Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011370 | XP_003621817.2 | 95.362 | 539 | 25 | 0 | 53 | 591 | 2 | 540 | 0.0 | 1035 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011370 | G7KVR8 | 95.362 | 539 | 25 | 0 | 53 | 591 | 2 | 540 | 0.0 | 1035 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001780 | Msa1011370 | 0.815448 | 9.197332e-52 | -8.615850e-47 |
| Msa0031340 | Msa1011370 | 0.821323 | 4.291150e-53 | -8.615850e-47 |
| Msa0616160 | Msa1011370 | 0.813702 | 2.238754e-51 | -8.615850e-47 |
| Msa0765910 | Msa1011370 | 0.847722 | 9.661669e-60 | -8.615850e-47 |
| Msa0806790 | Msa1011370 | 0.848376 | 6.373997e-60 | -8.615850e-47 |
| Msa0806800 | Msa1011370 | 0.810508 | 1.112999e-50 | -8.615850e-47 |
| Msa0832340 | Msa1011370 | 0.805715 | 1.167781e-49 | -8.615850e-47 |
| Msa0171290 | Msa1011370 | 0.817655 | 2.947067e-52 | -8.615850e-47 |
| Msa0178570 | Msa1011370 | 0.811448 | 6.965242e-51 | -8.615850e-47 |
| Msa0376350 | Msa1011370 | 0.814867 | 1.237708e-51 | -8.615850e-47 |
| Msa0376630 | Msa1011370 | 0.817729 | 2.835261e-52 | -8.615850e-47 |
| Msa0464970 | Msa1011370 | 0.806013 | 1.010662e-49 | -8.615850e-47 |
| Msa0471670 | Msa1011370 | 0.802190 | 6.309926e-49 | -8.615850e-47 |
| Msa1011370 | Msa1053040 | 0.876207 | 1.677856e-68 | -8.615850e-47 |
| Msa1011370 | Msa1108160 | 0.824043 | 9.997265e-54 | -8.615850e-47 |
| Msa1011370 | Msa1142810 | 0.896791 | 2.626621e-76 | -8.615850e-47 |
| Msa1011370 | Msa1166560 | 0.800595 | 1.338704e-48 | -8.615850e-47 |
| Msa1011370 | Msa1189070 | 0.809723 | 1.643580e-50 | -8.615850e-47 |
| Msa1011370 | Msa1279400 | 0.803953 | 2.725635e-49 | -8.615850e-47 |
| Msa1011370 | Msa1284550 | 0.807387 | 5.180823e-50 | -8.615850e-47 |
| Msa1011370 | Msa1333480 | 0.807620 | 4.623380e-50 | -8.615850e-47 |
| Msa1011370 | Msa1372240 | 0.801802 | 7.582734e-49 | -8.615850e-47 |
| Msa1011370 | Msa1372760 | 0.804084 | 2.559859e-49 | -8.615850e-47 |
| Msa1011370 | Msa1398340 | 0.800663 | 1.296626e-48 | -8.615850e-47 |
| Msa1011370 | Msa1402400 | 0.805308 | 1.421229e-49 | -8.615850e-47 |
| Msa1011370 | Msa1411020 | 0.809200 | 2.128337e-50 | -8.615850e-47 |
| Msa1011370 | Msa1422580 | 0.800926 | 1.145733e-48 | -8.615850e-47 |
| Msa1011370 | Msa1424290 | 0.811692 | 6.164290e-51 | -8.615850e-47 |
| Msa1011370 | Msa1434350 | 0.812614 | 3.879659e-51 | -8.615850e-47 |
| Msa1011370 | Msa1439320 | 0.815689 | 8.130172e-52 | -8.615850e-47 |
| Msa0260780 | Msa1011370 | 0.806914 | 6.526516e-50 | -8.615850e-47 |
| Msa0267920 | Msa1011370 | 0.811588 | 6.493848e-51 | -8.615850e-47 |
| Msa0503060 | Msa1011370 | 0.802542 | 5.339050e-49 | -8.615850e-47 |
| Msa0516170 | Msa1011370 | 0.818215 | 2.201810e-52 | -8.615850e-47 |
| Msa0542520 | Msa1011370 | 0.802171 | 6.368485e-49 | -8.615850e-47 |
| Msa0576880 | Msa1011370 | 0.800828 | 1.199902e-48 | -8.615850e-47 |
| Msa0602390 | Msa1011370 | 0.820618 | 6.236302e-53 | -8.615850e-47 |
| Msa0847770 | Msa1011370 | 0.804549 | 2.048526e-49 | -8.615850e-47 |
| Msa0966400 | Msa1011370 | 0.809095 | 2.241393e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011370 | MtrunA17_Chr7g0222931 | 95.362 | 539 | 25 | 0 | 53 | 591 | 2 | 540 | 0.0 | 1035 |
| Msa1011370 | MtrunA17_Chr1g0182221 | 37.251 | 553 | 306 | 10 | 53 | 586 | 2 | 532 | 2.97e-107 | 333 |
| Msa1011370 | MtrunA17_Chr4g0030901 | 36.949 | 544 | 240 | 12 | 53 | 588 | 2 | 450 | 6.18e-103 | 318 |
| Msa1011370 | MtrunA17_Chr1g0182481 | 48.485 | 132 | 68 | 0 | 441 | 572 | 240 | 371 | 1.47e-34 | 139 |
| Msa1011370 | MtrunA17_Chr2g0320451 | 40.708 | 113 | 62 | 1 | 451 | 558 | 222 | 334 | 1.20e-18 | 90.5 |
| Msa1011370 | MtrunA17_Chr2g0320431 | 38.053 | 113 | 65 | 1 | 451 | 558 | 19 | 131 | 1.11e-17 | 83.6 |
| Msa1011370 | MtrunA17_Chr7g0265211 | 31.081 | 148 | 97 | 4 | 437 | 579 | 228 | 375 | 9.75e-16 | 80.9 |
| Msa1011370 | MtrunA17_Chr1g0179841 | 31.496 | 127 | 82 | 2 | 458 | 579 | 98 | 224 | 8.18e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011370 | AT5G13660.1 | 37.455 | 550 | 283 | 14 | 71 | 589 | 13 | 532 | 6.61e-98 | 309 |
| Msa1011370 | AT5G13660.2 | 37.568 | 551 | 282 | 15 | 71 | 589 | 13 | 533 | 2.71e-96 | 305 |
| Msa1011370 | AT5G59830.3 | 54.450 | 191 | 73 | 3 | 398 | 588 | 246 | 422 | 6.84e-65 | 219 |
| Msa1011370 | AT5G59830.3 | 31.875 | 160 | 107 | 2 | 53 | 211 | 2 | 160 | 1.53e-14 | 76.6 |
| Msa1011370 | AT5G59830.1 | 54.450 | 191 | 73 | 3 | 398 | 588 | 246 | 422 | 6.84e-65 | 219 |
| Msa1011370 | AT5G59830.1 | 31.875 | 160 | 107 | 2 | 53 | 211 | 2 | 160 | 1.53e-14 | 76.6 |
| Msa1011370 | AT5G59830.2 | 54.450 | 191 | 73 | 3 | 398 | 588 | 246 | 422 | 6.84e-65 | 219 |
| Msa1011370 | AT5G59830.2 | 31.875 | 160 | 107 | 2 | 53 | 211 | 2 | 160 | 1.53e-14 | 76.6 |
| Msa1011370 | AT5G13660.6 | 31.197 | 468 | 261 | 14 | 71 | 507 | 13 | 450 | 7.46e-48 | 174 |
| Msa1011370 | AT5G13660.7 | 31.197 | 468 | 261 | 14 | 71 | 507 | 13 | 450 | 7.46e-48 | 174 |
| Msa1011370 | AT5G13660.4 | 31.343 | 469 | 260 | 15 | 71 | 507 | 13 | 451 | 4.25e-46 | 169 |
| Msa1011370 | AT3G53680.1 | 50.769 | 130 | 64 | 0 | 445 | 574 | 172 | 301 | 2.42e-36 | 145 |
| Msa1011370 | AT3G53680.2 | 50.769 | 130 | 64 | 0 | 445 | 574 | 172 | 301 | 2.52e-36 | 145 |
| Msa1011370 | AT2G37520.1 | 45.513 | 156 | 75 | 2 | 427 | 574 | 138 | 291 | 4.90e-36 | 144 |
| Msa1011370 | AT5G13660.5 | 29.438 | 445 | 253 | 14 | 71 | 484 | 13 | 427 | 6.77e-36 | 140 |
| Msa1011370 | AT5G13660.3 | 29.438 | 445 | 253 | 14 | 71 | 484 | 13 | 427 | 6.77e-36 | 140 |
| Msa1011370 | AT2G27980.1 | 30.702 | 114 | 74 | 1 | 455 | 563 | 377 | 490 | 6.62e-13 | 72.4 |
| Msa1011370 | AT2G36720.1 | 31.897 | 116 | 77 | 1 | 453 | 566 | 258 | 373 | 6.20e-11 | 66.2 |
| Msa1011370 | AT2G36720.2 | 31.897 | 116 | 77 | 1 | 453 | 566 | 258 | 373 | 6.20e-11 | 66.2 |
Find 151 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCAACATCTCTAAATTT+TGG | 0.158676 | 7_1:-15549903 | Msa1011370:CDS |
| CACAGCAGTTCCATTTCTTT+TGG | 0.171039 | 7_1:-15549360 | Msa1011370:CDS |
| AACATGGGAAGGAATGATTT+TGG | 0.179977 | 7_1:-15549984 | Msa1011370:CDS |
| TTCTTTCTCTTGTAATTTGC+TGG | 0.222369 | 7_1:-15548199 | Msa1011370:three_prime_UTR |
| TAATAGTTCTGATCCGTTAA+TGG | 0.239862 | 7_1:-15549292 | Msa1011370:CDS |
| GTGCTATTTACAGGTGGATT+AGG | 0.277455 | 7_1:+15549213 | None:intergenic |
| TCCGGCGTTAGTTCCGGTTT+GGG | 0.285436 | 7_1:-15551795 | Msa1011370:five_prime_UTR |
| CTCCGGCGTTAGTTCCGGTT+TGG | 0.308873 | 7_1:-15551796 | Msa1011370:five_prime_UTR |
| GAAACCTAGAAATGAGAAAA+TGG | 0.314810 | 7_1:+15551720 | None:intergenic |
| AACCACTGATGACTTCTCTT+TGG | 0.320372 | 7_1:+15550227 | None:intergenic |
| AATCTTCAAGGAGTCATAAA+AGG | 0.320515 | 7_1:-15548934 | Msa1011370:CDS |
| CTTGAGCTTCAGCGCATCTA+TGG | 0.322542 | 7_1:-15548421 | Msa1011370:CDS |
| CAACACCTTGAGCTGAGTTC+TGG | 0.325535 | 7_1:+15549265 | None:intergenic |
| ATGGGTCACATCTTCAATAA+AGG | 0.329133 | 7_1:-15549720 | Msa1011370:CDS |
| TGCTATTTACAGGTGGATTA+GGG | 0.335921 | 7_1:+15549214 | None:intergenic |
| TTGATTCACTCAGATCCTTC+TGG | 0.339933 | 7_1:+15549238 | None:intergenic |
| ACCAAAGGAACTTTCGTACT+TGG | 0.339999 | 7_1:-15548581 | Msa1011370:CDS |
| AATAGTTCTGATCCGTTAAT+GGG | 0.344955 | 7_1:-15549291 | Msa1011370:CDS |
| CATTTCAGAATAAAGGCTTC+TGG | 0.345828 | 7_1:-15550316 | Msa1011370:CDS |
| CAAGGAGTCATAAAAGGAAC+TGG | 0.362115 | 7_1:-15548928 | Msa1011370:CDS |
| GTCAAAAGTTTGTTGTCAAC+TGG | 0.363595 | 7_1:-15549099 | Msa1011370:CDS |
| TTGTAGATATGTAACTTCTT+TGG | 0.365565 | 7_1:-15548342 | Msa1011370:three_prime_UTR |
| AACAATGAATGTTTCTCAAT+GGG | 0.370603 | 7_1:-15550129 | Msa1011370:CDS |
| AAATTCTCCGGCGTTAGTTC+CGG | 0.370990 | 7_1:-15551801 | Msa1011370:five_prime_UTR |
| TCAAAGAATATGTGACTGTT+AGG | 0.374223 | 7_1:+15548702 | None:intergenic |
| TCTCAATGGGAAACCAGTTC+GGG | 0.378276 | 7_1:-15550116 | Msa1011370:CDS |
| GAAGGGAAGCTGTTAGTAGA+AGG | 0.385334 | 7_1:+15549126 | None:intergenic |
| TTCTCAATGGGAAACCAGTT+CGG | 0.391371 | 7_1:-15550117 | Msa1011370:CDS |
| CAACAATGAATGTTTCTCAA+TGG | 0.391558 | 7_1:-15550130 | Msa1011370:CDS |
| CACTTCCATTGTTATACGTT+GGG | 0.393576 | 7_1:+15549757 | None:intergenic |
| AGGAGAAACTTTCACAACTA+TGG | 0.396844 | 7_1:-15549487 | Msa1011370:CDS |
| CAATGGGTCGGTCCTTTGAC+AGG | 0.400048 | 7_1:-15549638 | Msa1011370:CDS |
| ATGAAAACCTCCAAAAGAAA+TGG | 0.400464 | 7_1:+15549350 | None:intergenic |
| AGTAAGAAATTAAAAGAAAA+GGG | 0.400507 | 7_1:+15550524 | None:intergenic |
| TGGGTCACATCTTCAATAAA+GGG | 0.400593 | 7_1:-15549719 | Msa1011370:CDS |
| GTTTGAATCCACCTTATCAT+AGG | 0.401573 | 7_1:+15549458 | None:intergenic |
| TCCAAGTACGAAAGTTCCTT+TGG | 0.410052 | 7_1:+15548580 | None:intergenic |
| TTCTTGTTGCTGAACATTTG+AGG | 0.417010 | 7_1:+15550188 | None:intergenic |
| GAGTTCTGGTTGCCCATTAA+CGG | 0.417278 | 7_1:+15549279 | None:intergenic |
| AGTCACATATTCTTTGAGAA+TGG | 0.417958 | 7_1:-15548696 | Msa1011370:CDS |
| AAGTAAGAAATTAAAAGAAA+AGG | 0.419488 | 7_1:+15550523 | None:intergenic |
| TCAGACAATTGGCCAGTGAC+TGG | 0.422372 | 7_1:+15550086 | None:intergenic |
| ATAACAATGGGTCAGTCATA+TGG | 0.422911 | 7_1:-15549600 | Msa1011370:CDS |
| CAGTGGAGTCATTCAGTTGA+GGG | 0.429009 | 7_1:+15549322 | None:intergenic |
| GGTCCAACCTATGGTAAATC+AGG | 0.436238 | 7_1:-15549507 | Msa1011370:CDS |
| ATTTATTTAATTGAACAAGT+TGG | 0.440606 | 7_1:+15551768 | None:intergenic |
| AAAGTTCCTTTGGTTGATAG+TGG | 0.444705 | 7_1:+15548590 | None:intergenic |
| TTGTTGATGGGTCACAATCA+TGG | 0.445474 | 7_1:-15549684 | Msa1011370:CDS |
| AGCTATGCAACCAACTTCTC+CGG | 0.446203 | 7_1:+15550289 | None:intergenic |
| CTTTGTGAATTGTGTTGATT+CGG | 0.448250 | 7_1:-15550492 | Msa1011370:intron |
| GCAAATTACAAGAGAAAGAA+TGG | 0.450206 | 7_1:+15548202 | None:intergenic |
| CTCATGCCCCATGGAATATG+AGG | 0.451401 | 7_1:+15549545 | None:intergenic |
| TGATATCTGCAAGGGGCAAA+AGG | 0.456965 | 7_1:-15548890 | Msa1011370:intron |
| ATATTTCCACTTCCAATTGA+CGG | 0.459621 | 7_1:+15550008 | None:intergenic |
| GATGCTATTCAAACTGTGAC+AGG | 0.460759 | 7_1:-15548615 | Msa1011370:CDS |
| GCATGAGAGCATTACATCAA+TGG | 0.473987 | 7_1:-15549529 | Msa1011370:CDS |
| AACGGCGGAGCGCCACCGTC+GGG | 0.473994 | 7_1:-15551824 | Msa1011370:five_prime_UTR |
| CGGTCCTTTGACAGGGGCGA+TGG | 0.475949 | 7_1:-15549630 | Msa1011370:CDS |
| TCTCCTGATTTACCATAGGT+TGG | 0.477084 | 7_1:+15549504 | None:intergenic |
| TATGGCTCCTTCCTATGATA+AGG | 0.482881 | 7_1:-15549469 | Msa1011370:CDS |
| TCGGGATTTCACCCAGTCAC+TGG | 0.483723 | 7_1:-15550098 | Msa1011370:CDS |
| TAAAATATTGTACATGGTCA+AGG | 0.484112 | 7_1:-15549056 | Msa1011370:CDS |
| ATGAATTTGAGCGTCACGCT+GGG | 0.489424 | 7_1:-15548740 | Msa1011370:CDS |
| CCAAAATTTAGAGATGTTGA+AGG | 0.491770 | 7_1:+15549903 | None:intergenic |
| AACAAGAAACAAGCAGTTGA+AGG | 0.495670 | 7_1:-15550173 | Msa1011370:CDS |
| AACATTCCGTCAATTGGAAG+TGG | 0.497012 | 7_1:-15550014 | Msa1011370:CDS |
| GATGGAAATTTCATAACAAT+GGG | 0.497410 | 7_1:-15549612 | Msa1011370:CDS |
| GAACATAACCGAACTTATCA+TGG | 0.498568 | 7_1:+15548382 | None:intergenic |
| AATATATTGTTATCAGCTGC+TGG | 0.498749 | 7_1:+15549828 | None:intergenic |
| TTCTGGAGTCCCGGAGAAGT+TGG | 0.500916 | 7_1:-15550299 | Msa1011370:CDS |
| TTTAATTTCTTACTTGATGG+GGG | 0.501221 | 7_1:-15550515 | Msa1011370:CDS |
| AGCTGCTACCATGATAAGTT+CGG | 0.507571 | 7_1:-15548390 | Msa1011370:exon |
| TATGGTAATGATTCGTCTAT+CGG | 0.508871 | 7_1:-15549954 | Msa1011370:CDS |
| TCACTTCCATTGTTATACGT+TGG | 0.511609 | 7_1:+15549756 | None:intergenic |
| GACTGGGTGAAATCCCGAAC+TGG | 0.512048 | 7_1:+15550103 | None:intergenic |
| GCCACCGTCGGGAAATTCTC+CGG | 0.514705 | 7_1:-15551813 | Msa1011370:five_prime_UTR |
| CATGAGAGCATTACATCAAT+GGG | 0.516985 | 7_1:-15549528 | Msa1011370:CDS |
| ACATCAATGGGTCCAACCTA+TGG | 0.518084 | 7_1:-15549516 | Msa1011370:CDS |
| TCTAGGAACCTCATATTCCA+TGG | 0.519808 | 7_1:-15549553 | Msa1011370:CDS |
| CGATGGAAATTTCATAACAA+TGG | 0.521756 | 7_1:-15549613 | Msa1011370:CDS |
| CCGGCGTTAGTTCCGGTTTG+GGG | 0.524658 | 7_1:-15551794 | Msa1011370:five_prime_UTR |
| TTCTTCAGTGTCACTATCAA+CGG | 0.529026 | 7_1:-15551842 | Msa1011370:five_prime_UTR |
| TATTTAATTGAACAAGTTGG+AGG | 0.529614 | 7_1:+15551771 | None:intergenic |
| CTCTTGAACAACAGCATAGA+CGG | 0.530061 | 7_1:+15548668 | None:intergenic |
| ACAAGTTGGAGGCCCCAAAC+CGG | 0.530363 | 7_1:+15551782 | None:intergenic |
| AAGTGACAACACCATTGCTA+TGG | 0.530676 | 7_1:-15549739 | Msa1011370:CDS |
| GAGTTGCCGCTGTCAAAAGA+TGG | 0.533466 | 7_1:+15549420 | None:intergenic |
| AGTTTCTCCTGATTTACCAT+AGG | 0.534049 | 7_1:+15549500 | None:intergenic |
| CTAGGAACCTCATATTCCAT+GGG | 0.535133 | 7_1:-15549552 | Msa1011370:CDS |
| TATGAATTTGAGCGTCACGC+TGG | 0.536356 | 7_1:-15548741 | Msa1011370:CDS |
| AATAAAGGCTTCTGGAGTCC+CGG | 0.537369 | 7_1:-15550308 | Msa1011370:CDS |
| CAGTTGAAGGTGTTAGTGAC+AGG | 0.538066 | 7_1:-15550160 | Msa1011370:CDS |
| CAGACAATTGGCCAGTGACT+GGG | 0.538084 | 7_1:+15550087 | None:intergenic |
| GAGAAGTCATCAGTGGTTTG+TGG | 0.544150 | 7_1:-15550222 | Msa1011370:CDS |
| CACATCTTCAATAAAGGGGA+AGG | 0.546475 | 7_1:-15549714 | Msa1011370:CDS |
| ATTTCCATCGCCCCTGTCAA+AGG | 0.551415 | 7_1:+15549626 | None:intergenic |
| GCTATGCAACCAACTTCTCC+GGG | 0.555439 | 7_1:+15550290 | None:intergenic |
| AAGGGCTCTCGTCTTAAGAA+AGG | 0.558840 | 7_1:-15550572 | Msa1011370:CDS |
| GATGACAATTTGATATCTCT+AGG | 0.565214 | 7_1:-15549570 | Msa1011370:CDS |
| GAATCCACCTTATCATAGGA+AGG | 0.567729 | 7_1:+15549462 | None:intergenic |
| AGTGACAACACCATTGCTAT+GGG | 0.569952 | 7_1:-15549738 | Msa1011370:CDS |
| CTGTCAATGTCTCATTCCAC+AGG | 0.570056 | 7_1:-15549930 | Msa1011370:CDS |
| GGAAAGGCTCGGAAGACAGA+TGG | 0.572037 | 7_1:+15550545 | None:intergenic |
| TGCATAGCTGAAGAAAATGT+TGG | 0.572386 | 7_1:-15550275 | Msa1011370:CDS |
| TATCAGCTGCTGGCGTGCCA+TGG | 0.576021 | 7_1:+15549838 | None:intergenic |
| CCAGTGGAGTCATTCAGTTG+AGG | 0.578078 | 7_1:+15549321 | None:intergenic |
| CCTCAACTGAATGACTCCAC+TGG | 0.578212 | 7_1:-15549321 | Msa1011370:CDS |
| AAAATATTGTACATGGTCAA+GGG | 0.581599 | 7_1:-15549055 | Msa1011370:CDS |
| CAACGGCGGAGCGCCACCGT+CGG | 0.581851 | 7_1:-15551825 | Msa1011370:five_prime_UTR |
| AATGGGTCGGTCCTTTGACA+GGG | 0.582450 | 7_1:-15549637 | Msa1011370:CDS |
| GGAAGTGGAAATATAAACAT+GGG | 0.583747 | 7_1:-15549999 | Msa1011370:CDS |
| GGCTCCTTCCTATGATAAGG+TGG | 0.586030 | 7_1:-15549466 | Msa1011370:CDS |
| TTCCGGTAAAATATTGTACA+TGG | 0.591553 | 7_1:-15549062 | Msa1011370:CDS |
| AAGGAAGGTGGTGGTTTGTG+AGG | 0.593482 | 7_1:+15548154 | None:intergenic |
| GAAATTAAAAGAAAAGGGAA+AGG | 0.594132 | 7_1:+15550529 | None:intergenic |
| AATGGGTCAGTCATATGGAA+AGG | 0.594796 | 7_1:-15549595 | Msa1011370:CDS |
| AACTGCTGTGACAATTACTC+AGG | 0.595100 | 7_1:+15549373 | None:intergenic |
| GTGGAAATATAAACATGGGA+AGG | 0.596002 | 7_1:-15549995 | Msa1011370:CDS |
| TAAAAGAAAAGGGAAAGGCT+CGG | 0.598819 | 7_1:+15550534 | None:intergenic |
| TTTGGAGTGCTATTTACAGG+TGG | 0.603301 | 7_1:+15549207 | None:intergenic |
| CAAAATTTAGAGATGTTGAA+GGG | 0.603626 | 7_1:+15549904 | None:intergenic |
| TGGAAGTGGAAATATAAACA+TGG | 0.609494 | 7_1:-15550000 | Msa1011370:CDS |
| GAAGCTCAAGAGTAGCAGCT+TGG | 0.610166 | 7_1:+15548434 | None:intergenic |
| GGCAACCAGAACTCAGCTCA+AGG | 0.613118 | 7_1:-15549270 | Msa1011370:CDS |
| TGTTCATGTGATATCTGCAA+GGG | 0.617361 | 7_1:-15548898 | Msa1011370:CDS |
| AGATGTTGAAGGGCCTCCTG+TGG | 0.619182 | 7_1:+15549914 | None:intergenic |
| AGAACTATTAATCATTCCAG+TGG | 0.619671 | 7_1:+15549305 | None:intergenic |
| GGGTCACATCTTCAATAAAG+GGG | 0.624180 | 7_1:-15549718 | Msa1011370:CDS |
| CAAGTCAGAGATTCTGACCA+TGG | 0.628932 | 7_1:-15549855 | Msa1011370:CDS |
| GTGTTCATGTGATATCTGCA+AGG | 0.629189 | 7_1:-15548899 | Msa1011370:CDS |
| TCAGACCCAACGTATAACAA+TGG | 0.630204 | 7_1:-15549762 | Msa1011370:CDS |
| TAACTTCTTTGGTGTATGAG+TGG | 0.634062 | 7_1:-15548331 | Msa1011370:three_prime_UTR |
| ACATCTTCAATAAAGGGGAA+GGG | 0.634399 | 7_1:-15549713 | Msa1011370:CDS |
| GCTTCAGCGCATCTATGGAA+AGG | 0.634908 | 7_1:-15548416 | Msa1011370:CDS |
| GCCGGAGAATTTCCCGACGG+TGG | 0.636874 | 7_1:+15551812 | None:intergenic |
| TCAAGGTGTTGACAGCCAGA+AGG | 0.640542 | 7_1:-15549253 | Msa1011370:CDS |
| TGTAATGCTCTCATGCCCCA+TGG | 0.641796 | 7_1:+15549536 | None:intergenic |
| GATGGGTCACAATCATGGCA+AGG | 0.642988 | 7_1:-15549679 | Msa1011370:CDS |
| ATGGGTCGGTCCTTTGACAG+GGG | 0.647731 | 7_1:-15549636 | Msa1011370:CDS |
| TTCAGTGTCACTATCAACGG+CGG | 0.654201 | 7_1:-15551839 | Msa1011370:five_prime_UTR |
| AAGGAGTCATAAAAGGAACT+GGG | 0.654430 | 7_1:-15548927 | Msa1011370:CDS |
| TGCAGATATCACATGAACAC+AGG | 0.662846 | 7_1:+15548902 | None:intergenic |
| TGAATTTGAGCGTCACGCTG+GGG | 0.673881 | 7_1:-15548739 | Msa1011370:CDS |
| TCAATGTCTCATTCCACAGG+AGG | 0.675589 | 7_1:-15549927 | Msa1011370:CDS |
| CAGGAGCCACTATCAACCAA+AGG | 0.676859 | 7_1:-15548596 | Msa1011370:CDS |
| AACCAAAGAGAAGTCATCAG+TGG | 0.682911 | 7_1:-15550229 | Msa1011370:CDS |
| ATATTGTACATGGTCAAGGG+AGG | 0.698377 | 7_1:-15549052 | Msa1011370:intron |
| GAAGATGTGACCCATAGCAA+TGG | 0.703236 | 7_1:+15549728 | None:intergenic |
| TAGGAACCTCATATTCCATG+GGG | 0.726058 | 7_1:-15549551 | Msa1011370:CDS |
| AACGCCGGAGAATTTCCCGA+CGG | 0.732784 | 7_1:+15551809 | None:intergenic |
| GTTCATGTGATATCTGCAAG+GGG | 0.764444 | 7_1:-15548897 | Msa1011370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTAAAAAAAATCATTTTA+AGG | + | chr7_1:15548906-15548925 | None:intergenic | 10.0% |
| !!! | TGTTTTTAATTTACAAAATT+TGG | - | chr7_1:15549366-15549385 | Msa1011370:CDS | 10.0% |
| !! | ATTTATTTAATTGAACAAGT+TGG | + | chr7_1:15548264-15548283 | None:intergenic | 15.0% |
| !!! | AAAAGTATTAACAAATAGAA+GGG | + | chr7_1:15548344-15548363 | None:intergenic | 15.0% |
| !!! | AAAAAGTATTAACAAATAGA+AGG | + | chr7_1:15548345-15548364 | None:intergenic | 15.0% |
| !!! | TTTTTACTTATAATAGTGAT+AGG | - | chr7_1:15548917-15548936 | Msa1011370:CDS | 15.0% |
| !! | AAAAATTAAATAAAGAATGG+AGG | + | chr7_1:15548952-15548971 | None:intergenic | 15.0% |
| !! | TTCTATGTAGTTATTTAAAT+CGG | - | chr7_1:15549327-15549346 | Msa1011370:CDS | 15.0% |
| !! | AGTAAGAAATTAAAAGAAAA+GGG | + | chr7_1:15549508-15549527 | None:intergenic | 15.0% |
| !! | AAGTAAGAAATTAAAAGAAA+AGG | + | chr7_1:15549509-15549528 | None:intergenic | 15.0% |
| !!! | GTTATTTTTTAACTAGTTTA+TGG | - | chr7_1:15549563-15549582 | Msa1011370:CDS | 15.0% |
| !!! | AAAAGTTTTAAAATGTTAGT+AGG | + | chr7_1:15551055-15551074 | None:intergenic | 15.0% |
| !! | ATTAAAATTAGAAGTTGAAA+AGG | + | chr7_1:15551549-15551568 | None:intergenic | 15.0% |
| !!! | TCTTTTAATTTCTTACTTGA+TGG | - | chr7_1:15549511-15549530 | Msa1011370:CDS | 20.0% |
| !!! | CTTTTAATTTCTTACTTGAT+GGG | - | chr7_1:15549512-15549531 | Msa1011370:CDS | 20.0% |
| !!! | TTTTAATTTCTTACTTGATG+GGG | - | chr7_1:15549513-15549532 | Msa1011370:CDS | 20.0% |
| !!! | TTTTAGTCATTTCAGAATAA+AGG | - | chr7_1:15549706-15549725 | Msa1011370:CDS | 20.0% |
| !!! | GATAACAATATATTTTCGAT+AGG | - | chr7_1:15550210-15550229 | Msa1011370:CDS | 20.0% |
| !!! | AGATCAACATATTTTATCAA+TGG | - | chr7_1:15550374-15550393 | Msa1011370:intron | 20.0% |
| !!! | GATCAACATATTTTATCAAT+GGG | - | chr7_1:15550375-15550394 | Msa1011370:intron | 20.0% |
| !!! | TCATTTTTAGCATTAGATTT+TGG | + | chr7_1:15550843-15550862 | None:intergenic | 20.0% |
| !!! | CAACTTGAATGTTTTATTTA+TGG | - | chr7_1:15551774-15551793 | Msa1011370:five_prime_UTR | 20.0% |
| !! | TATTTAATTGAACAAGTTGG+AGG | + | chr7_1:15548261-15548280 | None:intergenic | 25.0% |
| !!! | TAATGCAGATTTTGATTTGA+TGG | - | chr7_1:15548410-15548429 | Msa1011370:CDS | 25.0% |
| !!! | TGTTTGTCTTTGTTTTTTCA+TGG | - | chr7_1:15548560-15548579 | Msa1011370:intron | 25.0% |
| ! | CATAGTAAGTATACTTACTT+TGG | - | chr7_1:15548600-15548619 | Msa1011370:CDS | 25.0% |
| !!! | TTTTTGAATAACGAAGTATC+TGG | - | chr7_1:15548842-15548861 | Msa1011370:intron | 25.0% |
| !!! | ATCTGGTCTATATTTTAAAC+CGG | - | chr7_1:15548859-15548878 | Msa1011370:intron | 25.0% |
| !!! | TATTTTAAACCGGATACATT+AGG | - | chr7_1:15548869-15548888 | Msa1011370:intron | 25.0% |
| ! | TCAAAGCATGCTTAAAAAAA+GGG | + | chr7_1:15548981-15549000 | None:intergenic | 25.0% |
| ! | TTCAAAGCATGCTTAAAAAA+AGG | + | chr7_1:15548982-15549001 | None:intergenic | 25.0% |
| !! | AGTTGATCTTAATGATTTGT+TGG | - | chr7_1:15549020-15549039 | Msa1011370:intron | 25.0% |
| ! | TTTATTTACTGAATTGTGAG+TGG | - | chr7_1:15549043-15549062 | Msa1011370:intron | 25.0% |
| ! | AGTTTATAAATGCATAACTC+TGG | - | chr7_1:15549145-15549164 | Msa1011370:CDS | 25.0% |
| ! | ATGTAGTTATTTAAATCGGA+AGG | - | chr7_1:15549331-15549350 | Msa1011370:CDS | 25.0% |
| ! | TAAATTCATATCCGATTGAA+GGG | - | chr7_1:15549439-15549458 | Msa1011370:CDS | 25.0% |
| ! | GAAATTAAAAGAAAAGGGAA+AGG | + | chr7_1:15549503-15549522 | None:intergenic | 25.0% |
| !! | TTTAATTTCTTACTTGATGG+GGG | - | chr7_1:15549514-15549533 | Msa1011370:CDS | 25.0% |
| ! | CAATAATATGTCTTCATACA+CGG | - | chr7_1:15549594-15549613 | Msa1011370:CDS | 25.0% |
| !! | TGTCTTCTTTAAAAATGCAT+TGG | - | chr7_1:15549624-15549643 | Msa1011370:CDS | 25.0% |
| ! | AACAATGAATGTTTCTCAAT+GGG | - | chr7_1:15549900-15549919 | Msa1011370:CDS | 25.0% |
| ! | CAAAATTTAGAGATGTTGAA+GGG | + | chr7_1:15550128-15550147 | None:intergenic | 25.0% |
| !! | AACATATTTTATCAATGGGT+CGG | - | chr7_1:15550379-15550398 | Msa1011370:intron | 25.0% |
| ! | GATGGAAATTTCATAACAAT+GGG | - | chr7_1:15550417-15550436 | Msa1011370:intron | 25.0% |
| ! | TAAAAACAAAGAACCAAAGA+CGG | - | chr7_1:15550872-15550891 | Msa1011370:intron | 25.0% |
| !! | ACAAACTTTTGACATTTGAA+GGG | + | chr7_1:15550923-15550942 | None:intergenic | 25.0% |
| !! | AACAAACTTTTGACATTTGA+AGG | + | chr7_1:15550924-15550943 | None:intergenic | 25.0% |
| ! | TAAAATATTGTACATGGTCA+AGG | - | chr7_1:15550973-15550992 | Msa1011370:intron | 25.0% |
| ! | AAAATATTGTACATGGTCAA+GGG | - | chr7_1:15550974-15550993 | Msa1011370:intron | 25.0% |
| !! | AAAACTTTTGATGTTCTCAT+TGG | - | chr7_1:15551066-15551085 | Msa1011370:intron | 25.0% |
| ! | TTGTAGATATGTAACTTCTT+TGG | - | chr7_1:15551687-15551706 | Msa1011370:intron | 25.0% |
| ! | GATTCCATTTTCTCATTTCT+AGG | - | chr7_1:15548305-15548324 | Msa1011370:three_prime_UTR | 30.0% |
| GAAACCTAGAAATGAGAAAA+TGG | + | chr7_1:15548312-15548331 | None:intergenic | 30.0% | |
| ! | ATGTTTCTACGTTTAGAGAA+AGG | - | chr7_1:15548517-15548536 | Msa1011370:intron | 30.0% |
| TATTAGCTGTGTCAATGTAT+CGG | - | chr7_1:15548733-15548752 | Msa1011370:CDS | 30.0% | |
| CATAGGTGGTTATTATTGTA+AGG | - | chr7_1:15548797-15548816 | Msa1011370:intron | 30.0% | |
| CAAAGCATGCTTAAAAAAAG+GGG | + | chr7_1:15548980-15548999 | None:intergenic | 30.0% | |
| CTAAATTCATATCCGATTGA+AGG | - | chr7_1:15549438-15549457 | Msa1011370:CDS | 30.0% | |
| !! | CTTTGTGAATTGTGTTGATT+CGG | - | chr7_1:15549537-15549556 | Msa1011370:CDS | 30.0% |
| AAGATAAGCATTCTAAGCTA+TGG | - | chr7_1:15549679-15549698 | Msa1011370:CDS | 30.0% | |
| CAACAATGAATGTTTCTCAA+TGG | - | chr7_1:15549899-15549918 | Msa1011370:CDS | 30.0% | |
| GATAAAAACATTCCGTCAAT+TGG | - | chr7_1:15550009-15550028 | Msa1011370:CDS | 30.0% | |
| ATATTTCCACTTCCAATTGA+CGG | + | chr7_1:15550024-15550043 | None:intergenic | 30.0% | |
| TGGAAGTGGAAATATAAACA+TGG | - | chr7_1:15550029-15550048 | Msa1011370:CDS | 30.0% | |
| GGAAGTGGAAATATAAACAT+GGG | - | chr7_1:15550030-15550049 | Msa1011370:CDS | 30.0% | |
| !! | AATGATTTTGGGAATCAGTA+TGG | - | chr7_1:15550057-15550076 | Msa1011370:CDS | 30.0% |
| ! | TATGGTAATGATTCGTCTAT+CGG | - | chr7_1:15550075-15550094 | Msa1011370:CDS | 30.0% |
| CCAAAATTTAGAGATGTTGA+AGG | + | chr7_1:15550129-15550148 | None:intergenic | 30.0% | |
| ! | CCTTCAACATCTCTAAATTT+TGG | - | chr7_1:15550126-15550145 | Msa1011370:CDS | 30.0% |
| ! | TCAACATCTCTAAATTTTGG+TGG | - | chr7_1:15550129-15550148 | Msa1011370:CDS | 30.0% |
| !! | CTCTAAATTTTGGTGGTATA+AGG | - | chr7_1:15550136-15550155 | Msa1011370:CDS | 30.0% |
| AATATATTGTTATCAGCTGC+TGG | + | chr7_1:15550204-15550223 | None:intergenic | 30.0% | |
| CGATGGAAATTTCATAACAA+TGG | - | chr7_1:15550416-15550435 | Msa1011370:intron | 30.0% | |
| GATGACAATTTGATATCTCT+AGG | - | chr7_1:15550459-15550478 | Msa1011370:intron | 30.0% | |
| ATGAAAACCTCCAAAAGAAA+TGG | + | chr7_1:15550682-15550701 | None:intergenic | 30.0% | |
| AGAACTATTAATCATTCCAG+TGG | + | chr7_1:15550727-15550746 | None:intergenic | 30.0% | |
| !! | TAATAGTTCTGATCCGTTAA+TGG | - | chr7_1:15550737-15550756 | Msa1011370:intron | 30.0% |
| !! | AATAGTTCTGATCCGTTAAT+GGG | - | chr7_1:15550738-15550757 | Msa1011370:intron | 30.0% |
| !! | TTGTCAACTGGTATTTTTGA+TGG | - | chr7_1:15550942-15550961 | Msa1011370:intron | 30.0% |
| TTCCGGTAAAATATTGTACA+TGG | - | chr7_1:15550967-15550986 | Msa1011370:intron | 30.0% | |
| ! | GACCATGTACAATATTTTAC+CGG | + | chr7_1:15550972-15550991 | None:intergenic | 30.0% |
| AATCTTCAAGGAGTCATAAA+AGG | - | chr7_1:15551095-15551114 | Msa1011370:intron | 30.0% | |
| ! | AATTTTTGCAGATCATTGCT+AGG | + | chr7_1:15551245-15551264 | None:intergenic | 30.0% |
| TCAAAGAATATGTGACTGTT+AGG | + | chr7_1:15551330-15551349 | None:intergenic | 30.0% | |
| ! | AGTCACATATTCTTTGAGAA+TGG | - | chr7_1:15551333-15551352 | Msa1011370:intron | 30.0% |
| GACTTTAATATCTGATGCAA+GGG | + | chr7_1:15551510-15551529 | None:intergenic | 30.0% | |
| TGACTTTAATATCTGATGCA+AGG | + | chr7_1:15551511-15551530 | None:intergenic | 30.0% | |
| GCAAATTACAAGAGAAAGAA+TGG | + | chr7_1:15551830-15551849 | None:intergenic | 30.0% | |
| ! | TTCTTTCTCTTGTAATTTGC+TGG | - | chr7_1:15551830-15551849 | Msa1011370:five_prime_UTR | 30.0% |
| ! | TTCTTCAGTGTCACTATCAA+CGG | - | chr7_1:15548187-15548206 | Msa1011370:three_prime_UTR | 35.0% |
| !! | GTGTAGTTGATCGATTTTGA+AGG | - | chr7_1:15548432-15548451 | Msa1011370:CDS | 35.0% |
| TACTTTGGTCCTATGAATCA+CGG | - | chr7_1:15548615-15548634 | Msa1011370:CDS | 35.0% | |
| ATTCAGTGAAGTATGTGTGT+CGG | + | chr7_1:15548696-15548715 | None:intergenic | 35.0% | |
| CATTGCATACCTAATGTATC+CGG | + | chr7_1:15548881-15548900 | None:intergenic | 35.0% | |
| !! | TTGTTTTGCGAGGTTAAACT+TGG | - | chr7_1:15549170-15549189 | Msa1011370:CDS | 35.0% |
| ! | TGTTTTGCGAGGTTAAACTT+GGG | - | chr7_1:15549171-15549190 | Msa1011370:CDS | 35.0% |
| TGAATGTGTGATGTTAACAG+AGG | - | chr7_1:15549227-15549246 | Msa1011370:CDS | 35.0% | |
| TAAAAGAAAAGGGAAAGGCT+CGG | + | chr7_1:15549498-15549517 | None:intergenic | 35.0% | |
| CATTTCAGAATAAAGGCTTC+TGG | - | chr7_1:15549713-15549732 | Msa1011370:CDS | 35.0% | |
| TGCATAGCTGAAGAAAATGT+TGG | - | chr7_1:15549754-15549773 | Msa1011370:CDS | 35.0% | |
| TTCTTGTTGCTGAACATTTG+AGG | + | chr7_1:15549844-15549863 | None:intergenic | 35.0% | |
| AACAAGAAACAAGCAGTTGA+AGG | - | chr7_1:15549856-15549875 | Msa1011370:CDS | 35.0% | |
| CAAAAAGACGATCAGACAAT+TGG | + | chr7_1:15549957-15549976 | None:intergenic | 35.0% | |
| ! | CAATTGTCTGATCGTCTTTT+TGG | - | chr7_1:15549955-15549974 | Msa1011370:CDS | 35.0% |
| !!! | TTTTTGGATCTGGTCTTGTA+CGG | - | chr7_1:15549971-15549990 | Msa1011370:CDS | 35.0% |
| GTGGAAATATAAACATGGGA+AGG | - | chr7_1:15550034-15550053 | Msa1011370:CDS | 35.0% | |
| ! | AACATGGGAAGGAATGATTT+TGG | - | chr7_1:15550045-15550064 | Msa1011370:CDS | 35.0% |
| ! | ACATGGGAAGGAATGATTTT+GGG | - | chr7_1:15550046-15550065 | Msa1011370:CDS | 35.0% |
| CACTTCCATTGTTATACGTT+GGG | + | chr7_1:15550275-15550294 | None:intergenic | 35.0% | |
| TCACTTCCATTGTTATACGT+TGG | + | chr7_1:15550276-15550295 | None:intergenic | 35.0% | |
| ATGGGTCACATCTTCAATAA+AGG | - | chr7_1:15550309-15550328 | Msa1011370:CDS | 35.0% | |
| TGGGTCACATCTTCAATAAA+GGG | - | chr7_1:15550310-15550329 | Msa1011370:CDS | 35.0% | |
| ACATCTTCAATAAAGGGGAA+GGG | - | chr7_1:15550316-15550335 | Msa1011370:CDS | 35.0% | |
| !!! | GAAGGGAGTTTTTTGTTGAT+GGG | - | chr7_1:15550333-15550352 | Msa1011370:intron | 35.0% |
| ATAACAATGGGTCAGTCATA+TGG | - | chr7_1:15550429-15550448 | Msa1011370:intron | 35.0% | |
| !! | CATGAGAGCATTACATCAAT+GGG | - | chr7_1:15550501-15550520 | Msa1011370:CDS | 35.0% |
| AGTTTCTCCTGATTTACCAT+AGG | + | chr7_1:15550532-15550551 | None:intergenic | 35.0% | |
| AGGAGAAACTTTCACAACTA+TGG | - | chr7_1:15550542-15550561 | Msa1011370:CDS | 35.0% | |
| GTTTGAATCCACCTTATCAT+AGG | + | chr7_1:15550574-15550593 | None:intergenic | 35.0% | |
| ! | ACAATTCCATCTTTTGACAG+CGG | - | chr7_1:15550603-15550622 | Msa1011370:intron | 35.0% |
| !! | TGCTATTTACAGGTGGATTA+GGG | + | chr7_1:15550818-15550837 | None:intergenic | 35.0% |
| !!! | GATTTTGGAGTGCTATTTAC+AGG | + | chr7_1:15550828-15550847 | None:intergenic | 35.0% |
| !! | GTCAAAAGTTTGTTGTCAAC+TGG | - | chr7_1:15550930-15550949 | Msa1011370:intron | 35.0% |
| !! | TGGTATTTTTGATGGCATTC+CGG | - | chr7_1:15550950-15550969 | Msa1011370:intron | 35.0% |
| CATTGGCAGAAAAATCTTCA+AGG | - | chr7_1:15551083-15551102 | Msa1011370:intron | 35.0% | |
| AAGGAGTCATAAAAGGAACT+GGG | - | chr7_1:15551102-15551121 | Msa1011370:intron | 35.0% | |
| TGTTCATGTGATATCTGCAA+GGG | - | chr7_1:15551131-15551150 | Msa1011370:intron | 35.0% | |
| CTGCAAAAATTCTGTCATGA+AGG | - | chr7_1:15551254-15551273 | Msa1011370:intron | 35.0% | |
| !!! | ACTGTTAGGATGTTTTGACT+TGG | + | chr7_1:15551316-15551335 | None:intergenic | 35.0% |
| !! | AAAGTTCCTTTGGTTGATAG+TGG | + | chr7_1:15551442-15551461 | None:intergenic | 35.0% |
| CTTTCGTACTTGGAAATGTA+AGG | - | chr7_1:15551458-15551477 | Msa1011370:intron | 35.0% | |
| GAACATAACCGAACTTATCA+TGG | + | chr7_1:15551650-15551669 | None:intergenic | 35.0% | |
| ! | TAACTTCTTTGGTGTATGAG+TGG | - | chr7_1:15551698-15551717 | Msa1011370:intron | 35.0% |
| ATCTCTCTCTCTCTCTTTGA+AGG | + | chr7_1:15548494-15548513 | None:intergenic | 40.0% | |
| TTCAAAGAGAGAGAGAGAGA+TGG | - | chr7_1:15548493-15548512 | Msa1011370:intron | 40.0% | |
| TATGAATCACGGACACTACT+CGG | - | chr7_1:15548626-15548645 | Msa1011370:CDS | 40.0% | |
| !! | AACTCTGGTATTGTTTTGCG+AGG | - | chr7_1:15549160-15549179 | Msa1011370:CDS | 40.0% |
| ACTTGTGTGCATGCTTGAAA+TGG | - | chr7_1:15549263-15549282 | Msa1011370:CDS | 40.0% | |
| ! | TGCATGCTTGAAATGGATTC+TGG | - | chr7_1:15549270-15549289 | Msa1011370:CDS | 40.0% |
| AACCAAAGAGAAGTCATCAG+TGG | - | chr7_1:15549800-15549819 | Msa1011370:CDS | 40.0% | |
| AACCACTGATGACTTCTCTT+TGG | + | chr7_1:15549805-15549824 | None:intergenic | 40.0% | |
| TTCTCAATGGGAAACCAGTT+CGG | - | chr7_1:15549912-15549931 | Msa1011370:CDS | 40.0% | |
| ! | TCTGATCGTCTTTTTGGATC+TGG | - | chr7_1:15549961-15549980 | Msa1011370:CDS | 40.0% |
| AACATTCCGTCAATTGGAAG+TGG | - | chr7_1:15550015-15550034 | Msa1011370:CDS | 40.0% | |
| TCAGACCCAACGTATAACAA+TGG | - | chr7_1:15550267-15550286 | Msa1011370:CDS | 40.0% | |
| AAGTGACAACACCATTGCTA+TGG | - | chr7_1:15550290-15550309 | Msa1011370:CDS | 40.0% | |
| AGTGACAACACCATTGCTAT+GGG | - | chr7_1:15550291-15550310 | Msa1011370:CDS | 40.0% | |
| GGGTCACATCTTCAATAAAG+GGG | - | chr7_1:15550311-15550330 | Msa1011370:CDS | 40.0% | |
| CACATCTTCAATAAAGGGGA+AGG | - | chr7_1:15550315-15550334 | Msa1011370:CDS | 40.0% | |
| !!! | GGAAGGGAGTTTTTTGTTGA+TGG | - | chr7_1:15550332-15550351 | Msa1011370:intron | 40.0% |
| ! | TTGTTGATGGGTCACAATCA+TGG | - | chr7_1:15550345-15550364 | Msa1011370:intron | 40.0% |
| AATGGGTCAGTCATATGGAA+AGG | - | chr7_1:15550434-15550453 | Msa1011370:intron | 40.0% | |
| TCTAGGAACCTCATATTCCA+TGG | - | chr7_1:15550476-15550495 | Msa1011370:intron | 40.0% | |
| CTAGGAACCTCATATTCCAT+GGG | - | chr7_1:15550477-15550496 | Msa1011370:intron | 40.0% | |
| TAGGAACCTCATATTCCATG+GGG | - | chr7_1:15550478-15550497 | Msa1011370:intron | 40.0% | |
| !! | GCATGAGAGCATTACATCAA+TGG | - | chr7_1:15550500-15550519 | Msa1011370:CDS | 40.0% |
| TCTCCTGATTTACCATAGGT+TGG | + | chr7_1:15550528-15550547 | None:intergenic | 40.0% | |
| TATGGCTCCTTCCTATGATA+AGG | - | chr7_1:15550560-15550579 | Msa1011370:CDS | 40.0% | |
| GAATCCACCTTATCATAGGA+AGG | + | chr7_1:15550570-15550589 | None:intergenic | 40.0% | |
| !!! | TTACTCAGGTTTTGACTCAC+AGG | + | chr7_1:15550645-15550664 | None:intergenic | 40.0% |
| AACTGCTGTGACAATTACTC+AGG | + | chr7_1:15550659-15550678 | None:intergenic | 40.0% | |
| ! | CACAGCAGTTCCATTTCTTT+TGG | - | chr7_1:15550669-15550688 | Msa1011370:intron | 40.0% |
| ! | AGCAGTTCCATTTCTTTTGG+AGG | - | chr7_1:15550672-15550691 | Msa1011370:intron | 40.0% |
| TTGATTCACTCAGATCCTTC+TGG | + | chr7_1:15550794-15550813 | None:intergenic | 40.0% | |
| !! | GTGCTATTTACAGGTGGATT+AGG | + | chr7_1:15550819-15550838 | None:intergenic | 40.0% |
| !! | TTTGGAGTGCTATTTACAGG+TGG | + | chr7_1:15550825-15550844 | None:intergenic | 40.0% |
| ATATTGTACATGGTCAAGGG+AGG | - | chr7_1:15550977-15550996 | Msa1011370:intron | 40.0% | |
| CAAGGAGTCATAAAAGGAAC+TGG | - | chr7_1:15551101-15551120 | Msa1011370:intron | 40.0% | |
| TGCAGATATCACATGAACAC+AGG | + | chr7_1:15551130-15551149 | None:intergenic | 40.0% | |
| GTGTTCATGTGATATCTGCA+AGG | - | chr7_1:15551130-15551149 | Msa1011370:intron | 40.0% | |
| GTTCATGTGATATCTGCAAG+GGG | - | chr7_1:15551132-15551151 | Msa1011370:intron | 40.0% | |
| TATGCATGAGCACTATTGCT+AGG | + | chr7_1:15551207-15551226 | None:intergenic | 40.0% | |
| CTCTTGAACAACAGCATAGA+CGG | + | chr7_1:15551364-15551383 | None:intergenic | 40.0% | |
| GATGCTATTCAAACTGTGAC+AGG | - | chr7_1:15551414-15551433 | Msa1011370:intron | 40.0% | |
| ACCAAAGGAACTTTCGTACT+TGG | - | chr7_1:15551448-15551467 | Msa1011370:intron | 40.0% | |
| TCCAAGTACGAAAGTTCCTT+TGG | + | chr7_1:15551452-15551471 | None:intergenic | 40.0% | |
| TTGGTATGATGCTGAAAAGG+AGG | + | chr7_1:15551579-15551598 | None:intergenic | 40.0% | |
| AGCTTGGTATGATGCTGAAA+AGG | + | chr7_1:15551582-15551601 | None:intergenic | 40.0% | |
| AGCTGCTACCATGATAAGTT+CGG | - | chr7_1:15551639-15551658 | Msa1011370:intron | 40.0% | |
| ! | TTCAGTGTCACTATCAACGG+CGG | - | chr7_1:15548190-15548209 | Msa1011370:three_prime_UTR | 45.0% |
| AAATTCTCCGGCGTTAGTTC+CGG | - | chr7_1:15548228-15548247 | Msa1011370:three_prime_UTR | 45.0% | |
| GAGTAGTGTCCGTGATTCAT+AGG | + | chr7_1:15548627-15548646 | None:intergenic | 45.0% | |
| ATGAATCACGGACACTACTC+GGG | - | chr7_1:15548627-15548646 | Msa1011370:CDS | 45.0% | |
| TAAGACGAGAGCCCTTCAAT+CGG | + | chr7_1:15549453-15549472 | None:intergenic | 45.0% | |
| AAGGGCTCTCGTCTTAAGAA+AGG | - | chr7_1:15549457-15549476 | Msa1011370:CDS | 45.0% | |
| !! | AATAAAGGCTTCTGGAGTCC+CGG | - | chr7_1:15549721-15549740 | Msa1011370:CDS | 45.0% |
| AGCTATGCAACCAACTTCTC+CGG | + | chr7_1:15549743-15549762 | None:intergenic | 45.0% | |
| GAGAAGTCATCAGTGGTTTG+TGG | - | chr7_1:15549807-15549826 | Msa1011370:CDS | 45.0% | |
| !! | CAGTTGAAGGTGTTAGTGAC+AGG | - | chr7_1:15549869-15549888 | Msa1011370:CDS | 45.0% |
| TCTCAATGGGAAACCAGTTC+GGG | - | chr7_1:15549913-15549932 | Msa1011370:CDS | 45.0% | |
| CTGTCAATGTCTCATTCCAC+AGG | - | chr7_1:15550099-15550118 | Msa1011370:CDS | 45.0% | |
| TCAATGTCTCATTCCACAGG+AGG | - | chr7_1:15550102-15550121 | Msa1011370:CDS | 45.0% | |
| CAAGTCAGAGATTCTGACCA+TGG | - | chr7_1:15550174-15550193 | Msa1011370:CDS | 45.0% | |
| GAAGATGTGACCCATAGCAA+TGG | + | chr7_1:15550304-15550323 | None:intergenic | 45.0% | |
| ACATCAATGGGTCCAACCTA+TGG | - | chr7_1:15550513-15550532 | Msa1011370:CDS | 45.0% | |
| GGTCCAACCTATGGTAAATC+AGG | - | chr7_1:15550522-15550541 | Msa1011370:CDS | 45.0% | |
| CAGTGGAGTCATTCAGTTGA+GGG | + | chr7_1:15550710-15550729 | None:intergenic | 45.0% | |
| ! | GAGTTCTGGTTGCCCATTAA+CGG | + | chr7_1:15550753-15550772 | None:intergenic | 45.0% |
| GAAGGGAAGCTGTTAGTAGA+AGG | + | chr7_1:15550906-15550925 | None:intergenic | 45.0% | |
| TGATATCTGCAAGGGGCAAA+AGG | - | chr7_1:15551139-15551158 | Msa1011370:intron | 45.0% | |
| TATGAATTTGAGCGTCACGC+TGG | - | chr7_1:15551288-15551307 | Msa1011370:intron | 45.0% | |
| ATGAATTTGAGCGTCACGCT+GGG | - | chr7_1:15551289-15551308 | Msa1011370:intron | 45.0% | |
| AGAGCTGAAAAACAGTCCTC+AGG | - | chr7_1:15551380-15551399 | Msa1011370:intron | 45.0% | |
| !! | GCATCAAAAAGCATCTCCTG+AGG | + | chr7_1:15551399-15551418 | None:intergenic | 45.0% |
| !! | TAAAAAAATTAAATAAAGAA+TGG | + | chr7_1:15548955-15548974 | None:intergenic | 5.0% |
| ATGAAGCACAGCTACGGACA+CGG | + | chr7_1:15548780-15548799 | None:intergenic | 50.0% | |
| TGTCCGTAGCTGTGCTTCAT+AGG | - | chr7_1:15548780-15548799 | Msa1011370:intron | 50.0% | |
| CCACCTATGAAGCACAGCTA+CGG | + | chr7_1:15548786-15548805 | None:intergenic | 50.0% | |
| GCTATGCAACCAACTTCTCC+GGG | + | chr7_1:15549742-15549761 | None:intergenic | 50.0% | |
| CAGACAATTGGCCAGTGACT+GGG | + | chr7_1:15549945-15549964 | None:intergenic | 50.0% | |
| TCAGACAATTGGCCAGTGAC+TGG | + | chr7_1:15549946-15549965 | None:intergenic | 50.0% | |
| GATGGGTCACAATCATGGCA+AGG | - | chr7_1:15550350-15550369 | Msa1011370:intron | 50.0% | |
| AATGGGTCGGTCCTTTGACA+GGG | - | chr7_1:15550392-15550411 | Msa1011370:intron | 50.0% | |
| ATTTCCATCGCCCCTGTCAA+AGG | + | chr7_1:15550406-15550425 | None:intergenic | 50.0% | |
| CTCATGCCCCATGGAATATG+AGG | + | chr7_1:15550487-15550506 | None:intergenic | 50.0% | |
| TGTAATGCTCTCATGCCCCA+TGG | + | chr7_1:15550496-15550515 | None:intergenic | 50.0% | |
| GGCTCCTTCCTATGATAAGG+TGG | - | chr7_1:15550563-15550582 | Msa1011370:CDS | 50.0% | |
| GAGTTGCCGCTGTCAAAAGA+TGG | + | chr7_1:15550612-15550631 | None:intergenic | 50.0% | |
| CCAGTGGAGTCATTCAGTTG+AGG | + | chr7_1:15550711-15550730 | None:intergenic | 50.0% | |
| CCTCAACTGAATGACTCCAC+TGG | - | chr7_1:15550708-15550727 | Msa1011370:intron | 50.0% | |
| CAACACCTTGAGCTGAGTTC+TGG | + | chr7_1:15550767-15550786 | None:intergenic | 50.0% | |
| !! | TCAAGGTGTTGACAGCCAGA+AGG | - | chr7_1:15550776-15550795 | Msa1011370:intron | 50.0% |
| !!! | GAAGGCTTTTTCGCCGTCTT+TGG | + | chr7_1:15550888-15550907 | None:intergenic | 50.0% |
| TGAATTTGAGCGTCACGCTG+GGG | - | chr7_1:15551290-15551309 | Msa1011370:intron | 50.0% | |
| CAGGAGCCACTATCAACCAA+AGG | - | chr7_1:15551433-15551452 | Msa1011370:intron | 50.0% | |
| ! | TCTGATGCAAGGGTGTGCTT+GGG | + | chr7_1:15551500-15551519 | None:intergenic | 50.0% |
| ! | ATCTGATGCAAGGGTGTGCT+TGG | + | chr7_1:15551501-15551520 | None:intergenic | 50.0% |
| GAAGCTCAAGAGTAGCAGCT+TGG | + | chr7_1:15551598-15551617 | None:intergenic | 50.0% | |
| CTTGAGCTTCAGCGCATCTA+TGG | - | chr7_1:15551608-15551627 | Msa1011370:five_prime_UTR | 50.0% | |
| GCTTCAGCGCATCTATGGAA+AGG | - | chr7_1:15551613-15551632 | Msa1011370:five_prime_UTR | 50.0% | |
| AACGCCGGAGAATTTCCCGA+CGG | + | chr7_1:15548223-15548242 | None:intergenic | 55.0% | |
| TCCGGCGTTAGTTCCGGTTT+GGG | - | chr7_1:15548234-15548253 | Msa1011370:three_prime_UTR | 55.0% | |
| ! | ACAAGTTGGAGGCCCCAAAC+CGG | + | chr7_1:15548250-15548269 | None:intergenic | 55.0% |
| TCACGGACACTACTCGGGTT+AGG | - | chr7_1:15548632-15548651 | Msa1011370:CDS | 55.0% | |
| CACGGACATTGGACACGACA+CGG | + | chr7_1:15548762-15548781 | None:intergenic | 55.0% | |
| ACAGCTACGGACACGGACAT+TGG | + | chr7_1:15548773-15548792 | None:intergenic | 55.0% | |
| CCGTAGCTGTGCTTCATAGG+TGG | - | chr7_1:15548783-15548802 | Msa1011370:intron | 55.0% | |
| GGAAAGGCTCGGAAGACAGA+TGG | + | chr7_1:15549487-15549506 | None:intergenic | 55.0% | |
| !! | TTCTGGAGTCCCGGAGAAGT+TGG | - | chr7_1:15549730-15549749 | Msa1011370:CDS | 55.0% |
| GACTGGGTGAAATCCCGAAC+TGG | + | chr7_1:15549929-15549948 | None:intergenic | 55.0% | |
| TCGGGATTTCACCCAGTCAC+TGG | - | chr7_1:15549931-15549950 | Msa1011370:CDS | 55.0% | |
| AGATGTTGAAGGGCCTCCTG+TGG | + | chr7_1:15550118-15550137 | None:intergenic | 55.0% | |
| CAATGGGTCGGTCCTTTGAC+AGG | - | chr7_1:15550391-15550410 | Msa1011370:intron | 55.0% | |
| ATGGGTCGGTCCTTTGACAG+GGG | - | chr7_1:15550393-15550412 | Msa1011370:intron | 55.0% | |
| GGCAACCAGAACTCAGCTCA+AGG | - | chr7_1:15550759-15550778 | Msa1011370:intron | 55.0% | |
| GCCACCGTCGGGAAATTCTC+CGG | - | chr7_1:15548216-15548235 | Msa1011370:three_prime_UTR | 60.0% | |
| CTCCGGCGTTAGTTCCGGTT+TGG | - | chr7_1:15548233-15548252 | Msa1011370:three_prime_UTR | 60.0% | |
| CCCCAAACCGGAACTAACGC+CGG | + | chr7_1:15548238-15548257 | None:intergenic | 60.0% | |
| ! | CCGGCGTTAGTTCCGGTTTG+GGG | - | chr7_1:15548235-15548254 | Msa1011370:three_prime_UTR | 60.0% |
| TATCAGCTGCTGGCGTGCCA+TGG | + | chr7_1:15550194-15550213 | None:intergenic | 60.0% | |
| GCCGGAGAATTTCCCGACGG+TGG | + | chr7_1:15548220-15548239 | None:intergenic | 65.0% | |
| CGGTCCTTTGACAGGGGCGA+TGG | - | chr7_1:15550399-15550418 | Msa1011370:intron | 65.0% | |
| ! | CAACGGCGGAGCGCCACCGT+CGG | - | chr7_1:15548204-15548223 | Msa1011370:three_prime_UTR | 75.0% |
| ! | AACGGCGGAGCGCCACCGTC+GGG | - | chr7_1:15548205-15548224 | Msa1011370:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 15548166 | 15551885 | 15548166 | ID=Msa1011370;Name=Msa1011370 |
| chr7_1 | mRNA | 15548166 | 15551885 | 15548166 | ID=Msa1011370-mRNA-1;Parent=Msa1011370;Name=Msa1011370-mRNA-1;_AED=0.09;_eAED=0.09;_QI=201|0.66|0.85|0.85|0.66|0.57|7|233|591 |
| chr7_1 | exon | 15548166 | 15548463 | 15548166 | ID=Msa1011370-mRNA-1:exon:4032;Parent=Msa1011370-mRNA-1 |
| chr7_1 | exon | 15548577 | 15548775 | 15548577 | ID=Msa1011370-mRNA-1:exon:4031;Parent=Msa1011370-mRNA-1 |
| chr7_1 | exon | 15548891 | 15548959 | 15548891 | ID=Msa1011370-mRNA-1:exon:4030;Parent=Msa1011370-mRNA-1 |
| chr7_1 | exon | 15549053 | 15550339 | 15549053 | ID=Msa1011370-mRNA-1:exon:4029;Parent=Msa1011370-mRNA-1 |
| chr7_1 | exon | 15550493 | 15550591 | 15550493 | ID=Msa1011370-mRNA-1:exon:4028;Parent=Msa1011370-mRNA-1 |
| chr7_1 | exon | 15551537 | 15551633 | 15551537 | ID=Msa1011370-mRNA-1:exon:4027;Parent=Msa1011370-mRNA-1 |
| chr7_1 | exon | 15551725 | 15551885 | 15551725 | ID=Msa1011370-mRNA-1:exon:4026;Parent=Msa1011370-mRNA-1 |
| chr7_1 | five_prime_UTR | 15551725 | 15551885 | 15551725 | ID=Msa1011370-mRNA-1:five_prime_utr;Parent=Msa1011370-mRNA-1 |
| chr7_1 | five_prime_UTR | 15551594 | 15551633 | 15551594 | ID=Msa1011370-mRNA-1:five_prime_utr;Parent=Msa1011370-mRNA-1 |
| chr7_1 | CDS | 15551537 | 15551593 | 15551537 | ID=Msa1011370-mRNA-1:cds;Parent=Msa1011370-mRNA-1 |
| chr7_1 | CDS | 15550493 | 15550591 | 15550493 | ID=Msa1011370-mRNA-1:cds;Parent=Msa1011370-mRNA-1 |
| chr7_1 | CDS | 15549053 | 15550339 | 15549053 | ID=Msa1011370-mRNA-1:cds;Parent=Msa1011370-mRNA-1 |
| chr7_1 | CDS | 15548891 | 15548959 | 15548891 | ID=Msa1011370-mRNA-1:cds;Parent=Msa1011370-mRNA-1 |
| chr7_1 | CDS | 15548577 | 15548775 | 15548577 | ID=Msa1011370-mRNA-1:cds;Parent=Msa1011370-mRNA-1 |
| chr7_1 | CDS | 15548399 | 15548463 | 15548399 | ID=Msa1011370-mRNA-1:cds;Parent=Msa1011370-mRNA-1 |
| chr7_1 | three_prime_UTR | 15548166 | 15548398 | 15548166 | ID=Msa1011370-mRNA-1:three_prime_utr;Parent=Msa1011370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
