AlfalfaGEDB | Msa0040780

M. sativa cultivar zhongmu-4 / Msa0040780

KEGG: K03146
GO: -
PFAM: PF01946.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0040780	sp\|F6H7K5\|THI42_VITVI	81.564	358	54	5	1	349	1	355	0.0	583

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005690	Msa0040780	0.804855	1.767884e-49	-8.615850e-47
Msa0012380	Msa0040780	0.813929	1.995696e-51	-8.615850e-47
Msa0040780	Msa0072830	0.858360	8.692017e-63	-8.615850e-47
Msa0040780	Msa0072860	0.852130	5.647844e-61	-8.615850e-47
Msa0040780	Msa0087130	0.833027	6.748682e-56	-8.615850e-47
Msa0040780	Msa0091470	0.839735	1.326142e-57	-8.615850e-47
Msa0040780	Msa0096510	0.805637	1.212521e-49	-8.615850e-47
Msa0040780	Msa0113640	0.809361	1.965500e-50	-8.615850e-47
Msa0040780	Msa0116200	0.812899	3.361118e-51	-8.615850e-47
Msa0040780	Msa0120320	0.802477	5.507624e-49	-8.615850e-47
Msa0040780	Msa0130070	0.847149	1.388525e-59	-8.615850e-47
Msa0040780	Msa0154240	0.831437	1.669845e-55	-8.615850e-47
Msa0040780	Msa0180100	0.813433	2.566234e-51	-8.615850e-47
Msa0040780	Msa0184510	0.827038	1.951107e-54	-8.615850e-47
Msa0040780	Msa0196630	0.816763	4.676627e-52	-8.615850e-47
Msa0040780	Msa0270840	0.801309	9.566881e-49	-8.615850e-47
Msa0040780	Msa0315010	0.802914	4.474530e-49	-8.615850e-47
Msa0040780	Msa0330770	0.805469	1.315145e-49	-8.615850e-47
Msa0040780	Msa0349220	0.814283	1.666862e-51	-8.615850e-47
Msa0040780	Msa0367590	0.817106	3.915887e-52	-8.615850e-47
Msa0040780	Msa0387970	0.861502	9.811058e-64	-8.615850e-47
Msa0040780	Msa0392540	0.831263	1.843431e-55	-8.615850e-47
Msa0040780	Msa0425320	0.807032	6.160812e-50	-8.615850e-47
Msa0040780	Msa0440310	0.815922	7.210785e-52	-8.615850e-47
Msa0040780	Msa0471760	0.811720	6.079327e-51	-8.615850e-47
Msa0040780	Msa0515460	0.810069	1.384553e-50	-8.615850e-47
Msa0040780	Msa0548210	0.846200	2.521161e-59	-8.615850e-47
Msa0040780	Msa0549540	0.807835	4.162500e-50	-8.615850e-47
Msa0040780	Msa0556070	0.841900	3.588820e-58	-8.615850e-47
Msa0040780	Msa0561420	0.830797	2.398672e-55	-8.615850e-47
Msa0040780	Msa0569230	0.811681	6.197883e-51	-8.615850e-47
Msa0040780	Msa0569930	0.812607	3.894452e-51	-8.615850e-47
Msa0040780	Msa0572820	0.828174	1.041163e-54	-8.615850e-47
Msa0040780	Msa0577050	0.819119	1.372992e-52	-8.615850e-47
Msa0040780	Msa0587250	0.802913	4.476770e-49	-8.615850e-47
Msa0040780	Msa0590260	0.811138	8.132507e-51	-8.615850e-47
Msa0040780	Msa0604880	0.804230	2.387362e-49	-8.615850e-47
Msa0040780	Msa0608780	0.829526	4.899676e-55	-8.615850e-47
Msa0040780	Msa0610780	0.809644	1.709110e-50	-8.615850e-47
Msa0040780	Msa0615430	0.836185	1.085192e-56	-8.615850e-47
Msa0040780	Msa0622250	0.827566	1.457245e-54	-8.615850e-47
Msa0040780	Msa0627050	0.858136	1.012986e-62	-8.615850e-47
Msa0040780	Msa0644630	0.815594	8.534794e-52	-8.615850e-47
Msa0040780	Msa0646190	0.813380	2.636316e-51	-8.615850e-47
Msa0040780	Msa0646340	0.814241	1.703272e-51	-8.615850e-47
Msa0040780	Msa0649250	0.817165	3.799363e-52	-8.615850e-47
Msa0040780	Msa0651310	0.804099	2.541606e-49	-8.615850e-47
Msa0040780	Msa0654880	0.832439	9.445736e-56	-8.615850e-47
Msa0040780	Msa0660070	0.803937	2.746978e-49	-8.615850e-47
Msa0040780	Msa0685890	0.813264	2.794402e-51	-8.615850e-47
Msa0040780	Msa0698480	0.828456	8.902215e-55	-8.615850e-47
Msa0040780	Msa0698650	0.836604	8.488070e-57	-8.615850e-47
Msa0040780	Msa0705710	0.843747	1.158684e-58	-8.615850e-47
Msa0040780	Msa0706130	0.828211	1.019611e-54	-8.615850e-47
Msa0040780	Msa0727300	0.801011	1.101137e-48	-8.615850e-47
Msa0040780	Msa0748330	0.826420	2.739118e-54	-8.615850e-47
Msa0040780	Msa0749150	0.849015	4.239526e-60	-8.615850e-47
Msa0040780	Msa0792880	0.844718	6.356374e-59	-8.615850e-47
Msa0040780	Msa0797980	0.802564	5.285053e-49	-8.615850e-47
Msa0040780	Msa0803530	0.814648	1.383938e-51	-8.615850e-47
Msa0040780	Msa0813030	0.800248	1.575683e-48	-8.615850e-47
Msa0040780	Msa0828900	0.841259	5.295179e-58	-8.615850e-47
Msa0040780	Msa0846070	0.805384	1.370344e-49	-8.615850e-47
Msa0040780	Msa0864730	0.801094	1.058885e-48	-8.615850e-47
Msa0040780	Msa0864750	0.801869	7.347152e-49	-8.615850e-47
Msa0040780	Msa0909720	0.828514	8.618799e-55	-8.615850e-47
Msa0040780	Msa0936650	0.809155	2.176305e-50	-8.615850e-47
Msa0040780	Msa0950470	0.832529	8.974016e-56	-8.615850e-47
Msa0040780	Msa0950570	0.831977	1.229453e-55	-8.615850e-47
Msa0040780	Msa0968780	0.814729	1.328378e-51	-8.615850e-47
Msa0040780	Msa0984000	0.838663	2.515505e-57	-8.615850e-47
Msa0040780	Msa1040380	-0.806022	1.006356e-49	-8.615850e-47
Msa0040780	Msa1050540	0.800739	1.251310e-48	-8.615850e-47
Msa0040780	Msa1098340	0.837508	4.986075e-57	-8.615850e-47
Msa0040780	Msa1138440	0.826446	2.701175e-54	-8.615850e-47
Msa0040780	Msa1166960	0.814961	1.180181e-51	-8.615850e-47
Msa0040780	Msa1173380	0.804722	1.884878e-49	-8.615850e-47
Msa0040780	Msa1199670	0.805059	1.602758e-49	-8.615850e-47
Msa0040780	Msa1248220	0.817899	2.596159e-52	-8.615850e-47
Msa0040780	Msa1323260	0.817961	2.513659e-52	-8.615850e-47
Msa0040780	Msa1343450	0.818522	1.875738e-52	-8.615850e-47
Msa0040780	Msa1358340	0.834142	3.555809e-56	-8.615850e-47
Msa0040780	Msa1359890	0.833225	6.025624e-56	-8.615850e-47
Msa0040780	Msa1371060	0.827696	1.356386e-54	-8.615850e-47
Msa0040780	Msa1394900	0.808411	3.137792e-50	-8.615850e-47
Msa0040780	Msa1404690	0.813223	2.854287e-51	-8.615850e-47
Msa0040780	Msa1406020	0.862320	5.508295e-64	-8.615850e-47
Msa0040780	Msa1422150	0.806121	9.594589e-50	-8.615850e-47
Msa0040780	Msa1431240	0.804987	1.658866e-49	-8.615850e-47
Msa0040780	Msa1456620	0.850175	2.012414e-60	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0040780	MtrunA17_Chr1g0206061	99.427	349	2	0	1	349	1	349	0.0	716
Msa0040780	MtrunA17_Chr4g0041841	77.465	355	69	4	1	349	1	350	0.0	547

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0040780	AT5G54770.1	79.429	350	67	3	4	349	1	349	0.0	561

Find 121 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCAAAACATTGCTCTTATTT+TGG	0.112812	1_1:+71056085	None:intergenic
ATTGAATGTTTGAATTATTT+AGG	0.190394	1_1:-71056206	Msa0040780:three_prime_UTR
TCCATTGAAGAATGAGGATT+TGG	0.249214	1_1:+71057840	None:intergenic
ACAGAAATCCGTCGTAATAA+TGG	0.261939	1_1:-71055955	Msa0040780:three_prime_UTR
CTATGTTTGGACAAACAAAT+TGG	0.277161	1_1:-71056249	Msa0040780:three_prime_UTR
CCAAAATAAGAGCAATGTTT+TGG	0.280850	1_1:-71056085	Msa0040780:three_prime_UTR
AAGTGAACCAGAGCTTATTT+TGG	0.293889	1_1:-71056429	Msa0040780:CDS
ATTTGATTGTGAAGGAAAAC+AGG	0.301961	1_1:-71057324	Msa0040780:CDS
TTGCTGGTGTTGTTACAAAC+TGG	0.325188	1_1:-71057300	Msa0040780:CDS
GTTCCTGGTATGATTGTTAC+TGG	0.328065	1_1:-71057061	Msa0040780:CDS
TGTGGACATGATGGTCCTTT+TGG	0.329730	1_1:-71057199	Msa0040780:CDS
ATATCAAGTGCTTTCATTCC+AGG	0.329942	1_1:+71057127	None:intergenic
CAGTGGCCATGGATGCCATT+AGG	0.332705	1_1:+71057893	None:intergenic
CAGAAATCCGTCGTAATAAT+GGG	0.339747	1_1:-71055954	Msa0040780:three_prime_UTR
AGTGGCCATGGATGCCATTA+GGG	0.340695	1_1:+71057894	None:intergenic
CATTTGGCATTGAAGGCATT+GGG	0.341360	1_1:-71056488	Msa0040780:CDS
TCTTCCTAAAATACCCCTAA+TGG	0.349026	1_1:-71057908	Msa0040780:exon
ATGATGGCGATGCTGATGTT+TGG	0.369722	1_1:+71057574	None:intergenic
AGCTGCCCATTTGGCATTGA+AGG	0.371858	1_1:-71056495	Msa0040780:CDS
CCATTTGGCATTGAAGGCAT+TGG	0.378323	1_1:-71056489	Msa0040780:CDS
TTTAGATCCTGCATGTGGTT+TGG	0.378494	1_1:-71056320	Msa0040780:three_prime_UTR
AGAGTAGAGTGGAGTGGAAT+GGG	0.386148	1_1:+71057963	None:intergenic
TATTTGTAGGGTCCAACATT+TGG	0.390626	1_1:-71056542	Msa0040780:intron
GGTATGATTGATCATGTTCC+TGG	0.390693	1_1:-71057145	Msa0040780:CDS
AGGACAGAAAGCTGCCCATT+TGG	0.391900	1_1:-71056504	Msa0040780:CDS
CCAAGCCATGCACCACCGCC+TGG	0.393717	1_1:+71057535	None:intergenic
TGTTGTTACAAACTGGGCTT+TGG	0.398106	1_1:-71057293	Msa0040780:CDS
TTTGGAGCAATGATGATATC+AGG	0.399325	1_1:-71056524	Msa0040780:CDS
TTGCATGGATCCTAATGTTA+TGG	0.401616	1_1:-71057245	Msa0040780:CDS
ACCTTAGCTTCCATAACATT+AGG	0.407939	1_1:+71057235	None:intergenic
CCATTGAAGAATGAGGATTT+GGG	0.411622	1_1:+71057841	None:intergenic
CATCTCTTCCTTGACGAAAT+CGG	0.413228	1_1:-71057472	Msa0040780:CDS
TGATGGCGATGCTGATGTTT+GGG	0.416851	1_1:+71057575	None:intergenic
AGAGACGATGGATTCTTTGA+TGG	0.420701	1_1:+71057711	None:intergenic
TTGAAGGTGTTTATATCGTA+GGG	0.424530	1_1:+71057742	None:intergenic
GGGAGGAACAATGCAATTGA+TGG	0.425697	1_1:-71056467	Msa0040780:CDS
CTTACAAGGGAAGTTGTTCC+TGG	0.428163	1_1:-71057076	Msa0040780:CDS
TGCTTAAGTTTACAATTAAG+TGG	0.428955	1_1:-71056378	Msa0040780:exon
TGCACCACCGCCTGGGCTGA+CGG	0.429409	1_1:+71057543	None:intergenic
TCAGCCCAGGCGGTGGTGCA+TGG	0.432135	1_1:-71057540	Msa0040780:CDS
GTGAAGGAAAACAGGGTTGC+TGG	0.432472	1_1:-71057316	Msa0040780:CDS
CCCAAATCCTCATTCTTCAA+TGG	0.439251	1_1:-71057841	Msa0040780:CDS
CAACCATGGCGGAGAAGAGC+TGG	0.441613	1_1:+71057509	None:intergenic
GTTAAGAGGTTGAAGAGTAT+TGG	0.445858	1_1:-71057166	Msa0040780:CDS
CCAATGCCTTCAATGCCAAA+TGG	0.446993	1_1:+71056489	None:intergenic
ATGCTATTGTTCGTCTTACA+AGG	0.448172	1_1:-71057090	Msa0040780:CDS
TGCTGGTGTTGTTACAAACT+GGG	0.449909	1_1:-71057299	Msa0040780:CDS
TAGAGTAGAGTGGAGTGGAA+TGG	0.454622	1_1:+71057962	None:intergenic
TTCGTAAGCGCATGAAAGAC+CGG	0.467780	1_1:+71057609	None:intergenic
CCAGGCGGTGGTGCATGGCT+TGG	0.468875	1_1:-71057535	Msa0040780:CDS
GGCGGTGGTGCATGGCTTGG+TGG	0.469473	1_1:-71057532	Msa0040780:CDS
CAATGCCTTCAATGCCAAAT+GGG	0.477881	1_1:+71056490	None:intergenic
GTGGAGGTGCGAGTAGCAAT+TGG	0.478890	1_1:+71057814	None:intergenic
TTTGAAGGTGTTTATATCGT+AGG	0.479263	1_1:+71057741	None:intergenic
TTTGGCTTCTGCTGAATCAC+AGG	0.481383	1_1:-71056411	Msa0040780:CDS
GGATTTGGGAGTTGAAGAGA+GGG	0.481980	1_1:+71057855	None:intergenic
GACGTCGTCATCGTCGGTGC+TGG	0.483458	1_1:-71057637	Msa0040780:CDS
ATCGTCGGTGCTGGTTCCGC+CGG	0.489753	1_1:-71057628	Msa0040780:CDS
ATCATCATTGCTCCAAATGT+TGG	0.493887	1_1:+71056530	None:intergenic
GTGAGTTCTTGTGGACATGA+TGG	0.494717	1_1:-71057208	Msa0040780:CDS
TGGTATGATTGTTACTGGTA+TGG	0.499259	1_1:-71057056	Msa0040780:CDS
TCCTAATGTTATGGAAGCTA+AGG	0.499413	1_1:-71057236	Msa0040780:CDS
AGGATTTGGGAGTTGAAGAG+AGG	0.501201	1_1:+71057854	None:intergenic
TTGGTGCTACTGGTGTTAAG+AGG	0.502640	1_1:-71057180	Msa0040780:CDS
TGGCCAGCTCTTCTCCGCCA+TGG	0.506064	1_1:-71057512	Msa0040780:CDS
TGCAAGAAGCTTGCTCATGA+TGG	0.508423	1_1:+71057387	None:intergenic
TTTGATGGGTGCGAATTTGA+AGG	0.512764	1_1:+71057726	None:intergenic
GGACAAGAGAAGAAGAGAGA+TGG	0.515630	1_1:-71056185	Msa0040780:three_prime_UTR
GAAGGTGTTTATATCGTAGG+GGG	0.526933	1_1:+71057744	None:intergenic
GAGACGATGGATTCTTTGAT+GGG	0.528361	1_1:+71057712	None:intergenic
CAAGCCATGCACCACCGCCT+GGG	0.530027	1_1:+71057536	None:intergenic
TCGTCAAGGAAGAGATGAGC+TGG	0.531162	1_1:+71057478	None:intergenic
ATCGAACAATCCGTCAGCCC+AGG	0.533608	1_1:-71057553	Msa0040780:CDS
GTTTGGACAAACAAATTGGA+AGG	0.534220	1_1:-71056245	Msa0040780:three_prime_UTR
CCATGCAAGATTGTGTATCA+TGG	0.534946	1_1:+71057260	None:intergenic
ATGGAAGTTGCTGAAATTGA+TGG	0.535463	1_1:-71057037	Msa0040780:CDS
AATACCCCTAATGGCATCCA+TGG	0.539198	1_1:-71057899	Msa0040780:exon
CAATCCGTCAGCCCAGGCGG+TGG	0.543611	1_1:-71057547	Msa0040780:CDS
TTTGTTAGAGTAGAGTGGAG+TGG	0.545041	1_1:+71057957	None:intergenic
CCATGATACACAATCTTGCA+TGG	0.547093	1_1:-71057260	Msa0040780:CDS
GCAGAAGCCAAAATAAGCTC+TGG	0.553231	1_1:+71056422	None:intergenic
TTAACACCAGTAGCACCAAA+AGG	0.554005	1_1:+71057184	None:intergenic
AGTGAGAGATGCAGTGGCCA+TGG	0.554618	1_1:+71057882	None:intergenic
AAGGTTGTTGTGAGTTCTTG+TGG	0.556055	1_1:-71057217	Msa0040780:CDS
CATGTCTGTCATGTAACGGC+GGG	0.560975	1_1:+71057678	None:intergenic
AATCAAATCTTCAGCAGCAA+CGG	0.561053	1_1:+71057339	None:intergenic
ATTGTAAACTTAAGCATCAA+CGG	0.562949	1_1:+71056385	None:intergenic
TGCTGAAGATTTGATTGTGA+AGG	0.565307	1_1:-71057332	Msa0040780:CDS
GGTCATTTCACGAGAGACGA+TGG	0.568258	1_1:+71057699	None:intergenic
TTTGATTGTGAAGGAAAACA+GGG	0.569447	1_1:-71057323	Msa0040780:CDS
ATTGAATCCAAACCACATGC+AGG	0.570803	1_1:+71056313	None:intergenic
GACGATGACGACGTCGGTGT+CGG	0.577296	1_1:+71057645	None:intergenic
GGAAGTAGTGAGAGATGCAG+TGG	0.583000	1_1:+71057876	None:intergenic
AATTGATGGTGCCCCAAGAA+TGG	0.586166	1_1:-71057023	Msa0040780:intron
GACGACGTCGGTGTCGGCGT+AGG	0.595030	1_1:+71057651	None:intergenic
ACTAGCACAACTAGAAAACT+CGG	0.598407	1_1:-71056056	Msa0040780:three_prime_UTR
TGGCATTGAAGGCATTGGGG+AGG	0.601090	1_1:-71056484	Msa0040780:CDS
AGCTGGTTTGCGAACAACCA+TGG	0.605597	1_1:+71057495	None:intergenic
GACACCGACGTCGTCATCGT+CGG	0.606029	1_1:-71057643	Msa0040780:CDS
TGATCATGTCTGTCATGTAA+CGG	0.611235	1_1:+71057674	None:intergenic
GAATAAAGAAAATGTGAATG+AGG	0.611732	1_1:-71056287	Msa0040780:three_prime_UTR
TGCTATTGTTCGTCTTACAA+GGG	0.611924	1_1:-71057089	Msa0040780:CDS
AAGGTGTTTATATCGTAGGG+GGG	0.613541	1_1:+71057745	None:intergenic
AGAAATCCGTCGTAATAATG+GGG	0.616042	1_1:-71055953	Msa0040780:three_prime_UTR
ATTTGGCATTGAAGGCATTG+GGG	0.617526	1_1:-71056487	Msa0040780:CDS
ATTCAACACCGATTTCGTCA+AGG	0.618548	1_1:+71057464	None:intergenic
GGTGGATTTGATGATAGTGG+AGG	0.638284	1_1:+71057798	None:intergenic
TCATGTCTGTCATGTAACGG+CGG	0.638921	1_1:+71057677	None:intergenic
TGAAGGTGTTTATATCGTAG+GGG	0.653158	1_1:+71057743	None:intergenic
GAACAATCCGTCAGCCCAGG+CGG	0.656627	1_1:-71057550	Msa0040780:CDS
GTGGCCATGGATGCCATTAG+GGG	0.656728	1_1:+71057895	None:intergenic
TCTTCCGCAGCAATGAGTGA+CGG	0.662016	1_1:+71055899	None:intergenic
GCTGACGGATTGTTCGATGA+TGG	0.668189	1_1:+71057558	None:intergenic
AGAAAACTCGGATTTAGCGA+CGG	0.677205	1_1:-71056044	Msa0040780:three_prime_UTR
ATACCAGTAACAATCATACC+AGG	0.680671	1_1:+71057058	None:intergenic
GAAATCCGTCGTAATAATGG+GGG	0.682649	1_1:-71055952	Msa0040780:three_prime_UTR
GGGTCGGAAAATATTAGCGA+GGG	0.686490	1_1:-71055932	Msa0040780:three_prime_UTR
GGGGTCGGAAAATATTAGCG+AGG	0.699733	1_1:-71055933	Msa0040780:three_prime_UTR
AGCACCGACGATGACGACGT+CGG	0.741189	1_1:+71057639	None:intergenic
TGGTTTGCGAACAACCATGG+CGG	0.745776	1_1:+71057498	None:intergenic
GTAAGCGCATGAAAGACCGG+CGG	0.790091	1_1:+71057612	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	CTTTTTTATTTCAATTATTT+TGG	-	chr1_1:71056950-71056969	Msa0040780:intron	10.0%
!!!	CTTTTTTATTTCAATTATTT+TGG	-	chr1_1:71056950-71056969	Msa0040780:intron	10.0%
!!	ATTGAATGTTTGAATTATTT+AGG	-	chr1_1:71057740-71057759	Msa0040780:CDS	15.0%
!!!	TCTTTTTCTTTTTTTTTTCT+TGG	+	chr1_1:71057820-71057839	None:intergenic	15.0%
!!	ATTGAATGTTTGAATTATTT+AGG	-	chr1_1:71057740-71057759	Msa0040780:CDS	15.0%
!!!	TCTTTTTCTTTTTTTTTTCT+TGG	+	chr1_1:71057820-71057839	None:intergenic	15.0%
!!	TATATTTTGTTAGAGTAGAG+TGG	+	chr1_1:71055997-71056016	None:intergenic	25.0%
!	TAAAAAAGCTTACCATTCTT+GGG	+	chr1_1:71056938-71056957	None:intergenic	25.0%
!	ATAAAAAAGCTTACCATTCT+TGG	+	chr1_1:71056939-71056958	None:intergenic	25.0%
!!	TGATACTATATAGACTTGTT+TGG	-	chr1_1:71057137-71057156	Msa0040780:CDS	25.0%
!	TTATTACATATGCAAGTGTT+TGG	+	chr1_1:71057243-71057262	None:intergenic	25.0%
!	ATTAGACTGTTTATCTAAAG+AGG	-	chr1_1:71057285-71057304	Msa0040780:CDS	25.0%
!!!	ATTTTGTTGGTGATATTTGT+AGG	-	chr1_1:71057391-71057410	Msa0040780:CDS	25.0%
!!!	TTTTGTTGGTGATATTTGTA+GGG	-	chr1_1:71057392-71057411	Msa0040780:CDS	25.0%
!	ATTGTAAACTTAAGCATCAA+CGG	+	chr1_1:71057564-71057583	None:intergenic	25.0%
!	TGCTTAAGTTTACAATTAAG+TGG	-	chr1_1:71057568-71057587	Msa0040780:CDS	25.0%
!!!	GGATTTAGTTTTTAGTTGTT+TGG	-	chr1_1:71057589-71057608	Msa0040780:CDS	25.0%
!	GAATAAAGAAAATGTGAATG+AGG	-	chr1_1:71057659-71057678	Msa0040780:CDS	25.0%
!!	ACTGTATTTTCATCTATGTT+TGG	-	chr1_1:71057684-71057703	Msa0040780:CDS	25.0%
!!	TATATTTTGTTAGAGTAGAG+TGG	+	chr1_1:71055997-71056016	None:intergenic	25.0%
!	TAAAAAAGCTTACCATTCTT+GGG	+	chr1_1:71056938-71056957	None:intergenic	25.0%
!	ATAAAAAAGCTTACCATTCT+TGG	+	chr1_1:71056939-71056958	None:intergenic	25.0%
!!	TGATACTATATAGACTTGTT+TGG	-	chr1_1:71057137-71057156	Msa0040780:CDS	25.0%
!	TTATTACATATGCAAGTGTT+TGG	+	chr1_1:71057243-71057262	None:intergenic	25.0%
!	ATTAGACTGTTTATCTAAAG+AGG	-	chr1_1:71057285-71057304	Msa0040780:CDS	25.0%
!!!	ATTTTGTTGGTGATATTTGT+AGG	-	chr1_1:71057391-71057410	Msa0040780:CDS	25.0%
!!!	TTTTGTTGGTGATATTTGTA+GGG	-	chr1_1:71057392-71057411	Msa0040780:CDS	25.0%
!	ATTGTAAACTTAAGCATCAA+CGG	+	chr1_1:71057564-71057583	None:intergenic	25.0%
!	TGCTTAAGTTTACAATTAAG+TGG	-	chr1_1:71057568-71057587	Msa0040780:CDS	25.0%
!!!	GGATTTAGTTTTTAGTTGTT+TGG	-	chr1_1:71057589-71057608	Msa0040780:CDS	25.0%
!	GAATAAAGAAAATGTGAATG+AGG	-	chr1_1:71057659-71057678	Msa0040780:CDS	25.0%
!!	ACTGTATTTTCATCTATGTT+TGG	-	chr1_1:71057684-71057703	Msa0040780:CDS	25.0%
!	GTTTTATAAAGGAGATGATG+AGG	+	chr1_1:71055964-71055983	None:intergenic	30.0%
!!!	TAGTGACATGGTGATTTTTT+GGG	+	chr1_1:71056175-71056194	None:intergenic	30.0%
!!!	TTAGTGACATGGTGATTTTT+TGG	+	chr1_1:71056176-71056195	None:intergenic	30.0%
!!	TTGAAGGTGTTTATATCGTA+GGG	+	chr1_1:71056207-71056226	None:intergenic	30.0%
!!	TTTGAAGGTGTTTATATCGT+AGG	+	chr1_1:71056208-71056227	None:intergenic	30.0%
!	GCATTGAAAAGTTTTACGTT+AGG	+	chr1_1:71056588-71056607	None:intergenic	30.0%
	ATTTGATTGTGAAGGAAAAC+AGG	-	chr1_1:71056622-71056641	Msa0040780:intron	30.0%
	TTTGATTGTGAAGGAAAACA+GGG	-	chr1_1:71056623-71056642	Msa0040780:intron	30.0%
	AAAAAAGCTTACCATTCTTG+GGG	+	chr1_1:71056937-71056956	None:intergenic	30.0%
!	TTTATCTAAAGAGGCCTTAT+AGG	-	chr1_1:71057294-71057313	Msa0040780:CDS	30.0%
	TATCTACAAACAAGCCTATA+AGG	+	chr1_1:71057311-71057330	None:intergenic	30.0%
!	ATAGGCTTGTTTGTAGATAT+TGG	-	chr1_1:71057312-71057331	Msa0040780:CDS	30.0%
!	TTAATTTTAGATCCTGCATG+TGG	-	chr1_1:71057621-71057640	Msa0040780:CDS	30.0%
	CTATGTTTGGACAAACAAAT+TGG	-	chr1_1:71057697-71057716	Msa0040780:CDS	30.0%
!!	CCAAAACATTGCTCTTATTT+TGG	+	chr1_1:71057864-71057883	None:intergenic	30.0%
!	CCAAAATAAGAGCAATGTTT+TGG	-	chr1_1:71057861-71057880	Msa0040780:CDS	30.0%
!	GTTTTATAAAGGAGATGATG+AGG	+	chr1_1:71055964-71055983	None:intergenic	30.0%
!!!	TAGTGACATGGTGATTTTTT+GGG	+	chr1_1:71056175-71056194	None:intergenic	30.0%
!!!	TTAGTGACATGGTGATTTTT+TGG	+	chr1_1:71056176-71056195	None:intergenic	30.0%
!!	TTGAAGGTGTTTATATCGTA+GGG	+	chr1_1:71056207-71056226	None:intergenic	30.0%
!!	TTTGAAGGTGTTTATATCGT+AGG	+	chr1_1:71056208-71056227	None:intergenic	30.0%
!	GCATTGAAAAGTTTTACGTT+AGG	+	chr1_1:71056588-71056607	None:intergenic	30.0%
	ATTTGATTGTGAAGGAAAAC+AGG	-	chr1_1:71056622-71056641	Msa0040780:intron	30.0%
	TTTGATTGTGAAGGAAAACA+GGG	-	chr1_1:71056623-71056642	Msa0040780:intron	30.0%
	AAAAAAGCTTACCATTCTTG+GGG	+	chr1_1:71056937-71056956	None:intergenic	30.0%
!	TTTATCTAAAGAGGCCTTAT+AGG	-	chr1_1:71057294-71057313	Msa0040780:CDS	30.0%
	TATCTACAAACAAGCCTATA+AGG	+	chr1_1:71057311-71057330	None:intergenic	30.0%
!	ATAGGCTTGTTTGTAGATAT+TGG	-	chr1_1:71057312-71057331	Msa0040780:CDS	30.0%
!	TTAATTTTAGATCCTGCATG+TGG	-	chr1_1:71057621-71057640	Msa0040780:CDS	30.0%
	CTATGTTTGGACAAACAAAT+TGG	-	chr1_1:71057697-71057716	Msa0040780:CDS	30.0%
!!	CCAAAACATTGCTCTTATTT+TGG	+	chr1_1:71057864-71057883	None:intergenic	30.0%
!	CCAAAATAAGAGCAATGTTT+TGG	-	chr1_1:71057861-71057880	Msa0040780:CDS	30.0%
!!	GAGTGGAATGGGTTTTATAA+AGG	+	chr1_1:71055975-71055994	None:intergenic	35.0%
!!	GGGTATTTTAGGAAGAGAAA+AGG	+	chr1_1:71056034-71056053	None:intergenic	35.0%
	TCTTCCTAAAATACCCCTAA+TGG	-	chr1_1:71056038-71056057	Msa0040780:three_prime_UTR	35.0%
	CCATTGAAGAATGAGGATTT+GGG	+	chr1_1:71056108-71056127	None:intergenic	35.0%
	TCCATTGAAGAATGAGGATT+TGG	+	chr1_1:71056109-71056128	None:intergenic	35.0%
!	TGGTTTTCCATTGAAGAATG+AGG	+	chr1_1:71056115-71056134	None:intergenic	35.0%
!!!	AGTGACATGGTGATTTTTTG+GGG	+	chr1_1:71056174-71056193	None:intergenic	35.0%
!!	TGAAGGTGTTTATATCGTAG+GGG	+	chr1_1:71056206-71056225	None:intergenic	35.0%
	TGATCATGTCTGTCATGTAA+CGG	+	chr1_1:71056275-71056294	None:intergenic	35.0%
	AATCAAATCTTCAGCAGCAA+CGG	+	chr1_1:71056610-71056629	None:intergenic	35.0%
	TGCTGAAGATTTGATTGTGA+AGG	-	chr1_1:71056614-71056633	Msa0040780:intron	35.0%
	TTGCATGGATCCTAATGTTA+TGG	-	chr1_1:71056701-71056720	Msa0040780:intron	35.0%
	TCCTAATGTTATGGAAGCTA+AGG	-	chr1_1:71056710-71056729	Msa0040780:intron	35.0%
	ACCTTAGCTTCCATAACATT+AGG	+	chr1_1:71056714-71056733	None:intergenic	35.0%
!	GTTAAGAGGTTGAAGAGTAT+TGG	-	chr1_1:71056780-71056799	Msa0040780:intron	35.0%
	ATATCAAGTGCTTTCATTCC+AGG	+	chr1_1:71056822-71056841	None:intergenic	35.0%
	ATGCTATTGTTCGTCTTACA+AGG	-	chr1_1:71056856-71056875	Msa0040780:intron	35.0%
	TGCTATTGTTCGTCTTACAA+GGG	-	chr1_1:71056857-71056876	Msa0040780:intron	35.0%
	ATACCAGTAACAATCATACC+AGG	+	chr1_1:71056891-71056910	None:intergenic	35.0%
	TGGTATGATTGTTACTGGTA+TGG	-	chr1_1:71056890-71056909	Msa0040780:intron	35.0%
	ATGGAAGTTGCTGAAATTGA+TGG	-	chr1_1:71056909-71056928	Msa0040780:intron	35.0%
	GCTTGTTTGTAGATATTGGT+TGG	-	chr1_1:71057316-71057335	Msa0040780:CDS	35.0%
!!!	TGGTTGGTTTTGATGCTATT+TGG	-	chr1_1:71057332-71057351	Msa0040780:CDS	35.0%
!	GATGCTATTTGGAGATGATA+AGG	-	chr1_1:71057343-71057362	Msa0040780:CDS	35.0%
!	AGATGTGCTAACGATTTTGT+TGG	-	chr1_1:71057378-71057397	Msa0040780:CDS	35.0%
	TATTTGTAGGGTCCAACATT+TGG	-	chr1_1:71057404-71057423	Msa0040780:CDS	35.0%
	ATCATCATTGCTCCAAATGT+TGG	+	chr1_1:71057419-71057438	None:intergenic	35.0%
!	TTTGGAGCAATGATGATATC+AGG	-	chr1_1:71057422-71057441	Msa0040780:CDS	35.0%
!	AAGTGAACCAGAGCTTATTT+TGG	-	chr1_1:71057517-71057536	Msa0040780:CDS	35.0%
	GTTTGGACAAACAAATTGGA+AGG	-	chr1_1:71057701-71057720	Msa0040780:CDS	35.0%
	ACTAGCACAACTAGAAAACT+CGG	-	chr1_1:71057890-71057909	Msa0040780:CDS	35.0%
!	GGTAATTTTCTGTCGCAAAT+GGG	-	chr1_1:71057923-71057942	Msa0040780:five_prime_UTR	35.0%
!	GTCAGAAAATCGTTTTGCTA+CGG	+	chr1_1:71057956-71057975	None:intergenic	35.0%
!	GTAGCAAAACGATTTTCTGA+CGG	-	chr1_1:71057955-71057974	Msa0040780:five_prime_UTR	35.0%
	ACAGAAATCCGTCGTAATAA+TGG	-	chr1_1:71057991-71058010	Msa0040780:five_prime_UTR	35.0%
	CAGAAATCCGTCGTAATAAT+GGG	-	chr1_1:71057992-71058011	Msa0040780:five_prime_UTR	35.0%
	AGAAATCCGTCGTAATAATG+GGG	-	chr1_1:71057993-71058012	Msa0040780:five_prime_UTR	35.0%
!!	GAGTGGAATGGGTTTTATAA+AGG	+	chr1_1:71055975-71055994	None:intergenic	35.0%
!!	GGGTATTTTAGGAAGAGAAA+AGG	+	chr1_1:71056034-71056053	None:intergenic	35.0%
	TCTTCCTAAAATACCCCTAA+TGG	-	chr1_1:71056038-71056057	Msa0040780:three_prime_UTR	35.0%
	CCATTGAAGAATGAGGATTT+GGG	+	chr1_1:71056108-71056127	None:intergenic	35.0%
	TCCATTGAAGAATGAGGATT+TGG	+	chr1_1:71056109-71056128	None:intergenic	35.0%
!	TGGTTTTCCATTGAAGAATG+AGG	+	chr1_1:71056115-71056134	None:intergenic	35.0%
!!!	AGTGACATGGTGATTTTTTG+GGG	+	chr1_1:71056174-71056193	None:intergenic	35.0%
!!	TGAAGGTGTTTATATCGTAG+GGG	+	chr1_1:71056206-71056225	None:intergenic	35.0%
	TGATCATGTCTGTCATGTAA+CGG	+	chr1_1:71056275-71056294	None:intergenic	35.0%
	AATCAAATCTTCAGCAGCAA+CGG	+	chr1_1:71056610-71056629	None:intergenic	35.0%
	TGCTGAAGATTTGATTGTGA+AGG	-	chr1_1:71056614-71056633	Msa0040780:intron	35.0%
	TTGCATGGATCCTAATGTTA+TGG	-	chr1_1:71056701-71056720	Msa0040780:intron	35.0%
	TCCTAATGTTATGGAAGCTA+AGG	-	chr1_1:71056710-71056729	Msa0040780:intron	35.0%
	ACCTTAGCTTCCATAACATT+AGG	+	chr1_1:71056714-71056733	None:intergenic	35.0%
!	GTTAAGAGGTTGAAGAGTAT+TGG	-	chr1_1:71056780-71056799	Msa0040780:intron	35.0%
	ATATCAAGTGCTTTCATTCC+AGG	+	chr1_1:71056822-71056841	None:intergenic	35.0%
	ATGCTATTGTTCGTCTTACA+AGG	-	chr1_1:71056856-71056875	Msa0040780:intron	35.0%
	TGCTATTGTTCGTCTTACAA+GGG	-	chr1_1:71056857-71056876	Msa0040780:intron	35.0%
	ATACCAGTAACAATCATACC+AGG	+	chr1_1:71056891-71056910	None:intergenic	35.0%
	TGGTATGATTGTTACTGGTA+TGG	-	chr1_1:71056890-71056909	Msa0040780:intron	35.0%
	ATGGAAGTTGCTGAAATTGA+TGG	-	chr1_1:71056909-71056928	Msa0040780:intron	35.0%
	GCTTGTTTGTAGATATTGGT+TGG	-	chr1_1:71057316-71057335	Msa0040780:CDS	35.0%
!!!	TGGTTGGTTTTGATGCTATT+TGG	-	chr1_1:71057332-71057351	Msa0040780:CDS	35.0%
!	GATGCTATTTGGAGATGATA+AGG	-	chr1_1:71057343-71057362	Msa0040780:CDS	35.0%
!	AGATGTGCTAACGATTTTGT+TGG	-	chr1_1:71057378-71057397	Msa0040780:CDS	35.0%
	TATTTGTAGGGTCCAACATT+TGG	-	chr1_1:71057404-71057423	Msa0040780:CDS	35.0%
	ATCATCATTGCTCCAAATGT+TGG	+	chr1_1:71057419-71057438	None:intergenic	35.0%
!	TTTGGAGCAATGATGATATC+AGG	-	chr1_1:71057422-71057441	Msa0040780:CDS	35.0%
!	AAGTGAACCAGAGCTTATTT+TGG	-	chr1_1:71057517-71057536	Msa0040780:CDS	35.0%
	GTTTGGACAAACAAATTGGA+AGG	-	chr1_1:71057701-71057720	Msa0040780:CDS	35.0%
	ACTAGCACAACTAGAAAACT+CGG	-	chr1_1:71057890-71057909	Msa0040780:CDS	35.0%
!	GGTAATTTTCTGTCGCAAAT+GGG	-	chr1_1:71057923-71057942	Msa0040780:five_prime_UTR	35.0%
!	GTCAGAAAATCGTTTTGCTA+CGG	+	chr1_1:71057956-71057975	None:intergenic	35.0%
!	GTAGCAAAACGATTTTCTGA+CGG	-	chr1_1:71057955-71057974	Msa0040780:five_prime_UTR	35.0%
	ACAGAAATCCGTCGTAATAA+TGG	-	chr1_1:71057991-71058010	Msa0040780:five_prime_UTR	35.0%
	CAGAAATCCGTCGTAATAAT+GGG	-	chr1_1:71057992-71058011	Msa0040780:five_prime_UTR	35.0%
	AGAAATCCGTCGTAATAATG+GGG	-	chr1_1:71057993-71058012	Msa0040780:five_prime_UTR	35.0%
	TTTGTTAGAGTAGAGTGGAG+TGG	+	chr1_1:71055992-71056011	None:intergenic	40.0%
!!!	GATGCCATTAGGGGTATTTT+AGG	+	chr1_1:71056045-71056064	None:intergenic	40.0%
	CCCAAATCCTCATTCTTCAA+TGG	-	chr1_1:71056105-71056124	Msa0040780:three_prime_UTR	40.0%
!!!	TGACATGGTGATTTTTTGGG+GGG	+	chr1_1:71056172-71056191	None:intergenic	40.0%
!!!	GTGACATGGTGATTTTTTGG+GGG	+	chr1_1:71056173-71056192	None:intergenic	40.0%
!	AAGGTGTTTATATCGTAGGG+GGG	+	chr1_1:71056204-71056223	None:intergenic	40.0%
!!	GAAGGTGTTTATATCGTAGG+GGG	+	chr1_1:71056205-71056224	None:intergenic	40.0%
!	TTTGATGGGTGCGAATTTGA+AGG	+	chr1_1:71056223-71056242	None:intergenic	40.0%
!	GAGACGATGGATTCTTTGAT+GGG	+	chr1_1:71056237-71056256	None:intergenic	40.0%
!	AGAGACGATGGATTCTTTGA+TGG	+	chr1_1:71056238-71056257	None:intergenic	40.0%
!!	GATGCTGATGTTTGGGTTTT+TGG	+	chr1_1:71056367-71056386	None:intergenic	40.0%
	CATCTCTTCCTTGACGAAAT+CGG	-	chr1_1:71056474-71056493	Msa0040780:CDS	40.0%
!!	ATTCAACACCGATTTCGTCA+AGG	+	chr1_1:71056485-71056504	None:intergenic	40.0%
!!	TTGCTGGTGTTGTTACAAAC+TGG	-	chr1_1:71056646-71056665	Msa0040780:intron	40.0%
!!	TGCTGGTGTTGTTACAAACT+GGG	-	chr1_1:71056647-71056666	Msa0040780:intron	40.0%
	TGTTGTTACAAACTGGGCTT+TGG	-	chr1_1:71056653-71056672	Msa0040780:intron	40.0%
	CCATGCAAGATTGTGTATCA+TGG	+	chr1_1:71056689-71056708	None:intergenic	40.0%
	CCATGATACACAATCTTGCA+TGG	-	chr1_1:71056686-71056705	Msa0040780:intron	40.0%
	AAGGTTGTTGTGAGTTCTTG+TGG	-	chr1_1:71056729-71056748	Msa0040780:intron	40.0%
	TTAACACCAGTAGCACCAAA+AGG	+	chr1_1:71056765-71056784	None:intergenic	40.0%
	GGTATGATTGATCATGTTCC+TGG	-	chr1_1:71056801-71056820	Msa0040780:intron	40.0%
	GTTCCTGGTATGATTGTTAC+TGG	-	chr1_1:71056885-71056904	Msa0040780:intron	40.0%
!!	ATGCAAGTGTTTGGCTTGTT+TGG	+	chr1_1:71057234-71057253	None:intergenic	40.0%
	CAATGCCTTCAATGCCAAAT+GGG	+	chr1_1:71057459-71057478	None:intergenic	40.0%
!!	CATTTGGCATTGAAGGCATT+GGG	-	chr1_1:71057458-71057477	Msa0040780:CDS	40.0%
!!	ATTTGGCATTGAAGGCATTG+GGG	-	chr1_1:71057459-71057478	Msa0040780:CDS	40.0%
	TTTAGATCCTGCATGTGGTT+TGG	-	chr1_1:71057626-71057645	Msa0040780:CDS	40.0%
	ATTGAATCCAAACCACATGC+AGG	+	chr1_1:71057636-71057655	None:intergenic	40.0%
	AGAAAACTCGGATTTAGCGA+CGG	-	chr1_1:71057902-71057921	Msa0040780:exon	40.0%
!	CGGTAATTTTCTGTCGCAAA+TGG	-	chr1_1:71057922-71057941	Msa0040780:five_prime_UTR	40.0%
	GAAATCCGTCGTAATAATGG+GGG	-	chr1_1:71057994-71058013	Msa0040780:five_prime_UTR	40.0%
	TTTGTTAGAGTAGAGTGGAG+TGG	+	chr1_1:71055992-71056011	None:intergenic	40.0%
!!!	GATGCCATTAGGGGTATTTT+AGG	+	chr1_1:71056045-71056064	None:intergenic	40.0%
	CCCAAATCCTCATTCTTCAA+TGG	-	chr1_1:71056105-71056124	Msa0040780:three_prime_UTR	40.0%
!!!	TGACATGGTGATTTTTTGGG+GGG	+	chr1_1:71056172-71056191	None:intergenic	40.0%
!!!	GTGACATGGTGATTTTTTGG+GGG	+	chr1_1:71056173-71056192	None:intergenic	40.0%
!	AAGGTGTTTATATCGTAGGG+GGG	+	chr1_1:71056204-71056223	None:intergenic	40.0%
!!	GAAGGTGTTTATATCGTAGG+GGG	+	chr1_1:71056205-71056224	None:intergenic	40.0%
!	TTTGATGGGTGCGAATTTGA+AGG	+	chr1_1:71056223-71056242	None:intergenic	40.0%
!	GAGACGATGGATTCTTTGAT+GGG	+	chr1_1:71056237-71056256	None:intergenic	40.0%
!	AGAGACGATGGATTCTTTGA+TGG	+	chr1_1:71056238-71056257	None:intergenic	40.0%
!!	GATGCTGATGTTTGGGTTTT+TGG	+	chr1_1:71056367-71056386	None:intergenic	40.0%
	CATCTCTTCCTTGACGAAAT+CGG	-	chr1_1:71056474-71056493	Msa0040780:CDS	40.0%
!!	ATTCAACACCGATTTCGTCA+AGG	+	chr1_1:71056485-71056504	None:intergenic	40.0%
!!	TTGCTGGTGTTGTTACAAAC+TGG	-	chr1_1:71056646-71056665	Msa0040780:intron	40.0%
!!	TGCTGGTGTTGTTACAAACT+GGG	-	chr1_1:71056647-71056666	Msa0040780:intron	40.0%
	TGTTGTTACAAACTGGGCTT+TGG	-	chr1_1:71056653-71056672	Msa0040780:intron	40.0%
	CCATGCAAGATTGTGTATCA+TGG	+	chr1_1:71056689-71056708	None:intergenic	40.0%
	CCATGATACACAATCTTGCA+TGG	-	chr1_1:71056686-71056705	Msa0040780:intron	40.0%
	AAGGTTGTTGTGAGTTCTTG+TGG	-	chr1_1:71056729-71056748	Msa0040780:intron	40.0%
	TTAACACCAGTAGCACCAAA+AGG	+	chr1_1:71056765-71056784	None:intergenic	40.0%
	GGTATGATTGATCATGTTCC+TGG	-	chr1_1:71056801-71056820	Msa0040780:intron	40.0%
	GTTCCTGGTATGATTGTTAC+TGG	-	chr1_1:71056885-71056904	Msa0040780:intron	40.0%
!!	ATGCAAGTGTTTGGCTTGTT+TGG	+	chr1_1:71057234-71057253	None:intergenic	40.0%
	CAATGCCTTCAATGCCAAAT+GGG	+	chr1_1:71057459-71057478	None:intergenic	40.0%
!!	CATTTGGCATTGAAGGCATT+GGG	-	chr1_1:71057458-71057477	Msa0040780:CDS	40.0%
!!	ATTTGGCATTGAAGGCATTG+GGG	-	chr1_1:71057459-71057478	Msa0040780:CDS	40.0%
	TTTAGATCCTGCATGTGGTT+TGG	-	chr1_1:71057626-71057645	Msa0040780:CDS	40.0%
	ATTGAATCCAAACCACATGC+AGG	+	chr1_1:71057636-71057655	None:intergenic	40.0%
	AGAAAACTCGGATTTAGCGA+CGG	-	chr1_1:71057902-71057921	Msa0040780:exon	40.0%
!	CGGTAATTTTCTGTCGCAAA+TGG	-	chr1_1:71057922-71057941	Msa0040780:five_prime_UTR	40.0%
	GAAATCCGTCGTAATAATGG+GGG	-	chr1_1:71057994-71058013	Msa0040780:five_prime_UTR	40.0%
	AGAGTAGAGTGGAGTGGAAT+GGG	+	chr1_1:71055986-71056005	None:intergenic	45.0%
	TAGAGTAGAGTGGAGTGGAA+TGG	+	chr1_1:71055987-71056006	None:intergenic	45.0%
	AATACCCCTAATGGCATCCA+TGG	-	chr1_1:71056047-71056066	Msa0040780:three_prime_UTR	45.0%
	GGATTTGGGAGTTGAAGAGA+GGG	+	chr1_1:71056094-71056113	None:intergenic	45.0%
	AGGATTTGGGAGTTGAAGAG+AGG	+	chr1_1:71056095-71056114	None:intergenic	45.0%
!!	GGTGGATTTGATGATAGTGG+AGG	+	chr1_1:71056151-71056170	None:intergenic	45.0%
	TCATGTCTGTCATGTAACGG+CGG	+	chr1_1:71056272-71056291	None:intergenic	45.0%
	TTCGTAAGCGCATGAAAGAC+CGG	+	chr1_1:71056340-71056359	None:intergenic	45.0%
!	TGATGGCGATGCTGATGTTT+GGG	+	chr1_1:71056374-71056393	None:intergenic	45.0%
!	ATGATGGCGATGCTGATGTT+TGG	+	chr1_1:71056375-71056394	None:intergenic	45.0%
!	TGCAAGAAGCTTGCTCATGA+TGG	+	chr1_1:71056562-71056581	None:intergenic	45.0%
	GTGAGTTCTTGTGGACATGA+TGG	-	chr1_1:71056738-71056757	Msa0040780:intron	45.0%
!	TGTGGACATGATGGTCCTTT+TGG	-	chr1_1:71056747-71056766	Msa0040780:intron	45.0%
!!	TTGGTGCTACTGGTGTTAAG+AGG	-	chr1_1:71056766-71056785	Msa0040780:intron	45.0%
	CTTACAAGGGAAGTTGTTCC+TGG	-	chr1_1:71056870-71056889	Msa0040780:intron	45.0%
!!	AATTGATGGTGCCCCAAGAA+TGG	-	chr1_1:71056923-71056942	Msa0040780:intron	45.0%
	CCAATGCCTTCAATGCCAAA+TGG	+	chr1_1:71057460-71057479	None:intergenic	45.0%
!	CCATTTGGCATTGAAGGCAT+TGG	-	chr1_1:71057457-71057476	Msa0040780:CDS	45.0%
	GGGAGGAACAATGCAATTGA+TGG	-	chr1_1:71057479-71057498	Msa0040780:CDS	45.0%
	GCAGAAGCCAAAATAAGCTC+TGG	+	chr1_1:71057527-71057546	None:intergenic	45.0%
!	TTTGGCTTCTGCTGAATCAC+AGG	-	chr1_1:71057535-71057554	Msa0040780:CDS	45.0%
	GGACAAGAGAAGAAGAGAGA+TGG	-	chr1_1:71057761-71057780	Msa0040780:CDS	45.0%
	GGGTCGGAAAATATTAGCGA+GGG	-	chr1_1:71058014-71058033	Msa0040780:five_prime_UTR	45.0%
	AGAGTAGAGTGGAGTGGAAT+GGG	+	chr1_1:71055986-71056005	None:intergenic	45.0%
	TAGAGTAGAGTGGAGTGGAA+TGG	+	chr1_1:71055987-71056006	None:intergenic	45.0%
	AATACCCCTAATGGCATCCA+TGG	-	chr1_1:71056047-71056066	Msa0040780:three_prime_UTR	45.0%
	GGATTTGGGAGTTGAAGAGA+GGG	+	chr1_1:71056094-71056113	None:intergenic	45.0%
	AGGATTTGGGAGTTGAAGAG+AGG	+	chr1_1:71056095-71056114	None:intergenic	45.0%
!!	GGTGGATTTGATGATAGTGG+AGG	+	chr1_1:71056151-71056170	None:intergenic	45.0%
	TCATGTCTGTCATGTAACGG+CGG	+	chr1_1:71056272-71056291	None:intergenic	45.0%
	TTCGTAAGCGCATGAAAGAC+CGG	+	chr1_1:71056340-71056359	None:intergenic	45.0%
!	TGATGGCGATGCTGATGTTT+GGG	+	chr1_1:71056374-71056393	None:intergenic	45.0%
!	ATGATGGCGATGCTGATGTT+TGG	+	chr1_1:71056375-71056394	None:intergenic	45.0%
!	TGCAAGAAGCTTGCTCATGA+TGG	+	chr1_1:71056562-71056581	None:intergenic	45.0%
	GTGAGTTCTTGTGGACATGA+TGG	-	chr1_1:71056738-71056757	Msa0040780:intron	45.0%
!	TGTGGACATGATGGTCCTTT+TGG	-	chr1_1:71056747-71056766	Msa0040780:intron	45.0%
!!	TTGGTGCTACTGGTGTTAAG+AGG	-	chr1_1:71056766-71056785	Msa0040780:intron	45.0%
	CTTACAAGGGAAGTTGTTCC+TGG	-	chr1_1:71056870-71056889	Msa0040780:intron	45.0%
!!	AATTGATGGTGCCCCAAGAA+TGG	-	chr1_1:71056923-71056942	Msa0040780:intron	45.0%
	CCAATGCCTTCAATGCCAAA+TGG	+	chr1_1:71057460-71057479	None:intergenic	45.0%
!	CCATTTGGCATTGAAGGCAT+TGG	-	chr1_1:71057457-71057476	Msa0040780:CDS	45.0%
	GGGAGGAACAATGCAATTGA+TGG	-	chr1_1:71057479-71057498	Msa0040780:CDS	45.0%
	GCAGAAGCCAAAATAAGCTC+TGG	+	chr1_1:71057527-71057546	None:intergenic	45.0%
!	TTTGGCTTCTGCTGAATCAC+AGG	-	chr1_1:71057535-71057554	Msa0040780:CDS	45.0%
	GGACAAGAGAAGAAGAGAGA+TGG	-	chr1_1:71057761-71057780	Msa0040780:CDS	45.0%
	GGGTCGGAAAATATTAGCGA+GGG	-	chr1_1:71058014-71058033	Msa0040780:five_prime_UTR	45.0%
	AGTGGCCATGGATGCCATTA+GGG	+	chr1_1:71056055-71056074	None:intergenic	50.0%
	GGAAGTAGTGAGAGATGCAG+TGG	+	chr1_1:71056073-71056092	None:intergenic	50.0%
!	GGGGGTGGATTTGATGATAG+TGG	+	chr1_1:71056154-71056173	None:intergenic	50.0%
!!!	CATGGTGATTTTTTGGGGGG+TGG	+	chr1_1:71056169-71056188	None:intergenic	50.0%
	GTTTATATCGTAGGGGGGTG+TGG	+	chr1_1:71056199-71056218	None:intergenic	50.0%
	GGTCATTTCACGAGAGACGA+TGG	+	chr1_1:71056250-71056269	None:intergenic	50.0%
	CATGTCTGTCATGTAACGGC+GGG	+	chr1_1:71056271-71056290	None:intergenic	50.0%
!!	GCTGACGGATTGTTCGATGA+TGG	+	chr1_1:71056391-71056410	None:intergenic	50.0%
!	TGGTTTGCGAACAACCATGG+CGG	+	chr1_1:71056451-71056470	None:intergenic	50.0%
!!	AGCTGGTTTGCGAACAACCA+TGG	+	chr1_1:71056454-71056473	None:intergenic	50.0%
	TCGTCAAGGAAGAGATGAGC+TGG	+	chr1_1:71056471-71056490	None:intergenic	50.0%
	GTGAAGGAAAACAGGGTTGC+TGG	-	chr1_1:71056630-71056649	Msa0040780:intron	50.0%
!!!	GATGGTCCTTTTGGTGCTAC+TGG	-	chr1_1:71056756-71056775	Msa0040780:intron	50.0%
	AGGACAGAAAGCTGCCCATT+TGG	-	chr1_1:71057442-71057461	Msa0040780:CDS	50.0%
!	AGCTGCCCATTTGGCATTGA+AGG	-	chr1_1:71057451-71057470	Msa0040780:CDS	50.0%
!	TCCGTCGTAATAATGGGGGT+CGG	-	chr1_1:71057998-71058017	Msa0040780:five_prime_UTR	50.0%
	TCCGACCCCCATTATTACGA+CGG	+	chr1_1:71058002-71058021	None:intergenic	50.0%
	GGGGTCGGAAAATATTAGCG+AGG	-	chr1_1:71058013-71058032	Msa0040780:five_prime_UTR	50.0%
	AGTGGCCATGGATGCCATTA+GGG	+	chr1_1:71056055-71056074	None:intergenic	50.0%
	GGAAGTAGTGAGAGATGCAG+TGG	+	chr1_1:71056073-71056092	None:intergenic	50.0%
!	GGGGGTGGATTTGATGATAG+TGG	+	chr1_1:71056154-71056173	None:intergenic	50.0%
!!!	CATGGTGATTTTTTGGGGGG+TGG	+	chr1_1:71056169-71056188	None:intergenic	50.0%
	GTTTATATCGTAGGGGGGTG+TGG	+	chr1_1:71056199-71056218	None:intergenic	50.0%
	GGTCATTTCACGAGAGACGA+TGG	+	chr1_1:71056250-71056269	None:intergenic	50.0%
	CATGTCTGTCATGTAACGGC+GGG	+	chr1_1:71056271-71056290	None:intergenic	50.0%
!!	GCTGACGGATTGTTCGATGA+TGG	+	chr1_1:71056391-71056410	None:intergenic	50.0%
!	TGGTTTGCGAACAACCATGG+CGG	+	chr1_1:71056451-71056470	None:intergenic	50.0%
!!	AGCTGGTTTGCGAACAACCA+TGG	+	chr1_1:71056454-71056473	None:intergenic	50.0%
	TCGTCAAGGAAGAGATGAGC+TGG	+	chr1_1:71056471-71056490	None:intergenic	50.0%
	GTGAAGGAAAACAGGGTTGC+TGG	-	chr1_1:71056630-71056649	Msa0040780:intron	50.0%
!!!	GATGGTCCTTTTGGTGCTAC+TGG	-	chr1_1:71056756-71056775	Msa0040780:intron	50.0%
	AGGACAGAAAGCTGCCCATT+TGG	-	chr1_1:71057442-71057461	Msa0040780:CDS	50.0%
!	AGCTGCCCATTTGGCATTGA+AGG	-	chr1_1:71057451-71057470	Msa0040780:CDS	50.0%
!	TCCGTCGTAATAATGGGGGT+CGG	-	chr1_1:71057998-71058017	Msa0040780:five_prime_UTR	50.0%
	TCCGACCCCCATTATTACGA+CGG	+	chr1_1:71058002-71058021	None:intergenic	50.0%
	GGGGTCGGAAAATATTAGCG+AGG	-	chr1_1:71058013-71058032	Msa0040780:five_prime_UTR	50.0%
	GTGGCCATGGATGCCATTAG+GGG	+	chr1_1:71056054-71056073	None:intergenic	55.0%
	CAGTGGCCATGGATGCCATT+AGG	+	chr1_1:71056056-71056075	None:intergenic	55.0%
	AGTGAGAGATGCAGTGGCCA+TGG	+	chr1_1:71056067-71056086	None:intergenic	55.0%
!	GTGGAGGTGCGAGTAGCAAT+TGG	+	chr1_1:71056135-71056154	None:intergenic	55.0%
	GTAAGCGCATGAAAGACCGG+CGG	+	chr1_1:71056337-71056356	None:intergenic	55.0%
	ATCGAACAATCCGTCAGCCC+AGG	-	chr1_1:71056393-71056412	Msa0040780:exon	55.0%
!!	TGGCATTGAAGGCATTGGGG+AGG	-	chr1_1:71057462-71057481	Msa0040780:CDS	55.0%
	GTGGCCATGGATGCCATTAG+GGG	+	chr1_1:71056054-71056073	None:intergenic	55.0%
	CAGTGGCCATGGATGCCATT+AGG	+	chr1_1:71056056-71056075	None:intergenic	55.0%
	AGTGAGAGATGCAGTGGCCA+TGG	+	chr1_1:71056067-71056086	None:intergenic	55.0%
!	GTGGAGGTGCGAGTAGCAAT+TGG	+	chr1_1:71056135-71056154	None:intergenic	55.0%
	GTAAGCGCATGAAAGACCGG+CGG	+	chr1_1:71056337-71056356	None:intergenic	55.0%
	ATCGAACAATCCGTCAGCCC+AGG	-	chr1_1:71056393-71056412	Msa0040780:exon	55.0%
!!	TGGCATTGAAGGCATTGGGG+AGG	-	chr1_1:71057462-71057481	Msa0040780:CDS	55.0%
!	GGGGGGTGTGGTTAGTGACA+TGG	+	chr1_1:71056187-71056206	None:intergenic	60.0%
	GACGATGACGACGTCGGTGT+CGG	+	chr1_1:71056304-71056323	None:intergenic	60.0%
	GACACCGACGTCGTCATCGT+CGG	-	chr1_1:71056303-71056322	Msa0040780:three_prime_UTR	60.0%
!!	AGCACCGACGATGACGACGT+CGG	+	chr1_1:71056310-71056329	None:intergenic	60.0%
	GAACAATCCGTCAGCCCAGG+CGG	-	chr1_1:71056396-71056415	Msa0040780:CDS	60.0%
!	CAACCATGGCGGAGAAGAGC+TGG	+	chr1_1:71056440-71056459	None:intergenic	60.0%
!	GGGGGGTGTGGTTAGTGACA+TGG	+	chr1_1:71056187-71056206	None:intergenic	60.0%
	GACGATGACGACGTCGGTGT+CGG	+	chr1_1:71056304-71056323	None:intergenic	60.0%
	GACACCGACGTCGTCATCGT+CGG	-	chr1_1:71056303-71056322	Msa0040780:three_prime_UTR	60.0%
!!	AGCACCGACGATGACGACGT+CGG	+	chr1_1:71056310-71056329	None:intergenic	60.0%
	GAACAATCCGTCAGCCCAGG+CGG	-	chr1_1:71056396-71056415	Msa0040780:CDS	60.0%
!	CAACCATGGCGGAGAAGAGC+TGG	+	chr1_1:71056440-71056459	None:intergenic	60.0%
	GACGTCGTCATCGTCGGTGC+TGG	-	chr1_1:71056309-71056328	Msa0040780:three_prime_UTR	65.0%
!!	ATCGTCGGTGCTGGTTCCGC+CGG	-	chr1_1:71056318-71056337	Msa0040780:three_prime_UTR	65.0%
	CAAGCCATGCACCACCGCCT+GGG	+	chr1_1:71056413-71056432	None:intergenic	65.0%
	TGGCCAGCTCTTCTCCGCCA+TGG	-	chr1_1:71056434-71056453	Msa0040780:CDS	65.0%
	GACGTCGTCATCGTCGGTGC+TGG	-	chr1_1:71056309-71056328	Msa0040780:three_prime_UTR	65.0%
!!	ATCGTCGGTGCTGGTTCCGC+CGG	-	chr1_1:71056318-71056337	Msa0040780:three_prime_UTR	65.0%
	CAAGCCATGCACCACCGCCT+GGG	+	chr1_1:71056413-71056432	None:intergenic	65.0%
	TGGCCAGCTCTTCTCCGCCA+TGG	-	chr1_1:71056434-71056453	Msa0040780:CDS	65.0%
!!	GACGACGTCGGTGTCGGCGT+AGG	+	chr1_1:71056298-71056317	None:intergenic	70.0%
	CAATCCGTCAGCCCAGGCGG+TGG	-	chr1_1:71056399-71056418	Msa0040780:CDS	70.0%
	TGCACCACCGCCTGGGCTGA+CGG	+	chr1_1:71056406-71056425	None:intergenic	70.0%
	TCAGCCCAGGCGGTGGTGCA+TGG	-	chr1_1:71056406-71056425	Msa0040780:CDS	70.0%
	CCAAGCCATGCACCACCGCC+TGG	+	chr1_1:71056414-71056433	None:intergenic	70.0%
	CCAGGCGGTGGTGCATGGCT+TGG	-	chr1_1:71056411-71056430	Msa0040780:CDS	70.0%
!	GGCGGTGGTGCATGGCTTGG+TGG	-	chr1_1:71056414-71056433	Msa0040780:CDS	70.0%
!!	GACGACGTCGGTGTCGGCGT+AGG	+	chr1_1:71056298-71056317	None:intergenic	70.0%
	CAATCCGTCAGCCCAGGCGG+TGG	-	chr1_1:71056399-71056418	Msa0040780:CDS	70.0%
	TGCACCACCGCCTGGGCTGA+CGG	+	chr1_1:71056406-71056425	None:intergenic	70.0%
	TCAGCCCAGGCGGTGGTGCA+TGG	-	chr1_1:71056406-71056425	Msa0040780:CDS	70.0%
	CCAAGCCATGCACCACCGCC+TGG	+	chr1_1:71056414-71056433	None:intergenic	70.0%
	CCAGGCGGTGGTGCATGGCT+TGG	-	chr1_1:71056411-71056430	Msa0040780:CDS	70.0%
!	GGCGGTGGTGCATGGCTTGG+TGG	-	chr1_1:71056414-71056433	Msa0040780:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	71055910	71058058	71055910	ID=Msa0040780;Name=Msa0040780
chr1_1	mRNA	71055910	71058058	71055910	ID=Msa0040780-mRNA-1;Parent=Msa0040780;Name=Msa0040780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=147\|1\|1\|1\|1\|1\|2\|484\|349
chr1_1	exon	71055910	71056555	71055910	ID=Msa0040780-mRNA-1:exon:23488;Parent=Msa0040780-mRNA-1
chr1_1	exon	71057024	71058058	71057024	ID=Msa0040780-mRNA-1:exon:23487;Parent=Msa0040780-mRNA-1
chr1_1	five_prime_UTR	71057912	71058058	71057912	ID=Msa0040780-mRNA-1:five_prime_utr;Parent=Msa0040780-mRNA-1
chr1_1	CDS	71057024	71057911	71057024	ID=Msa0040780-mRNA-1:cds;Parent=Msa0040780-mRNA-1
chr1_1	CDS	71056394	71056555	71056394	ID=Msa0040780-mRNA-1:cds;Parent=Msa0040780-mRNA-1
chr1_1	three_prime_UTR	71055910	71056393	71055910	ID=Msa0040780-mRNA-1:three_prime_utr;Parent=Msa0040780-mRNA-1

Gene Sequence

>Msa0040780

ATGGCATCCATGGCCACTGCATCTCTCACTACTTCCCTCTCTTCAACTCCCAAATCCTCATTCTTCAATGGAAAACCAATTGCTACTCGCACCTCCACTATCATCAAATCCACCCCCCAAAAAATCACCATGTCACTAACCACACCCCCCTACGATATAAACACCTTCAAATTCGCACCCATCAAAGAATCCATCGTCTCTCGTGAAATGACCCGCCGTTACATGACAGACATGATCACCTACGCCGACACCGACGTCGTCATCGTCGGTGCTGGTTCCGCCGGTCTTTCATGCGCTTACGAATTATCCAAAAACCCAAACATCAGCATCGCCATCATCGAACAATCCGTCAGCCCAGGCGGTGGTGCATGGCTTGGTGGCCAGCTCTTCTCCGCCATGGTTGTTCGCAAACCAGCTCATCTCTTCCTTGACGAAATCGGTGTTGAATATGACGAACAAGAAGACTACGTTGTCATCAAACACGCTGCTCTTTTCACTTCAACCATCATGAGCAAGCTTCTTGCAAAACCTAACGTAAAACTTTTCAATGCCGTTGCTGCTGAAGATTTGATTGTGAAGGAAAACAGGGTTGCTGGTGTTGTTACAAACTGGGCTTTGGTTTCGATGAACCATGATACACAATCTTGCATGGATCCTAATGTTATGGAAGCTAAGGTTGTTGTGAGTTCTTGTGGACATGATGGTCCTTTTGGTGCTACTGGTGTTAAGAGGTTGAAGAGTATTGGTATGATTGATCATGTTCCTGGAATGAAAGCACTTGATATGAATACTGCTGAAGATGCTATTGTTCGTCTTACAAGGGAAGTTGTTCCTGGTATGATTGTTACTGGTATGGAAGTTGCTGAAATTGATGGTGCCCCAAGAATGGGTCCAACATTTGGAGCAATGATGATATCAGGACAGAAAGCTGCCCATTTGGCATTGAAGGCATTGGGGAGGAACAATGCAATTGATGGAACATGTGAATCTGCAAGTGAACCAGAGCTTATTTTGGCTTCTGCTGAATCACAGGACACCGTTGATGCTTAA

Protein sequence

>Msa0040780

MASMATASLTTSLSSTPKSSFFNGKPIATRTSTIIKSTPQKITMSLTTPPYDINTFKFAPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNISIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVEYDEQEDYVVIKHAALFTSTIMSKLLAKPNVKLFNAVAAEDLIVKENRVAGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRNNAIDGTCESASEPELILASAESQDTVDA*