Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534270 | XP_003604797.1 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 9.79e-126 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534270 | G7JR81 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 4.68e-126 | 361 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022470 | Msa0534270 | 0.833442 | 5.320129e-56 | -8.615850e-47 |
| Msa0030800 | Msa0534270 | 0.807068 | 6.053922e-50 | -8.615850e-47 |
| Msa0037760 | Msa0534270 | 0.818710 | 1.700828e-52 | -8.615850e-47 |
| Msa0043740 | Msa0534270 | 0.823601 | 1.268409e-53 | -8.615850e-47 |
| Msa0059440 | Msa0534270 | 0.807021 | 6.193555e-50 | -8.615850e-47 |
| Msa0090090 | Msa0534270 | 0.831087 | 2.036663e-55 | -8.615850e-47 |
| Msa0090380 | Msa0534270 | 0.836486 | 9.096897e-57 | -8.615850e-47 |
| Msa0092970 | Msa0534270 | 0.817642 | 2.965697e-52 | -8.615850e-47 |
| Msa0104810 | Msa0534270 | 0.819054 | 1.420705e-52 | -8.615850e-47 |
| Msa0118010 | Msa0534270 | 0.806200 | 9.234132e-50 | -8.615850e-47 |
| Msa0119430 | Msa0534270 | 0.818976 | 1.479328e-52 | -8.615850e-47 |
| Msa0137560 | Msa0534270 | 0.833067 | 6.598368e-56 | -8.615850e-47 |
| Msa0137860 | Msa0534270 | 0.829572 | 4.775308e-55 | -8.615850e-47 |
| Msa0139680 | Msa0534270 | 0.812737 | 3.647798e-51 | -8.615850e-47 |
| Msa0150620 | Msa0534270 | 0.825431 | 4.705086e-54 | -8.615850e-47 |
| Msa0162680 | Msa0534270 | 0.822475 | 2.322899e-53 | -8.615850e-47 |
| Msa0170600 | Msa0534270 | 0.804901 | 1.729157e-49 | -8.615850e-47 |
| Msa0170770 | Msa0534270 | 0.858943 | 5.820093e-63 | -8.615850e-47 |
| Msa0182560 | Msa0534270 | 0.808066 | 3.717565e-50 | -8.615850e-47 |
| Msa0185100 | Msa0534270 | 0.803152 | 3.995415e-49 | -8.615850e-47 |
| Msa0193190 | Msa0534270 | 0.822352 | 2.480256e-53 | -8.615850e-47 |
| Msa0393100 | Msa0534270 | 0.809690 | 1.670607e-50 | -8.615850e-47 |
| Msa0443450 | Msa0534270 | 0.819170 | 1.336803e-52 | -8.615850e-47 |
| Msa0476770 | Msa0534270 | 0.814322 | 1.634125e-51 | -8.615850e-47 |
| Msa0264680 | Msa0534270 | 0.811626 | 6.372652e-51 | -8.615850e-47 |
| Msa0273070 | Msa0534270 | 0.809788 | 1.590984e-50 | -8.615850e-47 |
| Msa0296900 | Msa0534270 | 0.800899 | 1.160592e-48 | -8.615850e-47 |
| Msa0302730 | Msa0534270 | 0.821909 | 3.142369e-53 | -8.615850e-47 |
| Msa0306310 | Msa0534270 | 0.822982 | 1.770192e-53 | -8.615850e-47 |
| Msa0307420 | Msa0534270 | 0.802135 | 6.476905e-49 | -8.615850e-47 |
| Msa0335080 | Msa0534270 | 0.817319 | 3.507940e-52 | -8.615850e-47 |
| Msa0345980 | Msa0534270 | 0.815996 | 6.942368e-52 | -8.615850e-47 |
| Msa0488580 | Msa0534270 | 0.840568 | 8.041474e-58 | -8.615850e-47 |
| Msa0534270 | Msa0588710 | 0.802141 | 6.459689e-49 | -8.615850e-47 |
| Msa0534270 | Msa0590390 | 0.865978 | 3.987251e-65 | -8.615850e-47 |
| Msa0534270 | Msa0592660 | 0.817878 | 2.623710e-52 | -8.615850e-47 |
| Msa0534270 | Msa0611060 | 0.816318 | 5.881388e-52 | -8.615850e-47 |
| Msa0534270 | Msa0615210 | 0.815259 | 1.013421e-51 | -8.615850e-47 |
| Msa0534270 | Msa0619310 | 0.800953 | 1.131431e-48 | -8.615850e-47 |
| Msa0534270 | Msa0650560 | 0.800998 | 1.107673e-48 | -8.615850e-47 |
| Msa0534270 | Msa0662460 | 0.803831 | 2.889299e-49 | -8.615850e-47 |
| Msa0534270 | Msa0685240 | 0.803689 | 3.092086e-49 | -8.615850e-47 |
| Msa0534270 | Msa0709140 | 0.809429 | 1.900520e-50 | -8.615850e-47 |
| Msa0534270 | Msa0740630 | 0.815054 | 1.125062e-51 | -8.615850e-47 |
| Msa0534270 | Msa0753930 | 0.800262 | 1.565334e-48 | -8.615850e-47 |
| Msa0534270 | Msa0758570 | 0.800705 | 1.271692e-48 | -8.615850e-47 |
| Msa0534270 | Msa0790920 | 0.833383 | 5.504831e-56 | -8.615850e-47 |
| Msa0534270 | Msa0804870 | 0.830086 | 3.580241e-55 | -8.615850e-47 |
| Msa0534270 | Msa0820880 | 0.818717 | 1.694599e-52 | -8.615850e-47 |
| Msa0534270 | Msa0832950 | 0.828383 | 9.270511e-55 | -8.615850e-47 |
| Msa0534270 | Msa0838870 | 0.823673 | 1.220242e-53 | -8.615850e-47 |
| Msa0534270 | Msa0859040 | 0.807325 | 5.341896e-50 | -8.615850e-47 |
| Msa0534270 | Msa0945130 | 0.814259 | 1.687698e-51 | -8.615850e-47 |
| Msa0534270 | Msa1025750 | 0.818815 | 1.609614e-52 | -8.615850e-47 |
| Msa0534270 | Msa1030210 | 0.807849 | 4.133337e-50 | -8.615850e-47 |
| Msa0534270 | Msa1030240 | 0.803229 | 3.851531e-49 | -8.615850e-47 |
| Msa0534270 | Msa1034450 | 0.820262 | 7.528465e-53 | -8.615850e-47 |
| Msa0534270 | Msa1074200 | 0.825135 | 5.527341e-54 | -8.615850e-47 |
| Msa0534270 | Msa1084890 | 0.800375 | 1.484549e-48 | -8.615850e-47 |
| Msa0534270 | Msa1089190 | 0.805078 | 1.588227e-49 | -8.615850e-47 |
| Msa0534270 | Msa1089600 | 0.815604 | 8.488838e-52 | -8.615850e-47 |
| Msa0534270 | Msa1109670 | 0.814793 | 1.285460e-51 | -8.615850e-47 |
| Msa0534270 | Msa1114670 | 0.857026 | 2.159709e-62 | -8.615850e-47 |
| Msa0534270 | Msa1120580 | 0.836474 | 9.162153e-57 | -8.615850e-47 |
| Msa0534270 | Msa1131790 | 0.800830 | 1.198769e-48 | -8.615850e-47 |
| Msa0534270 | Msa1132980 | 0.803071 | 4.152371e-49 | -8.615850e-47 |
| Msa0534270 | Msa1133700 | 0.809891 | 1.512167e-50 | -8.615850e-47 |
| Msa0534270 | Msa1136760 | 0.814891 | 1.223173e-51 | -8.615850e-47 |
| Msa0534270 | Msa1157110 | 0.835633 | 1.497519e-56 | -8.615850e-47 |
| Msa0534270 | Msa1159170 | 0.862674 | 4.286844e-64 | -8.615850e-47 |
| Msa0534270 | Msa1171450 | 0.803772 | 2.972536e-49 | -8.615850e-47 |
| Msa0534270 | Msa1221220 | 0.809992 | 1.438190e-50 | -8.615850e-47 |
| Msa0534270 | Msa1225580 | 0.819023 | 1.443561e-52 | -8.615850e-47 |
| Msa0534270 | Msa1276960 | 0.819544 | 1.098797e-52 | -8.615850e-47 |
| Msa0534270 | Msa1307530 | 0.810094 | 1.367183e-50 | -8.615850e-47 |
| Msa0534270 | Msa1355510 | 0.812690 | 3.734105e-51 | -8.615850e-47 |
| Msa0534270 | Msa1362850 | 0.804793 | 1.821269e-49 | -8.615850e-47 |
| Msa0534270 | Msa1413800 | 0.819698 | 1.013114e-52 | -8.615850e-47 |
| Msa0534270 | Msa1433410 | 0.835583 | 1.541992e-56 | -8.615850e-47 |
| Msa0534270 | Msa1435320 | 0.822771 | 1.981829e-53 | -8.615850e-47 |
| Msa0534270 | Msa1436090 | 0.815890 | 7.332713e-52 | -8.615850e-47 |
| Msa0534270 | Msa1438160 | 0.801091 | 1.060454e-48 | -8.615850e-47 |
| Msa0534270 | Msa1443400 | 0.822703 | 2.055181e-53 | -8.615850e-47 |
| Msa0534270 | Msa1443620 | 0.812945 | 3.284465e-51 | -8.615850e-47 |
| Msa0534270 | Msa1447870 | 0.804487 | 2.110268e-49 | -8.615850e-47 |
| Msa0534270 | Msa1448040 | 0.821756 | 3.409644e-53 | -8.615850e-47 |
| Msa0534270 | Msa1451990 | 0.824630 | 7.273168e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534270 | MtrunA17_Chr4g0008141 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 9.01e-130 | 361 |
| Msa0534270 | MtrunA17_Chr4g0008131 | 84.615 | 169 | 26 | 0 | 1 | 169 | 1 | 169 | 1.01e-105 | 301 |
| Msa0534270 | MtrunA17_Chr4g0008121 | 82.682 | 179 | 31 | 0 | 1 | 179 | 1 | 179 | 9.60e-102 | 291 |
| Msa0534270 | MtrunA17_Chr7g0241061 | 66.854 | 178 | 59 | 0 | 1 | 178 | 1 | 178 | 2.51e-88 | 256 |
| Msa0534270 | MtrunA17_Chr6g0472041 | 51.553 | 161 | 77 | 1 | 6 | 165 | 3 | 163 | 2.95e-57 | 178 |
| Msa0534270 | MtrunA17_Chr1g0203171 | 52.795 | 161 | 75 | 1 | 7 | 166 | 10 | 170 | 4.61e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534270 | AT3G54040.1 | 54.011 | 187 | 76 | 5 | 1 | 181 | 1 | 183 | 1.16e-63 | 194 |
| Msa0534270 | AT3G54040.2 | 54.011 | 187 | 76 | 5 | 1 | 181 | 57 | 239 | 3.22e-63 | 195 |
| Msa0534270 | AT5G52390.1 | 44.571 | 175 | 95 | 1 | 7 | 179 | 8 | 182 | 3.07e-50 | 160 |
Find 53 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTCTTCTCAGTAATTT+TGG | 0.107847 | 4_1:-9646223 | Msa0534270:exon |
| ATTCTCCAATTATCAAATTT+TGG | 0.153083 | 4_1:-9646019 | Msa0534270:three_prime_UTR |
| TAATTCCAAAATTTGATAAT+TGG | 0.176986 | 4_1:+9646014 | None:intergenic |
| GAAGGTATAGTTTGGGAAAA+TGG | 0.255674 | 4_1:+9647855 | None:intergenic |
| TTTCTCATCCATGCATCTTT+AGG | 0.256802 | 4_1:-9647777 | Msa0534270:intron |
| AAAATGGAGAAATTGTATTT+AGG | 0.279897 | 4_1:+9647871 | None:intergenic |
| AAGAAAAGGTCAACAATGTT+AGG | 0.281319 | 4_1:+9647334 | None:intergenic |
| TTGTGTTTCTCACATAGTTC+TGG | 0.301659 | 4_1:+9646347 | None:intergenic |
| GTGAGCTCCGGAGCTGCATT+TGG | 0.320930 | 4_1:-9646293 | Msa0534270:CDS |
| GAGAAAGTACACACTTCTTT+TGG | 0.330826 | 4_1:+9647595 | None:intergenic |
| TTTGGAATTATTTCTACTCT+TGG | 0.340158 | 4_1:-9646001 | Msa0534270:three_prime_UTR |
| TAATAGAACCAATGATAGTT+TGG | 0.354031 | 4_1:+9647809 | None:intergenic |
| TTTCTCAACCAAACTATCAT+TGG | 0.356030 | 4_1:-9647817 | Msa0534270:CDS |
| TTGTAAATGAAGGTATAGTT+TGG | 0.361334 | 4_1:+9647847 | None:intergenic |
| GATATATAGAGGGAAATATA+TGG | 0.386461 | 4_1:-9646138 | Msa0534270:three_prime_UTR |
| ATCTGGAAAGAGATGTTTGT+TGG | 0.389390 | 4_1:-9647563 | Msa0534270:CDS |
| TGTAAATGAAGGTATAGTTT+GGG | 0.415714 | 4_1:+9647848 | None:intergenic |
| GAAATTGTATTTAGGAAAGA+AGG | 0.418454 | 4_1:+9647879 | None:intergenic |
| TGTTTGTTGGAGACTCAAAA+AGG | 0.420286 | 4_1:-9647550 | Msa0534270:CDS |
| TGTAATAATCAAGTTGAGTT+GGG | 0.422661 | 4_1:-9646085 | Msa0534270:three_prime_UTR |
| ACTTTCTCAGTAGCTTCATC+TGG | 0.424996 | 4_1:-9647580 | Msa0534270:CDS |
| AGCGGGGCCAAATGCAGCTC+CGG | 0.448289 | 4_1:+9646286 | None:intergenic |
| CAGCAGCCATATTGAAGAAA+AGG | 0.460023 | 4_1:+9647320 | None:intergenic |
| CTCCAAAATTACTGAGAAGA+AGG | 0.460063 | 4_1:+9646221 | None:intergenic |
| TTCTTTGAGCCACAATTCAC+TGG | 0.461563 | 4_1:-9647391 | Msa0534270:CDS |
| TTCAATATGGCTGCTGGAGA+GGG | 0.471243 | 4_1:-9647313 | Msa0534270:intron |
| TCCTCTGAAACTGAAGAAGC+GGG | 0.487005 | 4_1:+9646269 | None:intergenic |
| CTATAGTAGAGGATATATAG+AGG | 0.488277 | 4_1:-9646149 | Msa0534270:three_prime_UTR |
| TAGAACATCTGAAGTTATAG+TGG | 0.488747 | 4_1:-9647500 | Msa0534270:CDS |
| ATGTAATAATCAAGTTGAGT+TGG | 0.497257 | 4_1:-9646086 | Msa0534270:three_prime_UTR |
| AAAGACATGGTTGTAAATGA+AGG | 0.499284 | 4_1:+9647837 | None:intergenic |
| CTTCAATATGGCTGCTGGAG+AGG | 0.505716 | 4_1:-9647314 | Msa0534270:CDS |
| ATGGTCGAGCTTGTGAGCTC+CGG | 0.514705 | 4_1:-9646305 | Msa0534270:CDS |
| CCCCGCTTCTTCAGTTTCAG+AGG | 0.514848 | 4_1:-9646270 | Msa0534270:CDS |
| AGAAAAGGTCAACAATGTTA+GGG | 0.524892 | 4_1:+9647335 | None:intergenic |
| TGAGAAGAAGGTGCAGCTGC+AGG | 0.526134 | 4_1:+9646233 | None:intergenic |
| GAGCAACCCTCGTCGTGCTA+TGG | 0.529620 | 4_1:-9646324 | Msa0534270:CDS |
| GTCCTCTGAAACTGAAGAAG+CGG | 0.537628 | 4_1:+9646268 | None:intergenic |
| TCCTATGTTTACTATAGTAG+AGG | 0.567624 | 4_1:-9646160 | Msa0534270:three_prime_UTR |
| TATAGTAGAGGATATATAGA+GGG | 0.575325 | 4_1:-9646148 | Msa0534270:three_prime_UTR |
| TATACATACCTAAAGATGCA+TGG | 0.589615 | 4_1:+9647769 | None:intergenic |
| TCCTCTACTATAGTAAACAT+AGG | 0.591635 | 4_1:+9646159 | None:intergenic |
| TGCAGCTGAAATGGCATGTG+AGG | 0.591747 | 4_1:-9647623 | Msa0534270:intron |
| CAAAGTTTGCCAGTGAATTG+TGG | 0.594692 | 4_1:+9647382 | None:intergenic |
| TAACTTCAGATGTTCTACAT+TGG | 0.599440 | 4_1:+9647506 | None:intergenic |
| GGTGTTGATAGAAGTTCTGT+TGG | 0.610517 | 4_1:-9647430 | Msa0534270:CDS |
| TCAAAACAAATTCAATAACA+AGG | 0.649748 | 4_1:+9646112 | None:intergenic |
| AGCTCGACCATAGCACGACG+AGG | 0.664011 | 4_1:+9646317 | None:intergenic |
| CATTGAGACAGATCAATGTG+TGG | 0.689961 | 4_1:-9647461 | Msa0534270:CDS |
| GCTCGACCATAGCACGACGA+GGG | 0.698174 | 4_1:+9646318 | None:intergenic |
| TAGTTTGGTTGAGAAAGACA+TGG | 0.702010 | 4_1:+9647824 | None:intergenic |
| CCTCTGAAACTGAAGAAGCG+GGG | 0.706772 | 4_1:+9646270 | None:intergenic |
| GATCAATGTGTGGAAGCATG+TGG | 0.719153 | 4_1:-9647451 | Msa0534270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGTATAATTATATATGT+TGG | - | chr4_1:9646821-9646840 | Msa0534270:intron | 10.0% |
| !!! | TTTGAAGTTAAAATATTTTA+TGG | + | chr4_1:9647328-9647347 | None:intergenic | 10.0% |
| !! | TTTAGTATAATTATATATGT+TGG | - | chr4_1:9646821-9646840 | Msa0534270:intron | 10.0% |
| !!! | TTTGAAGTTAAAATATTTTA+TGG | + | chr4_1:9647328-9647347 | None:intergenic | 10.0% |
| !!! | TTAGTTGTTTATTTTTTTCT+TGG | - | chr4_1:9646206-9646225 | Msa0534270:three_prime_UTR | 15.0% |
| !!! | TCACATTGATTTTTTTTAAT+CGG | + | chr4_1:9647018-9647037 | None:intergenic | 15.0% |
| !!! | TAATTCCAAAATTTGATAAT+TGG | + | chr4_1:9647885-9647904 | None:intergenic | 15.0% |
| !!! | TTAGTTGTTTATTTTTTTCT+TGG | - | chr4_1:9646206-9646225 | Msa0534270:three_prime_UTR | 15.0% |
| !!! | TCACATTGATTTTTTTTAAT+CGG | + | chr4_1:9647018-9647037 | None:intergenic | 15.0% |
| !!! | TAATTCCAAAATTTGATAAT+TGG | + | chr4_1:9647885-9647904 | None:intergenic | 15.0% |
| !! | AAAATGGAGAAATTGTATTT+AGG | + | chr4_1:9646028-9646047 | None:intergenic | 20.0% |
| !! | ATTGTAGATATTGGAAAATT+TGG | + | chr4_1:9647094-9647113 | None:intergenic | 20.0% |
| !!! | TTTTCCAATATCTACAATTT+TGG | - | chr4_1:9647096-9647115 | Msa0534270:intron | 20.0% |
| !!! | TTTAACTTCAAATCTAATCA+AGG | - | chr4_1:9647336-9647355 | Msa0534270:CDS | 20.0% |
| !! | ATTAAAAAAAAATGCAACCT+AGG | - | chr4_1:9647397-9647416 | Msa0534270:CDS | 20.0% |
| !! | TAGAAAATAAACAAATTCCT+AGG | + | chr4_1:9647417-9647436 | None:intergenic | 20.0% |
| !! | TCAAAACAAATTCAATAACA+AGG | + | chr4_1:9647787-9647806 | None:intergenic | 20.0% |
| !!! | ATTCTCCAATTATCAAATTT+TGG | - | chr4_1:9647877-9647896 | Msa0534270:five_prime_UTR | 20.0% |
| !!! | AACAAGTAACTTTTCTTATT+GGG | + | chr4_1:9647952-9647971 | None:intergenic | 20.0% |
| !!! | TAACAAGTAACTTTTCTTAT+TGG | + | chr4_1:9647953-9647972 | None:intergenic | 20.0% |
| !! | AAAATGGAGAAATTGTATTT+AGG | + | chr4_1:9646028-9646047 | None:intergenic | 20.0% |
| !! | ATTGTAGATATTGGAAAATT+TGG | + | chr4_1:9647094-9647113 | None:intergenic | 20.0% |
| !!! | TTTTCCAATATCTACAATTT+TGG | - | chr4_1:9647096-9647115 | Msa0534270:intron | 20.0% |
| !!! | TTTAACTTCAAATCTAATCA+AGG | - | chr4_1:9647336-9647355 | Msa0534270:CDS | 20.0% |
| !! | ATTAAAAAAAAATGCAACCT+AGG | - | chr4_1:9647397-9647416 | Msa0534270:CDS | 20.0% |
| !! | TAGAAAATAAACAAATTCCT+AGG | + | chr4_1:9647417-9647436 | None:intergenic | 20.0% |
| !! | TCAAAACAAATTCAATAACA+AGG | + | chr4_1:9647787-9647806 | None:intergenic | 20.0% |
| !!! | ATTCTCCAATTATCAAATTT+TGG | - | chr4_1:9647877-9647896 | Msa0534270:five_prime_UTR | 20.0% |
| !!! | AACAAGTAACTTTTCTTATT+GGG | + | chr4_1:9647952-9647971 | None:intergenic | 20.0% |
| !!! | TAACAAGTAACTTTTCTTAT+TGG | + | chr4_1:9647953-9647972 | None:intergenic | 20.0% |
| ! | GAAATTGTATTTAGGAAAGA+AGG | + | chr4_1:9646020-9646039 | None:intergenic | 25.0% |
| !! | TGTAAATGAAGGTATAGTTT+GGG | + | chr4_1:9646051-9646070 | None:intergenic | 25.0% |
| !! | TTGTAAATGAAGGTATAGTT+TGG | + | chr4_1:9646052-9646071 | None:intergenic | 25.0% |
| ! | TAATAGAACCAATGATAGTT+TGG | + | chr4_1:9646090-9646109 | None:intergenic | 25.0% |
| !! | ATAAATTTTTGCAGCTGAAA+TGG | - | chr4_1:9646264-9646283 | Msa0534270:CDS | 25.0% |
| ! | AGTTGTGTCTAAATTACAAT+AGG | - | chr4_1:9646661-9646680 | Msa0534270:intron | 25.0% |
| ! | TTCTTTAATTCTTCTATGCA+AGG | - | chr4_1:9647177-9647196 | Msa0534270:intron | 25.0% |
| !! | TAAACATTGCTCTAAATGTA+AGG | + | chr4_1:9647249-9647268 | None:intergenic | 25.0% |
| !!! | TCTCCTTATGTTTTGTTAAT+TGG | - | chr4_1:9647477-9647496 | Msa0534270:CDS | 25.0% |
| ! | ATGCCAATTAACAAAACATA+AGG | + | chr4_1:9647483-9647502 | None:intergenic | 25.0% |
| ! | TATAGTAGAGGATATATAGA+GGG | - | chr4_1:9647748-9647767 | Msa0534270:intron | 25.0% |
| ! | GATATATAGAGGGAAATATA+TGG | - | chr4_1:9647758-9647777 | Msa0534270:intron | 25.0% |
| !!! | ATGTAATAATCAAGTTGAGT+TGG | - | chr4_1:9647810-9647829 | Msa0534270:CDS | 25.0% |
| !!! | TGTAATAATCAAGTTGAGTT+GGG | - | chr4_1:9647811-9647830 | Msa0534270:CDS | 25.0% |
| !!! | TTTGGAATTATTTCTACTCT+TGG | - | chr4_1:9647895-9647914 | Msa0534270:five_prime_UTR | 25.0% |
| ! | GAAATTGTATTTAGGAAAGA+AGG | + | chr4_1:9646020-9646039 | None:intergenic | 25.0% |
| !! | TGTAAATGAAGGTATAGTTT+GGG | + | chr4_1:9646051-9646070 | None:intergenic | 25.0% |
| !! | TTGTAAATGAAGGTATAGTT+TGG | + | chr4_1:9646052-9646071 | None:intergenic | 25.0% |
| ! | TAATAGAACCAATGATAGTT+TGG | + | chr4_1:9646090-9646109 | None:intergenic | 25.0% |
| !! | ATAAATTTTTGCAGCTGAAA+TGG | - | chr4_1:9646264-9646283 | Msa0534270:CDS | 25.0% |
| ! | AGTTGTGTCTAAATTACAAT+AGG | - | chr4_1:9646661-9646680 | Msa0534270:intron | 25.0% |
| ! | TTCTTTAATTCTTCTATGCA+AGG | - | chr4_1:9647177-9647196 | Msa0534270:intron | 25.0% |
| !! | TAAACATTGCTCTAAATGTA+AGG | + | chr4_1:9647249-9647268 | None:intergenic | 25.0% |
| !!! | TCTCCTTATGTTTTGTTAAT+TGG | - | chr4_1:9647477-9647496 | Msa0534270:CDS | 25.0% |
| ! | ATGCCAATTAACAAAACATA+AGG | + | chr4_1:9647483-9647502 | None:intergenic | 25.0% |
| ! | TATAGTAGAGGATATATAGA+GGG | - | chr4_1:9647748-9647767 | Msa0534270:intron | 25.0% |
| ! | GATATATAGAGGGAAATATA+TGG | - | chr4_1:9647758-9647777 | Msa0534270:intron | 25.0% |
| !!! | ATGTAATAATCAAGTTGAGT+TGG | - | chr4_1:9647810-9647829 | Msa0534270:CDS | 25.0% |
| !!! | TGTAATAATCAAGTTGAGTT+GGG | - | chr4_1:9647811-9647830 | Msa0534270:CDS | 25.0% |
| !!! | TTTGGAATTATTTCTACTCT+TGG | - | chr4_1:9647895-9647914 | Msa0534270:five_prime_UTR | 25.0% |
| AAAGACATGGTTGTAAATGA+AGG | + | chr4_1:9646062-9646081 | None:intergenic | 30.0% | |
| TTTCTCAACCAAACTATCAT+TGG | - | chr4_1:9646079-9646098 | Msa0534270:three_prime_UTR | 30.0% | |
| TATACATACCTAAAGATGCA+TGG | + | chr4_1:9646130-9646149 | None:intergenic | 30.0% | |
| TAACTTCAGATGTTCTACAT+TGG | + | chr4_1:9646393-9646412 | None:intergenic | 30.0% | |
| ! | TAGAACATCTGAAGTTATAG+TGG | - | chr4_1:9646396-9646415 | Msa0534270:intron | 30.0% |
| AGAAAAGGTCAACAATGTTA+GGG | + | chr4_1:9646564-9646583 | None:intergenic | 30.0% | |
| AAGAAAAGGTCAACAATGTT+AGG | + | chr4_1:9646565-9646584 | None:intergenic | 30.0% | |
| ! | TGTTGACCTTTTCTTCAATA+TGG | - | chr4_1:9646570-9646589 | Msa0534270:intron | 30.0% |
| TCTCAAATTATTAGCAGTGT+CGG | + | chr4_1:9646790-9646809 | None:intergenic | 30.0% | |
| ! | TCCAATATCTACAATTTTGG+AGG | - | chr4_1:9647099-9647118 | Msa0534270:intron | 30.0% |
| ! | ATTGCTCTAAATGTAAGGAA+AGG | + | chr4_1:9647244-9647263 | None:intergenic | 30.0% |
| TCCTATGTTTACTATAGTAG+AGG | - | chr4_1:9647736-9647755 | Msa0534270:intron | 30.0% | |
| TCCTCTACTATAGTAAACAT+AGG | + | chr4_1:9647740-9647759 | None:intergenic | 30.0% | |
| CTATAGTAGAGGATATATAG+AGG | - | chr4_1:9647747-9647766 | Msa0534270:intron | 30.0% | |
| AAAGACATGGTTGTAAATGA+AGG | + | chr4_1:9646062-9646081 | None:intergenic | 30.0% | |
| TTTCTCAACCAAACTATCAT+TGG | - | chr4_1:9646079-9646098 | Msa0534270:three_prime_UTR | 30.0% | |
| TATACATACCTAAAGATGCA+TGG | + | chr4_1:9646130-9646149 | None:intergenic | 30.0% | |
| TAACTTCAGATGTTCTACAT+TGG | + | chr4_1:9646393-9646412 | None:intergenic | 30.0% | |
| ! | TAGAACATCTGAAGTTATAG+TGG | - | chr4_1:9646396-9646415 | Msa0534270:intron | 30.0% |
| AGAAAAGGTCAACAATGTTA+GGG | + | chr4_1:9646564-9646583 | None:intergenic | 30.0% | |
| AAGAAAAGGTCAACAATGTT+AGG | + | chr4_1:9646565-9646584 | None:intergenic | 30.0% | |
| ! | TGTTGACCTTTTCTTCAATA+TGG | - | chr4_1:9646570-9646589 | Msa0534270:intron | 30.0% |
| TCTCAAATTATTAGCAGTGT+CGG | + | chr4_1:9646790-9646809 | None:intergenic | 30.0% | |
| ! | TCCAATATCTACAATTTTGG+AGG | - | chr4_1:9647099-9647118 | Msa0534270:intron | 30.0% |
| ! | ATTGCTCTAAATGTAAGGAA+AGG | + | chr4_1:9647244-9647263 | None:intergenic | 30.0% |
| TCCTATGTTTACTATAGTAG+AGG | - | chr4_1:9647736-9647755 | Msa0534270:intron | 30.0% | |
| TCCTCTACTATAGTAAACAT+AGG | + | chr4_1:9647740-9647759 | None:intergenic | 30.0% | |
| CTATAGTAGAGGATATATAG+AGG | - | chr4_1:9647747-9647766 | Msa0534270:intron | 30.0% | |
| ! | GAAGGTATAGTTTGGGAAAA+TGG | + | chr4_1:9646044-9646063 | None:intergenic | 35.0% |
| TAGTTTGGTTGAGAAAGACA+TGG | + | chr4_1:9646075-9646094 | None:intergenic | 35.0% | |
| TTTCTCATCCATGCATCTTT+AGG | - | chr4_1:9646119-9646138 | Msa0534270:three_prime_UTR | 35.0% | |
| ! | AAGTACACACTTCTTTTGGT+AGG | + | chr4_1:9646300-9646319 | None:intergenic | 35.0% |
| !! | GAGAAAGTACACACTTCTTT+TGG | + | chr4_1:9646304-9646323 | None:intergenic | 35.0% |
| ATCTGGAAAGAGATGTTTGT+TGG | - | chr4_1:9646333-9646352 | Msa0534270:CDS | 35.0% | |
| ! | TGTTTGTTGGAGACTCAAAA+AGG | - | chr4_1:9646346-9646365 | Msa0534270:CDS | 35.0% |
| GCCTCCAAAATTGTAGATAT+TGG | + | chr4_1:9647103-9647122 | None:intergenic | 35.0% | |
| ACTTTCTTAGTGATTGTCGA+CGG | + | chr4_1:9647296-9647315 | None:intergenic | 35.0% | |
| CCTGTTGTCGCATAAATTTA+AGG | + | chr4_1:9647519-9647538 | None:intergenic | 35.0% | |
| CCTTAAATTTATGCGACAAC+AGG | - | chr4_1:9647516-9647535 | Msa0534270:CDS | 35.0% | |
| TTGTGTTTCTCACATAGTTC+TGG | + | chr4_1:9647552-9647571 | None:intergenic | 35.0% | |
| ! | CACCTTCTTCTCAGTAATTT+TGG | - | chr4_1:9647673-9647692 | Msa0534270:intron | 35.0% |
| CTCCAAAATTACTGAGAAGA+AGG | + | chr4_1:9647678-9647697 | None:intergenic | 35.0% | |
| !! | TCTCAGTAATTTTGGAGAGA+TGG | - | chr4_1:9647681-9647700 | Msa0534270:intron | 35.0% |
| ! | GAAGGTATAGTTTGGGAAAA+TGG | + | chr4_1:9646044-9646063 | None:intergenic | 35.0% |
| TAGTTTGGTTGAGAAAGACA+TGG | + | chr4_1:9646075-9646094 | None:intergenic | 35.0% | |
| TTTCTCATCCATGCATCTTT+AGG | - | chr4_1:9646119-9646138 | Msa0534270:three_prime_UTR | 35.0% | |
| ! | AAGTACACACTTCTTTTGGT+AGG | + | chr4_1:9646300-9646319 | None:intergenic | 35.0% |
| !! | GAGAAAGTACACACTTCTTT+TGG | + | chr4_1:9646304-9646323 | None:intergenic | 35.0% |
| ATCTGGAAAGAGATGTTTGT+TGG | - | chr4_1:9646333-9646352 | Msa0534270:CDS | 35.0% | |
| ! | TGTTTGTTGGAGACTCAAAA+AGG | - | chr4_1:9646346-9646365 | Msa0534270:CDS | 35.0% |
| GCCTCCAAAATTGTAGATAT+TGG | + | chr4_1:9647103-9647122 | None:intergenic | 35.0% | |
| ACTTTCTTAGTGATTGTCGA+CGG | + | chr4_1:9647296-9647315 | None:intergenic | 35.0% | |
| CCTGTTGTCGCATAAATTTA+AGG | + | chr4_1:9647519-9647538 | None:intergenic | 35.0% | |
| CCTTAAATTTATGCGACAAC+AGG | - | chr4_1:9647516-9647535 | Msa0534270:CDS | 35.0% | |
| TTGTGTTTCTCACATAGTTC+TGG | + | chr4_1:9647552-9647571 | None:intergenic | 35.0% | |
| ! | CACCTTCTTCTCAGTAATTT+TGG | - | chr4_1:9647673-9647692 | Msa0534270:intron | 35.0% |
| CTCCAAAATTACTGAGAAGA+AGG | + | chr4_1:9647678-9647697 | None:intergenic | 35.0% | |
| !! | TCTCAGTAATTTTGGAGAGA+TGG | - | chr4_1:9647681-9647700 | Msa0534270:intron | 35.0% |
| ACTTTCTCAGTAGCTTCATC+TGG | - | chr4_1:9646316-9646335 | Msa0534270:CDS | 40.0% | |
| !! | GAGACTCAAAAAGGTGTCAA+TGG | - | chr4_1:9646355-9646374 | Msa0534270:CDS | 40.0% |
| CATTGAGACAGATCAATGTG+TGG | - | chr4_1:9646435-9646454 | Msa0534270:intron | 40.0% | |
| !! | GGTGTTGATAGAAGTTCTGT+TGG | - | chr4_1:9646466-9646485 | Msa0534270:intron | 40.0% |
| TTCTTTGAGCCACAATTCAC+TGG | - | chr4_1:9646505-9646524 | Msa0534270:intron | 40.0% | |
| CAAAGTTTGCCAGTGAATTG+TGG | + | chr4_1:9646517-9646536 | None:intergenic | 40.0% | |
| CAGCAGCCATATTGAAGAAA+AGG | + | chr4_1:9646579-9646598 | None:intergenic | 40.0% | |
| ! | CTTTTCTTCAATATGGCTGC+TGG | - | chr4_1:9646577-9646596 | Msa0534270:intron | 40.0% |
| ACTTTCTCAGTAGCTTCATC+TGG | - | chr4_1:9646316-9646335 | Msa0534270:CDS | 40.0% | |
| !! | GAGACTCAAAAAGGTGTCAA+TGG | - | chr4_1:9646355-9646374 | Msa0534270:CDS | 40.0% |
| CATTGAGACAGATCAATGTG+TGG | - | chr4_1:9646435-9646454 | Msa0534270:intron | 40.0% | |
| !! | GGTGTTGATAGAAGTTCTGT+TGG | - | chr4_1:9646466-9646485 | Msa0534270:intron | 40.0% |
| TTCTTTGAGCCACAATTCAC+TGG | - | chr4_1:9646505-9646524 | Msa0534270:intron | 40.0% | |
| CAAAGTTTGCCAGTGAATTG+TGG | + | chr4_1:9646517-9646536 | None:intergenic | 40.0% | |
| CAGCAGCCATATTGAAGAAA+AGG | + | chr4_1:9646579-9646598 | None:intergenic | 40.0% | |
| ! | CTTTTCTTCAATATGGCTGC+TGG | - | chr4_1:9646577-9646596 | Msa0534270:intron | 40.0% |
| ! | GATCAATGTGTGGAAGCATG+TGG | - | chr4_1:9646445-9646464 | Msa0534270:intron | 45.0% |
| !! | GGGCACTTTTTGTAACAAGC+TGG | + | chr4_1:9646544-9646563 | None:intergenic | 45.0% |
| TTCAATATGGCTGCTGGAGA+GGG | - | chr4_1:9646583-9646602 | Msa0534270:intron | 45.0% | |
| TGTTGGTGTAGTGTCTGTGT+CGG | - | chr4_1:9646891-9646910 | Msa0534270:intron | 45.0% | |
| CAGTGAGTTGCTATGAAGCA+TGG | + | chr4_1:9646963-9646982 | None:intergenic | 45.0% | |
| CATGCTTCATAGCAACTCAC+TGG | - | chr4_1:9646961-9646980 | Msa0534270:intron | 45.0% | |
| !! | TCCTCTGAAACTGAAGAAGC+GGG | + | chr4_1:9647630-9647649 | None:intergenic | 45.0% |
| !! | GTCCTCTGAAACTGAAGAAG+CGG | + | chr4_1:9647631-9647650 | None:intergenic | 45.0% |
| ! | GATCAATGTGTGGAAGCATG+TGG | - | chr4_1:9646445-9646464 | Msa0534270:intron | 45.0% |
| !! | GGGCACTTTTTGTAACAAGC+TGG | + | chr4_1:9646544-9646563 | None:intergenic | 45.0% |
| TTCAATATGGCTGCTGGAGA+GGG | - | chr4_1:9646583-9646602 | Msa0534270:intron | 45.0% | |
| TGTTGGTGTAGTGTCTGTGT+CGG | - | chr4_1:9646891-9646910 | Msa0534270:intron | 45.0% | |
| CAGTGAGTTGCTATGAAGCA+TGG | + | chr4_1:9646963-9646982 | None:intergenic | 45.0% | |
| CATGCTTCATAGCAACTCAC+TGG | - | chr4_1:9646961-9646980 | Msa0534270:intron | 45.0% | |
| !! | TCCTCTGAAACTGAAGAAGC+GGG | + | chr4_1:9647630-9647649 | None:intergenic | 45.0% |
| !! | GTCCTCTGAAACTGAAGAAG+CGG | + | chr4_1:9647631-9647650 | None:intergenic | 45.0% |
| !!! | AATATATAATTTTAATGTTT+TGG | + | chr4_1:9647717-9647736 | None:intergenic | 5.0% |
| !!! | AATATATAATTTTAATGTTT+TGG | + | chr4_1:9647717-9647736 | None:intergenic | 5.0% |
| TGCAGCTGAAATGGCATGTG+AGG | - | chr4_1:9646273-9646292 | Msa0534270:CDS | 50.0% | |
| CTTCAATATGGCTGCTGGAG+AGG | - | chr4_1:9646582-9646601 | Msa0534270:intron | 50.0% | |
| GTCAACGTCTAGTCGTGTCA+GGG | + | chr4_1:9646764-9646783 | None:intergenic | 50.0% | |
| TGTCAACGTCTAGTCGTGTC+AGG | + | chr4_1:9646765-9646784 | None:intergenic | 50.0% | |
| TCTTAGTGATTGTCGACGGC+AGG | + | chr4_1:9647292-9647311 | None:intergenic | 50.0% | |
| !! | CCTCTGAAACTGAAGAAGCG+GGG | + | chr4_1:9647629-9647648 | None:intergenic | 50.0% |
| TGCAGCTGAAATGGCATGTG+AGG | - | chr4_1:9646273-9646292 | Msa0534270:CDS | 50.0% | |
| CTTCAATATGGCTGCTGGAG+AGG | - | chr4_1:9646582-9646601 | Msa0534270:intron | 50.0% | |
| GTCAACGTCTAGTCGTGTCA+GGG | + | chr4_1:9646764-9646783 | None:intergenic | 50.0% | |
| TGTCAACGTCTAGTCGTGTC+AGG | + | chr4_1:9646765-9646784 | None:intergenic | 50.0% | |
| TCTTAGTGATTGTCGACGGC+AGG | + | chr4_1:9647292-9647311 | None:intergenic | 50.0% | |
| !! | CCTCTGAAACTGAAGAAGCG+GGG | + | chr4_1:9647629-9647648 | None:intergenic | 50.0% |
| CACGACACGAGTCTGCTATC+AGG | - | chr4_1:9646915-9646934 | Msa0534270:intron | 55.0% | |
| ATGGTCGAGCTTGTGAGCTC+CGG | - | chr4_1:9647591-9647610 | Msa0534270:CDS | 55.0% | |
| CCCCGCTTCTTCAGTTTCAG+AGG | - | chr4_1:9647626-9647645 | Msa0534270:intron | 55.0% | |
| ! | TGAGAAGAAGGTGCAGCTGC+AGG | + | chr4_1:9647666-9647685 | None:intergenic | 55.0% |
| CACGACACGAGTCTGCTATC+AGG | - | chr4_1:9646915-9646934 | Msa0534270:intron | 55.0% | |
| ATGGTCGAGCTTGTGAGCTC+CGG | - | chr4_1:9647591-9647610 | Msa0534270:CDS | 55.0% | |
| CCCCGCTTCTTCAGTTTCAG+AGG | - | chr4_1:9647626-9647645 | Msa0534270:intron | 55.0% | |
| ! | TGAGAAGAAGGTGCAGCTGC+AGG | + | chr4_1:9647666-9647685 | None:intergenic | 55.0% |
| GAGCAACCCTCGTCGTGCTA+TGG | - | chr4_1:9647572-9647591 | Msa0534270:CDS | 60.0% | |
| GCTCGACCATAGCACGACGA+GGG | + | chr4_1:9647581-9647600 | None:intergenic | 60.0% | |
| AGCTCGACCATAGCACGACG+AGG | + | chr4_1:9647582-9647601 | None:intergenic | 60.0% | |
| GTGAGCTCCGGAGCTGCATT+TGG | - | chr4_1:9647603-9647622 | Msa0534270:CDS | 60.0% | |
| GAGCAACCCTCGTCGTGCTA+TGG | - | chr4_1:9647572-9647591 | Msa0534270:CDS | 60.0% | |
| GCTCGACCATAGCACGACGA+GGG | + | chr4_1:9647581-9647600 | None:intergenic | 60.0% | |
| AGCTCGACCATAGCACGACG+AGG | + | chr4_1:9647582-9647601 | None:intergenic | 60.0% | |
| GTGAGCTCCGGAGCTGCATT+TGG | - | chr4_1:9647603-9647622 | Msa0534270:CDS | 60.0% | |
| AGCGGGGCCAAATGCAGCTC+CGG | + | chr4_1:9647613-9647632 | None:intergenic | 65.0% | |
| AGCGGGGCCAAATGCAGCTC+CGG | + | chr4_1:9647613-9647632 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 9645944 | 9647974 | 9645944 | ID=Msa0534270;Name=Msa0534270 |
| chr4_1 | mRNA | 9645944 | 9647974 | 9645944 | ID=Msa0534270-mRNA-1;Parent=Msa0534270;Name=Msa0534270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=130|1|1|1|1|1|3|285|181 |
| chr4_1 | exon | 9645944 | 9646380 | 9645944 | ID=Msa0534270-mRNA-1:exon:3140;Parent=Msa0534270-mRNA-1 |
| chr4_1 | exon | 9647314 | 9647640 | 9647314 | ID=Msa0534270-mRNA-1:exon:3139;Parent=Msa0534270-mRNA-1 |
| chr4_1 | exon | 9647778 | 9647974 | 9647778 | ID=Msa0534270-mRNA-1:exon:3138;Parent=Msa0534270-mRNA-1 |
| chr4_1 | five_prime_UTR | 9647845 | 9647974 | 9647845 | ID=Msa0534270-mRNA-1:five_prime_utr;Parent=Msa0534270-mRNA-1 |
| chr4_1 | CDS | 9647778 | 9647844 | 9647778 | ID=Msa0534270-mRNA-1:cds;Parent=Msa0534270-mRNA-1 |
| chr4_1 | CDS | 9647314 | 9647640 | 9647314 | ID=Msa0534270-mRNA-1:cds;Parent=Msa0534270-mRNA-1 |
| chr4_1 | CDS | 9646229 | 9646380 | 9646229 | ID=Msa0534270-mRNA-1:cds;Parent=Msa0534270-mRNA-1 |
| chr4_1 | three_prime_UTR | 9645944 | 9646228 | 9645944 | ID=Msa0534270-mRNA-1:three_prime_utr;Parent=Msa0534270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
