCT+TGG 0.431237 7_1:-77729210 Msa1040380:three_prime_UTR
GTTCTTTCTTGCTGCAAAGT+CGG 0.434663 7_1:-77730148 Msa1040380:CDS
ACTTACCCATCCAAAGGTAT+AGG 0.437456 7_1:+77731901 None:intergenic
AAATTACCTGCCAGTAAGTA+AGG 0.437928 7_1:+77731392 None:intergenic
ATGGCGACTGTTGTTGGCTT+CGG 0.438083 7_1:+77733752 None:intergenic
CCTGTCACTTTGTCTAGCAT+GGG 0.441185 7_1:-77732007 Msa1040380:CDS
GTGGTTTGACCGCTAGCCTT+GGG 0.442097 7_1:-77729990 Msa1040380:CDS
CATTCAGAGCTAGGTTGGTT+GGG 0.442787 7_1:-77729421 Msa1040380:three_prime_UTR
AGTGTAACAACAACTAAAAT+GGG 0.443292 7_1:+77731610 None:intergenic
CTGCTGCAGGAACTTCTTCT+GGG 0.444198 7_1:+77729475 None:intergenic
ATGTAGAGTTGGGTTCATAT+TGG 0.444490 7_1:-77729032 Msa1040380:three_prime_UTR
TCAATAAGTGTCAAATCATA+TGG 0.449032 7_1:+77729516 None:intergenic
AGATACAAGTATGACTGCTT+TGG 0.453832 7_1:+77731544 None:intergenic
GAATATGCTGGAGCTAATAT+AGG 0.458813 7_1:-77730021 Msa1040380:CDS
TTTCCTCCTATACCTTTGGA+TGG 0.458821 7_1:-77731907 Msa1040380:CDS
ACTGTTTCAGCTATGAAGCT+TGG 0.464786 7_1:-77732044 Msa1040380:intron
TTCTTTACAACCACAGTGAA+GGG 0.466359 7_1:-77729770 Msa1040380:CDS
TGTTATAAGTTTGAGTGGTC+GGG 0.467257 7_1:-77731965 Msa1040380:CDS
TCTGAAAACCGAAAAGTAGA+AGG 0.467346 7_1:-77733857 Msa1040380:five_prime_UTR
TCTCGGATCTGATTCTGGCT+AGG 0.468110 7_1:-77733679 Msa1040380:five_prime_UTR
CATATTGTAATTGTCTCCGT+TGG 0.470280 7_1:-77729183 Msa1040380:three_prime_UTR
CTTTGTCTAGCATGGGTTGG+TGG 0.473508 7_1:-77732000 Msa1040380:CDS
ACACTTATTCTTTACGCTAA+GGG 0.475471 7_1:-77731592 Msa1040380:CDS
AACTTTGGGACTGGATTGAA+TGG 0.476786 7_1:+77731439 None:intergenic
TGATTTGACACTTATTGACT+TGG 0.478189 7_1:-77729511 Msa1040380:CDS
TACACTTATTCTTTACGCTA+AGG 0.478364 7_1:-77731593 Msa1040380:CDS
ACATTCAGAGCTAGGTTGGT+TGG 0.481284 7_1:-77729422 Msa1040380:three_prime_UTR
ATGATAATAAACTTTGGGAC+TGG 0.490038 7_1:+77731430 None:intergenic
CAGTCAAATTTCTTGAGTAT+CGG 0.493051 7_1:+77729088 None:intergenic
AAGTGTCAAATCATATGGTA+TGG 0.493986 7_1:+77729521 None:intergenic
TTATCCATCTCTGGGCCAAT+CGG 0.496708 7_1:+77729708 None:intergenic
AAGCAGCTTCGTCAGCATCC+TGG 0.498366 7_1:+77730118 None:intergenic
TAGGTTCAGTATAATTAAGA+AGG 0.501333 7_1:+77733515 None:intergenic
TTCCTCCTATACCTTTGGAT+GGG 0.504704 7_1:-77731906 Msa1040380:intron
AAACTTATAACAACTGATCC+AGG 0.504735 7_1:+77731976 None:intergenic
TCACGAACGTTTGTTCCGAT+TGG 0.505852 7_1:-77729723 Msa1040380:CDS
TGTATTCCTTACTTACTGGC+AGG 0.506772 7_1:-77731398 Msa1040380:intron
AGGCAGTGAACCAGAATTTG+AGG 0.509018 7_1:+77729605 None:intergenic
TCACTTTGTCTAGCATGGGT+TGG 0.514179 7_1:-77732003 Msa1040380:CDS
TGCAAAGTCGGGATTCATCC+AGG 0.517372 7_1:-77730136 Msa1040380:CDS
CACTTATTCTTTACGCTAAG+GGG 0.518846 7_1:-77731591 Msa1040380:CDS
AACCACAGTGAAGGGGAAGA+AGG 0.518899 7_1:-77729762 Msa1040380:CDS
ACAATGAAGCGTTGATAAGT+AGG 0.519462 7_1:+77733496 None:intergenic
TTGAAAGCCGCGGTAAAACA+AGG 0.520223 7_1:+77732912 None:intergenic
TTTCCATACAAAGAATATGC+TGG 0.525305 7_1:-77730033 Msa1040380:CDS
GATAAGGAACATTCAGAGCT+AGG 0.526347 7_1:-77729430 Msa1040380:three_prime_UTR
AGACCGGCTTTATCTGCTGC+AGG 0.526348 7_1:+77729462 None:intergenic
TACAATTGCACATAAGTGGA+TGG 0.530767 7_1:+77729153 None:intergenic
TTCATACGTAAGTGCAAGCA+AGG 0.532037 7_1:-77731658 Msa1040380:CDS
TTACGCTAAGGGGAAATACA+AGG 0.532724 7_1:-77731581 Msa1040380:CDS
CGTGTGTGTCTGTGTGTGTG+TGG 0.533924 7_1:+77733905 None:intergenic
AAGAAGGAACAAGGAAGTAC+AGG 0.535851 7_1:-77729746 Msa1040380:CDS
AAGGCTAGCGGTCAAACCAC+GGG 0.540121 7_1:+77729993 None:intergenic
AGCCAAAGCGATTGCACCGA+CGG 0.545111 7_1:+77733558 None:intergenic
CCTTATCGATCACCTAAGAC+CGG 0.547244 7_1:+77729446 None:intergenic
TGTATGGAAATGCATAAAAG+TGG 0.547274 7_1:+77730046 None:intergenic
TGTTGTTGGCTTCGGTAACA+AGG 0.548815 7_1:+77733760 None:intergenic
GGCAGTGAACCAGAATTTGA+GGG 0.549362 7_1:+77729606 None:intergenic
AGGAACATTCAGAGCTAGGT+TGG 0.553513 7_1:-77729426 Msa1040380:three_prime_UTR
GGTTTCTTACATTCCAGGAA+AGG 0.555860 7_1:-77729320 Msa1040380:three_prime_UTR
TCACCTGGTGGACTGTATCA+TGG 0.557444 7_1:+77729941 None:intergenic
ACGTTTGGGTTCTCGCGTTG+TGG 0.561799 7_1:-77733885 Msa1040380:five_prime_UTR
AATCAAATCTTCCTTGCTTG+TGG 0.562585 7_1:-77729562 Msa1040380:CDS
GTTCTTTACAACCACAGTGA+AGG 0.564984 7_1:-77729771 Msa1040380:CDS
CAAGGCTAGCGGTCAAACCA+CGG 0.567441 7_1:+77729992 None:intergenic
TACCCATCCAAAGGTATAGG+AGG 0.567651 7_1:+77731904 None:intergenic
TGTTCCGATTGGCCCAGAGA+TGG 0.569333 7_1:-77729712 Msa1040380:CDS
CTAAGGGGAAATACAAGGAT+GGG 0.571154 7_1:-77731576 Msa1040380:CDS
TCAGTTGTTATAAGTTTGAG+TGG 0.572193 7_1:-77731970 Msa1040380:CDS
TGAGATGCTTATTGCTGCAG+TGG 0.573649 7_1:-77730070 Msa1040380:CDS
CCATTCCCAAGCAAACAAAA+CGG 0.578374 7_1:-77729229 Msa1040380:three_prime_UTR
TTTGGGTTCTCGCGTTGTGG+TGG 0.578721 7_1:-77733882 Msa1040380:five_prime_UTR
ACCCAACTCTACATAATGCA+TGG 0.581229 7_1:+77729041 None:intergenic
GTTCCTGCAGCAGATAAAGC+CGG 0.587118 7_1:-77729465 Msa1040380:CDS
GCTAAGGGGAAATACAAGGA+TGG 0.587400 7_1:-77731577 Msa1040380:CDS
TTGGGAATGGAGGCTGACAA+CGG 0.589061 7_1:+77729242 None:intergenic
CCCATGCTAGACAAAGTGAC+AGG 0.598216 7_1:+77732007 None:intergenic
CAATTAGGGTTGAGATAATG+GGG 0.600956 7_1:-77733624 Msa1040380:exon
TATCTCAACCCTAATTGGTG+AGG 0.604064 7_1:+77733630 None:intergenic
ACGACTATTAATGATTCTGA+TGG 0.605121 7_1:-77733947 Msa1040380:five_prime_UTR
ACAATTGCACATAAGTGGAT+GGG 0.606670 7_1:+77729154 None:intergenic
GAGATGCTTATTGCTGCAGT+GGG 0.611426 7_1:-77730069 Msa1040380:CDS
CTATACATTCTCATATACAA+TGG 0.615648 7_1:-77731512 Msa1040380:CDS
GTGAAGGGGAAGAAGGAACA+AGG 0.618383 7_1:-77729755 Msa1040380:CDS
TATGCTGGAGCTAATATAGG+TGG 0.621058 7_1:-77730018 Msa1040380:CDS
ATTGGACACATCCACAAGCA+AGG 0.624740 7_1:+77729551 None:intergenic
AGAACATAATCATGATACGT+TGG 0.630961 7_1:+77729789 None:intergenic
CAAAGCATGCCCAAGGCTAG+CGG 0.631165 7_1:+77729981 None:intergenic
GTGTGTGTCTGTGTGTGTGT+GGG 0.632118 7_1:+77733906 None:intergenic
TTCCTTCTTCCCCTTCACTG+TGG 0.632503 7_1:+77729760 None:intergenic
TTACCATGATACAGTCCACC+AGG 0.635265 7_1:-77729944 Msa1040380:intron
ATGCAAACTTACCCATCCAA+AGG 0.637240 7_1:+77731895 None:intergenic
TCTTTACAACCACAGTGAAG+GGG 0.644033 7_1:-77729769 Msa1040380:CDS
TAAGCATATAACTGGAAACA+AGG 0.644662 7_1:-77729673 Msa1040380:CDS
TCAACTTCAAAGCATGCCCA+AGG 0.650573 7_1:+77729974 None:intergenic
GGGAATGGAGGCTGACAACG+GGG 0.657460 7_1:+77729244 None:intergenic
GAAGACCAAGACAAATAACA+TGG 0.664001 7_1:+77729205 None:intergenic
TGAAAGCCGCGGTAAAACAA+GGG 0.670598 7_1:+77732913 None:intergenic
AGTGGATGGGACACAACCAA+CGG 0.679096 7_1:+77729167 None:intergenic
CAAGTCATCAGACAGACTGA+CGG 0.684226 7_1:+77731934 None:intergenic
TTAAAGTAGATTGAAAGCCG+CGG 0.686396 7_1:+77732902 None:intergenic
TCATACGTAAGTGCAAGCAA+GGG 0.690075 7_1:-77731657 Msa1040380:CDS
AGAGAACTATGTCTCAAGCG+TGG 0.710285 7_1:-77729341 Msa1040380:three_prime_UTR
GCTAATATAGGTGGATCCCG+TGG 0.715148 7_1:-77730009 Msa1040380:CDS
AATTAGGGTTGAGATAATGG+GGG 0.759621 7_1:-77733623 Msa1040380:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATAATTTCAAATTC+AGG + chr7_1:77730818-77730837 None:intergenic 10.0%
!!! TTTTAAAAAAAAACTTTAAG+AGG - chr7_1:77731179-77731198 Msa1040380:intron 10.0%
!! AGTAAGTAAAAAAAAAAAAA+AGG + chr7_1:77732258-77732277 None:intergenic 10.0%
!!! AAAGTAGTAATTTTCAATTT+TGG - chr7_1:77729131-77729150 Msa1040380:three_prime_UTR 15.0%
!!! AAGTAGTAATTTTCAATTTT+GGG - chr7_1:77729132-77729151 Msa1040380:three_prime_UTR 15.0%
!! ATATAGAAAGTTGTAAATTA+TGG - chr7_1:77729761-77729780 Msa1040380:CDS 15.0%
!! TATATCTAAAAAATTGTCAT+TGG - chr7_1:77730425-77730444 Msa1040380:intron 15.0%
!! ATATCTAAAAAATTGTCATT+GGG - chr7_1:77730426-77730445 Msa1040380:intron 15.0%
!!! ATGTTTATTTTTCTAATGAT+AGG - chr7_1:77730451-77730470 Msa1040380:intron 15.0%
!! AATGTTAAATAGTAAATGAA+GGG + chr7_1:77730547-77730566 None:intergenic 15.0%
!! TAATGTTAAATAGTAAATGA+AGG + chr7_1:77730548-77730567 None:intergenic 15.0%
!! ACTTTATGATAATAAACTTT+GGG + chr7_1:77731514-77731533 None:intergenic 15.0%
!!! ATCAAATTATTTTTTGAAGA+TGG - chr7_1:77732662-77732681 Msa1040380:intron 15.0%
!!! TTTTTTGTTTTTCATTTCTT+AGG - chr7_1:77732758-77732777 Msa1040380:intron 15.0%
!!! TTTTTGTTTTTCATTTCTTA+GGG - chr7_1:77732759-77732778 Msa1040380:intron 15.0%
!! TATCTAAAAAATTGTCATTG+GGG - chr7_1:77730427-77730446 Msa1040380:intron 20.0%
!! ATGTTAAATAGTAAATGAAG+GGG + chr7_1:77730546-77730565 None:intergenic 20.0%
!! GACTTTATGATAATAAACTT+TGG + chr7_1:77731515-77731534 None:intergenic 20.0%
!!! TTATACATCTTTCGTTTTTA+TGG - chr7_1:77731567-77731586 Msa1040380:CDS 20.0%
!!! TGTTTTATGTTACCATTAAA+AGG - chr7_1:77731678-77731697 Msa1040380:intron 20.0%
!! TGAGAATAACATTATAAGAT+GGG + chr7_1:77731996-77732015 None:intergenic 20.0%
!! TTGAGAATAACATTATAAGA+TGG + chr7_1:77731997-77732016 None:intergenic 20.0%
!!! AAATTCTAAGCTTGTTTATA+TGG - chr7_1:77732543-77732562 Msa1040380:intron 20.0%
!! TATGGTCATAGTAATAAAAA+AGG - chr7_1:77732561-77732580 Msa1040380:intron 20.0%
!! ATTATTTATTTGCATGCAAA+AGG - chr7_1:77732616-77732635 Msa1040380:intron 20.0%
!!! TTTTGTTTTTCATTTCTTAG+GGG - chr7_1:77732760-77732779 Msa1040380:intron 20.0%
!! AGAAAAAATAAGCATATAAC+TGG - chr7_1:77733255-77733274 Msa1040380:intron 20.0%
!! TAGTAAAATAAAAACGTCAA+TGG + chr7_1:77733944-77733963 None:intergenic 20.0%
! GAAGAAGAAAGAAACAATAA+TGG + chr7_1:77729206-77729225 None:intergenic 25.0%
! TTTATCATATTCGATCTTCT+CGG - chr7_1:77729240-77729259 Msa1040380:three_prime_UTR 25.0%
! TAGGTTCAGTATAATTAAGA+AGG + chr7_1:77729424-77729443 None:intergenic 25.0%
! TACATAAACAAAGAAAAACG+TGG + chr7_1:77729528-77729547 None:intergenic 25.0%
!! TCATTGGTGTATTTGTTAAT+TGG - chr7_1:77729570-77729589 Msa1040380:CDS 25.0%
!!! TTGTTTTTCACTTAGTTGAA+AGG - chr7_1:77729677-77729696 Msa1040380:CDS 25.0%
!! TGTTTTTCACTTAGTTGAAA+GGG - chr7_1:77729678-77729697 Msa1040380:CDS 25.0%
! AACCAAATAGGTAAAACAAT+GGG + chr7_1:77729816-77729835 None:intergenic 25.0%
! GAAAATGAAGAAGAAATCAA+AGG + chr7_1:77729864-77729883 None:intergenic 25.0%
!!! AAACTTTAATTTTCTCTGAC+AGG - chr7_1:77729976-77729995 Msa1040380:CDS 25.0%
!! AACTTATTGGTTGTGATTAA+GGG - chr7_1:77730179-77730198 Msa1040380:intron 25.0%
!! ACAACATCATGATTGATTTA+AGG - chr7_1:77730259-77730278 Msa1040380:intron 25.0%
! TGTTAAATAGTAAATGAAGG+GGG + chr7_1:77730545-77730564 None:intergenic 25.0%
!! TTTGTATTTTCTTTTGCTAG+AGG - chr7_1:77730577-77730596 Msa1040380:intron 25.0%
! TGATTTATGATAGAACACTA+TGG - chr7_1:77730667-77730686 Msa1040380:intron 25.0%
!! TTGCATCTGATTCATATTTT+TGG - chr7_1:77731058-77731077 Msa1040380:intron 25.0%
!! AGGTATATATAACCATTTTC+AGG + chr7_1:77731100-77731119 None:intergenic 25.0%
! CATCTATGAAACAAATTCAA+AGG + chr7_1:77731134-77731153 None:intergenic 25.0%
!! AAAAAAAACTTTAAGAGGCT+AGG - chr7_1:77731184-77731203 Msa1040380:intron 25.0%
! AGTGTAACAACAACTAAAAT+GGG + chr7_1:77731329-77731348 None:intergenic 25.0%
! AAGTGTAACAACAACTAAAA+TGG + chr7_1:77731330-77731349 None:intergenic 25.0%
! CTATACATTCTCATATACAA+TGG - chr7_1:77731424-77731443 Msa1040380:CDS 25.0%
!! CTATGCTTTTCTCATATTTT+CGG - chr7_1:77731591-77731610 Msa1040380:CDS 25.0%
! CAAAATACAATTCACAAGAA+AGG + chr7_1:77731888-77731907 None:intergenic 25.0%
!! ACATTATAAGATGGGATTTT+TGG + chr7_1:77731988-77732007 None:intergenic 25.0%
!!! ACTGTTTTTTCTTATACACA+AGG - chr7_1:77732275-77732294 Msa1040380:intron 25.0%
!!! CTGTTTTTTCTTATACACAA+GGG - chr7_1:77732276-77732295 Msa1040380:intron 25.0%
! AATCAATTATGGAGTAAAGA+TGG + chr7_1:77732390-77732409 None:intergenic 25.0%
! TCTTTACTCCATAATTGATT+TGG - chr7_1:77732390-77732409 Msa1040380:intron 25.0%
!! TTTTCTATGTATGCTAAACT+TGG + chr7_1:77732420-77732439 None:intergenic 25.0%
! AGGTAAGTTAAAAATGTAGT+TGG + chr7_1:77732482-77732501 None:intergenic 25.0%
! TTTGTTAATTGCTTTGTAGT+GGG - chr7_1:77732639-77732658 Msa1040380:intron 25.0%
!!! TTTGTTTTTCATTTCTTAGG+GGG - chr7_1:77732761-77732780 Msa1040380:intron 25.0%
! ACACAAGGAACTATAAAATA+TGG + chr7_1:77733051-77733070 None:intergenic 25.0%
! TCAATAAGTGTCAAATCATA+TGG + chr7_1:77733423-77733442 None:intergenic 25.0%
!!! TAAATGTTTTTGCTATAGAG+AGG - chr7_1:77733538-77733557 Msa1040380:CDS 25.0%
ACGACTATTAATGATTCTGA+TGG - chr7_1:77728989-77729008 Msa1040380:three_prime_UTR 30.0%
GCGATAACATAGAAAAAAAG+CGG + chr7_1:77729347-77729366 None:intergenic 30.0%
AAGAAGAGAAATTAACTGAC+CGG + chr7_1:77729485-77729504 None:intergenic 30.0%
TATGTATTGTATTCCCTACT+AGG - chr7_1:77729542-77729561 Msa1040380:CDS 30.0%
ACCAATGAAAAAACCTAGTA+GGG + chr7_1:77729558-77729577 None:intergenic 30.0%
TTTCAACAGTGACACATTTA+GGG + chr7_1:77729641-77729660 None:intergenic 30.0%
ATTTCAACAGTGACACATTT+AGG + chr7_1:77729642-77729661 None:intergenic 30.0%
!! TACCCATTGTTTTACCTATT+TGG - chr7_1:77729811-77729830 Msa1040380:intron 30.0%
GAACCAAATAGGTAAAACAA+TGG + chr7_1:77729817-77729836 None:intergenic 30.0%
AAGTGCTCTTGAAAATCTAA+TGG - chr7_1:77729886-77729905 Msa1040380:intron 30.0%
AGTGCTCTTGAAAATCTAAT+GGG - chr7_1:77729887-77729906 Msa1040380:intron 30.0%
TACAGATAACTTACACTTCA+CGG + chr7_1:77730066-77730085 None:intergenic 30.0%
CTAAATAACAGCAACAACAA+AGG + chr7_1:77730112-77730131 None:intergenic 30.0%
ACAGGGAGGAAAAAAATATA+CGG + chr7_1:77730149-77730168 None:intergenic 30.0%
! ATAAGTTGAACCATGAAACA+GGG + chr7_1:77730166-77730185 None:intergenic 30.0%
! AATAAGTTGAACCATGAAAC+AGG + chr7_1:77730167-77730186 None:intergenic 30.0%
TGTTTCATGGTTCAACTTAT+TGG - chr7_1:77730166-77730185 Msa1040380:intron 30.0%
! CAACTTATTGGTTGTGATTA+AGG - chr7_1:77730178-77730197 Msa1040380:intron 30.0%
AGCTATGTATGATATATCAC+TGG + chr7_1:77730219-77730238 None:intergenic 30.0%
! CATGATTGATTTAAGGTTCT+AGG - chr7_1:77730266-77730285 Msa1040380:intron 30.0%
CTTCATCGTATACATATCAA+GGG + chr7_1:77730313-77730332 None:intergenic 30.0%
ACTTCATCGTATACATATCA+AGG + chr7_1:77730314-77730333 None:intergenic 30.0%
!! CACTTTTTATCCTACAAACA+TGG + chr7_1:77730368-77730387 None:intergenic 30.0%
AGAATAACCAATGAACTAGA+AGG + chr7_1:77730399-77730418 None:intergenic 30.0%
! CTAGTTCATTGGTTATTCTT+TGG - chr7_1:77730400-77730419 Msa1040380:intron 30.0%
GTTAAATAGTAAATGAAGGG+GGG + chr7_1:77730544-77730563 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG - chr7_1:77730635-77730654 Msa1040380:intron 30.0%
AAACAGTTGAGAAGAGAAAA+TGG + chr7_1:77730879-77730898 None:intergenic 30.0%
AAACTTATAACAACTGATCC+AGG + chr7_1:77730963-77730982 None:intergenic 30.0%
TCAGTTGTTATAAGTTTGAG+TGG - chr7_1:77730966-77730985 Msa1040380:intron 30.0%
TTGTTATAAGTTTGAGTGGT+CGG - chr7_1:77730970-77730989 Msa1040380:intron 30.0%
AATGTGTATTTCCATACAGT+GGG + chr7_1:77731223-77731242 None:intergenic 30.0%
AAATGTGTATTTCCATACAG+TGG + chr7_1:77731224-77731243 None:intergenic 30.0%
!! ACCTCTAAAACTTCTATTGT+AGG - chr7_1:77731252-77731271 Msa1040380:intron 30.0%
TACACTTATTCTTTACGCTA+AGG - chr7_1:77731343-77731362 Msa1040380:intron 30.0%
ACACTTATTCTTTACGCTAA+GGG - chr7_1:77731344-77731363 Msa1040380:intron 30.0%
!! ATGATAATAAACTTTGGGAC+TGG + chr7_1:77731509-77731528 None:intergenic 30.0%
! TGACATCAAGATCCTTTTAA+TGG + chr7_1:77731693-77731712 None:intergenic 30.0%
!! AAGATGATCAGTAACTTGTT+TGG - chr7_1:77731758-77731777 Msa1040380:intron 30.0%
!! ATCAGTAACTTGTTTGGATT+CGG - chr7_1:77731764-77731783 Msa1040380:intron 30.0%
TTCTAACACTACTTGGATAA+GGG + chr7_1:77731823-77731842 None:intergenic 30.0%
ATTCTAACACTACTTGGATA+AGG + chr7_1:77731824-77731843 None:intergenic 30.0%
CAATGAATTCTAACACTACT+TGG + chr7_1:77731830-77731849 None:intergenic 30.0%
ATTCATTGCACGTTATTGTT+AGG - chr7_1:77731842-77731861 Msa1040380:intron 30.0%
AAGCTTGAATGTTGAAAAGA+CGG + chr7_1:77731962-77731981 None:intergenic 30.0%
! TTATTCTCAAGTTGCTATCA+GGG - chr7_1:77732007-77732026 Msa1040380:CDS 30.0%
TCCTCATAGTTCTTTCTATT+TGG - chr7_1:77732192-77732211 Msa1040380:intron 30.0%
ACCAAATAGAAAGAACTATG+AGG + chr7_1:77732196-77732215 None:intergenic 30.0%
GGATAATCAAACAACACAAA+TGG + chr7_1:77732369-77732388 None:intergenic 30.0%
TTGGATGACCAAATCAATTA+TGG + chr7_1:77732401-77732420 None:intergenic 30.0%
TGATGACTTTCACAAACAAA+AGG + chr7_1:77732458-77732477 None:intergenic 30.0%
AACCTTGAGAAATAGAAAAC+AGG + chr7_1:77732505-77732524 None:intergenic 30.0%
AAAGGAAGTTGACATTCATA+TGG - chr7_1:77732579-77732598 Msa1040380:intron 30.0%
! GTTTGTTAATTGCTTTGTAG+TGG - chr7_1:77732638-77732657 Msa1040380:intron 30.0%
TAACCAACAAGCTAACATAT+AGG + chr7_1:77732694-77732713 None:intergenic 30.0%
!!! GCATTTGCTTTTTACACTAA+AGG - chr7_1:77732720-77732739 Msa1040380:intron 30.0%
TGTATGGAAATGCATAAAAG+TGG + chr7_1:77732893-77732912 None:intergenic 30.0%
TTTCCATACAAAGAATATGC+TGG - chr7_1:77732903-77732922 Msa1040380:CDS 30.0%
GGAAGAAGAAGAAAAAACAA+AGG + chr7_1:77733086-77733105 None:intergenic 30.0%
AGCAGTATCAGGTTATTAAT+TGG + chr7_1:77733107-77733126 None:intergenic 30.0%
AGAACATAATCATGATACGT+TGG + chr7_1:77733150-77733169 None:intergenic 30.0%
TAAGCATATAACTGGAAACA+AGG - chr7_1:77733263-77733282 Msa1040380:intron 30.0%
AAGTGTCAAATCATATGGTA+TGG + chr7_1:77733418-77733437 None:intergenic 30.0%
! TGATTTGACACTTATTGACT+TGG - chr7_1:77733425-77733444 Msa1040380:intron 30.0%
!! TTTTTGCTATAGAGAGGATA+TGG - chr7_1:77733544-77733563 Msa1040380:CDS 30.0%
!! TTTTGCTATAGAGAGGATAT+GGG - chr7_1:77733545-77733564 Msa1040380:CDS 30.0%
! GCATCTAACAGTTTTTCTTT+TGG - chr7_1:77733567-77733586 Msa1040380:CDS 30.0%
!! TAACAGTTTTTCTTTTGGCT+CGG - chr7_1:77733572-77733591 Msa1040380:CDS 30.0%
TATCTACAATTGCACATAAG+TGG + chr7_1:77733790-77733809 None:intergenic 30.0%
CAGTCAAATTTCTTGAGTAT+CGG + chr7_1:77733851-77733870 None:intergenic 30.0%
TCTGAAAACCGAAAAGTAGA+AGG - chr7_1:77729079-77729098 Msa1040380:three_prime_UTR 35.0%
!! TTTCAATTTTGGGTCATCGT+TGG - chr7_1:77729142-77729161 Msa1040380:three_prime_UTR 35.0%
ATCTCAATCCTCACCAATTA+GGG - chr7_1:77729298-77729317 Msa1040380:three_prime_UTR 35.0%
ACCAATTAGGGTTGAGATAA+TGG - chr7_1:77729310-77729329 Msa1040380:three_prime_UTR 35.0%
CCAATTAGGGTTGAGATAAT+GGG - chr7_1:77729311-77729330 Msa1040380:three_prime_UTR 35.0%
CAATTAGGGTTGAGATAATG+GGG - chr7_1:77729312-77729331 Msa1040380:three_prime_UTR 35.0%
! AATTAGGGTTGAGATAATGG+GGG - chr7_1:77729313-77729332 Msa1040380:three_prime_UTR 35.0%
!! ACAATGAAGCGTTGATAAGT+AGG + chr7_1:77729443-77729462 None:intergenic 35.0%
ACGTGGATAACAAACATTGA+AGG + chr7_1:77729511-77729530 None:intergenic 35.0%
!!! TCCCTACTAGGTTTTTTCAT+TGG - chr7_1:77729554-77729573 Msa1040380:CDS 35.0%
CACCAATGAAAAAACCTAGT+AGG + chr7_1:77729559-77729578 None:intergenic 35.0%
!!! AGTTGAAAGGGTTTTGAACT+TGG - chr7_1:77729690-77729709 Msa1040380:CDS 35.0%
TTGAACTTGGAAGGTCAAAA+TGG - chr7_1:77729703-77729722 Msa1040380:CDS 35.0%
TGAACTTGGAAGGTCAAAAT+GGG - chr7_1:77729704-77729723 Msa1040380:CDS 35.0%
TTAAAGTAGATTGAAAGCCG+CGG + chr7_1:77730037-77730056 None:intergenic 35.0%
!!! TTTTTTTCCTCCCTGTTTCA+TGG - chr7_1:77730153-77730172 Msa1040380:CDS 35.0%
ATACGATGAAGTCTCTAGTA+TGG - chr7_1:77730322-77730341 Msa1040380:intron 35.0%
TAGATAGAGTCCATGTTTGT+AGG - chr7_1:77730355-77730374 Msa1040380:intron 35.0%
!! ATCTAGTCCTTCTAGTTCAT+TGG - chr7_1:77730389-77730408 Msa1040380:intron 35.0%
! TTTTCTTTTGCTAGAGGTAG+AGG - chr7_1:77730583-77730602 Msa1040380:intron 35.0%
TGTTATAAGTTTGAGTGGTC+GGG - chr7_1:77730971-77730990 Msa1040380:intron 35.0%
!! GCCTACAATAGAAGTTTTAG+AGG + chr7_1:77731256-77731275 None:intergenic 35.0%
CACTTATTCTTTACGCTAAG+GGG - chr7_1:77731345-77731364 Msa1040380:intron 35.0%
AGATACAAGTATGACTGCTT+TGG + chr7_1:77731395-77731414 None:intergenic 35.0%
CTGTTGTATTCCTTACTTAC+TGG - chr7_1:77731534-77731553 Msa1040380:CDS 35.0%
AAATTACCTGCCAGTAAGTA+AGG + chr7_1:77731547-77731566 None:intergenic 35.0%
TATTGTGATGCTAGATGAAC+AGG - chr7_1:77731633-77731652 Msa1040380:CDS 35.0%
TGCACGTTATTGTTAGGAAT+TGG - chr7_1:77731848-77731867 Msa1040380:intron 35.0%
! GTTATTCTCAAGTTGCTATC+AGG - chr7_1:77732006-77732025 Msa1040380:CDS 35.0%
TGGAAGTGAAAATGAGAAGT+GGG + chr7_1:77732043-77732062 None:intergenic 35.0%
ATGGAAGTGAAAATGAGAAG+TGG + chr7_1:77732044-77732063 None:intergenic 35.0%
!! TAACGGGCTAAACTATACAA+TGG + chr7_1:77732063-77732082 None:intergenic 35.0%
TTGTATAGTTTAGCCCGTTA+AGG - chr7_1:77732063-77732082 Msa1040380:intron 35.0%
AAAATAGATGTAGTGTGTGC+TGG + chr7_1:77732154-77732173 None:intergenic 35.0%
! AGCACACACTACATCTATTT+TGG - chr7_1:77732153-77732172 Msa1040380:intron 35.0%
AAGAACTATGAGGAATGAGA+AGG + chr7_1:77732186-77732205 None:intergenic 35.0%
GTCATTGAAAGATTCAGAGT+TGG + chr7_1:77732236-77732255 None:intergenic 35.0%
CACAAACAAAAGGATCATCA+AGG + chr7_1:77732448-77732467 None:intergenic 35.0%
CTTGAGAAATAGAAAACAGG+AGG + chr7_1:77732502-77732521 None:intergenic 35.0%
!! CTCCTGTTTTCTATTTCTCA+AGG - chr7_1:77732500-77732519 Msa1040380:intron 35.0%
!! TAGCCTATATGTTAGCTTGT+TGG - chr7_1:77732688-77732707 Msa1040380:intron 35.0%
GAATATGCTGGAGCTAATAT+AGG - chr7_1:77732915-77732934 Msa1040380:CDS 35.0%
GTTCCTTGTGTTGAAATTTC+TGG - chr7_1:77733060-77733079 Msa1040380:intron 35.0%
TTCTTTACAACCACAGTGAA+GGG - chr7_1:77733166-77733185 Msa1040380:intron 35.0%
TTCTCACATTATCCATCTCT+GGG + chr7_1:77733239-77733258 None:intergenic 35.0%
TTTCTCACATTATCCATCTC+TGG + chr7_1:77733240-77733259 None:intergenic 35.0%
AATCAAATCTTCCTTGCTTG+TGG - chr7_1:77733374-77733393 Msa1040380:intron 35.0%
AATCTGCTTAAATCCTTTCC+TGG + chr7_1:77733632-77733651 None:intergenic 35.0%
GAAGACCAAGACAAATAACA+TGG + chr7_1:77733734-77733753 None:intergenic 35.0%
CATATTGTAATTGTCTCCGT+TGG - chr7_1:77733753-77733772 Msa1040380:five_prime_UTR 35.0%
ACAATTGCACATAAGTGGAT+GGG + chr7_1:77733785-77733804 None:intergenic 35.0%
TACAATTGCACATAAGTGGA+TGG + chr7_1:77733786-77733805 None:intergenic 35.0%
TTCCATGCATTATGTAGAGT+TGG - chr7_1:77733893-77733912 Msa1040380:five_prime_UTR 35.0%
TCCATGCATTATGTAGAGTT+GGG - chr7_1:77733894-77733913 Msa1040380:five_prime_UTR 35.0%
ATGTAGAGTTGGGTTCATAT+TGG - chr7_1:77733904-77733923 Msa1040380:five_prime_UTR 35.0%
!! TTGTGCTGCCTTCTACTTTT+CGG + chr7_1:77729090-77729109 None:intergenic 40.0%
ACAATAATGGCGACTGTTGT+TGG + chr7_1:77729193-77729212 None:intergenic 40.0%
GATCTCAATCCTCACCAATT+AGG - chr7_1:77729297-77729316 Msa1040380:three_prime_UTR 40.0%
TATCTCAACCCTAATTGGTG+AGG + chr7_1:77729309-77729328 None:intergenic 40.0%
CCCATTATCTCAACCCTAAT+TGG + chr7_1:77729314-77729333 None:intergenic 40.0%
! CATTGTTCGCATCGTTTTCA+TGG - chr7_1:77729457-77729476 Msa1040380:CDS 40.0%
! ACAGTGACACATTTAGGGTT+AGG + chr7_1:77729636-77729655 None:intergenic 40.0%
!!! GAAAGGGTTTTGAACTTGGA+AGG - chr7_1:77729694-77729713 Msa1040380:CDS 40.0%
GAACTTGGAAGGTCAAAATG+GGG - chr7_1:77729705-77729724 Msa1040380:CDS 40.0%
AATGGGTAATTCAGTCAGTG+AGG + chr7_1:77729799-77729818 None:intergenic 40.0%
TGCACCAACAGTCTCTTATT+AGG - chr7_1:77729837-77729856 Msa1040380:intron 40.0%
AGGACCTAATAAGAGACTGT+TGG + chr7_1:77729844-77729863 None:intergenic 40.0%
AGGACAGACAACAATTGTCA+GGG + chr7_1:77730798-77730817 None:intergenic 40.0%
ACTGTTTCAGCTATGAAGCT+TGG - chr7_1:77730892-77730911 Msa1040380:intron 40.0%
CTGTTTCAGCTATGAAGCTT+GGG - chr7_1:77730893-77730912 Msa1040380:intron 40.0%
TTGCTTTCCTCCTATACCTT+TGG - chr7_1:77731025-77731044 Msa1040380:intron 40.0%
TTTCCTCCTATACCTTTGGA+TGG - chr7_1:77731029-77731048 Msa1040380:intron 40.0%
TTCCTCCTATACCTTTGGAT+GGG - chr7_1:77731030-77731049 Msa1040380:intron 40.0%
! ACTTACCCATCCAAAGGTAT+AGG + chr7_1:77731038-77731057 None:intergenic 40.0%
ATGCAAACTTACCCATCCAA+AGG + chr7_1:77731044-77731063 None:intergenic 40.0%
AAAGTTGTCGTGCCTGAAAA+TGG - chr7_1:77731085-77731104 Msa1040380:intron 40.0%
ATTCAAAGGCTCAGATCTCA+AGG + chr7_1:77731120-77731139 None:intergenic 40.0%
TTCATACGTAAGTGCAAGCA+AGG - chr7_1:77731278-77731297 Msa1040380:intron 40.0%
TCATACGTAAGTGCAAGCAA+GGG - chr7_1:77731279-77731298 Msa1040380:intron 40.0%
TTACGCTAAGGGGAAATACA+AGG - chr7_1:77731355-77731374 Msa1040380:intron 40.0%
CTAAGGGGAAATACAAGGAT+GGG - chr7_1:77731360-77731379 Msa1040380:intron 40.0%
!! TGCTCTTGCATTGTTTTACG+TGG - chr7_1:77731454-77731473 Msa1040380:CDS 40.0%
!! ATTGTTTTACGTGGCATGCA+AGG - chr7_1:77731463-77731482 Msa1040380:CDS 40.0%
!! AACTTTGGGACTGGATTGAA+TGG + chr7_1:77731500-77731519 None:intergenic 40.0%
TGTATTCCTTACTTACTGGC+AGG - chr7_1:77731538-77731557 Msa1040380:CDS 40.0%
AGAACAGAGCAAAGCCTTAA+CGG + chr7_1:77732080-77732099 None:intergenic 40.0%
!! ACAAGGGAGTACTAAACAGA+TGG - chr7_1:77732292-77732311 Msa1040380:intron 40.0%
TCAAACAACACAAATGGTGC+AGG + chr7_1:77732363-77732382 None:intergenic 40.0%
GTTCTTTCTTGCTGCAAAGT+CGG - chr7_1:77732788-77732807 Msa1040380:intron 40.0%
TTCTTTCTTGCTGCAAAGTC+GGG - chr7_1:77732789-77732808 Msa1040380:intron 40.0%
GCTCCAGCATATTCTTTGTA+TGG + chr7_1:77732909-77732928 None:intergenic 40.0%
TATGCTGGAGCTAATATAGG+TGG - chr7_1:77732918-77732937 Msa1040380:CDS 40.0%
CATATAAAGTGAGACTCACC+TGG + chr7_1:77733013-77733032 None:intergenic 40.0%
AGGCCAGAAATTTCAACACA+AGG + chr7_1:77733066-77733085 None:intergenic 40.0%
CCACAAATTTGAGCAGTATC+AGG + chr7_1:77733118-77733137 None:intergenic 40.0%
CCTGATACTGCTCAAATTTG+TGG - chr7_1:77733115-77733134 Msa1040380:intron 40.0%
GTTCTTTACAACCACAGTGA+AGG - chr7_1:77733165-77733184 Msa1040380:intron 40.0%
TCTTTACAACCACAGTGAAG+GGG - chr7_1:77733167-77733186 Msa1040380:intron 40.0%
! AAGAAGGAACAAGGAAGTAC+AGG - chr7_1:77733190-77733209 Msa1040380:intron 40.0%
AGTAGTACTCCCTCAAATTC+TGG - chr7_1:77733321-77733340 Msa1040380:intron 40.0%
ATATGGTATGGACGCAGAAT+TGG + chr7_1:77733406-77733425 None:intergenic 40.0%
GATAAGGAACATTCAGAGCT+AGG - chr7_1:77733506-77733525 Msa1040380:CDS 40.0%
GGTTTCTTACATTCCAGGAA+AGG - chr7_1:77733616-77733635 Msa1040380:exon 40.0%
!! TTTTGTTTGCTTGGGAATGG+AGG + chr7_1:77733707-77733726 None:intergenic 40.0%
CCATTCCCAAGCAAACAAAA+CGG - chr7_1:77733707-77733726 Msa1040380:five_prime_UTR 40.0%
!!! ATGGACCGTTTTGTTTGCTT+GGG + chr7_1:77733715-77733734 None:intergenic 40.0%
! ACGGTCCATGTTATTTGTCT+TGG - chr7_1:77733726-77733745 Msa1040380:five_prime_UTR 40.0%
ACCCAACTCTACATAATGCA+TGG + chr7_1:77733898-77733917 None:intergenic 40.0%
ACACACAGACACACACGTTT+GGG - chr7_1:77729037-77729056 Msa1040380:three_prime_UTR 45.0%
!! TGTTGTTGGCTTCGGTAACA+AGG + chr7_1:77729179-77729198 None:intergenic 45.0%
GATCTTCTCGGATCTGATTC+TGG - chr7_1:77729252-77729271 Msa1040380:three_prime_UTR 45.0%
! ATCGCTTTCTTTTGCACCGT+CGG - chr7_1:77729362-77729381 Msa1040380:three_prime_UTR 45.0%
! TCGCATCGTTTTCATGGTTC+CGG - chr7_1:77729463-77729482 Msa1040380:CDS 45.0%
CTGTTGGTGCAGAACCAAAT+AGG + chr7_1:77729828-77729847 None:intergenic 45.0%
!!! TCTTGTCCCTTGTTTTACCG+CGG - chr7_1:77730017-77730036 Msa1040380:CDS 45.0%
TGAAAGCCGCGGTAAAACAA+GGG + chr7_1:77730026-77730045 None:intergenic 45.0%
TTGAAAGCCGCGGTAAAACA+AGG + chr7_1:77730027-77730046 None:intergenic 45.0%
AGTTGAACCATGAAACAGGG+AGG + chr7_1:77730163-77730182 None:intergenic 45.0%
TTCCCACTCTTGTGATTGCA+CGG + chr7_1:77730514-77730533 None:intergenic 45.0%
! CTTATCCCACTAAGTGGGTT+CGG + chr7_1:77730712-77730731 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr7_1:77730717-77730736 None:intergenic 45.0%
GTCAGGGTGAACTTCGATTA+CGG + chr7_1:77730782-77730801 None:intergenic 45.0%
CAGGACAGACAACAATTGTC+AGG + chr7_1:77730799-77730818 None:intergenic 45.0%
!! TCCTGTCACTTTGTCTAGCA+TGG - chr7_1:77730928-77730947 Msa1040380:intron 45.0%
!! CCTGTCACTTTGTCTAGCAT+GGG - chr7_1:77730929-77730948 Msa1040380:intron 45.0%
TCACTTTGTCTAGCATGGGT+TGG - chr7_1:77730933-77730952 Msa1040380:intron 45.0%
CAAGTCATCAGACAGACTGA+CGG + chr7_1:77731005-77731024 None:intergenic 45.0%
! TACCCATCCAAAGGTATAGG+AGG + chr7_1:77731035-77731054 None:intergenic 45.0%
GCTAAGGGGAAATACAAGGA+TGG - chr7_1:77731359-77731378 Msa1040380:intron 45.0%
! TTCTCAAGTTGCTATCAGGG+TGG - chr7_1:77732010-77732029 Msa1040380:CDS 45.0%
! TCTCAAGTTGCTATCAGGGT+GGG - chr7_1:77732011-77732030 Msa1040380:CDS 45.0%
GAACAGAGCAAAGCCTTAAC+GGG + chr7_1:77732079-77732098 None:intergenic 45.0%
ATGTAGTGTGTGCTGGAATG+AGG + chr7_1:77732147-77732166 None:intergenic 45.0%
TGAGATGCTTATTGCTGCAG+TGG - chr7_1:77732866-77732885 Msa1040380:intron 45.0%
GAGATGCTTATTGCTGCAGT+GGG - chr7_1:77732867-77732886 Msa1040380:intron 45.0%
TCAACTTCAAAGCATGCCCA+AGG + chr7_1:77732965-77732984 None:intergenic 45.0%
TTACCATGATACAGTCCACC+AGG - chr7_1:77732992-77733011 Msa1040380:intron 45.0%
ATAAAGTGAGACTCACCTGG+TGG + chr7_1:77733010-77733029 None:intergenic 45.0%
TCACGAACGTTTGTTCCGAT+TGG - chr7_1:77733213-77733232 Msa1040380:intron 45.0%
TTATCCATCTCTGGGCCAAT+CGG + chr7_1:77733231-77733250 None:intergenic 45.0%
GGCAGTGAACCAGAATTTGA+GGG + chr7_1:77733333-77733352 None:intergenic 45.0%
AGGCAGTGAACCAGAATTTG+AGG + chr7_1:77733334-77733353 None:intergenic 45.0%
! GCATCAGAGTTTGAAGCATC+AGG + chr7_1:77733354-77733373 None:intergenic 45.0%
ATTGGACACATCCACAAGCA+AGG + chr7_1:77733388-77733407 None:intergenic 45.0%
AGGAACTTCTTCTGGGTAAC+TGG + chr7_1:77733457-77733476 None:intergenic 45.0%
CCTTATCGATCACCTAAGAC+CGG + chr7_1:77733493-77733512 None:intergenic 45.0%
AGGAACATTCAGAGCTAGGT+TGG - chr7_1:77733510-77733529 Msa1040380:CDS 45.0%
!! ACATTCAGAGCTAGGTTGGT+TGG - chr7_1:77733514-77733533 Msa1040380:CDS 45.0%
!! CATTCAGAGCTAGGTTGGTT+GGG - chr7_1:77733515-77733534 Msa1040380:CDS 45.0%
AGAGAACTATGTCTCAAGCG+TGG - chr7_1:77733595-77733614 Msa1040380:CDS 45.0%
AGCGTGGTTTCTTACATTCC+AGG - chr7_1:77733611-77733630 Msa1040380:exon 45.0%
!!! CCGTTTTGTTTGCTTGGGAA+TGG + chr7_1:77733710-77733729 None:intergenic 45.0%
!!! CATGGACCGTTTTGTTTGCT+TGG + chr7_1:77733716-77733735 None:intergenic 45.0%
!!! TTTTAAAAAAAAAAAAAAAC+AGG + chr7_1:77731167-77731186 None:intergenic 5.0%
!!! AATAAAAACTAATTTTTATA+TGG - chr7_1:77731718-77731737 Msa1040380:intron 5.0%
GTCTGTGTGTGTGTGGGAAT+TGG + chr7_1:77729027-77729046 None:intergenic 50.0%
GTGTGTGTCTGTGTGTGTGT+GGG + chr7_1:77729033-77729052 None:intergenic 50.0%
CACACACAGACACACACGTT+TGG - chr7_1:77729036-77729055 Msa1040380:three_prime_UTR 50.0%
!! ATGGCGACTGTTGTTGGCTT+CGG + chr7_1:77729187-77729206 None:intergenic 50.0%
! TCTCGGATCTGATTCTGGCT+AGG - chr7_1:77729257-77729276 Msa1040380:three_prime_UTR 50.0%
! CTCGGATCTGATTCTGGCTA+GGG - chr7_1:77729258-77729277 Msa1040380:three_prime_UTR 50.0%
GGAAGGTCAAAATGGGGTGA+AGG - chr7_1:77729711-77729730 Msa1040380:CDS 50.0%
TACCCGTGCAATCACAAGAG+TGG - chr7_1:77730508-77730527 Msa1040380:intron 50.0%
ACCCGTGCAATCACAAGAGT+GGG - chr7_1:77730509-77730528 Msa1040380:intron 50.0%
TCCCACTCTTGTGATTGCAC+GGG + chr7_1:77730513-77730532 None:intergenic 50.0%
GTGCAATCACAAGAGTGGGA+AGG - chr7_1:77730513-77730532 Msa1040380:intron 50.0%
CGAACCCACTTAGTGGGATA+AGG - chr7_1:77730710-77730729 Msa1040380:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr7_1:77730718-77730737 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr7_1:77730715-77730734 Msa1040380:intron 50.0%
! GGGATAAGGCTTGGTTGTTG+TGG - chr7_1:77730724-77730743 Msa1040380:intron 50.0%
CCCATGCTAGACAAAGTGAC+AGG + chr7_1:77730932-77730951 None:intergenic 50.0%
!! CTTTGTCTAGCATGGGTTGG+TGG - chr7_1:77730936-77730955 Msa1040380:intron 50.0%
AGAGGCTAGGATGACACATG+TGG - chr7_1:77731197-77731216 Msa1040380:intron 50.0%
TGTGTGCTGGAATGAGGACA+CGG + chr7_1:77732141-77732160 None:intergenic 50.0%
TGCAAAGTCGGGATTCATCC+AGG - chr7_1:77732800-77732819 Msa1040380:intron 50.0%
GCTAATATAGGTGGATCCCG+TGG - chr7_1:77732927-77732946 Msa1040380:CDS 50.0%
!! TCACCTGGTGGACTGTATCA+TGG + chr7_1:77732998-77733017 None:intergenic 50.0%
AACCACAGTGAAGGGGAAGA+AGG - chr7_1:77733174-77733193 Msa1040380:intron 50.0%
TTCCTTCTTCCCCTTCACTG+TGG + chr7_1:77733179-77733198 None:intergenic 50.0%
GTGAAGGGGAAGAAGGAACA+AGG - chr7_1:77733181-77733200 Msa1040380:intron 50.0%
CTGCTGCAGGAACTTCTTCT+GGG + chr7_1:77733464-77733483 None:intergenic 50.0%
TCTGCTGCAGGAACTTCTTC+TGG + chr7_1:77733465-77733484 None:intergenic 50.0%
GTTCCTGCAGCAGATAAAGC+CGG - chr7_1:77733471-77733490 Msa1040380:intron 50.0%
CAGCAGATAAAGCCGGTCTT+AGG - chr7_1:77733478-77733497 Msa1040380:CDS 50.0%
CCGGTCTTAGGTGATCGATA+AGG - chr7_1:77733490-77733509 Msa1040380:CDS 50.0%
TTGGGAATGGAGGCTGACAA+CGG + chr7_1:77733697-77733716 None:intergenic 50.0%
AGTGGATGGGACACAACCAA+CGG + chr7_1:77733772-77733791 None:intergenic 50.0%
CGTGTGTGTCTGTGTGTGTG+TGG + chr7_1:77729034-77729053 None:intergenic 55.0%
! ACGTTTGGGTTCTCGCGTTG+TGG - chr7_1:77729051-77729070 Msa1040380:three_prime_UTR 55.0%
! TTTGGGTTCTCGCGTTGTGG+TGG - chr7_1:77729054-77729073 Msa1040380:three_prime_UTR 55.0%
AGCCAAAGCGATTGCACCGA+CGG + chr7_1:77729381-77729400 None:intergenic 55.0%
! ACTAAGTGGGTTCGGCTGCA+TGG + chr7_1:77730704-77730723 None:intergenic 55.0%
ATGCAGCCGAACCCACTTAG+TGG - chr7_1:77730703-77730722 Msa1040380:intron 55.0%
TGCAGCCGAACCCACTTAGT+GGG - chr7_1:77730704-77730723 Msa1040380:intron 55.0%
GACACATGTGGCCCACTGTA+TGG - chr7_1:77731209-77731228 Msa1040380:intron 55.0%
AAGCAGCTTCGTCAGCATCC+TGG + chr7_1:77732821-77732840 None:intergenic 55.0%
AAGGCTAGCGGTCAAACCAC+GGG + chr7_1:77732946-77732965 None:intergenic 55.0%
CAAGGCTAGCGGTCAAACCA+CGG + chr7_1:77732947-77732966 None:intergenic 55.0%
!! GTGGTTTGACCGCTAGCCTT+GGG - chr7_1:77732946-77732965 Msa1040380:intron 55.0%
CAAAGCATGCCCAAGGCTAG+CGG + chr7_1:77732958-77732977 None:intergenic 55.0%
! TGTTCCGATTGGCCCAGAGA+TGG - chr7_1:77733224-77733243 Msa1040380:intron 55.0%
! AGACCGGCTTTATCTGCTGC+AGG + chr7_1:77733477-77733496 None:intergenic 55.0%
TGGGAATGGAGGCTGACAAC+GGG + chr7_1:77733696-77733715 None:intergenic 55.0%
CACCGTCGGTGCAATCGCTT+TGG - chr7_1:77729376-77729395 Msa1040380:three_prime_UTR 60.0%
!! CTAGCATGGGTTGGTGGTCC+TGG - chr7_1:77730942-77730961 Msa1040380:intron 60.0%
! CGTGGTTTGACCGCTAGCCT+TGG - chr7_1:77732945-77732964 Msa1040380:intron 60.0%
GGGAATGGAGGCTGACAACG+GGG + chr7_1:77733695-77733714 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 77728987 77733971 77728987 ID=Msa1040380;Name=Msa1040380
chr7_1 mRNA 77728987 77733971 77728987 ID=Msa1040380-mRNA-1;Parent=Msa1040380;Name=Msa1040380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=342|1|1|1|1|1|6|468|420
chr7_1 exon 77728987 77729817 77728987 ID=Msa1040380-mRNA-1:exon:20544;Parent=Msa1040380-mRNA-1
chr7_1 exon 77729945 77730178 77729945 ID=Msa1040380-mRNA-1:exon:20543;Parent=Msa1040380-mRNA-1
chr7_1 exon 77731399 77731684 77731399 ID=Msa1040380-mRNA-1:exon:20542;Parent=Msa1040380-mRNA-1
chr7_1 exon 77731907 77732056 77731907 ID=Msa1040380-mRNA-1:exon:20541;Parent=Msa1040380-mRNA-1
chr7_1 exon 77732887 77732960 77732887 ID=Msa1040380-mRNA-1:exon:20540;Parent=Msa1040380-mRNA-1
chr7_1 exon 77733474 77733971 77733474 ID=Msa1040380-mRNA-1:exon:20539;Parent=Msa1040380-mRNA-1
chr7_1 five_prime_UTR 77733630 77733971 77733630 ID=Msa1040380-mRNA-1:five_prime_utr;Parent=Msa1040380-mRNA-1
chr7_1 CDS 77733474 77733629 77733474 ID=Msa1040380-mRNA-1:cds;Parent=Msa1040380-mRNA-1
chr7_1 CDS 77732887 77732960 77732887 ID=Msa1040380-mRNA-1:cds;Parent=Msa1040380-mRNA-1
chr7_1 CDS 77731907 77732056 77731907 ID=Msa1040380-mRNA-1:cds;Parent=Msa1040380-mRNA-1
chr7_1 CDS 77731399 77731684 77731399 ID=Msa1040380-mRNA-1:cds;Parent=Msa1040380-mRNA-1
chr7_1 CDS 77729945 77730178 77729945 ID=Msa1040380-mRNA-1:cds;Parent=Msa1040380-mRNA-1
chr7_1 CDS 77729455 77729817 77729455 ID=Msa1040380-mRNA-1:cds;Parent=Msa1040380-mRNA-1
chr7_1 three_prime_UTR 77728987 77729454 77728987 ID=Msa1040380-mRNA-1:three_prime_utr;Parent=Msa1040380-mRNA-1
Gene Sequence

>Msa1040380

ATGGGGGTACTGCTTCCGCTTTTTTTCTATGTTATCGCTTTCTTTTGCACCGTCGGTGCAATCGCTTTGGCTATTCTTCACATTTACAGACACCTTCTTAATTATACTGAACCTACTTATCAACGCTTCATTGTTCGCATCGTTTTCATGGTTCCGGTTTATGCACTGATGTCTTTCTTGTCCCTTGTTTTACCGCGGCTTTCAATCTACTTTAATTCAATCCGTGAAGTCTATGAAGCTTGGGTCATTTACAATTTCCTGTCACTTTGTCTAGCATGGGTTGGTGGTCCTGGATCAGTTGTTATAAGTTTGAGTGGTCGGGTTCTGAAGCCGTCAGTCTGTCTGATGACTTGTTGCTTTCCTCCTATACCTTTGGATGGGCGTTTCATACGTAAGTGCAAGCAAGGGTGTTTGCAGTTTGTGATTTTGAAGCCCATTTTAGTTGTTGTTACACTTATTCTTTACGCTAAGGGGAAATACAAGGATGGGAATTTCAATCCAAAGCAGTCATACTTGTATCTCACAATCATCTATACATTCTCATATACAATGGCTCTCTATGCTCTTGCATTGTTTTACGTGGCATGCAAGGATCTGCTTCAGCCATTCAATCCAGTCCCAAAGTTTATTATCATAAAGTCTGTTGTATTCCTTACTTACTGGCAGGGGGTGCTGTTCTTTCTTGCTGCAAAGTCGGGATTCATCCAGGATGCTGACGAAGCTGCTTTACTTCAAAATTTTATCATTTGTGTTGAGATGCTTATTGCTGCAGTGGGCCACTTTTATGCATTTCCATACAAAGAATATGCTGGAGCTAATATAGGTGGATCCCGTGGTTTGACCGCTAGCCTTGGGCATGCTTTGAAGTTGAATGACTTTTACCATGATACAGTCCACCAGTTCGCACCAACGTATCATGATTATGTTCTTTACAACCACAGTGAAGGGGAAGAAGGAACAAGGAAGTACAGGTCACGAACGTTTGTTCCGATTGGCCCAGAGATGGATAATGTGAGAAAAAATAAGCATATAACTGGAAACAAGGTAGATGACATACAACTAACAAGCTTCTCTTCTGATAGTAGTACTCCCTCAAATTCTGGTTCACTGCCTGATGCTTCAAACTCTGATGCAATCAAATCTTCCTTGCTTGTGGATGTGTCCAATTCTGCGTCCATACCATATGATTTGACACTTATTGACTTGGATGTATCCAGTTACCCAGAAGAAGTTCCTGCAGCAGATAAAGCCGGTCTTAGGTGA
Protein sequence

>Msa1040380

MGVLLPLFFYVIAFFCTVGAIALAILHIYRHLLNYTEPTYQRFIVRIVFMVPVYALMSFLSLVLPRLSIYFNSIREVYEAWVIYNFLSLCLAWVGGPGSVVISLSGRVLKPSVCLMTCCFPPIPLDGRFIRKCKQGCLQFVILKPILVVVTLILYAKGKYKDGNFNPKQSYLYLTIIYTFSYTMALYALALFYVACKDLLQPFNPVPKFIIIKSVVFLTYWQGVLFFLAAKSGFIQDADEAALLQNFIICVEMLIAAVGHFYAFPYKEYAGANIGGSRGLTASLGHALKLNDFYHDTVHQFAPTYHDYVLYNHSEGEEGTRKYRSRTFVPIGPEMDNVRKNKHITGNKVDDIQLTSFSSDSSTPSNSGSLPDASNSDAIKSSLLVDVSNSASIPYDLTLIDLDVSSYPEEVPAADKAGLR*