AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0443450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443450 MtrunA17_Chr3g0078371 99.242 396 3 0 1 396 818 1213 0.0 816
Msa0443450 MtrunA17_Chr8g0355251 74.083 409 90 2 1 394 768 1175 0.0 585
Msa0443450 MtrunA17_Chr7g0244991 57.729 414 136 2 1 375 854 1267 3.90e-157 475
Msa0443450 MtrunA17_Chr8g0363911 38.025 405 216 8 11 393 771 1162 2.05e-77 259
Msa0443450 MtrunA17_Chr5g0415271 39.155 355 199 4 32 372 774 1125 8.86e-75 252
Msa0443450 MtrunA17_Chr8g0342811 35.714 406 232 8 1 382 777 1177 4.75e-73 247
Msa0443450 MtrunA17_Chr6g0450601 35.772 369 220 5 10 361 783 1151 1.79e-70 240
Msa0443450 MtrunA17_Chr8g0368691 34.653 404 249 5 3 391 785 1188 2.22e-69 237
Msa0443450 MtrunA17_Chr2g0329991 34.358 358 221 4 36 382 823 1177 4.58e-68 233
Msa0443450 MtrunA17_Chr4g0062251 37.719 342 187 3 1 316 752 1093 5.92e-68 233
Msa0443450 MtrunA17_Chr3g0091611 38.576 337 196 2 36 361 798 1134 4.08e-65 224
Msa0443450 MtrunA17_Chr0c05g0492131 37.463 339 197 4 36 361 799 1135 2.27e-63 219
Msa0443450 MtrunA17_Chr2g0324791 31.383 376 243 6 4 373 662 1028 5.53e-56 198
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443450 AT5G04930.1 68.146 383 118 2 1 380 765 1146 0.0 556
Msa0443450 AT3G27870.3 36.616 396 230 7 13 390 586 978 2.98e-76 255
Msa0443450 AT3G27870.1 36.616 396 230 7 13 390 777 1169 1.38e-75 254
Msa0443450 AT1G59820.1 36.203 395 227 8 11 386 758 1146 1.75e-72 246
Msa0443450 AT3G25610.1 37.245 392 216 6 1 362 751 1142 1.65e-70 240
Msa0443450 AT1G13210.1 36.456 395 217 7 1 362 750 1143 3.22e-70 239
Msa0443450 AT1G17500.2 33.907 407 244 8 1 385 761 1164 1.06e-69 238
Msa0443450 AT1G17500.1 33.907 407 244 8 1 385 761 1164 1.06e-69 238
Msa0443450 AT1G72700.1 35.262 363 217 4 36 385 819 1176 3.97e-69 236
Msa0443450 AT1G72700.3 35.262 363 217 4 36 385 819 1176 3.97e-69 236
Msa0443450 AT1G72700.2 35.262 363 217 4 36 385 819 1176 3.97e-69 236
Msa0443450 AT1G68710.2 35.990 389 221 7 1 361 758 1146 6.75e-69 236
Msa0443450 AT1G68710.1 35.990 389 221 7 1 361 758 1146 6.75e-69 236
Msa0443450 AT1G26130.1 34.974 386 226 6 32 396 802 1183 1.10e-68 235
Msa0443450 AT1G26130.2 34.974 386 226 6 32 396 803 1184 1.22e-68 235
Msa0443450 AT1G26130.4 34.974 386 226 6 32 396 803 1184 1.22e-68 235
Msa0443450 AT1G26130.3 34.974 386 226 6 32 396 803 1184 1.22e-68 235
Msa0443450 AT3G13900.1 36.571 350 211 2 36 374 826 1175 3.09e-67 231
Msa0443450 AT1G54280.2 36.080 352 210 4 36 374 828 1177 3.92e-65 225
Msa0443450 AT1G54280.3 36.080 352 210 4 36 374 828 1177 3.92e-65 225
Msa0443450 AT1G54280.1 36.080 352 210 4 36 374 828 1177 3.92e-65 225
Msa0443450 AT1G68710.3 33.735 415 221 8 1 361 758 1172 7.28e-64 221
Msa0443450 AT3G27870.2 48.571 210 103 2 13 217 777 986 2.91e-60 210
Msa0443450 AT5G44240.2 30.788 406 259 7 4 396 662 1058 1.08e-58 206
Msa0443450 AT5G44240.1 30.788 406 259 7 4 396 694 1090 1.31e-58 206
Msa0443450 AT3G13900.2 55.725 131 54 1 36 162 826 956 1.39e-38 148
Msa0443450 AT3G13900.3 55.172 87 39 0 36 122 826 912 8.41e-22 98.2

Find 86 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTGTTCTTGTCCTATTT+TGG 0.168882 3_3:-14195070 Msa0443450:intron
GACTCTTGCAGTGGTTATTT+TGG 0.189604 3_3:-14194287 Msa0443450:CDS
GGATTGTGACTTACCAAAAT+AGG 0.232979 3_3:+14195057 None:intergenic
TTTCAAGTACTGGACTGTTC+TGG 0.249751 3_3:-14193469 Msa0443450:CDS
TTTAAAGTTGCATATACTTT+AGG 0.260617 3_3:-14193232 Msa0443450:three_prime_UTR
GGCAAAGCATGGTTGTATTT+TGG 0.266627 3_3:-14194369 Msa0443450:CDS
CACAGCATTGCTTCCACGTT+TGG 0.291090 3_3:-14193423 Msa0443450:CDS
GGCCTCCACTCTTTGCATAT+TGG 0.293028 3_3:-14194348 Msa0443450:CDS
TTCTTTCATGTTTCAAGTAC+TGG 0.299241 3_3:-14193479 Msa0443450:CDS
CATAAACAATTTCTTGTTGT+AGG 0.301151 3_3:+14194414 None:intergenic
TATCAAAGAGTTGCTGAAAA+TGG 0.301203 3_3:-14193326 Msa0443450:CDS
GAGCAGCAGGGATTAAAGTT+TGG 0.310183 3_3:-14195873 Msa0443450:five_prime_UTR
CAAGAAACTGCTATATCTAT+TGG 0.319476 3_3:-14195832 Msa0443450:five_prime_UTR
GGTGACTCATGCTGTCATTT+GGG 0.323672 3_3:-14194224 Msa0443450:CDS
ATTTACAACATAACAAACTA+TGG 0.331117 3_3:+14193101 None:intergenic
TATAAAGTTGAGGATACTTT+AGG 0.331612 3_3:+14194458 None:intergenic
ATAGATTACTTCTCTTATCT+TGG 0.335329 3_3:+14193269 None:intergenic
AGCAGCAGGGATTAAAGTTT+GGG 0.341999 3_3:-14195872 Msa0443450:five_prime_UTR
CAGATAGCTTTGATTATTGA+TGG 0.357122 3_3:-14195682 Msa0443450:CDS
GCACTTCCAACTATTATTGT+TGG 0.363854 3_3:-14194514 Msa0443450:CDS
GGGTGACTCATGCTGTCATT+TGG 0.373060 3_3:-14194225 Msa0443450:CDS
CTTGGTTGATGATATGAGAT+AGG 0.382046 3_3:+14193287 None:intergenic
TCCTTTCATTCTATAATCAA+TGG 0.397649 3_3:+14193076 None:intergenic
TTCAAGTACTGGACTGTTCT+GGG 0.403555 3_3:-14193468 Msa0443450:CDS
ATTGAGTCGCTGAGAGCAGC+AGG 0.413874 3_3:-14195886 Msa0443450:five_prime_UTR
GATGCTATACCTCAACTTCC+TGG 0.419239 3_3:-14194163 Msa0443450:CDS
TTGTTTCCCTTGTGAAGAAA+AGG 0.441558 3_3:-14195453 Msa0443450:CDS
TCGAGTGGCTCCACTGCAAA+AGG 0.458399 3_3:-14195482 Msa0443450:CDS
TAGCAAGCATAGGAGACCTT+TGG 0.458552 3_3:-14194309 Msa0443450:CDS
CTGTTCTGGGCATTGTTGCT+AGG 0.462546 3_3:-14193455 Msa0443450:CDS
ATATCATGTAACCAAGCCTT+TGG 0.463827 3_3:+14195117 None:intergenic
AGAATTCCAACAATAATAGT+TGG 0.464307 3_3:+14194508 None:intergenic
AGAGGGTAGGCAAGCTGTAA+TGG 0.465745 3_3:-14195210 Msa0443450:CDS
TACCTCAACTTCCTGGCTAC+TGG 0.470827 3_3:-14194156 Msa0443450:intron
GGTCAATTTACATTTGGCTA+TGG 0.472950 3_3:-14194266 Msa0443450:CDS
AACTCAATCAAAGTTACGTT+GGG 0.474320 3_3:-14192955 None:intergenic
ACCATTGATTATAGAATGAA+AGG 0.475014 3_3:-14193077 Msa0443450:three_prime_UTR
GGATGTTGTCAGATGGTATT+GGG 0.475780 3_3:-14194245 Msa0443450:CDS
CACTGGAATTACCAAAGGCT+TGG 0.479104 3_3:-14195128 Msa0443450:CDS
TGGATGTTGTCAGATGGTAT+TGG 0.481217 3_3:-14194246 Msa0443450:CDS
TGATGTTTCAATGATTCAAA+TGG 0.483739 3_3:-14195261 Msa0443450:CDS
TATCCTCAACTTTATAGTGC+TGG 0.490459 3_3:-14194451 Msa0443450:CDS
GTTCCTCTCTTATTGATACA+TGG 0.491866 3_3:-14195152 Msa0443450:CDS
CACTGTCGAGTATGTGTACA+AGG 0.498887 3_3:+14195653 None:intergenic
CTAGAAATTTGAATATCACT+AGG 0.504990 3_3:+14193371 None:intergenic
AGATAGCTTTGATTATTGAT+GGG 0.506469 3_3:-14195681 Msa0443450:CDS
CAACAACTGCAATAAATGAA+TGG 0.507660 3_3:-14194567 Msa0443450:CDS
CAGAGAATTTCTCCATGTTG+CGG 0.513367 3_3:-14193203 Msa0443450:three_prime_UTR
TCTTATTGATACATGGTCAC+TGG 0.520717 3_3:-14195145 Msa0443450:CDS
GTGGCTCCACTGCAAAAGGC+TGG 0.537855 3_3:-14195478 Msa0443450:CDS
GTCTCAAAGATGCTCTTGAA+AGG 0.539452 3_3:-14195732 Msa0443450:CDS
ATGATTCAAATGGCTGATGT+TGG 0.540166 3_3:-14195251 Msa0443450:CDS
GATAGCTTTGATTATTGATG+GGG 0.541005 3_3:-14195680 Msa0443450:CDS
GATGTTGGAGTTGGTATAAG+TGG 0.542521 3_3:-14195236 Msa0443450:CDS
TATTGCAGTTGTTGAAGTGA+AGG 0.546160 3_3:+14194576 None:intergenic
AGTACTTGAAACATGAAAGA+AGG 0.553632 3_3:+14193481 None:intergenic
GAAATTGTTTATGTTAACAA+TGG 0.559435 3_3:-14194404 Msa0443450:CDS
CAAATGGCTGATGTTGGAGT+TGG 0.562565 3_3:-14195245 Msa0443450:CDS
TGTCGTTCTTTGTTGTCGAG+TGG 0.562870 3_3:-14195497 Msa0443450:CDS
GTGAATACATACCAGTAGCC+AGG 0.565559 3_3:+14194145 None:intergenic
AAACTCAATCAAAGTTACGT+TGG 0.569503 3_3:-14192956 None:intergenic
TTTCATTGTTAACTATCCGA+AGG 0.570789 3_3:-14193179 Msa0443450:three_prime_UTR
GTTGGTATAAGTGGACAAGA+GGG 0.570884 3_3:-14195227 Msa0443450:CDS
TAACAATGGCTGATACTTTG+TGG 0.571058 3_3:-14194390 Msa0443450:CDS
TACCAGTAGCCAGGAAGTTG+AGG 0.574838 3_3:+14194154 None:intergenic
GTGACTCATGCTGTCATTTG+GGG 0.586654 3_3:-14194223 Msa0443450:CDS
CGACAGTGAACATGAAGAAG+AGG 0.590828 3_3:-14195638 Msa0443450:intron
ATGACACTAGCCATCGGAGA+TGG 0.592031 3_3:-14195421 Msa0443450:intron
TGATACTTTGTGGCAAAGCA+TGG 0.592622 3_3:-14194380 Msa0443450:CDS
ACTATTGATATAGCAAGCAT+AGG 0.593453 3_3:-14194319 Msa0443450:CDS
TGTCCAGCACTATAAAGTTG+AGG 0.593916 3_3:+14194448 None:intergenic
TAACAATGAAATCCGCAACA+TGG 0.606625 3_3:+14193191 None:intergenic
AGTTGGTATAAGTGGACAAG+AGG 0.609765 3_3:-14195228 Msa0443450:CDS
AGACCTTTGGACTCTTGCAG+TGG 0.613543 3_3:-14194296 Msa0443450:CDS
TTCCAATATGCAAAGAGTGG+AGG 0.618565 3_3:+14194346 None:intergenic
AGAACTCGTACCATCTCCGA+TGG 0.625531 3_3:+14195411 None:intergenic
TGGCTATGGATGTTGTCAGA+TGG 0.639339 3_3:-14194252 Msa0443450:CDS
GTATAAGTGGACAAGAGGGT+AGG 0.639872 3_3:-14195223 Msa0443450:CDS
TAACCACTGCAAGAGTCCAA+AGG 0.646133 3_3:+14194293 None:intergenic
ATGGTCACTGGAATTACCAA+AGG 0.647432 3_3:-14195133 Msa0443450:CDS
TGACCATGTATCAATAAGAG+AGG 0.653984 3_3:+14195149 None:intergenic
ACCAAAATAGGACAAGAACA+AGG 0.674548 3_3:+14195069 None:intergenic
TCTGACATGACACTAGCCAT+CGG 0.686147 3_3:-14195427 Msa0443450:CDS
ATAGCTTTGATTATTGATGG+GGG 0.688584 3_3:-14195679 Msa0443450:CDS
TTGAGTCGCTGAGAGCAGCA+GGG 0.700401 3_3:-14195885 Msa0443450:five_prime_UTR
GTAGATTATTGAGTACAATG+TGG 0.715499 3_3:+14194540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTTATTTATTTATATGT+TGG + chr3_3:14195171-14195190 None:intergenic 10.0%
!! TATCAAAAAAATTTATTTGA+GGG + chr3_3:14195230-14195249 None:intergenic 10.0%
!! TTATCAAAAAAATTTATTTG+AGG + chr3_3:14195231-14195250 None:intergenic 10.0%
!! CTAGTAAAAAATATATTGAA+AGG + chr3_3:14193486-14193505 None:intergenic 15.0%
!!! CAATATATTTTTTACTAGTA+AGG - chr3_3:14193488-14193507 Msa0443450:intron 15.0%
!! ATTATGATAGAAATAGAATA+GGG + chr3_3:14194732-14194751 None:intergenic 15.0%
!! AATTATGATAGAAATAGAAT+AGG + chr3_3:14194733-14194752 None:intergenic 15.0%
!! AAAGTTTCATTTAAATACTA+CGG - chr3_3:14194879-14194898 Msa0443450:intron 15.0%
!!! ATTTAAATTTTCTATCTTCA+AGG + chr3_3:14194923-14194942 None:intergenic 15.0%
!! TTTCTTATAAATATTTCTCA+AGG + chr3_3:14195003-14195022 None:intergenic 15.0%
!! GTCATTAAAAATAAAAAATG+TGG + chr3_3:14195059-14195078 None:intergenic 15.0%
!!! TTTTAAATGCATATAAAGTA+TGG + chr3_3:14195263-14195282 None:intergenic 15.0%
!! TAATATGATAAACCATTTGT+TGG + chr3_3:14193810-14193829 None:intergenic 20.0%
!! ATTCATATGTTAAAATCTTG+AGG + chr3_3:14194197-14194216 None:intergenic 20.0%
!! GAAATTGTTTATGTTAACAA+TGG - chr3_3:14194439-14194458 Msa0443450:CDS 20.0%
!!! TATTTTGGTCAATTTACATT+TGG - chr3_3:14194571-14194590 Msa0443450:CDS 20.0%
!!! TAGAATAGGTTTTTCTAAAA+AGG + chr3_3:14195026-14195045 None:intergenic 20.0%
!! CAAATATTATCTTATAGTTG+AGG + chr3_3:14195104-14195123 None:intergenic 20.0%
!! CTCAACTATAAGATAATATT+TGG - chr3_3:14195102-14195121 Msa0443450:CDS 20.0%
!! AACTATAAGATAATATTTGG+TGG - chr3_3:14195105-14195124 Msa0443450:CDS 20.0%
!! TATTTATTTATATGTTGGCA+TGG + chr3_3:14195166-14195185 None:intergenic 20.0%
!! AAAAATTTATTTGAGGGAAA+AGG + chr3_3:14195224-14195243 None:intergenic 20.0%
!!! TTTAAAGTTGCATATACTTT+AGG - chr3_3:14195611-14195630 Msa0443450:intron 20.0%
!! ATTTACAACATAACAAACTA+TGG + chr3_3:14195745-14195764 None:intergenic 20.0%
!!! AAATTTTGTGACAAACAAAA+GGG + chr3_3:14195844-14195863 None:intergenic 20.0%
!!! TAAATTTTGTGACAAACAAA+AGG + chr3_3:14195845-14195864 None:intergenic 20.0%
!!! AGATAGCTTTGATTATTGAT+GGG - chr3_3:14193162-14193181 Msa0443450:three_prime_UTR 25.0%
! GCAAATAAAACATGACATAA+TGG + chr3_3:14193272-14193291 None:intergenic 25.0%
! TGATGTTTCAATGATTCAAA+TGG - chr3_3:14193582-14193601 Msa0443450:intron 25.0%
!! ATCAGGCTTTTATAGATAAT+TGG - chr3_3:14193880-14193899 Msa0443450:intron 25.0%
! GACCGTCAATATATAATTAA+GGG - chr3_3:14193902-14193921 Msa0443450:intron 25.0%
! TGCCCTTAATTATATATTGA+CGG + chr3_3:14193907-14193926 None:intergenic 25.0%
! AGAACATACCTAAAAAACAA+AGG + chr3_3:14194239-14194258 None:intergenic 25.0%
! AGAATTCCAACAATAATAGT+TGG + chr3_3:14194338-14194357 None:intergenic 25.0%
! TATAAAGTTGAGGATACTTT+AGG + chr3_3:14194388-14194407 None:intergenic 25.0%
!! CATAAACAATTTCTTGTTGT+AGG + chr3_3:14194432-14194451 None:intergenic 25.0%
!! ATAAGATAATATTTGGTGGT+TGG - chr3_3:14195109-14195128 Msa0443450:CDS 25.0%
!! CAAATTTAAGATGCATAGAA+TGG + chr3_3:14195197-14195216 None:intergenic 25.0%
! AAAGCAATGTATAATTGCAA+AGG + chr3_3:14195286-14195305 None:intergenic 25.0%
!! ATATATTTTACAACCAAACG+TGG + chr3_3:14195436-14195455 None:intergenic 25.0%
! CTAGAAATTTGAATATCACT+AGG + chr3_3:14195475-14195494 None:intergenic 25.0%
! ATAGATTACTTCTCTTATCT+TGG + chr3_3:14195577-14195596 None:intergenic 25.0%
! AACAAAAAAACTCTATCCTT+CGG + chr3_3:14195683-14195702 None:intergenic 25.0%
!! ACCATTGATTATAGAATGAA+AGG - chr3_3:14195766-14195785 Msa0443450:CDS 25.0%
! TCCTTTCATTCTATAATCAA+TGG + chr3_3:14195770-14195789 None:intergenic 25.0%
!! ATTAAAGTTTGGGTTTTGAC+TGG - chr3_3:14192981-14193000 Msa0443450:three_prime_UTR 30.0%
CAAGAAACTGCTATATCTAT+TGG - chr3_3:14193011-14193030 Msa0443450:three_prime_UTR 30.0%
!! CAGATAGCTTTGATTATTGA+TGG - chr3_3:14193161-14193180 Msa0443450:three_prime_UTR 30.0%
!! GATAGCTTTGATTATTGATG+GGG - chr3_3:14193163-14193182 Msa0443450:three_prime_UTR 30.0%
!! ATAGCTTTGATTATTGATGG+GGG - chr3_3:14193164-14193183 Msa0443450:three_prime_UTR 30.0%
!!! CATGTTTTATTTGCTGACTT+TGG - chr3_3:14193278-14193297 Msa0443450:exon 30.0%
TATCCATGTGTTACAATTAC+AGG - chr3_3:14193553-14193572 Msa0443450:intron 30.0%
! ATTTTGCAATGGGACAATTT+AGG - chr3_3:14193662-14193681 Msa0443450:intron 30.0%
GGACCGTCAATATATAATTA+AGG - chr3_3:14193901-14193920 Msa0443450:intron 30.0%
! GAGTACAATATCTGAAACTA+GGG + chr3_3:14194121-14194140 None:intergenic 30.0%
! TGAGTACAATATCTGAAACT+AGG + chr3_3:14194122-14194141 None:intergenic 30.0%
!!! GTTTTGTGCCTTTGTTTTTT+AGG - chr3_3:14194228-14194247 Msa0443450:CDS 30.0%
CAACAACTGCAATAAATGAA+TGG - chr3_3:14194276-14194295 Msa0443450:CDS 30.0%
GTAGATTATTGAGTACAATG+TGG + chr3_3:14194306-14194325 None:intergenic 30.0%
ACTATTGATATAGCAAGCAT+AGG - chr3_3:14194524-14194543 Msa0443450:CDS 30.0%
GTAAACAGATATCACATAGT+TGG - chr3_3:14194780-14194799 Msa0443450:intron 30.0%
TTCGAAGATATACACACAAT+TGG + chr3_3:14194807-14194826 None:intergenic 30.0%
TCAAGGTTAATCTTGTAATC+TGG + chr3_3:14194906-14194925 None:intergenic 30.0%
GTGGAAAAATCACTTAGAAT+AGG + chr3_3:14195040-14195059 None:intergenic 30.0%
TATTATCTTATAGTTGAGGC+TGG + chr3_3:14195100-14195119 None:intergenic 30.0%
CATATAAAGTATGGTAGCAA+AGG + chr3_3:14195254-14195273 None:intergenic 30.0%
AGTACTTGAAACATGAAAGA+AGG + chr3_3:14195365-14195384 None:intergenic 30.0%
! TTCTTTCATGTTTCAAGTAC+TGG - chr3_3:14195364-14195383 Msa0443450:intron 30.0%
TATCAAAGAGTTGCTGAAAA+TGG - chr3_3:14195517-14195536 Msa0443450:CDS 30.0%
TTTCATTGTTAACTATCCGA+AGG - chr3_3:14195664-14195683 Msa0443450:CDS 30.0%
TTGTTTCCCTTGTGAAGAAA+AGG - chr3_3:14193390-14193409 Msa0443450:CDS 35.0%
! AGATGTCCTTTTCTTCACAA+GGG + chr3_3:14193399-14193418 None:intergenic 35.0%
ATGATTCAAATGGCTGATGT+TGG - chr3_3:14193592-14193611 Msa0443450:intron 35.0%
! AATGGCATCAGATTTTGCAA+TGG - chr3_3:14193651-14193670 Msa0443450:intron 35.0%
! ATGGCATCAGATTTTGCAAT+GGG - chr3_3:14193652-14193671 Msa0443450:intron 35.0%
GTTCCTCTCTTATTGATACA+TGG - chr3_3:14193691-14193710 Msa0443450:intron 35.0%
TGACCATGTATCAATAAGAG+AGG + chr3_3:14193697-14193716 None:intergenic 35.0%
TCTTATTGATACATGGTCAC+TGG - chr3_3:14193698-14193717 Msa0443450:intron 35.0%
ATATCATGTAACCAAGCCTT+TGG + chr3_3:14193729-14193748 None:intergenic 35.0%
! TCCTTGTTCTTGTCCTATTT+TGG - chr3_3:14193773-14193792 Msa0443450:intron 35.0%
ACCAAAATAGGACAAGAACA+AGG + chr3_3:14193777-14193796 None:intergenic 35.0%
GGATTGTGACTTACCAAAAT+AGG + chr3_3:14193789-14193808 None:intergenic 35.0%
GTAAGTCACAATCCAACAAA+TGG - chr3_3:14193795-14193814 Msa0443450:intron 35.0%
! AACTAGGGTTTAGTCTCTTT+TGG + chr3_3:14194106-14194125 None:intergenic 35.0%
TATTGCAGTTGTTGAAGTGA+AGG + chr3_3:14194270-14194289 None:intergenic 35.0%
GCACTTCCAACTATTATTGT+TGG - chr3_3:14194329-14194348 Msa0443450:CDS 35.0%
TATCCTCAACTTTATAGTGC+TGG - chr3_3:14194392-14194411 Msa0443450:CDS 35.0%
TAACAATGGCTGATACTTTG+TGG - chr3_3:14194453-14194472 Msa0443450:CDS 35.0%
! CTTTTCCAATATGCAAAGAG+TGG + chr3_3:14194503-14194522 None:intergenic 35.0%
GGTCAATTTACATTTGGCTA+TGG - chr3_3:14194577-14194596 Msa0443450:CDS 35.0%
TTTCCTAACTTTGACATTGC+AGG - chr3_3:14195338-14195357 Msa0443450:intron 35.0%
TTCCTAACTTTGACATTGCA+GGG - chr3_3:14195339-14195358 Msa0443450:intron 35.0%
!! CTTGGTTGATGATATGAGAT+AGG + chr3_3:14195559-14195578 None:intergenic 35.0%
TAACAATGAAATCCGCAACA+TGG + chr3_3:14195655-14195674 None:intergenic 35.0%
AGCAGCAGGGATTAAAGTTT+GGG - chr3_3:14192971-14192990 Msa0443450:three_prime_UTR 40.0%
GTCTCAAAGATGCTCTTGAA+AGG - chr3_3:14193111-14193130 Msa0443450:three_prime_UTR 40.0%
! CAGATGTCCTTTTCTTCACA+AGG + chr3_3:14193400-14193419 None:intergenic 40.0%
GCACCTGTAATTGTAACACA+TGG + chr3_3:14193559-14193578 None:intergenic 40.0%
!! GATGTTGGAGTTGGTATAAG+TGG - chr3_3:14193607-14193626 Msa0443450:intron 40.0%
! AGTTGGTATAAGTGGACAAG+AGG - chr3_3:14193615-14193634 Msa0443450:intron 40.0%
GTTGGTATAAGTGGACAAGA+GGG - chr3_3:14193616-14193635 Msa0443450:intron 40.0%
ATGGTCACTGGAATTACCAA+AGG - chr3_3:14193710-14193729 Msa0443450:intron 40.0%
TTGATGTCTGTGTCAGTATC+AGG - chr3_3:14193863-14193882 Msa0443450:intron 40.0%
! AGACGCTCTAAACATGAGTT+AGG - chr3_3:14194007-14194026 Msa0443450:intron 40.0%
! GACGCTCTAAACATGAGTTA+GGG - chr3_3:14194008-14194027 Msa0443450:intron 40.0%
TGTCCAGCACTATAAAGTTG+AGG + chr3_3:14194398-14194417 None:intergenic 40.0%
TGATACTTTGTGGCAAAGCA+TGG - chr3_3:14194463-14194482 Msa0443450:CDS 40.0%
! GGCAAAGCATGGTTGTATTT+TGG - chr3_3:14194474-14194493 Msa0443450:CDS 40.0%
TTCCAATATGCAAAGAGTGG+AGG + chr3_3:14194500-14194519 None:intergenic 40.0%
! GACTCTTGCAGTGGTTATTT+TGG - chr3_3:14194556-14194575 Msa0443450:CDS 40.0%
TGGATGTTGTCAGATGGTAT+TGG - chr3_3:14194597-14194616 Msa0443450:intron 40.0%
GGATGTTGTCAGATGGTATT+GGG - chr3_3:14194598-14194617 Msa0443450:intron 40.0%
! TATAGTTGAGGCTGGTTACA+TGG + chr3_3:14195092-14195111 None:intergenic 40.0%
!! TTTCAAGTACTGGACTGTTC+TGG - chr3_3:14195374-14195393 Msa0443450:intron 40.0%
!! TTCAAGTACTGGACTGTTCT+GGG - chr3_3:14195375-14195394 Msa0443450:intron 40.0%
CAGAGAATTTCTCCATGTTG+CGG - chr3_3:14195640-14195659 Msa0443450:CDS 40.0%
GAGCAGCAGGGATTAAAGTT+TGG - chr3_3:14192970-14192989 Msa0443450:three_prime_UTR 45.0%
CACTGTCGAGTATGTGTACA+AGG + chr3_3:14193193-14193212 None:intergenic 45.0%
CGACAGTGAACATGAAGAAG+AGG - chr3_3:14193205-14193224 Msa0443450:three_prime_UTR 45.0%
! TGTCGTTCTTTGTTGTCGAG+TGG - chr3_3:14193346-14193365 Msa0443450:CDS 45.0%
! ACAATACCAGCCTTTTGCAG+TGG + chr3_3:14193374-14193393 None:intergenic 45.0%
TCTGACATGACACTAGCCAT+CGG - chr3_3:14193416-14193435 Msa0443450:CDS 45.0%
CAAATGGCTGATGTTGGAGT+TGG - chr3_3:14193598-14193617 Msa0443450:intron 45.0%
GTATAAGTGGACAAGAGGGT+AGG - chr3_3:14193620-14193639 Msa0443450:intron 45.0%
CACTGGAATTACCAAAGGCT+TGG - chr3_3:14193715-14193734 Msa0443450:intron 45.0%
! ATGCTTCTAGAAGCCTTCTG+AGG + chr3_3:14193985-14194004 None:intergenic 45.0%
TGCCTGGAGAATGATCTCAA+GGG + chr3_3:14194080-14194099 None:intergenic 45.0%
ATGCCTGGAGAATGATCTCA+AGG + chr3_3:14194081-14194100 None:intergenic 45.0%
! TAGTCTCTTTTGGTCATGCC+TGG + chr3_3:14194096-14194115 None:intergenic 45.0%
TAGCAAGCATAGGAGACCTT+TGG - chr3_3:14194534-14194553 Msa0443450:CDS 45.0%
TAACCACTGCAAGAGTCCAA+AGG + chr3_3:14194553-14194572 None:intergenic 45.0%
TGGCTATGGATGTTGTCAGA+TGG - chr3_3:14194591-14194610 Msa0443450:CDS 45.0%
! GGTGACTCATGCTGTCATTT+GGG - chr3_3:14194619-14194638 Msa0443450:intron 45.0%
! GTGACTCATGCTGTCATTTG+GGG - chr3_3:14194620-14194639 Msa0443450:intron 45.0%
GATGCTATACCTCAACTTCC+TGG - chr3_3:14194680-14194699 Msa0443450:intron 45.0%
GTGAATACATACCAGTAGCC+AGG + chr3_3:14194701-14194720 None:intergenic 45.0%
ATGACACTAGCCATCGGAGA+TGG - chr3_3:14193422-14193441 Msa0443450:CDS 50.0%
AGAACTCGTACCATCTCCGA+TGG + chr3_3:14193435-14193454 None:intergenic 50.0%
AGAGGGTAGGCAAGCTGTAA+TGG - chr3_3:14193633-14193652 Msa0443450:intron 50.0%
AGTTAGGGCCCAAGTTGCTT+GGG - chr3_3:14194023-14194042 Msa0443450:intron 50.0%
ACTTAGCCCCCAAGCAACTT+GGG + chr3_3:14194034-14194053 None:intergenic 50.0%
CCTGGAGAATGATCTCAAGG+GGG + chr3_3:14194078-14194097 None:intergenic 50.0%
GCCTGGAGAATGATCTCAAG+GGG + chr3_3:14194079-14194098 None:intergenic 50.0%
GGCCTCCACTCTTTGCATAT+TGG - chr3_3:14194495-14194514 Msa0443450:CDS 50.0%
AGACCTTTGGACTCTTGCAG+TGG - chr3_3:14194547-14194566 Msa0443450:CDS 50.0%
GGGTGACTCATGCTGTCATT+TGG - chr3_3:14194618-14194637 Msa0443450:intron 50.0%
TACCTCAACTTCCTGGCTAC+TGG - chr3_3:14194687-14194706 Msa0443450:intron 50.0%
TACCAGTAGCCAGGAAGTTG+AGG + chr3_3:14194692-14194711 None:intergenic 50.0%
GGCCCTGCAATGTCAAAGTT+AGG + chr3_3:14195344-14195363 None:intergenic 50.0%
! CTGTTCTGGGCATTGTTGCT+AGG - chr3_3:14195388-14195407 Msa0443450:intron 50.0%
CACAGCATTGCTTCCACGTT+TGG - chr3_3:14195420-14195439 Msa0443450:intron 50.0%
TTGAGTCGCTGAGAGCAGCA+GGG - chr3_3:14192958-14192977 Msa0443450:three_prime_UTR 55.0%
TCGAGTGGCTCCACTGCAAA+AGG - chr3_3:14193361-14193380 Msa0443450:CDS 55.0%
GAGTTAGGGCCCAAGTTGCT+TGG - chr3_3:14194022-14194041 Msa0443450:intron 55.0%
GTTAGGGCCCAAGTTGCTTG+GGG - chr3_3:14194024-14194043 Msa0443450:intron 55.0%
TTAGGGCCCAAGTTGCTTGG+GGG - chr3_3:14194025-14194044 Msa0443450:intron 55.0%
GACTTAGCCCCCAAGCAACT+TGG + chr3_3:14194035-14194054 None:intergenic 55.0%
GTTGCTTGGGGGCTAAGTCA+CGG - chr3_3:14194036-14194055 Msa0443450:intron 55.0%
CCCCCTTGAGATCATTCTCC+AGG - chr3_3:14194075-14194094 Msa0443450:intron 55.0%
GTGGCTCCACTGCAAAAGGC+TGG - chr3_3:14193365-14193384 Msa0443450:CDS 60.0%
!! CCTTCTGAGGCAGCACCCTA+CGG + chr3_3:14193972-14193991 None:intergenic 60.0%
! GTTTGGGCCCTTCTGGAGGG+CGG + chr3_3:14193932-14193951 None:intergenic 65.0%
GCCCTCCAGAAGGGCCCAAA+CGG - chr3_3:14193931-14193950 Msa0443450:intron 65.0%
GCCGTTTGGGCCCTTCTGGA+GGG + chr3_3:14193935-14193954 None:intergenic 65.0%
AGAAGGGCCCAAACGGCCCT+GGG - chr3_3:14193938-14193957 Msa0443450:intron 65.0%
! TCTGAGGCAGCACCCTACGG+AGG + chr3_3:14193969-14193988 None:intergenic 65.0%
!! CCGTAGGGTGCTGCCTCAGA+AGG - chr3_3:14193969-14193988 Msa0443450:intron 65.0%
AGGGCACACCGCCCTCCAGA+AGG - chr3_3:14193921-14193940 Msa0443450:intron 70.0%
GGGCACACCGCCCTCCAGAA+GGG - chr3_3:14193922-14193941 Msa0443450:intron 70.0%
GGCCGTTTGGGCCCTTCTGG+AGG + chr3_3:14193936-14193955 None:intergenic 70.0%
CAGGGCCGTTTGGGCCCTTC+TGG + chr3_3:14193939-14193958 None:intergenic 70.0%
CAGAAGGGCCCAAACGGCCC+TGG - chr3_3:14193937-14193956 Msa0443450:intron 70.0%
GGACGCGCCCAGGGCCGTTT+GGG + chr3_3:14193948-14193967 None:intergenic 75.0%
AGGACGCGCCCAGGGCCGTT+TGG + chr3_3:14193949-14193968 None:intergenic 75.0%
CCCTACGGAGGACGCGCCCA+GGG + chr3_3:14193957-14193976 None:intergenic 75.0%
CCCTGGGCGCGTCCTCCGTA+GGG - chr3_3:14193954-14193973 Msa0443450:intron 75.0%
ACCCTACGGAGGACGCGCCC+AGG + chr3_3:14193958-14193977 None:intergenic 75.0%
! GCCCTGGGCGCGTCCTCCGT+AGG - chr3_3:14193953-14193972 Msa0443450:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 14192958 14195907 14192958 ID=Msa0443450;Name=Msa0443450
chr3_3 mRNA 14192958 14195907 14192958 ID=Msa0443450-mRNA-1;Parent=Msa0443450;Name=Msa0443450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=104|1|1|1|1|1|5|325|396
chr3_3 exon 14192958 14193505 14192958 ID=Msa0443450-mRNA-1:exon:3168;Parent=Msa0443450-mRNA-1
chr3_3 exon 14194157 14194615 14194157 ID=Msa0443450-mRNA-1:exon:3167;Parent=Msa0443450-mRNA-1
chr3_3 exon 14195071 14195290 14195071 ID=Msa0443450-mRNA-1:exon:3166;Parent=Msa0443450-mRNA-1
chr3_3 exon 14195422 14195545 14195422 ID=Msa0443450-mRNA-1:exon:3165;Parent=Msa0443450-mRNA-1
chr3_3 exon 14195639 14195907 14195639 ID=Msa0443450-mRNA-1:exon:3164;Parent=Msa0443450-mRNA-1
chr3_3 five_prime_UTR 14195804 14195907 14195804 ID=Msa0443450-mRNA-1:five_prime_utr;Parent=Msa0443450-mRNA-1
chr3_3 CDS 14195639 14195803 14195639 ID=Msa0443450-mRNA-1:cds;Parent=Msa0443450-mRNA-1
chr3_3 CDS 14195422 14195545 14195422 ID=Msa0443450-mRNA-1:cds;Parent=Msa0443450-mRNA-1
chr3_3 CDS 14195071 14195290 14195071 ID=Msa0443450-mRNA-1:cds;Parent=Msa0443450-mRNA-1
chr3_3 CDS 14194157 14194615 14194157 ID=Msa0443450-mRNA-1:cds;Parent=Msa0443450-mRNA-1
chr3_3 CDS 14193283 14193505 14193283 ID=Msa0443450-mRNA-1:cds;Parent=Msa0443450-mRNA-1
chr3_3 three_prime_UTR 14192958 14193282 14192958 ID=Msa0443450-mRNA-1:three_prime_utr;Parent=Msa0443450-mRNA-1
Gene Sequence

>Msa0443450

ATGACTCAAATTATTATTAACAGTAATAGTAAAGTGTCATGTAGAAAAAGTCTCAAAGATGCTCTTGAAAGGTCTAGAAAACTTGATGCAGTTGCAACACAGATAGCTTTGATTATTGATGGGGGAAGCCTTGTACACATACTCGACAGTGAACATGAAGAAGAGTTGTTTCAACTTGCAAGTTTGTGTTCTGTCGTTCTTTGTTGTCGAGTGGCTCCACTGCAAAAGGCTGGTATTGTTTCCCTTGTGAAGAAAAGGACATCTGACATGACACTAGCCATCGGAGATGGTGCTAATGATGTTTCAATGATTCAAATGGCTGATGTTGGAGTTGGTATAAGTGGACAAGAGGGTAGGCAAGCTGTAATGGCATCAGATTTTGCAATGGGACAATTTAGGTTTTTAGTTCCTCTCTTATTGATACATGGTCACTGGAATTACCAAAGGCTTGGTTACATGATATTATACAATTTCTACAGAAATGCAATCCTTGTTCTTGTCCTATTTTGGTATGTTCTCTACACTGCCTTCACTTCAACAACTGCAATAAATGAATGGAGCTCCACATTGTACTCAATAATCTACAGTGCACTTCCAACTATTATTGTTGGAATTCTTGACAAAGATCTTAGTAGAAGCACTCTCCTAAAGTATCCTCAACTTTATAGTGCTGGACAAAGAGATGAAGCCTACAACAAGAAATTGTTTATGTTAACAATGGCTGATACTTTGTGGCAAAGCATGGTTGTATTTTGGCCTCCACTCTTTGCATATTGGAAAAGCACTATTGATATAGCAAGCATAGGAGACCTTTGGACTCTTGCAGTGGTTATTTTGGTCAATTTACATTTGGCTATGGATGTTGTCAGATGGTATTGGGTGACTCATGCTGTCATTTGGGGATCTATTCTTGCTACATTCATTTCTGTCATGATCATTGATGCTATACCTCAACTTCCTGGCTACTGGGCCTTCTTTCATGTTTCAAGTACTGGACTGTTCTGGGCATTGTTGCTAGGAATTGTGATCACAGCATTGCTTCCACGTTTGGTTGTAAAATATATTTATCAATATTATTTTCCTAGTGATATTCAAATTTCTAGAGAAGCTGAAAAGATGAGAGAATATCAAAGAGTTGCTGAAAATGGTCAAATAGAAATGCTTCCTATCTCATATCATCAACCAAGATAA

Protein sequence

>Msa0443450

MTQIIINSNSKVSCRKSLKDALERSRKLDAVATQIALIIDGGSLVHILDSEHEEELFQLASLCSVVLCCRVAPLQKAGIVSLVKKRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAILVLVLFWYVLYTAFTSTTAINEWSSTLYSIIYSALPTIIVGILDKDLSRSTLLKYPQLYSAGQRDEAYNKKLFMLTMADTLWQSMVVFWPPLFAYWKSTIDIASIGDLWTLAVVILVNLHLAMDVVRWYWVTHAVIWGSILATFISVMIIDAIPQLPGYWAFFHVSSTGLFWALLLGIVITALLPRLVVKYIYQYYFPSDIQISREAEKMREYQRVAENGQIEMLPISYHQPR*