Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053040 | XP_003621817.2 | 95.547 | 539 | 24 | 0 | 26 | 564 | 2 | 540 | 0.0 | 1039 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053040 | G7KVR8 | 95.547 | 539 | 24 | 0 | 26 | 564 | 2 | 540 | 0.0 | 1039 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031340 | Msa1053040 | 0.810885 | 9.227126e-51 | -8.615850e-47 |
| Msa0616160 | Msa1053040 | 0.808736 | 2.674477e-50 | -8.615850e-47 |
| Msa0765910 | Msa1053040 | 0.823350 | 1.452203e-53 | -8.615850e-47 |
| Msa0806790 | Msa1053040 | 0.831477 | 1.632661e-55 | -8.615850e-47 |
| Msa0376350 | Msa1053040 | 0.824134 | 9.512584e-54 | -8.615850e-47 |
| Msa0424790 | Msa1053040 | 0.819714 | 1.004725e-52 | -8.615850e-47 |
| Msa0440750 | Msa1053040 | 0.806566 | 7.728667e-50 | -8.615850e-47 |
| Msa1007560 | Msa1053040 | 0.807265 | 5.498985e-50 | -8.615850e-47 |
| Msa1011370 | Msa1053040 | 0.876207 | 1.677856e-68 | -8.615850e-47 |
| Msa1053040 | Msa1081330 | 0.809574 | 1.769223e-50 | -8.615850e-47 |
| Msa1053040 | Msa1096750 | 0.853827 | 1.846633e-61 | -8.615850e-47 |
| Msa1053040 | Msa1108160 | 0.816817 | 4.547619e-52 | -8.615850e-47 |
| Msa1053040 | Msa1142810 | 0.941507 | 3.687200e-101 | -8.615850e-47 |
| Msa1053040 | Msa1186060 | 0.802281 | 6.043005e-49 | -8.615850e-47 |
| Msa1053040 | Msa1190920 | 0.809469 | 1.863071e-50 | -8.615850e-47 |
| Msa1053040 | Msa1192090 | 0.820732 | 5.872753e-53 | -8.615850e-47 |
| Msa1053040 | Msa1372760 | 0.807090 | 5.989303e-50 | -8.615850e-47 |
| Msa0488560 | Msa1053040 | 0.803804 | 2.926356e-49 | -8.615850e-47 |
| Msa0516170 | Msa1053040 | 0.825753 | 3.947416e-54 | -8.615850e-47 |
| Msa0602390 | Msa1053040 | 0.803701 | 3.074477e-49 | -8.615850e-47 |
| Msa0966400 | Msa1053040 | 0.806417 | 8.311409e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053040 | MtrunA17_Chr7g0222931 | 95.547 | 539 | 24 | 0 | 26 | 564 | 2 | 540 | 0.0 | 1039 |
| Msa1053040 | MtrunA17_Chr1g0182221 | 37.251 | 553 | 306 | 10 | 26 | 559 | 2 | 532 | 1.78e-108 | 335 |
| Msa1053040 | MtrunA17_Chr4g0030901 | 36.949 | 544 | 240 | 12 | 26 | 561 | 2 | 450 | 4.41e-104 | 321 |
| Msa1053040 | MtrunA17_Chr1g0182481 | 48.485 | 132 | 68 | 0 | 414 | 545 | 240 | 371 | 1.18e-34 | 139 |
| Msa1053040 | MtrunA17_Chr2g0320451 | 40.708 | 113 | 62 | 1 | 424 | 531 | 222 | 334 | 1.08e-18 | 90.5 |
| Msa1053040 | MtrunA17_Chr2g0320431 | 38.053 | 113 | 65 | 1 | 424 | 531 | 19 | 131 | 9.84e-18 | 83.6 |
| Msa1053040 | MtrunA17_Chr7g0265211 | 31.081 | 148 | 97 | 4 | 410 | 552 | 228 | 375 | 6.77e-16 | 81.3 |
| Msa1053040 | MtrunA17_Chr1g0179841 | 31.746 | 126 | 81 | 2 | 432 | 552 | 99 | 224 | 7.78e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1053040 | AT5G13660.1 | 36.477 | 562 | 272 | 14 | 44 | 562 | 13 | 532 | 1.92e-98 | 309 |
| Msa1053040 | AT5G13660.2 | 36.412 | 563 | 272 | 15 | 44 | 562 | 13 | 533 | 1.00e-96 | 305 |
| Msa1053040 | AT5G59830.3 | 54.450 | 191 | 73 | 3 | 371 | 561 | 246 | 422 | 2.68e-65 | 219 |
| Msa1053040 | AT5G59830.3 | 31.875 | 160 | 107 | 2 | 26 | 184 | 2 | 160 | 4.80e-15 | 77.8 |
| Msa1053040 | AT5G59830.1 | 54.450 | 191 | 73 | 3 | 371 | 561 | 246 | 422 | 2.68e-65 | 219 |
| Msa1053040 | AT5G59830.1 | 31.875 | 160 | 107 | 2 | 26 | 184 | 2 | 160 | 4.80e-15 | 77.8 |
| Msa1053040 | AT5G59830.2 | 54.450 | 191 | 73 | 3 | 371 | 561 | 246 | 422 | 2.68e-65 | 219 |
| Msa1053040 | AT5G59830.2 | 31.875 | 160 | 107 | 2 | 26 | 184 | 2 | 160 | 4.80e-15 | 77.8 |
| Msa1053040 | AT5G13660.6 | 31.197 | 468 | 261 | 14 | 44 | 480 | 13 | 450 | 4.26e-48 | 174 |
| Msa1053040 | AT5G13660.7 | 31.197 | 468 | 261 | 14 | 44 | 480 | 13 | 450 | 4.26e-48 | 174 |
| Msa1053040 | AT5G13660.4 | 31.130 | 469 | 261 | 15 | 44 | 480 | 13 | 451 | 2.38e-46 | 169 |
| Msa1053040 | AT3G53680.1 | 50.769 | 130 | 64 | 0 | 418 | 547 | 172 | 301 | 1.41e-36 | 145 |
| Msa1053040 | AT3G53680.2 | 50.769 | 130 | 64 | 0 | 418 | 547 | 172 | 301 | 1.50e-36 | 145 |
| Msa1053040 | AT2G37520.1 | 45.513 | 156 | 75 | 2 | 400 | 547 | 138 | 291 | 2.98e-36 | 144 |
| Msa1053040 | AT5G13660.5 | 29.438 | 445 | 253 | 14 | 44 | 457 | 13 | 427 | 4.06e-36 | 140 |
| Msa1053040 | AT5G13660.3 | 29.438 | 445 | 253 | 14 | 44 | 457 | 13 | 427 | 4.06e-36 | 140 |
| Msa1053040 | AT2G27980.1 | 30.702 | 114 | 74 | 1 | 428 | 536 | 377 | 490 | 5.51e-13 | 72.8 |
| Msa1053040 | AT2G36720.1 | 31.897 | 116 | 77 | 1 | 426 | 539 | 258 | 373 | 5.78e-11 | 66.2 |
| Msa1053040 | AT2G36720.2 | 31.897 | 116 | 77 | 1 | 426 | 539 | 258 | 373 | 5.78e-11 | 66.2 |
Find 135 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCAACATCTCTAAATTT+TGG | 0.158676 | 7_2:+22306356 | Msa1053040:CDS |
| CACAGCAGTTCCATTTCTTT+TGG | 0.171039 | 7_2:+22306899 | Msa1053040:CDS |
| AACATGGGAAGGAATGATTT+TGG | 0.179977 | 7_2:+22306275 | Msa1053040:CDS |
| TTCTTTCTCTTGTAATTTGC+TGG | 0.222369 | 7_2:+22308060 | Msa1053040:three_prime_UTR |
| TAATAGTTCTGATCCGTTAA+TGG | 0.239862 | 7_2:+22306967 | Msa1053040:CDS |
| GTGCTATTTACAGGTGGATT+AGG | 0.277455 | 7_2:-22307046 | None:intergenic |
| GAAGGCTTCTTCGCCGTCTT+TGG | 0.290403 | 7_2:-22307115 | None:intergenic |
| AACCACTGATGACTTCTCTT+TGG | 0.320372 | 7_2:-22306032 | None:intergenic |
| AATCTTCAAGGAGTCATAAA+AGG | 0.320515 | 7_2:+22307325 | Msa1053040:CDS |
| CTTGAGCTTCAGCGCATCTA+TGG | 0.322542 | 7_2:+22307838 | Msa1053040:CDS |
| CAACACCTTGAGCTGAGTTC+TGG | 0.325535 | 7_2:-22306994 | None:intergenic |
| ATGGGTCACATCTTCAATAA+AGG | 0.329133 | 7_2:+22306539 | Msa1053040:CDS |
| TGCTATTTACAGGTGGATTA+GGG | 0.335921 | 7_2:-22307045 | None:intergenic |
| TTGATTCACTCAGATCCTTC+TGG | 0.339933 | 7_2:-22307021 | None:intergenic |
| ACCAAAGGAACTTTCGTACT+TGG | 0.339999 | 7_2:+22307678 | Msa1053040:CDS |
| AATAGTTCTGATCCGTTAAT+GGG | 0.344955 | 7_2:+22306968 | Msa1053040:CDS |
| CATTTCAGAATAAAGGCTTC+TGG | 0.345828 | 7_2:+22305943 | Msa1053040:CDS |
| CAAGGAGTCATAAAAGGAAC+TGG | 0.362115 | 7_2:+22307331 | Msa1053040:CDS |
| GTCAAAAGTTTGTTGTCAAC+TGG | 0.363595 | 7_2:+22307160 | Msa1053040:CDS |
| TTGTAGATATGTAACTTCTT+TGG | 0.365565 | 7_2:+22307917 | Msa1053040:three_prime_UTR |
| AACAATGAATGTTTCTCAAT+GGG | 0.370603 | 7_2:+22306130 | Msa1053040:CDS |
| AAATTCTCCGGCGTTAGTTC+CGG | 0.370990 | 7_2:+22304463 | Msa1053040:CDS |
| TCAAAGAATATGTGACTGTT+AGG | 0.374223 | 7_2:-22307557 | None:intergenic |
| TCTCAATGGGAAACCAGTTC+GGG | 0.378276 | 7_2:+22306143 | Msa1053040:CDS |
| GAAGGGAAGCTGTTAGTAGA+AGG | 0.385334 | 7_2:-22307133 | None:intergenic |
| TTCTCAATGGGAAACCAGTT+CGG | 0.391371 | 7_2:+22306142 | Msa1053040:CDS |
| CAACAATGAATGTTTCTCAA+TGG | 0.391558 | 7_2:+22306129 | Msa1053040:CDS |
| CACTTCCATTGTTATACGTT+GGG | 0.393576 | 7_2:-22306502 | None:intergenic |
| AGGAGAAACTTTCACAACTA+TGG | 0.396844 | 7_2:+22306772 | Msa1053040:CDS |
| CAATGGGTCGGTCCTTTGAC+AGG | 0.400048 | 7_2:+22306621 | Msa1053040:CDS |
| ATGAAAACCTCCAAAAGAAA+TGG | 0.400464 | 7_2:-22306909 | None:intergenic |
| TGGGTCACATCTTCAATAAA+GGG | 0.400593 | 7_2:+22306540 | Msa1053040:CDS |
| GTTTGAATCCACCTTATCAT+AGG | 0.401573 | 7_2:-22306801 | None:intergenic |
| TCCAAGTACGAAAGTTCCTT+TGG | 0.410052 | 7_2:-22307679 | None:intergenic |
| CAGCTATGCAACCAACTTCT+CGG | 0.415402 | 7_2:-22305971 | None:intergenic |
| TTCTTGTTGCTGAACATTTG+AGG | 0.417010 | 7_2:-22306071 | None:intergenic |
| GAGTTCTGGTTGCCCATTAA+CGG | 0.417278 | 7_2:-22306980 | None:intergenic |
| AGTCACATATTCTTTGAGAA+TGG | 0.417958 | 7_2:+22307563 | Msa1053040:CDS |
| TCAGACAATTGGCCAGTGAC+TGG | 0.422372 | 7_2:-22306173 | None:intergenic |
| ATAACAATGGGTCAGTCATA+TGG | 0.422911 | 7_2:+22306659 | Msa1053040:CDS |
| CAGTGGAGTCATTCAGTTGA+GGG | 0.429009 | 7_2:-22306937 | None:intergenic |
| GGTCCAACCTATGGTAAATC+AGG | 0.436238 | 7_2:+22306752 | Msa1053040:CDS |
| AGCTATGCAACCAACTTCTC+GGG | 0.441566 | 7_2:-22305970 | None:intergenic |
| AAAGTTCCTTTGGTTGATAG+TGG | 0.444705 | 7_2:-22307669 | None:intergenic |
| TTGTTGATGGGTCACAATCA+TGG | 0.445474 | 7_2:+22306575 | Msa1053040:CDS |
| CTCATGCCCCATGGAATATG+AGG | 0.451401 | 7_2:-22306714 | None:intergenic |
| TGATATCTGCAAGGGGCAAA+AGG | 0.456965 | 7_2:+22307369 | Msa1053040:CDS |
| ATATTTCCACTTCCAATTGA+CGG | 0.459621 | 7_2:-22306251 | None:intergenic |
| GATGCTATTCAAACTGTGAC+AGG | 0.460759 | 7_2:+22307644 | Msa1053040:CDS |
| GCATGAGAGCATTACATCAA+TGG | 0.473987 | 7_2:+22306730 | Msa1053040:CDS |
| CGGTCCTTTGACAGGGGCGA+TGG | 0.475949 | 7_2:+22306629 | Msa1053040:CDS |
| TCTCCTGATTTACCATAGGT+TGG | 0.477084 | 7_2:-22306755 | None:intergenic |
| TATGGCTCCTTCCTATGATA+AGG | 0.482881 | 7_2:+22306790 | Msa1053040:CDS |
| TCGGGATTTCACCCAGTCAC+TGG | 0.483723 | 7_2:+22306161 | Msa1053040:CDS |
| TAAAATATTGTACATGGTCA+AGG | 0.484112 | 7_2:+22307203 | Msa1053040:CDS |
| ATGAATTTGAGCGTCACGCT+GGG | 0.489424 | 7_2:+22307519 | Msa1053040:CDS |
| CCAAAATTTAGAGATGTTGA+AGG | 0.491770 | 7_2:-22306356 | None:intergenic |
| AACAAGAAACAAGCAGTTGA+AGG | 0.495670 | 7_2:+22306086 | Msa1053040:CDS |
| AACATTCCGTCAATTGGAAG+TGG | 0.497012 | 7_2:+22306245 | Msa1053040:CDS |
| GATGGAAATTTCATAACAAT+GGG | 0.497410 | 7_2:+22306647 | Msa1053040:CDS |
| GAACATAACCGAACTTATCA+TGG | 0.498568 | 7_2:-22307877 | None:intergenic |
| AATATATTGTTATCAGCTGC+TGG | 0.498749 | 7_2:-22306431 | None:intergenic |
| AGCTGCTACCATGATAAGTT+CGG | 0.507571 | 7_2:+22307869 | Msa1053040:exon |
| TATGGTAATGATTCGTCTAT+CGG | 0.508871 | 7_2:+22306305 | Msa1053040:CDS |
| TCACTTCCATTGTTATACGT+TGG | 0.511609 | 7_2:-22306503 | None:intergenic |
| GACTGGGTGAAATCCCGAAC+TGG | 0.512048 | 7_2:-22306156 | None:intergenic |
| GCCACCGTCGGGAAATTCTC+CGG | 0.514291 | 7_2:+22304451 | Msa1053040:CDS |
| TTCTGGAGTCCCCGAGAAGT+TGG | 0.514546 | 7_2:+22305960 | Msa1053040:CDS |
| CATGAGAGCATTACATCAAT+GGG | 0.516985 | 7_2:+22306731 | Msa1053040:CDS |
| ACATCAATGGGTCCAACCTA+TGG | 0.518084 | 7_2:+22306743 | Msa1053040:CDS |
| TCTAGGAACCTCATATTCCA+TGG | 0.519808 | 7_2:+22306706 | Msa1053040:CDS |
| CGATGGAAATTTCATAACAA+TGG | 0.521756 | 7_2:+22306646 | Msa1053040:CDS |
| TTCTTCAGTGTCACTATCAA+CGG | 0.529026 | 7_2:+22304422 | Msa1053040:CDS |
| CTCTTGAACAACAGCATAGA+CGG | 0.530061 | 7_2:-22307591 | None:intergenic |
| AAGTGACAACACCATTGCTA+TGG | 0.530676 | 7_2:+22306520 | Msa1053040:CDS |
| GAGTTGCCGCTGTCAAAAGA+TGG | 0.533466 | 7_2:-22306839 | None:intergenic |
| AGTTTCTCCTGATTTACCAT+AGG | 0.534049 | 7_2:-22306759 | None:intergenic |
| CTAGGAACCTCATATTCCAT+GGG | 0.535133 | 7_2:+22306707 | Msa1053040:CDS |
| TATGAATTTGAGCGTCACGC+TGG | 0.536356 | 7_2:+22307518 | Msa1053040:CDS |
| CAGTTGAAGGTGTTAGTGAC+AGG | 0.538066 | 7_2:+22306099 | Msa1053040:CDS |
| GAGAAGTCATCAGTGGTTTG+TGG | 0.544150 | 7_2:+22306037 | Msa1053040:CDS |
| CACATCTTCAATAAAGGGGA+AGG | 0.546475 | 7_2:+22306545 | Msa1053040:CDS |
| CAGACAATTGGCCAGTGACT+GGG | 0.547013 | 7_2:-22306172 | None:intergenic |
| ATTTCCATCGCCCCTGTCAA+AGG | 0.551415 | 7_2:-22306633 | None:intergenic |
| GATGACAATTTGATATCTCT+AGG | 0.565214 | 7_2:+22306689 | Msa1053040:CDS |
| GAATCCACCTTATCATAGGA+AGG | 0.567729 | 7_2:-22306797 | None:intergenic |
| AGTGACAACACCATTGCTAT+GGG | 0.569952 | 7_2:+22306521 | Msa1053040:CDS |
| CTGTCAATGTCTCATTCCAC+AGG | 0.570056 | 7_2:+22306329 | Msa1053040:CDS |
| TGCATAGCTGAAGAAAATGT+TGG | 0.572386 | 7_2:+22305984 | Msa1053040:CDS |
| TATCAGCTGCTGGCGTGCCA+TGG | 0.576021 | 7_2:-22306421 | None:intergenic |
| CCAGTGGAGTCATTCAGTTG+AGG | 0.578078 | 7_2:-22306938 | None:intergenic |
| CCTCAACTGAATGACTCCAC+TGG | 0.578212 | 7_2:+22306938 | Msa1053040:CDS |
| AAAATATTGTACATGGTCAA+GGG | 0.581599 | 7_2:+22307204 | Msa1053040:CDS |
| AATGGGTCGGTCCTTTGACA+GGG | 0.582450 | 7_2:+22306622 | Msa1053040:CDS |
| GGAAGTGGAAATATAAACAT+GGG | 0.583747 | 7_2:+22306260 | Msa1053040:CDS |
| GGCTCCTTCCTATGATAAGG+TGG | 0.586030 | 7_2:+22306793 | Msa1053040:CDS |
| TTCCGGTAAAATATTGTACA+TGG | 0.591553 | 7_2:+22307197 | Msa1053040:CDS |
| AAGGAAGGTGGTGGTTTGTG+AGG | 0.593482 | 7_2:-22308105 | None:intergenic |
| AATGGGTCAGTCATATGGAA+AGG | 0.594796 | 7_2:+22306664 | Msa1053040:CDS |
| AACTGCTGTGACAATTACTC+AGG | 0.595100 | 7_2:-22306886 | None:intergenic |
| GTGGAAATATAAACATGGGA+AGG | 0.596002 | 7_2:+22306264 | Msa1053040:CDS |
| TTTGGAGTGCTATTTACAGG+TGG | 0.603301 | 7_2:-22307052 | None:intergenic |
| CAAAATTTAGAGATGTTGAA+GGG | 0.603626 | 7_2:-22306355 | None:intergenic |
| TGGAAGTGGAAATATAAACA+TGG | 0.609494 | 7_2:+22306259 | Msa1053040:CDS |
| GAAGCTCAAGAGTAGCAGCT+TGG | 0.610166 | 7_2:-22307825 | None:intergenic |
| GGCAACCAGAACTCAGCTCA+AGG | 0.613118 | 7_2:+22306989 | Msa1053040:CDS |
| CACCAAACCGGAACTAACGC+CGG | 0.616872 | 7_2:-22304470 | None:intergenic |
| TGTTCATGTGATATCTGCAA+GGG | 0.617361 | 7_2:+22307361 | Msa1053040:CDS |
| AGATGTTGAAGGGCCTCCTG+TGG | 0.619182 | 7_2:-22306345 | None:intergenic |
| AGAACTATTAATCATTCCAG+TGG | 0.619671 | 7_2:-22306954 | None:intergenic |
| GGGTCACATCTTCAATAAAG+GGG | 0.624180 | 7_2:+22306541 | Msa1053040:CDS |
| CAAGTCAGAGATTCTGACCA+TGG | 0.628932 | 7_2:+22306404 | Msa1053040:CDS |
| GTGTTCATGTGATATCTGCA+AGG | 0.629189 | 7_2:+22307360 | Msa1053040:CDS |
| TCAGACCCAACGTATAACAA+TGG | 0.630204 | 7_2:+22306497 | Msa1053040:CDS |
| TAACTTCTTTGGTGTATGAG+TGG | 0.634062 | 7_2:+22307928 | Msa1053040:three_prime_UTR |
| ACATCTTCAATAAAGGGGAA+GGG | 0.634399 | 7_2:+22306546 | Msa1053040:CDS |
| GCTTCAGCGCATCTATGGAA+AGG | 0.634908 | 7_2:+22307843 | Msa1053040:CDS |
| GCCGGAGAATTTCCCGACGG+TGG | 0.636874 | 7_2:-22304452 | None:intergenic |
| TCAAGGTGTTGACAGCCAGA+AGG | 0.640542 | 7_2:+22307006 | Msa1053040:CDS |
| TGTAATGCTCTCATGCCCCA+TGG | 0.641796 | 7_2:-22306723 | None:intergenic |
| GATGGGTCACAATCATGGCA+AGG | 0.642988 | 7_2:+22306580 | Msa1053040:CDS |
| ATGGGTCGGTCCTTTGACAG+GGG | 0.647731 | 7_2:+22306623 | Msa1053040:CDS |
| AAGGAGTCATAAAAGGAACT+GGG | 0.654430 | 7_2:+22307332 | Msa1053040:CDS |
| TGCAGATATCACATGAACAC+AGG | 0.662846 | 7_2:-22307357 | None:intergenic |
| TTCAGTGTCACTATCAACGG+CGG | 0.664989 | 7_2:+22304425 | Msa1053040:CDS |
| GCTATGCAACCAACTTCTCG+GGG | 0.670612 | 7_2:-22305969 | None:intergenic |
| TGAATTTGAGCGTCACGCTG+GGG | 0.673881 | 7_2:+22307520 | Msa1053040:CDS |
| TCAATGTCTCATTCCACAGG+AGG | 0.675589 | 7_2:+22306332 | Msa1053040:CDS |
| CAGGAGCCACTATCAACCAA+AGG | 0.676859 | 7_2:+22307663 | Msa1053040:CDS |
| AACCAAAGAGAAGTCATCAG+TGG | 0.682911 | 7_2:+22306030 | Msa1053040:CDS |
| ATATTGTACATGGTCAAGGG+AGG | 0.698377 | 7_2:+22307207 | Msa1053040:CDS |
| GAAGATGTGACCCATAGCAA+TGG | 0.703236 | 7_2:-22306531 | None:intergenic |
| TAGGAACCTCATATTCCATG+GGG | 0.726058 | 7_2:+22306708 | Msa1053040:CDS |
| AACGCCGGAGAATTTCCCGA+CGG | 0.732784 | 7_2:-22304455 | None:intergenic |
| GTTCATGTGATATCTGCAAG+GGG | 0.764444 | 7_2:+22307362 | Msa1053040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTAAAAAAAATCATTTTA+AGG | - | chr7_2:22305137-22305156 | None:intergenic | 10.0% |
| !!! | TTTTTTACTTATAATAGTAT+AGG | + | chr7_2:22305147-22305166 | Msa1053040:intron | 10.0% |
| !!! | TGTTTTTAATTTACAAAATT+TGG | + | chr7_2:22305597-22305616 | Msa1053040:intron | 10.0% |
| !! | ATTTATTTAATTGAACAAGT+TGG | - | chr7_2:22304499-22304518 | None:intergenic | 15.0% |
| !! | TTCTATGTAGTTATTTAAAT+CGG | + | chr7_2:22305558-22305577 | Msa1053040:intron | 15.0% |
| !! | AGTAAGAAATTAAAAGAAAA+GGG | - | chr7_2:22305738-22305757 | None:intergenic | 15.0% |
| !! | AAGTAAGAAATTAAAAGAAA+AGG | - | chr7_2:22305739-22305758 | None:intergenic | 15.0% |
| !!! | GTTATTTTTTAACTAGTTTA+TGG | + | chr7_2:22305793-22305812 | Msa1053040:intron | 15.0% |
| !!! | AAAAGTTTTAAAATGTTAGT+AGG | - | chr7_2:22307285-22307304 | None:intergenic | 15.0% |
| !! | ATTAAAATTAGAAGTTGAAA+AGG | - | chr7_2:22307779-22307798 | None:intergenic | 15.0% |
| !!! | CAAAGTATTAACAAATAGAA+GGG | - | chr7_2:22304582-22304601 | None:intergenic | 20.0% |
| !!! | ACAAAGTATTAACAAATAGA+AGG | - | chr7_2:22304583-22304602 | None:intergenic | 20.0% |
| !! | TTTACTTATAATAGTATAGG+AGG | + | chr7_2:22305150-22305169 | Msa1053040:intron | 20.0% |
| !! | TTACTTATAATAGTATAGGA+GGG | + | chr7_2:22305151-22305170 | Msa1053040:intron | 20.0% |
| !!! | TCTTTTAATTTCTTACTTGA+TGG | + | chr7_2:22305741-22305760 | Msa1053040:intron | 20.0% |
| !!! | CTTTTAATTTCTTACTTGAT+GGG | + | chr7_2:22305742-22305761 | Msa1053040:intron | 20.0% |
| !!! | TTTTAATTTCTTACTTGATG+GGG | + | chr7_2:22305743-22305762 | Msa1053040:intron | 20.0% |
| !!! | TTTTAGTCATTTCAGAATAA+AGG | + | chr7_2:22305936-22305955 | Msa1053040:intron | 20.0% |
| !!! | GATAACAATATATTTTCGAT+AGG | + | chr7_2:22306440-22306459 | Msa1053040:CDS | 20.0% |
| !!! | AGATCAACATATTTTATCAA+TGG | + | chr7_2:22306604-22306623 | Msa1053040:CDS | 20.0% |
| !!! | GATCAACATATTTTATCAAT+GGG | + | chr7_2:22306605-22306624 | Msa1053040:CDS | 20.0% |
| !!! | TCATTTTTAGCATTAGATTT+TGG | - | chr7_2:22307073-22307092 | None:intergenic | 20.0% |
| !!! | CAACTTGAATGTTTTATTTA+TGG | + | chr7_2:22308004-22308023 | Msa1053040:three_prime_UTR | 20.0% |
| !! | TATTTAATTGAACAAGTTGG+AGG | - | chr7_2:22304496-22304515 | None:intergenic | 25.0% |
| !!! | TAATGCAGATTTTGATTTGA+TGG | + | chr7_2:22304645-22304664 | Msa1053040:intron | 25.0% |
| !!! | TGTTTGTCTTTGTTTTTTCA+TGG | + | chr7_2:22304791-22304810 | Msa1053040:intron | 25.0% |
| ! | CATAGTAAGTATACTTACTT+TGG | + | chr7_2:22304831-22304850 | Msa1053040:intron | 25.0% |
| !!! | ATCTGGTCTATATTTTAAAC+CGG | + | chr7_2:22305090-22305109 | Msa1053040:intron | 25.0% |
| !!! | TATTTTAAACCGGATACATT+AGG | + | chr7_2:22305100-22305119 | Msa1053040:intron | 25.0% |
| ! | TCAAAGCATGCTTAAAAAAA+GGG | - | chr7_2:22305210-22305229 | None:intergenic | 25.0% |
| ! | TTCAAAGCATGCTTAAAAAA+AGG | - | chr7_2:22305211-22305230 | None:intergenic | 25.0% |
| !! | AGTTGATCTTAATGATTTGT+TGG | + | chr7_2:22305249-22305268 | Msa1053040:intron | 25.0% |
| ! | TTTATTTACTGAATTGTGAG+TGG | + | chr7_2:22305272-22305291 | Msa1053040:intron | 25.0% |
| ! | AGTTTATAAATGCATAACTC+TGG | + | chr7_2:22305374-22305393 | Msa1053040:intron | 25.0% |
| ! | ATGTAGTTATTTAAATCGGA+AGG | + | chr7_2:22305562-22305581 | Msa1053040:intron | 25.0% |
| ! | TAAATTCATATCCGATTGAA+GGG | + | chr7_2:22305670-22305689 | Msa1053040:intron | 25.0% |
| ! | AGAAATTAAAAGAAAAGGGA+AGG | - | chr7_2:22305734-22305753 | None:intergenic | 25.0% |
| !! | TTTAATTTCTTACTTGATGG+GGG | + | chr7_2:22305744-22305763 | Msa1053040:intron | 25.0% |
| ! | CAATAATATGTCTTCATACA+CGG | + | chr7_2:22305824-22305843 | Msa1053040:intron | 25.0% |
| !! | TGTCTTCTTTAAAAATGCAT+TGG | + | chr7_2:22305854-22305873 | Msa1053040:intron | 25.0% |
| ! | AACAATGAATGTTTCTCAAT+GGG | + | chr7_2:22306130-22306149 | Msa1053040:CDS | 25.0% |
| ! | CAAAATTTAGAGATGTTGAA+GGG | - | chr7_2:22306358-22306377 | None:intergenic | 25.0% |
| !! | AACATATTTTATCAATGGGT+CGG | + | chr7_2:22306609-22306628 | Msa1053040:CDS | 25.0% |
| ! | GATGGAAATTTCATAACAAT+GGG | + | chr7_2:22306647-22306666 | Msa1053040:CDS | 25.0% |
| ! | TAAAAACAAAGAACCAAAGA+CGG | + | chr7_2:22307102-22307121 | Msa1053040:CDS | 25.0% |
| !! | ACAAACTTTTGACATTTGAA+GGG | - | chr7_2:22307153-22307172 | None:intergenic | 25.0% |
| !! | AACAAACTTTTGACATTTGA+AGG | - | chr7_2:22307154-22307173 | None:intergenic | 25.0% |
| ! | TAAAATATTGTACATGGTCA+AGG | + | chr7_2:22307203-22307222 | Msa1053040:CDS | 25.0% |
| ! | AAAATATTGTACATGGTCAA+GGG | + | chr7_2:22307204-22307223 | Msa1053040:CDS | 25.0% |
| !! | AAAACTTTTGATGTTCTCAT+TGG | + | chr7_2:22307296-22307315 | Msa1053040:intron | 25.0% |
| ! | TTGTAGATATGTAACTTCTT+TGG | + | chr7_2:22307917-22307936 | Msa1053040:three_prime_UTR | 25.0% |
| ! | GATTCCATTTTCTCATTTCT+AGG | + | chr7_2:22304540-22304559 | Msa1053040:intron | 30.0% |
| GAAACCTAGAAATGAGAAAA+TGG | - | chr7_2:22304547-22304566 | None:intergenic | 30.0% | |
| ! | ATGTTTCTACGTTTAGAGAA+AGG | + | chr7_2:22304748-22304767 | Msa1053040:intron | 30.0% |
| CTTACAATAATAACCACCTA+TGG | - | chr7_2:22305031-22305050 | None:intergenic | 30.0% | |
| TTCTTGAATAACGATGTATC+TGG | + | chr7_2:22305073-22305092 | Msa1053040:intron | 30.0% | |
| GATTTATAAATAGCGCTCTA+TGG | + | chr7_2:22305303-22305322 | Msa1053040:intron | 30.0% | |
| CTAAATTCATATCCGATTGA+AGG | + | chr7_2:22305669-22305688 | Msa1053040:intron | 30.0% | |
| !! | CTTTGTGAATTGTGTTGATT+CGG | + | chr7_2:22305767-22305786 | Msa1053040:intron | 30.0% |
| AAGATAAGCATTCTAAGCTA+TGG | + | chr7_2:22305909-22305928 | Msa1053040:intron | 30.0% | |
| CAACAATGAATGTTTCTCAA+TGG | + | chr7_2:22306129-22306148 | Msa1053040:CDS | 30.0% | |
| GATAAAAACATTCCGTCAAT+TGG | + | chr7_2:22306239-22306258 | Msa1053040:CDS | 30.0% | |
| ATATTTCCACTTCCAATTGA+CGG | - | chr7_2:22306254-22306273 | None:intergenic | 30.0% | |
| TGGAAGTGGAAATATAAACA+TGG | + | chr7_2:22306259-22306278 | Msa1053040:CDS | 30.0% | |
| GGAAGTGGAAATATAAACAT+GGG | + | chr7_2:22306260-22306279 | Msa1053040:CDS | 30.0% | |
| !! | AATGATTTTGGGAATCAGTA+TGG | + | chr7_2:22306287-22306306 | Msa1053040:CDS | 30.0% |
| ! | TATGGTAATGATTCGTCTAT+CGG | + | chr7_2:22306305-22306324 | Msa1053040:CDS | 30.0% |
| CCAAAATTTAGAGATGTTGA+AGG | - | chr7_2:22306359-22306378 | None:intergenic | 30.0% | |
| ! | CCTTCAACATCTCTAAATTT+TGG | + | chr7_2:22306356-22306375 | Msa1053040:CDS | 30.0% |
| ! | TCAACATCTCTAAATTTTGG+TGG | + | chr7_2:22306359-22306378 | Msa1053040:CDS | 30.0% |
| !! | CTCTAAATTTTGGTGGTATA+AGG | + | chr7_2:22306366-22306385 | Msa1053040:CDS | 30.0% |
| AATATATTGTTATCAGCTGC+TGG | - | chr7_2:22306434-22306453 | None:intergenic | 30.0% | |
| CGATGGAAATTTCATAACAA+TGG | + | chr7_2:22306646-22306665 | Msa1053040:CDS | 30.0% | |
| GATGACAATTTGATATCTCT+AGG | + | chr7_2:22306689-22306708 | Msa1053040:CDS | 30.0% | |
| ATGAAAACCTCCAAAAGAAA+TGG | - | chr7_2:22306912-22306931 | None:intergenic | 30.0% | |
| AGAACTATTAATCATTCCAG+TGG | - | chr7_2:22306957-22306976 | None:intergenic | 30.0% | |
| !! | TAATAGTTCTGATCCGTTAA+TGG | + | chr7_2:22306967-22306986 | Msa1053040:CDS | 30.0% |
| !! | AATAGTTCTGATCCGTTAAT+GGG | + | chr7_2:22306968-22306987 | Msa1053040:CDS | 30.0% |
| !! | TTGTCAACTGGTATTTTTGA+TGG | + | chr7_2:22307172-22307191 | Msa1053040:CDS | 30.0% |
| TTCCGGTAAAATATTGTACA+TGG | + | chr7_2:22307197-22307216 | Msa1053040:CDS | 30.0% | |
| ! | GACCATGTACAATATTTTAC+CGG | - | chr7_2:22307202-22307221 | None:intergenic | 30.0% |
| AATCTTCAAGGAGTCATAAA+AGG | + | chr7_2:22307325-22307344 | Msa1053040:CDS | 30.0% | |
| ! | AATTTTTGCAGATCATTGCT+AGG | - | chr7_2:22307475-22307494 | None:intergenic | 30.0% |
| TCAAAGAATATGTGACTGTT+AGG | - | chr7_2:22307560-22307579 | None:intergenic | 30.0% | |
| ! | AGTCACATATTCTTTGAGAA+TGG | + | chr7_2:22307563-22307582 | Msa1053040:CDS | 30.0% |
| GACTTTAATATCTGATGCAA+GGG | - | chr7_2:22307740-22307759 | None:intergenic | 30.0% | |
| TGACTTTAATATCTGATGCA+AGG | - | chr7_2:22307741-22307760 | None:intergenic | 30.0% | |
| ! | TTCTTTCTCTTGTAATTTGC+TGG | + | chr7_2:22308060-22308079 | Msa1053040:three_prime_UTR | 30.0% |
| ! | TTCTTCAGTGTCACTATCAA+CGG | + | chr7_2:22304422-22304441 | Msa1053040:CDS | 35.0% |
| !! | GTGTAGTTGATCGATTTTGA+AGG | + | chr7_2:22304667-22304686 | Msa1053040:intron | 35.0% |
| TACATTCAAAGAGAGAGAGA+TGG | + | chr7_2:22304724-22304743 | Msa1053040:intron | 35.0% | |
| TACTTTGGTCCTATGTATCA+CGG | + | chr7_2:22304846-22304865 | Msa1053040:intron | 35.0% | |
| ATTCAGTGAAGTATGTGTGT+CGG | - | chr7_2:22304927-22304946 | None:intergenic | 35.0% | |
| TATTAGCTGTGTCAACGTAT+CGG | + | chr7_2:22304965-22304984 | Msa1053040:intron | 35.0% | |
| CATTGCATACCTAATGTATC+CGG | - | chr7_2:22305112-22305131 | None:intergenic | 35.0% | |
| !! | TTGTTTTGCGAGGTTAAACT+TGG | + | chr7_2:22305399-22305418 | Msa1053040:intron | 35.0% |
| ! | TGTTTTGCGAGGTTAAACTT+GGG | + | chr7_2:22305400-22305419 | Msa1053040:intron | 35.0% |
| AATGTGTGATGTTAACACAG+AGG | + | chr7_2:22305458-22305477 | Msa1053040:intron | 35.0% | |
| TTAAAAGAAAAGGGAAGGCT+CGG | - | chr7_2:22305729-22305748 | None:intergenic | 35.0% | |
| CATTTCAGAATAAAGGCTTC+TGG | + | chr7_2:22305943-22305962 | Msa1053040:CDS | 35.0% | |
| TGCATAGCTGAAGAAAATGT+TGG | + | chr7_2:22305984-22306003 | Msa1053040:CDS | 35.0% | |
| TTCTTGTTGCTGAACATTTG+AGG | - | chr7_2:22306074-22306093 | None:intergenic | 35.0% | |
| AACAAGAAACAAGCAGTTGA+AGG | + | chr7_2:22306086-22306105 | Msa1053040:CDS | 35.0% | |
| !!! | TTTTTGGATCTGGTCTTGTA+CGG | + | chr7_2:22306201-22306220 | Msa1053040:CDS | 35.0% |
| GTGGAAATATAAACATGGGA+AGG | + | chr7_2:22306264-22306283 | Msa1053040:CDS | 35.0% | |
| ! | AACATGGGAAGGAATGATTT+TGG | + | chr7_2:22306275-22306294 | Msa1053040:CDS | 35.0% |
| ! | ACATGGGAAGGAATGATTTT+GGG | + | chr7_2:22306276-22306295 | Msa1053040:CDS | 35.0% |
| CACTTCCATTGTTATACGTT+GGG | - | chr7_2:22306505-22306524 | None:intergenic | 35.0% | |
| TCACTTCCATTGTTATACGT+TGG | - | chr7_2:22306506-22306525 | None:intergenic | 35.0% | |
| ATGGGTCACATCTTCAATAA+AGG | + | chr7_2:22306539-22306558 | Msa1053040:CDS | 35.0% | |
| TGGGTCACATCTTCAATAAA+GGG | + | chr7_2:22306540-22306559 | Msa1053040:CDS | 35.0% | |
| ACATCTTCAATAAAGGGGAA+GGG | + | chr7_2:22306546-22306565 | Msa1053040:CDS | 35.0% | |
| !!! | GAAGGGAGTTTTTTGTTGAT+GGG | + | chr7_2:22306563-22306582 | Msa1053040:CDS | 35.0% |
| ATAACAATGGGTCAGTCATA+TGG | + | chr7_2:22306659-22306678 | Msa1053040:CDS | 35.0% | |
| !! | CATGAGAGCATTACATCAAT+GGG | + | chr7_2:22306731-22306750 | Msa1053040:CDS | 35.0% |
| AGTTTCTCCTGATTTACCAT+AGG | - | chr7_2:22306762-22306781 | None:intergenic | 35.0% | |
| AGGAGAAACTTTCACAACTA+TGG | + | chr7_2:22306772-22306791 | Msa1053040:CDS | 35.0% | |
| GTTTGAATCCACCTTATCAT+AGG | - | chr7_2:22306804-22306823 | None:intergenic | 35.0% | |
| ! | ACAATTCCATCTTTTGACAG+CGG | + | chr7_2:22306833-22306852 | Msa1053040:CDS | 35.0% |
| !! | TGCTATTTACAGGTGGATTA+GGG | - | chr7_2:22307048-22307067 | None:intergenic | 35.0% |
| !!! | GATTTTGGAGTGCTATTTAC+AGG | - | chr7_2:22307058-22307077 | None:intergenic | 35.0% |
| !! | GTCAAAAGTTTGTTGTCAAC+TGG | + | chr7_2:22307160-22307179 | Msa1053040:CDS | 35.0% |
| !! | TGGTATTTTTGATGGCATTC+CGG | + | chr7_2:22307180-22307199 | Msa1053040:CDS | 35.0% |
| CATTGGCAGAAAAATCTTCA+AGG | + | chr7_2:22307313-22307332 | Msa1053040:intron | 35.0% | |
| AAGGAGTCATAAAAGGAACT+GGG | + | chr7_2:22307332-22307351 | Msa1053040:CDS | 35.0% | |
| TGTTCATGTGATATCTGCAA+GGG | + | chr7_2:22307361-22307380 | Msa1053040:CDS | 35.0% | |
| CTGCAAAAATTCTGTCATGA+AGG | + | chr7_2:22307484-22307503 | Msa1053040:intron | 35.0% | |
| !!! | ACTGTTAGGATGTTTTGACT+TGG | - | chr7_2:22307546-22307565 | None:intergenic | 35.0% |
| !! | AAAGTTCCTTTGGTTGATAG+TGG | - | chr7_2:22307672-22307691 | None:intergenic | 35.0% |
| CTTTCGTACTTGGAAATGTA+AGG | + | chr7_2:22307688-22307707 | Msa1053040:intron | 35.0% | |
| GAACATAACCGAACTTATCA+TGG | - | chr7_2:22307880-22307899 | None:intergenic | 35.0% | |
| ! | TAACTTCTTTGGTGTATGAG+TGG | + | chr7_2:22307928-22307947 | Msa1053040:three_prime_UTR | 35.0% |
| TATGTATCACGGACACTACT+CGG | + | chr7_2:22304857-22304876 | Msa1053040:intron | 40.0% | |
| !! | AACTCTGGTATTGTTTTGCG+AGG | + | chr7_2:22305389-22305408 | Msa1053040:intron | 40.0% |
| ACTTGTGTGCATGCTTGAAA+TGG | + | chr7_2:22305494-22305513 | Msa1053040:intron | 40.0% | |
| ! | TGCATGCTTGAAATGGATTC+TGG | + | chr7_2:22305501-22305520 | Msa1053040:intron | 40.0% |
| AACCAAAGAGAAGTCATCAG+TGG | + | chr7_2:22306030-22306049 | Msa1053040:CDS | 40.0% | |
| AACCACTGATGACTTCTCTT+TGG | - | chr7_2:22306035-22306054 | None:intergenic | 40.0% | |
| TTCTCAATGGGAAACCAGTT+CGG | + | chr7_2:22306142-22306161 | Msa1053040:CDS | 40.0% | |
| CAAAAAGACGGTCAGACAAT+TGG | - | chr7_2:22306187-22306206 | None:intergenic | 40.0% | |
| ! | CAATTGTCTGACCGTCTTTT+TGG | + | chr7_2:22306185-22306204 | Msa1053040:CDS | 40.0% |
| CAAGACCAGATCCAAAAAGA+CGG | - | chr7_2:22306199-22306218 | None:intergenic | 40.0% | |
| AACATTCCGTCAATTGGAAG+TGG | + | chr7_2:22306245-22306264 | Msa1053040:CDS | 40.0% | |
| TCAGACCCAACGTATAACAA+TGG | + | chr7_2:22306497-22306516 | Msa1053040:CDS | 40.0% | |
| AAGTGACAACACCATTGCTA+TGG | + | chr7_2:22306520-22306539 | Msa1053040:CDS | 40.0% | |
| AGTGACAACACCATTGCTAT+GGG | + | chr7_2:22306521-22306540 | Msa1053040:CDS | 40.0% | |
| GGGTCACATCTTCAATAAAG+GGG | + | chr7_2:22306541-22306560 | Msa1053040:CDS | 40.0% | |
| CACATCTTCAATAAAGGGGA+AGG | + | chr7_2:22306545-22306564 | Msa1053040:CDS | 40.0% | |
| !!! | GGAAGGGAGTTTTTTGTTGA+TGG | + | chr7_2:22306562-22306581 | Msa1053040:CDS | 40.0% |
| ! | TTGTTGATGGGTCACAATCA+TGG | + | chr7_2:22306575-22306594 | Msa1053040:CDS | 40.0% |
| AATGGGTCAGTCATATGGAA+AGG | + | chr7_2:22306664-22306683 | Msa1053040:CDS | 40.0% | |
| TCTAGGAACCTCATATTCCA+TGG | + | chr7_2:22306706-22306725 | Msa1053040:CDS | 40.0% | |
| CTAGGAACCTCATATTCCAT+GGG | + | chr7_2:22306707-22306726 | Msa1053040:CDS | 40.0% | |
| TAGGAACCTCATATTCCATG+GGG | + | chr7_2:22306708-22306727 | Msa1053040:CDS | 40.0% | |
| !! | GCATGAGAGCATTACATCAA+TGG | + | chr7_2:22306730-22306749 | Msa1053040:CDS | 40.0% |
| TCTCCTGATTTACCATAGGT+TGG | - | chr7_2:22306758-22306777 | None:intergenic | 40.0% | |
| TATGGCTCCTTCCTATGATA+AGG | + | chr7_2:22306790-22306809 | Msa1053040:CDS | 40.0% | |
| GAATCCACCTTATCATAGGA+AGG | - | chr7_2:22306800-22306819 | None:intergenic | 40.0% | |
| !!! | TTACTCAGGTTTTGACTCAC+AGG | - | chr7_2:22306875-22306894 | None:intergenic | 40.0% |
| AACTGCTGTGACAATTACTC+AGG | - | chr7_2:22306889-22306908 | None:intergenic | 40.0% | |
| ! | CACAGCAGTTCCATTTCTTT+TGG | + | chr7_2:22306899-22306918 | Msa1053040:CDS | 40.0% |
| ! | AGCAGTTCCATTTCTTTTGG+AGG | + | chr7_2:22306902-22306921 | Msa1053040:CDS | 40.0% |
| TTGATTCACTCAGATCCTTC+TGG | - | chr7_2:22307024-22307043 | None:intergenic | 40.0% | |
| !! | GTGCTATTTACAGGTGGATT+AGG | - | chr7_2:22307049-22307068 | None:intergenic | 40.0% |
| !! | TTTGGAGTGCTATTTACAGG+TGG | - | chr7_2:22307055-22307074 | None:intergenic | 40.0% |
| ATATTGTACATGGTCAAGGG+AGG | + | chr7_2:22307207-22307226 | Msa1053040:CDS | 40.0% | |
| CAAGGAGTCATAAAAGGAAC+TGG | + | chr7_2:22307331-22307350 | Msa1053040:CDS | 40.0% | |
| TGCAGATATCACATGAACAC+AGG | - | chr7_2:22307360-22307379 | None:intergenic | 40.0% | |
| GTGTTCATGTGATATCTGCA+AGG | + | chr7_2:22307360-22307379 | Msa1053040:CDS | 40.0% | |
| GTTCATGTGATATCTGCAAG+GGG | + | chr7_2:22307362-22307381 | Msa1053040:CDS | 40.0% | |
| TATGCATGAGCACTATTGCT+AGG | - | chr7_2:22307437-22307456 | None:intergenic | 40.0% | |
| CTCTTGAACAACAGCATAGA+CGG | - | chr7_2:22307594-22307613 | None:intergenic | 40.0% | |
| GATGCTATTCAAACTGTGAC+AGG | + | chr7_2:22307644-22307663 | Msa1053040:CDS | 40.0% | |
| ACCAAAGGAACTTTCGTACT+TGG | + | chr7_2:22307678-22307697 | Msa1053040:CDS | 40.0% | |
| TCCAAGTACGAAAGTTCCTT+TGG | - | chr7_2:22307682-22307701 | None:intergenic | 40.0% | |
| TTGGTATGATGCTGAAAAGG+AGG | - | chr7_2:22307809-22307828 | None:intergenic | 40.0% | |
| AGCTTGGTATGATGCTGAAA+AGG | - | chr7_2:22307812-22307831 | None:intergenic | 40.0% | |
| AGCTGCTACCATGATAAGTT+CGG | + | chr7_2:22307869-22307888 | Msa1053040:exon | 40.0% | |
| ! | TTCAGTGTCACTATCAACGG+CGG | + | chr7_2:22304425-22304444 | Msa1053040:CDS | 45.0% |
| AAATTCTCCGGCGTTAGTTC+CGG | + | chr7_2:22304463-22304482 | Msa1053040:CDS | 45.0% | |
| GAGTAGTGTCCGTGATACAT+AGG | - | chr7_2:22304858-22304877 | None:intergenic | 45.0% | |
| ATGTATCACGGACACTACTC+GGG | + | chr7_2:22304858-22304877 | Msa1053040:intron | 45.0% | |
| TAAGACGAGAGCCCTTCAAT+CGG | - | chr7_2:22305684-22305703 | None:intergenic | 45.0% | |
| AAGGGCTCTCGTCTTAAGAA+AGG | + | chr7_2:22305688-22305707 | Msa1053040:intron | 45.0% | |
| AGCTATGCAACCAACTTCTC+GGG | - | chr7_2:22305973-22305992 | None:intergenic | 45.0% | |
| CAGCTATGCAACCAACTTCT+CGG | - | chr7_2:22305974-22305993 | None:intergenic | 45.0% | |
| GAGAAGTCATCAGTGGTTTG+TGG | + | chr7_2:22306037-22306056 | Msa1053040:CDS | 45.0% | |
| !! | CAGTTGAAGGTGTTAGTGAC+AGG | + | chr7_2:22306099-22306118 | Msa1053040:CDS | 45.0% |
| TCTCAATGGGAAACCAGTTC+GGG | + | chr7_2:22306143-22306162 | Msa1053040:CDS | 45.0% | |
| ! | TCTGACCGTCTTTTTGGATC+TGG | + | chr7_2:22306191-22306210 | Msa1053040:CDS | 45.0% |
| CTGTCAATGTCTCATTCCAC+AGG | + | chr7_2:22306329-22306348 | Msa1053040:CDS | 45.0% | |
| TCAATGTCTCATTCCACAGG+AGG | + | chr7_2:22306332-22306351 | Msa1053040:CDS | 45.0% | |
| CAAGTCAGAGATTCTGACCA+TGG | + | chr7_2:22306404-22306423 | Msa1053040:CDS | 45.0% | |
| GAAGATGTGACCCATAGCAA+TGG | - | chr7_2:22306534-22306553 | None:intergenic | 45.0% | |
| ACATCAATGGGTCCAACCTA+TGG | + | chr7_2:22306743-22306762 | Msa1053040:CDS | 45.0% | |
| GGTCCAACCTATGGTAAATC+AGG | + | chr7_2:22306752-22306771 | Msa1053040:CDS | 45.0% | |
| CAGTGGAGTCATTCAGTTGA+GGG | - | chr7_2:22306940-22306959 | None:intergenic | 45.0% | |
| ! | GAGTTCTGGTTGCCCATTAA+CGG | - | chr7_2:22306983-22307002 | None:intergenic | 45.0% |
| GAAGGGAAGCTGTTAGTAGA+AGG | - | chr7_2:22307136-22307155 | None:intergenic | 45.0% | |
| TGATATCTGCAAGGGGCAAA+AGG | + | chr7_2:22307369-22307388 | Msa1053040:CDS | 45.0% | |
| TATGAATTTGAGCGTCACGC+TGG | + | chr7_2:22307518-22307537 | Msa1053040:CDS | 45.0% | |
| ATGAATTTGAGCGTCACGCT+GGG | + | chr7_2:22307519-22307538 | Msa1053040:CDS | 45.0% | |
| AGAGCTGAAAAACAGTCCTC+AGG | + | chr7_2:22307610-22307629 | Msa1053040:CDS | 45.0% | |
| !! | GCATCAAAAAGCATCTCCTG+AGG | - | chr7_2:22307629-22307648 | None:intergenic | 45.0% |
| !! | TAAAAAAATTAAATAAAGAA+TGG | - | chr7_2:22305185-22305204 | None:intergenic | 5.0% |
| !! | ACAAGTTGGAGGCACCAAAC+CGG | - | chr7_2:22304485-22304504 | None:intergenic | 50.0% |
| GCTATGCAACCAACTTCTCG+GGG | - | chr7_2:22305972-22305991 | None:intergenic | 50.0% | |
| CAGACAATTGGCCAGTGACT+GGG | - | chr7_2:22306175-22306194 | None:intergenic | 50.0% | |
| TCAGACAATTGGCCAGTGAC+TGG | - | chr7_2:22306176-22306195 | None:intergenic | 50.0% | |
| GATGGGTCACAATCATGGCA+AGG | + | chr7_2:22306580-22306599 | Msa1053040:CDS | 50.0% | |
| AATGGGTCGGTCCTTTGACA+GGG | + | chr7_2:22306622-22306641 | Msa1053040:CDS | 50.0% | |
| ATTTCCATCGCCCCTGTCAA+AGG | - | chr7_2:22306636-22306655 | None:intergenic | 50.0% | |
| CTCATGCCCCATGGAATATG+AGG | - | chr7_2:22306717-22306736 | None:intergenic | 50.0% | |
| TGTAATGCTCTCATGCCCCA+TGG | - | chr7_2:22306726-22306745 | None:intergenic | 50.0% | |
| GGCTCCTTCCTATGATAAGG+TGG | + | chr7_2:22306793-22306812 | Msa1053040:CDS | 50.0% | |
| GAGTTGCCGCTGTCAAAAGA+TGG | - | chr7_2:22306842-22306861 | None:intergenic | 50.0% | |
| CCAGTGGAGTCATTCAGTTG+AGG | - | chr7_2:22306941-22306960 | None:intergenic | 50.0% | |
| CCTCAACTGAATGACTCCAC+TGG | + | chr7_2:22306938-22306957 | Msa1053040:CDS | 50.0% | |
| CAACACCTTGAGCTGAGTTC+TGG | - | chr7_2:22306997-22307016 | None:intergenic | 50.0% | |
| !! | TCAAGGTGTTGACAGCCAGA+AGG | + | chr7_2:22307006-22307025 | Msa1053040:CDS | 50.0% |
| TGAATTTGAGCGTCACGCTG+GGG | + | chr7_2:22307520-22307539 | Msa1053040:CDS | 50.0% | |
| CAGGAGCCACTATCAACCAA+AGG | + | chr7_2:22307663-22307682 | Msa1053040:CDS | 50.0% | |
| ! | TCTGATGCAAGGGTGTGCTT+GGG | - | chr7_2:22307730-22307749 | None:intergenic | 50.0% |
| ! | ATCTGATGCAAGGGTGTGCT+TGG | - | chr7_2:22307731-22307750 | None:intergenic | 50.0% |
| GAAGCTCAAGAGTAGCAGCT+TGG | - | chr7_2:22307828-22307847 | None:intergenic | 50.0% | |
| CTTGAGCTTCAGCGCATCTA+TGG | + | chr7_2:22307838-22307857 | Msa1053040:CDS | 50.0% | |
| GCTTCAGCGCATCTATGGAA+AGG | + | chr7_2:22307843-22307862 | Msa1053040:CDS | 50.0% | |
| AACGCCGGAGAATTTCCCGA+CGG | - | chr7_2:22304458-22304477 | None:intergenic | 55.0% | |
| CACCAAACCGGAACTAACGC+CGG | - | chr7_2:22304473-22304492 | None:intergenic | 55.0% | |
| TCACGGACACTACTCGGGTT+AGG | + | chr7_2:22304863-22304882 | Msa1053040:intron | 55.0% | |
| CACGGACATTGGACACGACA+CGG | - | chr7_2:22304994-22305013 | None:intergenic | 55.0% | |
| ACAGCTACGGACACGGACAT+TGG | - | chr7_2:22305005-22305024 | None:intergenic | 55.0% | |
| ATGGAGCACAGCTACGGACA+CGG | - | chr7_2:22305012-22305031 | None:intergenic | 55.0% | |
| TGTCCGTAGCTGTGCTCCAT+AGG | + | chr7_2:22305012-22305031 | Msa1053040:intron | 55.0% | |
| CCACCTATGGAGCACAGCTA+CGG | - | chr7_2:22305018-22305037 | None:intergenic | 55.0% | |
| !! | TTCTGGAGTCCCCGAGAAGT+TGG | + | chr7_2:22305960-22305979 | Msa1053040:CDS | 55.0% |
| GACTGGGTGAAATCCCGAAC+TGG | - | chr7_2:22306159-22306178 | None:intergenic | 55.0% | |
| TCGGGATTTCACCCAGTCAC+TGG | + | chr7_2:22306161-22306180 | Msa1053040:CDS | 55.0% | |
| AGATGTTGAAGGGCCTCCTG+TGG | - | chr7_2:22306348-22306367 | None:intergenic | 55.0% | |
| CAATGGGTCGGTCCTTTGAC+AGG | + | chr7_2:22306621-22306640 | Msa1053040:CDS | 55.0% | |
| ATGGGTCGGTCCTTTGACAG+GGG | + | chr7_2:22306623-22306642 | Msa1053040:CDS | 55.0% | |
| GGCAACCAGAACTCAGCTCA+AGG | + | chr7_2:22306989-22307008 | Msa1053040:CDS | 55.0% | |
| GAAGGCTTCTTCGCCGTCTT+TGG | - | chr7_2:22307118-22307137 | None:intergenic | 55.0% | |
| GCCACCGTCGGGAAATTCTC+CGG | + | chr7_2:22304451-22304470 | Msa1053040:CDS | 60.0% | |
| CTCCGGCGTTAGTTCCGGTT+TGG | + | chr7_2:22304468-22304487 | Msa1053040:intron | 60.0% | |
| CCGTAGCTGTGCTCCATAGG+TGG | + | chr7_2:22305015-22305034 | Msa1053040:intron | 60.0% | |
| GGGAAGGCTCGGAAGACAGA+TGG | - | chr7_2:22305718-22305737 | None:intergenic | 60.0% | |
| TATCAGCTGCTGGCGTGCCA+TGG | - | chr7_2:22306424-22306443 | None:intergenic | 60.0% | |
| GCCGGAGAATTTCCCGACGG+TGG | - | chr7_2:22304455-22304474 | None:intergenic | 65.0% | |
| CGGTCCTTTGACAGGGGCGA+TGG | + | chr7_2:22306629-22306648 | Msa1053040:CDS | 65.0% | |
| CAACGGCGGAACGCCACCGT+CGG | + | chr7_2:22304439-22304458 | Msa1053040:CDS | 70.0% | |
| AACGGCGGAACGCCACCGTC+GGG | + | chr7_2:22304440-22304459 | Msa1053040:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 22304410 | 22308115 | 22304410 | ID=Msa1053040;Name=Msa1053040 |
| chr7_2 | mRNA | 22304410 | 22308115 | 22304410 | ID=Msa1053040-mRNA-1;Parent=Msa1053040;Name=Msa1053040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.75|1|1|0.75|0.8|5|233|564 |
| chr7_2 | exon | 22304410 | 22304484 | 22304410 | ID=Msa1053040-mRNA-1:exon:5041;Parent=Msa1053040-mRNA-1 |
| chr7_2 | exon | 22305942 | 22307228 | 22305942 | ID=Msa1053040-mRNA-1:exon:5042;Parent=Msa1053040-mRNA-1 |
| chr7_2 | exon | 22307322 | 22307390 | 22307322 | ID=Msa1053040-mRNA-1:exon:5043;Parent=Msa1053040-mRNA-1 |
| chr7_2 | exon | 22307506 | 22307704 | 22307506 | ID=Msa1053040-mRNA-1:exon:5044;Parent=Msa1053040-mRNA-1 |
| chr7_2 | exon | 22307818 | 22308115 | 22307818 | ID=Msa1053040-mRNA-1:exon:5045;Parent=Msa1053040-mRNA-1 |
| chr7_2 | CDS | 22304410 | 22304484 | 22304410 | ID=Msa1053040-mRNA-1:cds;Parent=Msa1053040-mRNA-1 |
| chr7_2 | CDS | 22305942 | 22307228 | 22305942 | ID=Msa1053040-mRNA-1:cds;Parent=Msa1053040-mRNA-1 |
| chr7_2 | CDS | 22307322 | 22307390 | 22307322 | ID=Msa1053040-mRNA-1:cds;Parent=Msa1053040-mRNA-1 |
| chr7_2 | CDS | 22307506 | 22307704 | 22307506 | ID=Msa1053040-mRNA-1:cds;Parent=Msa1053040-mRNA-1 |
| chr7_2 | CDS | 22307818 | 22307882 | 22307818 | ID=Msa1053040-mRNA-1:cds;Parent=Msa1053040-mRNA-1 |
| chr7_2 | three_prime_UTR | 22307883 | 22308115 | 22307883 | ID=Msa1053040-mRNA-1:three_prime_utr;Parent=Msa1053040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
