AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0303990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303990 MtrunA17_Chr2g0331241 89.021 337 22 2 1 337 1 322 0.0 591
Msa0303990 MtrunA17_Chr1g0163701 83.333 90 15 0 64 153 79 168 8.80e-40 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303990 AT3G16230.7 39.823 339 128 9 1 337 1 265 2.62e-57 192
Msa0303990 AT3G16230.4 39.823 339 128 9 1 337 1 265 2.62e-57 192
Msa0303990 AT3G16230.6 39.823 339 128 9 1 337 1 265 2.62e-57 192
Msa0303990 AT3G16230.9 39.823 339 128 9 1 337 1 265 2.62e-57 192
Msa0303990 AT3G16230.5 39.823 339 128 9 1 337 1 265 3.27e-57 191
Msa0303990 AT3G16230.11 39.823 339 128 9 1 337 1 265 3.27e-57 191
Msa0303990 AT3G16230.8 39.823 339 128 9 1 337 1 265 3.27e-57 191
Msa0303990 AT3G16230.10 39.823 339 128 9 1 337 1 265 2.92e-56 191
Msa0303990 AT3G16230.2 39.823 339 128 9 1 337 1 265 2.92e-56 191
Msa0303990 AT3G16230.1 39.823 339 128 9 1 337 1 265 2.92e-56 191
Msa0303990 AT3G16230.3 42.268 291 99 7 49 337 2 225 2.91e-53 182
Msa0303990 AT3G16230.12 42.268 291 99 7 49 337 2 225 2.91e-53 182
Msa0303990 AT3G16230.13 51.282 156 59 2 183 337 2 141 3.27e-37 137

Find 139 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTAAACCTAACGGAATT+TGG 0.177827 2_3:+61301544 Msa0303990:five_prime_UTR
CACCAACCCTATACAGTTTC+AGG 0.189343 2_3:+61301840 Msa0303990:CDS
TCCTGTCTCAATAAGATTAA+AGG 0.213951 2_3:+61306122 Msa0303990:three_prime_UTR
TGATTATGACAATCAAATTA+AGG 0.249262 2_3:+61308330 Msa0303990:three_prime_UTR
AAGCAAATCAATAATAGATT+TGG 0.252379 2_3:-61308214 None:intergenic
GATTAACTTTAACTGATTTA+CGG 0.287608 2_3:-61305397 None:intergenic
AATCAAAATTGTTCGTAAAC+TGG 0.298281 2_3:-61301630 None:intergenic
TGCTAGTTCCAGCCAATTGC+AGG 0.300811 2_3:+61302949 Msa0303990:CDS
AAATTCCGTTAGGTTTAGTT+TGG 0.316623 2_3:-61301542 None:intergenic
CAGGGACAGAGAACTTATTA+TGG 0.320643 2_3:+61302073 Msa0303990:intron
ACAGTTGACACAGTTTCTTA+TGG 0.320965 2_3:+61307908 Msa0303990:three_prime_UTR
GACAGCTACCGAGGTCTTGC+AGG 0.328438 2_3:+61305983 Msa0303990:CDS
TATGCTCCTGTAGAAGAAAT+TGG 0.350687 2_3:+61306617 Msa0303990:three_prime_UTR
TGTGTTTATAACAGACAGTT+AGG 0.363036 2_3:+61305141 Msa0303990:intron
TTCAGCTTCAGAGAAGATTC+AGG 0.376123 2_3:+61304830 Msa0303990:CDS
GAAAGTAGCTGCCGAAGCTT+TGG 0.376729 2_3:+61302907 Msa0303990:CDS
CGAAACATATTCAAGCAGTA+TGG 0.390783 2_3:+61307591 Msa0303990:three_prime_UTR
TTTGGTGAAGTCAAATATAA+AGG 0.394489 2_3:-61308099 None:intergenic
AGCATACAGGACACGGGCTT+TGG 0.394520 2_3:-61306600 None:intergenic
ATTAGTATCCTCAGCCTCAT+TGG 0.399183 2_3:-61305303 None:intergenic
TGACATTCACACTGTCGATT+AGG 0.399306 2_3:-61307941 None:intergenic
ATATGCTGATAACTTATTGA+TGG 0.399540 2_3:+61307999 Msa0303990:three_prime_UTR
GAAGGAACCTGAAACTGTAT+AGG 0.399869 2_3:-61301847 None:intergenic
AGAAAACAATGAATTCTATC+TGG 0.400574 2_3:+61302164 Msa0303990:CDS
GATTATGACAATCAAATTAA+GGG 0.403008 2_3:+61308331 Msa0303990:three_prime_UTR
AACATCACCCTGCAATTGGC+TGG 0.405452 2_3:-61302957 None:intergenic
GTGGGAGCCTTGGATGCTTT+AGG 0.414781 2_3:-61305449 None:intergenic
ATCAATAAGTTATCAGCATA+TGG 0.415798 2_3:-61307997 None:intergenic
TTGATATCTTTGAGGAATCA+TGG 0.418351 2_3:+61307741 Msa0303990:three_prime_UTR
GGCTCCCACTTCATCTGGTA+TGG 0.419247 2_3:+61305463 Msa0303990:CDS
CCTGTCTCAATAAGATTAAA+GGG 0.420998 2_3:+61306123 Msa0303990:three_prime_UTR
CCTCGGTAGCTGTCTTAATT+CGG 0.421339 2_3:-61305974 None:intergenic
CCCTTTAATCTTATTGAGAC+AGG 0.422540 2_3:-61306123 None:intergenic
TTTCAACATCACCCTGCAAT+TGG 0.428767 2_3:-61302961 None:intergenic
TCCAAGGCTCCCACTTCATC+TGG 0.429819 2_3:+61305458 Msa0303990:CDS
GAACTAGCATTAGTCGAAAC+AGG 0.431899 2_3:-61302190 None:intergenic
AGAGTGCAATAACTGAGATT+TGG 0.436297 2_3:-61308042 None:intergenic
CGCTGGTGTTCAGGACAAAT+CGG 0.437383 2_3:+61307541 Msa0303990:intron
TGTTAAAGCTGGACTTGTCT+TGG 0.438646 2_3:+61306839 Msa0303990:three_prime_UTR
CTTGGAATTCATTCATTGAT+CGG 0.439591 2_3:+61301672 Msa0303990:five_prime_UTR
GAGTATATCCTCAGAAGTTA+TGG 0.441645 2_3:+61306083 Msa0303990:three_prime_UTR
GTGAGGGAATGATAGGTTGC+AGG 0.443317 2_3:+61301696 Msa0303990:exon
AAGGAACCTGAAACTGTATA+GGG 0.443866 2_3:-61301846 None:intergenic
ACCAGATGAAGTGGGAGCCT+TGG 0.448923 2_3:-61305459 None:intergenic
GGATCAATTGTCAAAGGAAA+AGG 0.456421 2_3:+61305340 Msa0303990:CDS
CTCAGAAGTTATGGAAGCAT+TGG 0.458690 2_3:+61306092 Msa0303990:three_prime_UTR
TACTGTGAGGTGAAATGTCT+TGG 0.460582 2_3:-61305925 None:intergenic
GTAATAAAACTAACGGTGTT+CGG 0.465041 2_3:-61301581 None:intergenic
CTCAATAAGATTAAAGGGAC+TGG 0.465814 2_3:+61306128 Msa0303990:three_prime_UTR
TCACTGCCAATTTCTTCTAC+AGG 0.471187 2_3:-61306623 None:intergenic
AAAGCATTCAATTTCTGTGC+AGG 0.476222 2_3:+61303018 Msa0303990:CDS
ATCTATTGAAATGCCTTCAA+TGG 0.478396 2_3:-61304799 None:intergenic
TATTACCTCATTGTTGGACG+TGG 0.479167 2_3:+61301598 Msa0303990:five_prime_UTR
TGAAGTTACGAAAGTGTCCT+TGG 0.479472 2_3:+61301654 Msa0303990:five_prime_UTR
GCAGTATGGATCAGAGGACT+GGG 0.480693 2_3:+61307605 Msa0303990:three_prime_UTR
ATTGATGCATATGTTAAAGC+TGG 0.482111 2_3:+61306828 Msa0303990:three_prime_UTR
TCTGGTTACACTACCTAAGT+TGG 0.485810 2_3:-61307822 None:intergenic
TAGAGTGATTGATATCTTTG+AGG 0.489178 2_3:+61307733 Msa0303990:three_prime_UTR
TCTACTTATCGTTCTGACAT+TGG 0.489890 2_3:+61308062 Msa0303990:three_prime_UTR
AAAGATAGAAGAGGAGACGA+AGG 0.492432 2_3:+61304033 Msa0303990:CDS
GGAGATAGAGTTCAAGAAGT+GGG 0.492594 2_3:+61302845 Msa0303990:CDS
CGGGATGGATGGCCAATGGA+AGG 0.496429 2_3:-61305196 None:intergenic
GATCGGAGTGAGGGAATGAT+AGG 0.499388 2_3:+61301689 Msa0303990:exon
GATGTCATCCAAATTCCGTT+AGG 0.499674 2_3:-61301552 None:intergenic
GAAGTGGGTTGTAGCACATC+CGG 0.505932 2_3:+61302860 Msa0303990:CDS
AGCAGTATGGATCAGAGGAC+TGG 0.508829 2_3:+61307604 Msa0303990:three_prime_UTR
ACACTTCGTATCCCTTCCAT+TGG 0.511276 2_3:+61305184 Msa0303990:CDS
TTGGTGACGGCAAAGAATCC+AGG 0.518098 2_3:-61308023 None:intergenic
TTTCTTCTACAGGAGCATAC+AGG 0.518122 2_3:-61306613 None:intergenic
TGATATCTTTGAGGAATCAT+GGG 0.523434 2_3:+61307742 Msa0303990:three_prime_UTR
CTGAAACTGTATAGGGTTGG+TGG 0.523925 2_3:-61301839 None:intergenic
TAGTGTAACCAGAATAAAAG+TGG 0.524240 2_3:+61307832 Msa0303990:three_prime_UTR
ATGCTTGTCGACACCAACTT+AGG 0.529707 2_3:+61307809 Msa0303990:three_prime_UTR
ACTGTGAGGTGAAATGTCTT+GGG 0.535454 2_3:-61305924 None:intergenic
GCGACAGTTGAGTCAAAAGA+TGG 0.541202 2_3:+61302824 Msa0303990:CDS
TGAATGCAAGGCATAGGAAA+AGG 0.541594 2_3:+61307395 Msa0303990:three_prime_UTR
GTAGAAGAAATTGGCAGTGA+GGG 0.545061 2_3:+61306626 Msa0303990:three_prime_UTR
AAGTGGGTACTAGTATTGCA+TGG 0.545943 2_3:+61307849 Msa0303990:three_prime_UTR
ATCTTGCAGGAATGCATGAA+AGG 0.551118 2_3:+61306569 Msa0303990:intron
GGAATGCATGAAAGGTTCGT+TGG 0.558639 2_3:+61306577 Msa0303990:intron
AAATATGAACTCAGAATGAG+TGG 0.564099 2_3:+61308131 Msa0303990:three_prime_UTR
CTACAGGAGCATACAGGACA+CGG 0.565186 2_3:-61306607 None:intergenic
AGAAACTAACTCGGGATGGA+TGG 0.565961 2_3:-61305207 None:intergenic
TGTTCCCATACCAGATGAAG+TGG 0.569777 2_3:-61305468 None:intergenic
AAGCATTTACATTGGCTGCA+AGG 0.571011 2_3:-61307792 None:intergenic
TTCATTCATTGATCGGAGTG+AGG 0.571872 2_3:+61301679 Msa0303990:five_prime_UTR
GGGATGGATGGCCAATGGAA+GGG 0.572979 2_3:-61305195 None:intergenic
GATGTTGAAAACAAAGTGCT+AGG 0.573948 2_3:+61302974 Msa0303990:CDS
TCATTCATTGATCGGAGTGA+GGG 0.576475 2_3:+61301680 Msa0303990:five_prime_UTR
GCTCCCACTTCATCTGGTAT+GGG 0.576538 2_3:+61305464 Msa0303990:CDS
CGATCAATGAATGAATTCCA+AGG 0.577601 2_3:-61301671 None:intergenic
CACCGACTCCAATGAGGCTG+AGG 0.580966 2_3:+61305295 Msa0303990:CDS
ATCCTCAGCCTCATTGGAGT+CGG 0.581486 2_3:-61305297 None:intergenic
AACTCGGGATGGATGGCCAA+TGG 0.581549 2_3:-61305200 None:intergenic
GTTTAGAAACTAACTCGGGA+TGG 0.583653 2_3:-61305211 None:intergenic
CTTTGATGAATGCAAGGCAT+AGG 0.584092 2_3:+61307389 Msa0303990:three_prime_UTR
TTATGCACCTAAAGCATCCA+AGG 0.584598 2_3:+61305442 Msa0303990:CDS
TGATGCTAAACAAGGACTGA+AGG 0.585400 2_3:+61306866 Msa0303990:three_prime_UTR
CAATGCTTCCATAACTTCTG+AGG 0.585425 2_3:-61306091 None:intergenic
AGAAGTGGATCAATTGTCAA+AGG 0.586169 2_3:+61305334 Msa0303990:CDS
ATTACCTCATTGTTGGACGT+GGG 0.586930 2_3:+61301599 Msa0303990:five_prime_UTR
ACTAATGCTAGTTCTTGTGA+AGG 0.587218 2_3:+61302199 Msa0303990:CDS
TGGAGATAGAGTTCAAGAAG+TGG 0.588662 2_3:+61302844 Msa0303990:CDS
GATTAGTTTAGAAACTAACT+CGG 0.588881 2_3:-61305216 None:intergenic
TAGGTTGCAGGTCTTTGTTG+AGG 0.589954 2_3:+61301708 Msa0303990:CDS
ATTAGTTTAGAAACTAACTC+GGG 0.590655 2_3:-61305215 None:intergenic
TGATAACTTATTGATGGACC+TGG 0.593794 2_3:+61308005 Msa0303990:three_prime_UTR
TCATTGTTGGACGTGGGAGT+AGG 0.598329 2_3:+61301605 Msa0303990:five_prime_UTR
ATCATCCAAACTAAACCTAA+CGG 0.600179 2_3:+61301537 Msa0303990:five_prime_UTR
AGTGGGTACTAGTATTGCAT+GGG 0.602183 2_3:+61307850 Msa0303990:three_prime_UTR
TGGTGGTAAATCTGAGAAGT+CGG 0.602602 2_3:-61301822 None:intergenic
AACCTGAAACTGTATAGGGT+TGG 0.604062 2_3:-61301842 None:intergenic
TTCTGAGGATATACTCTGCA+CGG 0.604969 2_3:-61306076 None:intergenic
ATGCCTTGCATTCATCAAAG+TGG 0.607666 2_3:-61307386 None:intergenic
CAGTACTCATGCTTAAGCTG+TGG 0.613263 2_3:+61305943 Msa0303990:CDS
CAATGAGGTAATAAAACTAA+CGG 0.613554 2_3:-61301588 None:intergenic
AGTATGGATCAGAGGACTGG+GGG 0.620757 2_3:+61307607 Msa0303990:three_prime_UTR
ATTCAAGCAGTATGGATCAG+AGG 0.622044 2_3:+61307599 Msa0303990:three_prime_UTR
CCGAATTAAGACAGCTACCG+AGG 0.622613 2_3:+61305974 Msa0303990:CDS
ATGCTCATTAGAGATAGTGC+CGG 0.623255 2_3:-61302879 None:intergenic
ACGCCACTTTGATGAATGCA+AGG 0.630440 2_3:+61307383 Msa0303990:three_prime_UTR
GTGTCGACAAGCATTTACAT+TGG 0.634419 2_3:-61307800 None:intergenic
AAAACTTGCCTGCAAGACCT+CGG 0.637978 2_3:-61305991 None:intergenic
AGTGTAACCAGAATAAAAGT+GGG 0.641790 2_3:+61307833 Msa0303990:three_prime_UTR
GCTAGTTCCAGCCAATTGCA+GGG 0.644277 2_3:+61302950 Msa0303990:CDS
TACAGGAGCATACAGGACAC+GGG 0.645018 2_3:-61306606 None:intergenic
TAGAAGAAATTGGCAGTGAG+GGG 0.645125 2_3:+61306627 Msa0303990:three_prime_UTR
TACTCCCACGTCCAACAATG+AGG 0.647911 2_3:-61301603 None:intergenic
TGTAGAAGAAATTGGCAGTG+AGG 0.649108 2_3:+61306625 Msa0303990:three_prime_UTR
TTAGGTGCATAACTGACTAG+TGG 0.651177 2_3:-61305431 None:intergenic
TTGGAGAATGATGCTAAACA+AGG 0.654196 2_3:+61306858 Msa0303990:three_prime_UTR
GATTCAGGCTATAATTGATG+AGG 0.654453 2_3:+61304845 Msa0303990:CDS
CAGTATGGATCAGAGGACTG+GGG 0.660986 2_3:+61307606 Msa0303990:three_prime_UTR
TCTTGACACCGACTCCAATG+AGG 0.662276 2_3:+61305289 Msa0303990:CDS
CAATAACTGAGATTTGGTGA+CGG 0.673108 2_3:-61308036 None:intergenic
GTTCCCATACCAGATGAAGT+GGG 0.681909 2_3:-61305467 None:intergenic
GTATGGATCAGAGGACTGGG+GGG 0.685351 2_3:+61307608 Msa0303990:three_prime_UTR
CATATGGTGCAATATCAGTG+AGG 0.744489 2_3:-61307981 None:intergenic
GCTTAAGCATGAGTACTGTG+AGG 0.751710 2_3:-61305938 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GCTTAAATTTTTTTTTTTTT+TGG + chr2_3:61302042-61302061 Msa0303990:intron 10.0%
!! TTATATAAAAATCATATGAA+AGG + chr2_3:61303725-61303744 Msa0303990:intron 10.0%
!! TATATAAAAATCATATGAAA+GGG + chr2_3:61303726-61303745 Msa0303990:intron 10.0%
!!! AAAATTAATTTAACTTTTTG+GGG + chr2_3:61304454-61304473 Msa0303990:intron 10.0%
!!! TTCATATTTTAAATATGATT+TGG - chr2_3:61308120-61308139 None:intergenic 10.0%
!! AATTGTGAAAATAAGTTAAA+AGG + chr2_3:61302582-61302601 Msa0303990:intron 15.0%
!!! TTTGGTATCTTTTATATTTT+TGG + chr2_3:61302734-61302753 Msa0303990:intron 15.0%
!!! GTTAAGATTTGTATTTTATT+TGG + chr2_3:61303161-61303180 Msa0303990:intron 15.0%
!!! TCATACTTAATAATTTTTCA+GGG + chr2_3:61303997-61304016 Msa0303990:intron 15.0%
!! AAAAAAAAACAAATTTCTTG+AGG - chr2_3:61305081-61305100 None:intergenic 15.0%
!! GAATAATATAAGTATGTATT+GGG - chr2_3:61305707-61305726 None:intergenic 15.0%
!! TGAATAATATAAGTATGTAT+TGG - chr2_3:61305708-61305727 None:intergenic 15.0%
!! AACTATTCATATTTCATATA+TGG - chr2_3:61306676-61306695 None:intergenic 15.0%
!!! GTATTACAAAGTTTTTTTTT+TGG + chr2_3:61306704-61306723 Msa0303990:intron 15.0%
!! AAATATACAAATGTAATTCA+TGG - chr2_3:61307090-61307109 None:intergenic 15.0%
!! TCTAAAAGAAAAGATAAAAA+GGG - chr2_3:61307429-61307448 None:intergenic 15.0%
!!! AAATTTGATTTCGTTGTTAT+CGG + chr2_3:61301753-61301772 Msa0303990:intron 20.0%
!!! TTTAAGCTGTGATTTTATAA+TGG + chr2_3:61302096-61302115 Msa0303990:CDS 20.0%
!!! TTAAGCTGTGATTTTATAAT+GGG + chr2_3:61302097-61302116 Msa0303990:CDS 20.0%
!!! TTTTATCTGTTCTTTAGTTA+TGG + chr2_3:61302378-61302397 Msa0303990:intron 20.0%
!!! TTATATTTTTGGCTATGTAA+AGG + chr2_3:61302745-61302764 Msa0303990:intron 20.0%
!! AAGAACAAATGAACAAATAT+TGG - chr2_3:61303115-61303134 None:intergenic 20.0%
!!! GATTTTTATATAATACCAGT+TGG - chr2_3:61303718-61303737 None:intergenic 20.0%
!!! CTCATACTTAATAATTTTTC+AGG + chr2_3:61303996-61304015 Msa0303990:intron 20.0%
!!! CATACTTAATAATTTTTCAG+GGG + chr2_3:61303998-61304017 Msa0303990:intron 20.0%
!!! ATTATGTTATTGTCTTTTGA+TGG - chr2_3:61304266-61304285 None:intergenic 20.0%
!! TTTGAATAACACTATACATA+TGG - chr2_3:61304377-61304396 None:intergenic 20.0%
!!! AATTTTCAACACACTATTTT+GGG + chr2_3:61305239-61305258 Msa0303990:CDS 20.0%
!! TACTAATGATAAAAAAGAAG+TGG + chr2_3:61305319-61305338 Msa0303990:CDS 20.0%
!!! GATTAACTTTAACTGATTTA+CGG - chr2_3:61305400-61305419 None:intergenic 20.0%
!! AAAAATGAAAAAGAAATCAG+TGG - chr2_3:61305868-61305887 None:intergenic 20.0%
!! GCATTTACTAAATTTATAGA+AGG + chr2_3:61306252-61306271 Msa0303990:intron 20.0%
!! TGAAGGTAAATTAAATTTAG+CGG + chr2_3:61306883-61306902 Msa0303990:intron 20.0%
!!! AAAGTAATCATATTGATAGT+AGG - chr2_3:61306965-61306984 None:intergenic 20.0%
!! TACTATCAATATGATTACTT+TGG + chr2_3:61306964-61306983 Msa0303990:intron 20.0%
!! CAGATAACAAAATGAAATTA+TGG - chr2_3:61307031-61307050 None:intergenic 20.0%
!!! TTTCCAGCTTTAAATTATAA+AGG + chr2_3:61307172-61307191 Msa0303990:intron 20.0%
!!! AAACCTTTATAATTTAAAGC+TGG - chr2_3:61307178-61307197 None:intergenic 20.0%
!!! GCTTTAAATTATAAAGGTTT+TGG + chr2_3:61307178-61307197 Msa0303990:intron 20.0%
!! GTCTAAAAGAAAAGATAAAA+AGG - chr2_3:61307430-61307449 None:intergenic 20.0%
!!! AACAATGTTTTAAAAAGCAA+GGG - chr2_3:61307489-61307508 None:intergenic 20.0%
!!! TAACAATGTTTTAAAAAGCA+AGG - chr2_3:61307490-61307509 None:intergenic 20.0%
!! AAGCAAATCAATAATAGATT+TGG - chr2_3:61308217-61308236 None:intergenic 20.0%
!!! ATTTAGTTTGTTTTCTTTCA+TGG - chr2_3:61308251-61308270 None:intergenic 20.0%
! CAATGAGGTAATAAAACTAA+CGG - chr2_3:61301591-61301610 None:intergenic 25.0%
!!! TAGTTTTATTACCTCATTGT+TGG + chr2_3:61301592-61301611 Msa0303990:five_prime_UTR 25.0%
! AATCAAAATTGTTCGTAAAC+TGG - chr2_3:61301633-61301652 None:intergenic 25.0%
! TAATGTGATAAAAAGCAAGA+AGG - chr2_3:61301868-61301887 None:intergenic 25.0%
! TATTTCTTTCCATAAGCTAA+GGG - chr2_3:61301940-61301959 None:intergenic 25.0%
! ATATTTCTTTCCATAAGCTA+AGG - chr2_3:61301941-61301960 None:intergenic 25.0%
!! ATTTATTTGAGTTTATCTGC+TGG - chr2_3:61301965-61301984 None:intergenic 25.0%
!!! TTTTTTTTTGGTTTTGCAAC+AGG + chr2_3:61302054-61302073 Msa0303990:intron 25.0%
!!! TTTTTTTTGGTTTTGCAACA+GGG + chr2_3:61302055-61302074 Msa0303990:intron 25.0%
!! TTGTTTTCTGCTTATTGTTA+TGG - chr2_3:61302153-61302172 None:intergenic 25.0%
! AGAAAACAATGAATTCTATC+TGG + chr2_3:61302164-61302183 Msa0303990:CDS 25.0%
!!! TGTATTTTTTGTCCAACTTA+TGG + chr2_3:61302224-61302243 Msa0303990:intron 25.0%
!!! GTATTTTTTGTCCAACTTAT+GGG + chr2_3:61302225-61302244 Msa0303990:intron 25.0%
!! ATCTGTTTCAATATTTTCGA+AGG - chr2_3:61302347-61302366 None:intergenic 25.0%
! CGAAAATATTGAAACAGATA+CGG + chr2_3:61302348-61302367 Msa0303990:intron 25.0%
! ATATATAGTTCCATGTTCTT+AGG + chr2_3:61302405-61302424 Msa0303990:intron 25.0%
! TATATAGTTCCATGTTCTTA+GGG + chr2_3:61302406-61302425 Msa0303990:intron 25.0%
!!! CTTATTTTCACAATTTTTCC+AGG - chr2_3:61302577-61302596 None:intergenic 25.0%
!!! CTTATTTTCATAAGTTTTCC+AGG - chr2_3:61302612-61302631 None:intergenic 25.0%
! AAAATTCTCATTCGATCTAA+GGG - chr2_3:61302717-61302736 None:intergenic 25.0%
!! TATATTTTCATCCAAAGCTT+CGG - chr2_3:61302921-61302940 None:intergenic 25.0%
! TCATTTGTTCTTTAATGTGT+TGG + chr2_3:61303123-61303142 Msa0303990:intron 25.0%
!! GTAACTTTCAATATTGATTG+AGG - chr2_3:61303234-61303253 None:intergenic 25.0%
! TTATTTCCACTGTAAATTGT+GGG - chr2_3:61303429-61303448 None:intergenic 25.0%
! TTTATTTCCACTGTAAATTG+TGG - chr2_3:61303430-61303449 None:intergenic 25.0%
!! TAAAAAAACCTATGTGCTTT+TGG + chr2_3:61303538-61303557 Msa0303990:intron 25.0%
!! TCTCTATTTCGTTTTATCAA+AGG + chr2_3:61303637-61303656 Msa0303990:CDS 25.0%
!! TTTCGTTTTATCAAAGGAAA+AGG + chr2_3:61303643-61303662 Msa0303990:CDS 25.0%
!! TTCGTTTTATCAAAGGAAAA+GGG + chr2_3:61303644-61303663 Msa0303990:CDS 25.0%
! TAGTTATAGATAGACAGAAA+AGG + chr2_3:61303807-61303826 Msa0303990:intron 25.0%
! GAATATTTACTATTCCTGAT+AGG - chr2_3:61303846-61303865 None:intergenic 25.0%
! ATCAGGAATAGTAAATATTC+AGG + chr2_3:61303846-61303865 Msa0303990:intron 25.0%
! ATAACAATAGCAACAAGATT+TGG - chr2_3:61303913-61303932 None:intergenic 25.0%
!! TGAGTTTATCAGTAAGTTTT+TGG + chr2_3:61304087-61304106 Msa0303990:intron 25.0%
!!! ATATTTTTTTTCCCCTACTA+TGG + chr2_3:61304153-61304172 Msa0303990:intron 25.0%
!! CATAAGATTGAGTCTTATAT+TGG + chr2_3:61304299-61304318 Msa0303990:intron 25.0%
!! CTTTAAGAGAAATACTTACT+TGG - chr2_3:61304532-61304551 None:intergenic 25.0%
! AAGTATTTCTCTTAAAGTAG+AGG + chr2_3:61304535-61304554 Msa0303990:intron 25.0%
! TATTTCTCATATCATCTAAG+AGG + chr2_3:61304758-61304777 Msa0303990:intron 25.0%
! TAATGAGTAGAATCCAAATA+TGG - chr2_3:61305004-61305023 None:intergenic 25.0%
! AAACTATATGAGAAACAACT+AGG - chr2_3:61305041-61305060 None:intergenic 25.0%
!! GTTTCTCATATAGTTTTTCT+AGG + chr2_3:61305045-61305064 Msa0303990:intron 25.0%
! AAGAAATTAGTCACAAACTA+CGG + chr2_3:61305104-61305123 Msa0303990:intron 25.0%
!! ATTAGTTTAGAAACTAACTC+GGG - chr2_3:61305218-61305237 None:intergenic 25.0%
!!! GATTAGTTTAGAAACTAACT+CGG - chr2_3:61305219-61305238 None:intergenic 25.0%
!! CAATTTTCAACACACTATTT+TGG + chr2_3:61305238-61305257 Msa0303990:CDS 25.0%
!! AAATTTTCTTTAGCTAGTGT+TGG + chr2_3:61305586-61305605 Msa0303990:intron 25.0%
!! TTCACTATAATTTTACACTC+TGG + chr2_3:61305633-61305652 Msa0303990:intron 25.0%
!! TCACTATAATTTTACACTCT+GGG + chr2_3:61305634-61305653 Msa0303990:intron 25.0%
! AGATGATTAACTAGAATTCT+TGG - chr2_3:61305666-61305685 None:intergenic 25.0%
! TTAATCATCTATGAAAGTGA+TGG + chr2_3:61305676-61305695 Msa0303990:intron 25.0%
! AAGCATAAACATTTCTTGAT+GGG - chr2_3:61305783-61305802 None:intergenic 25.0%
! AAAGCATAAACATTTCTTGA+TGG - chr2_3:61305784-61305803 None:intergenic 25.0%
!!! TTTTTCATTTTTACAGACCT+GGG + chr2_3:61305876-61305895 Msa0303990:intron 25.0%
! AAGATTTCCAATATGTATGT+TGG + chr2_3:61306465-61306484 Msa0303990:intron 25.0%
!!! TTTGTTTGATAGCTTTGATA+AGG + chr2_3:61306532-61306551 Msa0303990:intron 25.0%
! TAGTATGTATAATCAAAACC+AGG - chr2_3:61306768-61306787 None:intergenic 25.0%
!! AATATGATTACTTTGGTTCA+AGG + chr2_3:61306971-61306990 Msa0303990:intron 25.0%
!! TATAATTTAAAGCTGGAAAG+AGG - chr2_3:61307171-61307190 None:intergenic 25.0%
! ACGAGAAAAAAAACTAAAGA+AGG + chr2_3:61307226-61307245 Msa0303990:intron 25.0%
!!! AAAGTACAGTCTTATTATGA+AGG - chr2_3:61307288-61307307 None:intergenic 25.0%
!! AGATTTTCATTTGATGAGAA+TGG + chr2_3:61307663-61307682 Msa0303990:three_prime_UTR 25.0%
! ATCAATAAGTTATCAGCATA+TGG - chr2_3:61308000-61308019 None:intergenic 25.0%
! ATATGCTGATAACTTATTGA+TGG + chr2_3:61307999-61308018 Msa0303990:three_prime_UTR 25.0%
! TTTGGTGAAGTCAAATATAA+AGG - chr2_3:61308102-61308121 None:intergenic 25.0%
ATCATCCAAACTAAACCTAA+CGG + chr2_3:61301537-61301556 Msa0303990:five_prime_UTR 30.0%
AAATTCCGTTAGGTTTAGTT+TGG - chr2_3:61301545-61301564 None:intergenic 30.0%
AAACTAAACCTAACGGAATT+TGG + chr2_3:61301544-61301563 Msa0303990:five_prime_UTR 30.0%
GTAATAAAACTAACGGTGTT+CGG - chr2_3:61301584-61301603 None:intergenic 30.0%
CTTGGAATTCATTCATTGAT+CGG + chr2_3:61301672-61301691 Msa0303990:five_prime_UTR 30.0%
ATTTCTTTCCATAAGCTAAG+GGG - chr2_3:61301939-61301958 None:intergenic 30.0%
ATTATACGACATGACTTTAG+TGG + chr2_3:61302317-61302336 Msa0303990:intron 30.0%
ATAGAAATAGCCTATAGAAG+CGG - chr2_3:61302491-61302510 None:intergenic 30.0%
AATAAGTTAAAAGGCTATCC+TGG + chr2_3:61302591-61302610 Msa0303990:intron 30.0%
CAAAATTCTCATTCGATCTA+AGG - chr2_3:61302718-61302737 None:intergenic 30.0%
! CTTAGATCGAATGAGAATTT+TGG + chr2_3:61302716-61302735 Msa0303990:intron 30.0%
! TTTTGCAGAAAGCTTGATAA+CGG + chr2_3:61302799-61302818 Msa0303990:intron 30.0%
! CACAGAAATTGAATGCTTTT+CGG - chr2_3:61303017-61303036 None:intergenic 30.0%
AAACCTGAACATAGAGATAA+GGG - chr2_3:61303188-61303207 None:intergenic 30.0%
TACATAGCAGTAGAATTGAT+TGG + chr2_3:61303254-61303273 Msa0303990:intron 30.0%
!! TTGATTGGTTTGTTGTCAAA+TGG + chr2_3:61303269-61303288 Msa0303990:intron 30.0%
TGACTTCATAGAAATTGGAT+CGG + chr2_3:61303294-61303313 Msa0303990:intron 30.0%
TATTTCCACTGTAAATTGTG+GGG - chr2_3:61303428-61303447 None:intergenic 30.0%
GAACTAGATTTGCAAAAATG+AGG - chr2_3:61303502-61303521 None:intergenic 30.0%
! AAAGAAAACCAAAAGCACAT+AGG - chr2_3:61303549-61303568 None:intergenic 30.0%
AACAATATTGCTTATCCAAC+TGG + chr2_3:61303700-61303719 Msa0303990:intron 30.0%
AAAAATCATATGAAAGGGAG+AGG + chr2_3:61303731-61303750 Msa0303990:intron 30.0%
AAAATCATATGAAAGGGAGA+GGG + chr2_3:61303732-61303751 Msa0303990:intron 30.0%
GAAAAATAGTATTGCCTATC+AGG + chr2_3:61303829-61303848 Msa0303990:intron 30.0%
TTCACATTGTCAACATCATA+TGG + chr2_3:61303876-61303895 Msa0303990:intron 30.0%
!! ACTCATCTTCTTTTGAAGAA+GGG - chr2_3:61304072-61304091 None:intergenic 30.0%
!! AACTCATCTTCTTTTGAAGA+AGG - chr2_3:61304073-61304092 None:intergenic 30.0%
! ATGTTATTGTCTTTTGATGG+AGG - chr2_3:61304263-61304282 None:intergenic 30.0%
AAGACTCAATCTTATGTTTC+TGG - chr2_3:61304295-61304314 None:intergenic 30.0%
TAATTGTCAAGCTGTTAAGA+GGG - chr2_3:61304566-61304585 None:intergenic 30.0%
ATCTATTGAAATGCCTTCAA+TGG - chr2_3:61304802-61304821 None:intergenic 30.0%
TGGTTTATGATCGAACATTA+TGG - chr2_3:61304984-61305003 None:intergenic 30.0%
GTTCGATCATAAACCATATT+TGG + chr2_3:61304988-61305007 Msa0303990:intron 30.0%
AACAACTAGGAAAGATTTAG+AGG - chr2_3:61305028-61305047 None:intergenic 30.0%
AAACAAATTTCTTGAGGTAG+AGG - chr2_3:61305075-61305094 None:intergenic 30.0%
TGTGTTTATAACAGACAGTT+AGG + chr2_3:61305141-61305160 Msa0303990:intron 30.0%
TTAACTAGAATTCTTGGTTC+AGG - chr2_3:61305660-61305679 None:intergenic 30.0%
!! CTTTTTCATTTTTACAGACC+TGG + chr2_3:61305875-61305894 Msa0303990:intron 30.0%
!! TTTTCATTTTTACAGACCTG+GGG + chr2_3:61305877-61305896 Msa0303990:intron 30.0%
!! ATATAGATTTTTCAATCCCC+AGG - chr2_3:61305896-61305915 None:intergenic 30.0%
TCCTGTCTCAATAAGATTAA+AGG + chr2_3:61306122-61306141 Msa0303990:three_prime_UTR 30.0%
CCTGTCTCAATAAGATTAAA+GGG + chr2_3:61306123-61306142 Msa0303990:three_prime_UTR 30.0%
! TGAGTGTTGTATTGATAAGT+TGG - chr2_3:61306173-61306192 None:intergenic 30.0%
TCAACAAACAATTAGCAAGT+AGG - chr2_3:61306202-61306221 None:intergenic 30.0%
! CATTTTGTCTGAGTTTGAAA+AGG - chr2_3:61306368-61306387 None:intergenic 30.0%
GCTATCAAACAAATTGCATA+GGG - chr2_3:61306525-61306544 None:intergenic 30.0%
AGCTATCAAACAAATTGCAT+AGG - chr2_3:61306526-61306545 None:intergenic 30.0%
AAACATGTGTTTAATCTTGC+AGG + chr2_3:61306556-61306575 Msa0303990:intron 30.0%
ATTTCATATATGGATACGAC+TGG - chr2_3:61306666-61306685 None:intergenic 30.0%
ATTGATGCATATGTTAAAGC+TGG + chr2_3:61306828-61306847 Msa0303990:three_prime_UTR 30.0%
GTAATTCATGGTCAAAACAT+GGG - chr2_3:61307078-61307097 None:intergenic 30.0%
TGTAATTCATGGTCAAAACA+TGG - chr2_3:61307079-61307098 None:intergenic 30.0%
TGCATAAGTAACATTGATAC+TGG - chr2_3:61307124-61307143 None:intergenic 30.0%
!! ATGCATTATTTCTAGCAGAA+TGG + chr2_3:61307139-61307158 Msa0303990:intron 30.0%
!! ACAGTCTTATTATGAAGGTA+AGG - chr2_3:61307283-61307302 None:intergenic 30.0%
TTATACTTTGCTTGTAGGTT+TGG + chr2_3:61307318-61307337 Msa0303990:intron 30.0%
TAGAGTGATTGATATCTTTG+AGG + chr2_3:61307733-61307752 Msa0303990:three_prime_UTR 30.0%
! TTGATATCTTTGAGGAATCA+TGG + chr2_3:61307741-61307760 Msa0303990:three_prime_UTR 30.0%
! TGATATCTTTGAGGAATCAT+GGG + chr2_3:61307742-61307761 Msa0303990:three_prime_UTR 30.0%
TAGTGTAACCAGAATAAAAG+TGG + chr2_3:61307832-61307851 Msa0303990:three_prime_UTR 30.0%
AGTGTAACCAGAATAAAAGT+GGG + chr2_3:61307833-61307852 Msa0303990:three_prime_UTR 30.0%
AAATATGAACTCAGAATGAG+TGG + chr2_3:61308131-61308150 Msa0303990:three_prime_UTR 30.0%
! CAATCCATTTCTGTCTTTTT+CGG - chr2_3:61308292-61308311 None:intergenic 30.0%
CGATCAATGAATGAATTCCA+AGG - chr2_3:61301674-61301693 None:intergenic 35.0%
AAGGAACCTGAAACTGTATA+GGG - chr2_3:61301849-61301868 None:intergenic 35.0%
TTTCTTTCCATAAGCTAAGG+GGG - chr2_3:61301938-61301957 None:intergenic 35.0%
!! AGCTGTGATTTTATAATGGG+TGG + chr2_3:61302100-61302119 Msa0303990:CDS 35.0%
! ACTAATGCTAGTTCTTGTGA+AGG + chr2_3:61302199-61302218 Msa0303990:CDS 35.0%
ATCATGATAACCGCTTCTAT+AGG + chr2_3:61302478-61302497 Msa0303990:intron 35.0%
!! GTTGTTTTCATAAGCTATCC+TGG + chr2_3:61302556-61302575 Msa0303990:intron 35.0%
TCTGCAAAACACATCAATGT+AGG - chr2_3:61302788-61302807 None:intergenic 35.0%
! GATGTTGAAAACAAAGTGCT+AGG + chr2_3:61302974-61302993 Msa0303990:CDS 35.0%
! AGAAATTGAATGCTTTTCGG+TGG - chr2_3:61303014-61303033 None:intergenic 35.0%
! AAAGCATTCAATTTCTGTGC+AGG + chr2_3:61303018-61303037 Msa0303990:CDS 35.0%
! CAAATATTGGTTGACAGCTT+CGG - chr2_3:61303102-61303121 None:intergenic 35.0%
ACAAATCTTAACCAGTGTCA+CGG - chr2_3:61303153-61303172 None:intergenic 35.0%
GAAACCTGAACATAGAGATA+AGG - chr2_3:61303189-61303208 None:intergenic 35.0%
TGGCATGACTTCATAGAAAT+TGG + chr2_3:61303289-61303308 Msa0303990:intron 35.0%
ACTGTAAATTGTGGGGAAAA+TGG - chr2_3:61303421-61303440 None:intergenic 35.0%
! ATTTTCCCCACAATTTACAG+TGG + chr2_3:61303420-61303439 Msa0303990:intron 35.0%
!!! TGATATCACCTGTTGCTTTT+TGG + chr2_3:61303450-61303469 Msa0303990:intron 35.0%
AAAGCTTTCCAAAAAGCAAC+AGG - chr2_3:61303461-61303480 None:intergenic 35.0%
CACACAGAAAAAGATAGAAG+AGG + chr2_3:61304024-61304043 Msa0303990:CDS 35.0%
AGACCATATGTACAGTGTTT+AGG + chr2_3:61304397-61304416 Msa0303990:intron 35.0%
CTTAGGCACAAACATAATGA+AGG - chr2_3:61304487-61304506 None:intergenic 35.0%
TGACCAAATGTATAGTGCTT+AGG - chr2_3:61304504-61304523 None:intergenic 35.0%
AATTGTCAAGCTGTTAAGAG+GGG - chr2_3:61304565-61304584 None:intergenic 35.0%
CTAATTGTCAAGCTGTTAAG+AGG - chr2_3:61304567-61304586 None:intergenic 35.0%
CTCTTAACAGCTTGACAATT+AGG + chr2_3:61304565-61304584 Msa0303990:intron 35.0%
TGTCTACATCATTATGACTC+TGG + chr2_3:61304598-61304617 Msa0303990:intron 35.0%
GATTCAGGCTATAATTGATG+AGG + chr2_3:61304845-61304864 Msa0303990:CDS 35.0%
TTATGATCGAACATTATGGC+TGG - chr2_3:61304980-61304999 None:intergenic 35.0%
AGAAGTGGATCAATTGTCAA+AGG + chr2_3:61305334-61305353 Msa0303990:CDS 35.0%
GGATCAATTGTCAAAGGAAA+AGG + chr2_3:61305340-61305359 Msa0303990:CDS 35.0%
TCTCCATTGTGTTATCAACT+CGG + chr2_3:61305557-61305576 Msa0303990:intron 35.0%
GAGTATATCCTCAGAAGTTA+TGG + chr2_3:61306083-61306102 Msa0303990:three_prime_UTR 35.0%
CCCTTTAATCTTATTGAGAC+AGG - chr2_3:61306126-61306145 None:intergenic 35.0%
CTCAATAAGATTAAAGGGAC+TGG + chr2_3:61306128-61306147 Msa0303990:three_prime_UTR 35.0%
ATCCCAATGCTTATGTTAAC+TGG + chr2_3:61306431-61306450 Msa0303990:intron 35.0%
TCCCAATGCTTATGTTAACT+GGG + chr2_3:61306432-61306451 Msa0303990:intron 35.0%
TTCCAATATGTATGTTGGAC+AGG + chr2_3:61306470-61306489 Msa0303990:intron 35.0%
TTCCTGTCCAACATACATAT+TGG - chr2_3:61306475-61306494 None:intergenic 35.0%
TATGCTCCTGTAGAAGAAAT+TGG + chr2_3:61306617-61306636 Msa0303990:three_prime_UTR 35.0%
TTGGAGAATGATGCTAAACA+AGG + chr2_3:61306858-61306877 Msa0303990:three_prime_UTR 35.0%
GAAGGTTATCATCTTCTTTG+AGG + chr2_3:61307244-61307263 Msa0303990:intron 35.0%
AAGCAAAGTATAACAGCATG+GGG - chr2_3:61307311-61307330 None:intergenic 35.0%
CAAGCAAAGTATAACAGCAT+GGG - chr2_3:61307312-61307331 None:intergenic 35.0%
ACAAGCAAAGTATAACAGCA+TGG - chr2_3:61307313-61307332 None:intergenic 35.0%
TGCTGTTATACTTTGCTTGT+AGG + chr2_3:61307313-61307332 Msa0303990:intron 35.0%
CGAAACATATTCAAGCAGTA+TGG + chr2_3:61307591-61307610 Msa0303990:three_prime_UTR 35.0%
!! CCTGCATATTTTCAGGAAAA+GGG - chr2_3:61307713-61307732 None:intergenic 35.0%
!! ACCTGCATATTTTCAGGAAA+AGG - chr2_3:61307714-61307733 None:intergenic 35.0%
!! ACTAGTACCCACTTTTATTC+TGG - chr2_3:61307843-61307862 None:intergenic 35.0%
ACAGTTGACACAGTTTCTTA+TGG + chr2_3:61307908-61307927 Msa0303990:three_prime_UTR 35.0%
! TGATAACTTATTGATGGACC+TGG + chr2_3:61308005-61308024 Msa0303990:three_prime_UTR 35.0%
!! CAATAACTGAGATTTGGTGA+CGG - chr2_3:61308039-61308058 None:intergenic 35.0%
AGAGTGCAATAACTGAGATT+TGG - chr2_3:61308045-61308064 None:intergenic 35.0%
TCTACTTATCGTTCTGACAT+TGG + chr2_3:61308062-61308081 Msa0303990:three_prime_UTR 35.0%
GATGTCATCCAAATTCCGTT+AGG - chr2_3:61301555-61301574 None:intergenic 40.0%
TATTACCTCATTGTTGGACG+TGG + chr2_3:61301598-61301617 Msa0303990:five_prime_UTR 40.0%
ATTACCTCATTGTTGGACGT+GGG + chr2_3:61301599-61301618 Msa0303990:five_prime_UTR 40.0%
!! TGAAGTTACGAAAGTGTCCT+TGG + chr2_3:61301654-61301673 Msa0303990:five_prime_UTR 40.0%
TTCATTCATTGATCGGAGTG+AGG + chr2_3:61301679-61301698 Msa0303990:five_prime_UTR 40.0%
TCATTCATTGATCGGAGTGA+GGG + chr2_3:61301680-61301699 Msa0303990:five_prime_UTR 40.0%
TGGTGGTAAATCTGAGAAGT+CGG - chr2_3:61301825-61301844 None:intergenic 40.0%
AACCTGAAACTGTATAGGGT+TGG - chr2_3:61301845-61301864 None:intergenic 40.0%
GAAGGAACCTGAAACTGTAT+AGG - chr2_3:61301850-61301869 None:intergenic 40.0%
CAGGGACAGAGAACTTATTA+TGG + chr2_3:61302073-61302092 Msa0303990:intron 40.0%
GAACTAGCATTAGTCGAAAC+AGG - chr2_3:61302193-61302212 None:intergenic 40.0%
TATTGACACTGCCCATAAGT+TGG - chr2_3:61302239-61302258 None:intergenic 40.0%
ATGCTCAAGCCAATCTAAAC+AGG + chr2_3:61302691-61302710 Msa0303990:intron 40.0%
ATCTAAGGGCCTGTTTAGAT+TGG - chr2_3:61302703-61302722 None:intergenic 40.0%
GCAAAACACATCAATGTAGG+AGG - chr2_3:61302785-61302804 None:intergenic 40.0%
TGGAGATAGAGTTCAAGAAG+TGG + chr2_3:61302844-61302863 Msa0303990:CDS 40.0%
GGAGATAGAGTTCAAGAAGT+GGG + chr2_3:61302845-61302864 Msa0303990:CDS 40.0%
ATGCTCATTAGAGATAGTGC+CGG - chr2_3:61302882-61302901 None:intergenic 40.0%
TTTCAACATCACCCTGCAAT+TGG - chr2_3:61302964-61302983 None:intergenic 40.0%
TCTTGCATGATAACACTACG+CGG + chr2_3:61303333-61303352 Msa0303990:intron 40.0%
GCAAAAATGAGGCAGATAGA+TGG - chr2_3:61303491-61303510 None:intergenic 40.0%
!! TCATTCTGTGTTTGTTGTGC+AGG + chr2_3:61303606-61303625 Msa0303990:intron 40.0%
AAAGATAGAAGAGGAGACGA+AGG + chr2_3:61304033-61304052 Msa0303990:CDS 40.0%
TTGAAACAGAGCCATAGTAG+GGG - chr2_3:61304167-61304186 None:intergenic 40.0%
GTTGAAACAGAGCCATAGTA+GGG - chr2_3:61304168-61304187 None:intergenic 40.0%
AGTTGAAACAGAGCCATAGT+AGG - chr2_3:61304169-61304188 None:intergenic 40.0%
!! TCCATTGAGCTAGTCTTCTA+TGG + chr2_3:61304343-61304362 Msa0303990:intron 40.0%
! ACCATAGAAGACTAGCTCAA+TGG - chr2_3:61304347-61304366 None:intergenic 40.0%
GTGCCTAAACACTGTACATA+TGG - chr2_3:61304403-61304422 None:intergenic 40.0%
GTGCCTAAGCACTATACATT+TGG + chr2_3:61304498-61304517 Msa0303990:intron 40.0%
CATTATGACTCTGGTAAGAG+TGG + chr2_3:61304607-61304626 Msa0303990:intron 40.0%
! TTGTCTTTTGCAGCCATTGA+AGG + chr2_3:61304786-61304805 Msa0303990:intron 40.0%
TTCAGCTTCAGAGAAGATTC+AGG + chr2_3:61304830-61304849 Msa0303990:CDS 40.0%
GTTTAGAAACTAACTCGGGA+TGG - chr2_3:61305214-61305233 None:intergenic 40.0%
ATTAGTATCCTCAGCCTCAT+TGG - chr2_3:61305306-61305325 None:intergenic 40.0%
TTAGGTGCATAACTGACTAG+TGG - chr2_3:61305434-61305453 None:intergenic 40.0%
! TTATGCACCTAAAGCATCCA+AGG + chr2_3:61305442-61305461 Msa0303990:CDS 40.0%
ACTGTGAGGTGAAATGTCTT+GGG - chr2_3:61305927-61305946 None:intergenic 40.0%
TACTGTGAGGTGAAATGTCT+TGG - chr2_3:61305928-61305947 None:intergenic 40.0%
! TTCTGAGGATATACTCTGCA+CGG - chr2_3:61306079-61306098 None:intergenic 40.0%
CAATGCTTCCATAACTTCTG+AGG - chr2_3:61306094-61306113 None:intergenic 40.0%
! CTCAGAAGTTATGGAAGCAT+TGG + chr2_3:61306092-61306111 Msa0303990:three_prime_UTR 40.0%
CCCCAGTTAACATAAGCATT+GGG - chr2_3:61306436-61306455 None:intergenic 40.0%
CCCAATGCTTATGTTAACTG+GGG + chr2_3:61306433-61306452 Msa0303990:intron 40.0%
ACCCCAGTTAACATAAGCAT+TGG - chr2_3:61306437-61306456 None:intergenic 40.0%
ATCTTGCAGGAATGCATGAA+AGG + chr2_3:61306569-61306588 Msa0303990:intron 40.0%
! TTTCTTCTACAGGAGCATAC+AGG - chr2_3:61306616-61306635 None:intergenic 40.0%
TCACTGCCAATTTCTTCTAC+AGG - chr2_3:61306626-61306645 None:intergenic 40.0%
TGTAGAAGAAATTGGCAGTG+AGG + chr2_3:61306625-61306644 Msa0303990:three_prime_UTR 40.0%
GTAGAAGAAATTGGCAGTGA+GGG + chr2_3:61306626-61306645 Msa0303990:three_prime_UTR 40.0%
TAGAAGAAATTGGCAGTGAG+GGG + chr2_3:61306627-61306646 Msa0303990:three_prime_UTR 40.0%
TGTTAAAGCTGGACTTGTCT+TGG + chr2_3:61306839-61306858 Msa0303990:three_prime_UTR 40.0%
TGATGCTAAACAAGGACTGA+AGG + chr2_3:61306866-61306885 Msa0303990:three_prime_UTR 40.0%
GAAGGTAAGGTTTCCTATCA+GGG - chr2_3:61307270-61307289 None:intergenic 40.0%
TGAAGGTAAGGTTTCCTATC+AGG - chr2_3:61307271-61307290 None:intergenic 40.0%
ATGCCTTGCATTCATCAAAG+TGG - chr2_3:61307389-61307408 None:intergenic 40.0%
CTTTGATGAATGCAAGGCAT+AGG + chr2_3:61307389-61307408 Msa0303990:three_prime_UTR 40.0%
TGAATGCAAGGCATAGGAAA+AGG + chr2_3:61307395-61307414 Msa0303990:three_prime_UTR 40.0%
ATGTTCAGCAGCAAAAGCTA+AGG - chr2_3:61307463-61307482 None:intergenic 40.0%
AAATAGCTGATATAAGCCGC+TGG + chr2_3:61307524-61307543 Msa0303990:intron 40.0%
ATTCAAGCAGTATGGATCAG+AGG + chr2_3:61307599-61307618 Msa0303990:three_prime_UTR 40.0%
! CCCTTTTCCTGAAAATATGC+AGG + chr2_3:61307710-61307729 Msa0303990:three_prime_UTR 40.0%
! CACTCTACCTGCATATTTTC+AGG - chr2_3:61307720-61307739 None:intergenic 40.0%
! AAGCATTTACATTGGCTGCA+AGG - chr2_3:61307795-61307814 None:intergenic 40.0%
! GTGTCGACAAGCATTTACAT+TGG - chr2_3:61307803-61307822 None:intergenic 40.0%
TCTGGTTACACTACCTAAGT+TGG - chr2_3:61307825-61307844 None:intergenic 40.0%
AAGTGGGTACTAGTATTGCA+TGG + chr2_3:61307849-61307868 Msa0303990:three_prime_UTR 40.0%
AGTGGGTACTAGTATTGCAT+GGG + chr2_3:61307850-61307869 Msa0303990:three_prime_UTR 40.0%
! TGACATTCACACTGTCGATT+AGG - chr2_3:61307944-61307963 None:intergenic 40.0%
CATATGGTGCAATATCAGTG+AGG - chr2_3:61307984-61308003 None:intergenic 40.0%
GTAGCCGAAAAAGACAGAAA+TGG + chr2_3:61308285-61308304 Msa0303990:three_prime_UTR 40.0%
TAGGTTGCAGGTCTTTGTTG+AGG + chr2_3:61301708-61301727 Msa0303990:CDS 45.0%
CTGAAACTGTATAGGGTTGG+TGG - chr2_3:61301842-61301861 None:intergenic 45.0%
CACCAACCCTATACAGTTTC+AGG + chr2_3:61301840-61301859 Msa0303990:CDS 45.0%
GCTAAGGGGGTTATGGTATA+AGG - chr2_3:61301925-61301944 None:intergenic 45.0%
ACCATAACCCCCTTAGCTTA+TGG + chr2_3:61301928-61301947 Msa0303990:intron 45.0%
TCCATAAGCTAAGGGGGTTA+TGG - chr2_3:61301932-61301951 None:intergenic 45.0%
GGCTTGAGCATAAGCTGTTT+AGG - chr2_3:61302682-61302701 None:intergenic 45.0%
GCGACAGTTGAGTCAAAAGA+TGG + chr2_3:61302824-61302843 Msa0303990:CDS 45.0%
GGTCCCTTATCTCTATGTTC+AGG + chr2_3:61303182-61303201 Msa0303990:intron 45.0%
!! TCTGTGTTTGTTGTGCAGGT+TGG + chr2_3:61303610-61303629 Msa0303990:intron 45.0%
GACTCTGGTAAGAGTGGATA+AGG + chr2_3:61304613-61304632 Msa0303990:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr2_3:61304930-61304949 Msa0303990:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr2_3:61304931-61304950 Msa0303990:intron 45.0%
ACACTTCGTATCCCTTCCAT+TGG + chr2_3:61305184-61305203 Msa0303990:CDS 45.0%
AGAAACTAACTCGGGATGGA+TGG - chr2_3:61305210-61305229 None:intergenic 45.0%
GTTCCCATACCAGATGAAGT+GGG - chr2_3:61305470-61305489 None:intergenic 45.0%
TGTTCCCATACCAGATGAAG+TGG - chr2_3:61305471-61305490 None:intergenic 45.0%
!! CTGCCGAGTTGATAACACAA+TGG - chr2_3:61305563-61305582 None:intergenic 45.0%
! GCTTAAGCATGAGTACTGTG+AGG - chr2_3:61305941-61305960 None:intergenic 45.0%
CAGTACTCATGCTTAAGCTG+TGG + chr2_3:61305943-61305962 Msa0303990:CDS 45.0%
CCTCGGTAGCTGTCTTAATT+CGG - chr2_3:61305977-61305996 None:intergenic 45.0%
AAAACTTGCCTGCAAGACCT+CGG - chr2_3:61305994-61306013 None:intergenic 45.0%
GGAATGCATGAAAGGTTCGT+TGG + chr2_3:61306577-61306596 Msa0303990:intron 45.0%
TATGGATCTGTCATCGTACC+TGG + chr2_3:61306747-61306766 Msa0303990:intron 45.0%
!! ATCTTCTTTGAGGCCCTGAT+AGG + chr2_3:61307254-61307273 Msa0303990:intron 45.0%
! ACGCCACTTTGATGAATGCA+AGG + chr2_3:61307383-61307402 Msa0303990:three_prime_UTR 45.0%
ATGCTTGTCGACACCAACTT+AGG + chr2_3:61307809-61307828 Msa0303990:three_prime_UTR 45.0%
!!! ATAAAATTAATTTAACTTTT+TGG + chr2_3:61304452-61304471 Msa0303990:intron 5.0%
!!! TAAAATTAATTTAACTTTTT+GGG + chr2_3:61304453-61304472 Msa0303990:intron 5.0%
!! TTATAAATTACAAATAATTA+TGG + chr2_3:61306729-61306748 Msa0303990:intron 5.0%
TACTCCCACGTCCAACAATG+AGG - chr2_3:61301606-61301625 None:intergenic 50.0%
TCATTGTTGGACGTGGGAGT+AGG + chr2_3:61301605-61301624 Msa0303990:five_prime_UTR 50.0%
GATCGGAGTGAGGGAATGAT+AGG + chr2_3:61301689-61301708 Msa0303990:exon 50.0%
GTGAGGGAATGATAGGTTGC+AGG + chr2_3:61301696-61301715 Msa0303990:exon 50.0%
CAGGTCTTTGTTGAGGTTCG+TGG + chr2_3:61301715-61301734 Msa0303990:intron 50.0%
CCAAACACGCCCTAAGAACA+TGG - chr2_3:61302418-61302437 None:intergenic 50.0%
CCATGTTCTTAGGGCGTGTT+TGG + chr2_3:61302415-61302434 Msa0303990:intron 50.0%
!! GAAGTGGGTTGTAGCACATC+CGG + chr2_3:61302860-61302879 Msa0303990:CDS 50.0%
GAAAGTAGCTGCCGAAGCTT+TGG + chr2_3:61302907-61302926 Msa0303990:CDS 50.0%
TGCTAGTTCCAGCCAATTGC+AGG + chr2_3:61302949-61302968 Msa0303990:CDS 50.0%
GCTAGTTCCAGCCAATTGCA+GGG + chr2_3:61302950-61302969 Msa0303990:CDS 50.0%
AACATCACCCTGCAATTGGC+TGG - chr2_3:61302960-61302979 None:intergenic 50.0%
! AAGGGAGAGGGAGTATGACA+TGG + chr2_3:61303744-61303763 Msa0303990:intron 50.0%
! AGGGAGAGGGAGTATGACAT+GGG + chr2_3:61303745-61303764 Msa0303990:intron 50.0%
GACACGTACGAGATAGACAG+TGG - chr2_3:61304124-61304143 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr2_3:61304932-61304951 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr2_3:61304929-61304948 Msa0303990:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr2_3:61304935-61304954 Msa0303990:intron 50.0%
!! TCTTGACACCGACTCCAATG+AGG + chr2_3:61305289-61305308 Msa0303990:CDS 50.0%
ATCCTCAGCCTCATTGGAGT+CGG - chr2_3:61305300-61305319 None:intergenic 50.0%
GCTCCCACTTCATCTGGTAT+GGG + chr2_3:61305464-61305483 Msa0303990:CDS 50.0%
CCGAATTAAGACAGCTACCG+AGG + chr2_3:61305974-61305993 Msa0303990:CDS 50.0%
! TACAGGAGCATACAGGACAC+GGG - chr2_3:61306609-61306628 None:intergenic 50.0%
! CTACAGGAGCATACAGGACA+CGG - chr2_3:61306610-61306629 None:intergenic 50.0%
GATATAAGCCGCTGGTGTTC+AGG + chr2_3:61307532-61307551 Msa0303990:intron 50.0%
CGATTTGTCCTGAACACCAG+CGG - chr2_3:61307543-61307562 None:intergenic 50.0%
CGCTGGTGTTCAGGACAAAT+CGG + chr2_3:61307541-61307560 Msa0303990:intron 50.0%
AGCAGTATGGATCAGAGGAC+TGG + chr2_3:61307604-61307623 Msa0303990:three_prime_UTR 50.0%
GCAGTATGGATCAGAGGACT+GGG + chr2_3:61307605-61307624 Msa0303990:three_prime_UTR 50.0%
CAGTATGGATCAGAGGACTG+GGG + chr2_3:61307606-61307625 Msa0303990:three_prime_UTR 50.0%
AGTATGGATCAGAGGACTGG+GGG + chr2_3:61307607-61307626 Msa0303990:three_prime_UTR 50.0%
!! TTGGTGACGGCAAAGAATCC+AGG - chr2_3:61308026-61308045 None:intergenic 50.0%
! GTGTTGGTGAACCGTGACAC+TGG + chr2_3:61303139-61303158 Msa0303990:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr2_3:61304937-61304956 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr2_3:61304943-61304962 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr2_3:61304944-61304963 None:intergenic 55.0%
GGGATGGATGGCCAATGGAA+GGG - chr2_3:61305198-61305217 None:intergenic 55.0%
AACTCGGGATGGATGGCCAA+TGG - chr2_3:61305203-61305222 None:intergenic 55.0%
GTGGGAGCCTTGGATGCTTT+AGG - chr2_3:61305452-61305471 None:intergenic 55.0%
TCCAAGGCTCCCACTTCATC+TGG + chr2_3:61305458-61305477 Msa0303990:CDS 55.0%
ACCAGATGAAGTGGGAGCCT+TGG - chr2_3:61305462-61305481 None:intergenic 55.0%
GGCTCCCACTTCATCTGGTA+TGG + chr2_3:61305463-61305482 Msa0303990:CDS 55.0%
AGCATACAGGACACGGGCTT+TGG - chr2_3:61306603-61306622 None:intergenic 55.0%
GTATGGATCAGAGGACTGGG+GGG + chr2_3:61307608-61307627 Msa0303990:three_prime_UTR 55.0%
CGGGATGGATGGCCAATGGA+AGG - chr2_3:61305199-61305218 None:intergenic 60.0%
!! CACCGACTCCAATGAGGCTG+AGG + chr2_3:61305295-61305314 Msa0303990:CDS 60.0%
GACAGCTACCGAGGTCTTGC+AGG + chr2_3:61305983-61306002 Msa0303990:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 61301533 61308351 61301533 ID=Msa0303990;Name=Msa0303990
chr2_3 mRNA 61301533 61308351 61301533 ID=Msa0303990-mRNA-1;Parent=Msa0303990;Name=Msa0303990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=171|0.83|0.84|1|0.75|0.69|13|1115|388
chr2_3 exon 61301533 61301729 61301533 ID=Msa0303990-mRNA-1:exon:20247;Parent=Msa0303990-mRNA-1
chr2_3 exon 61301816 61301861 61301816 ID=Msa0303990-mRNA-1:exon:20248;Parent=Msa0303990-mRNA-1
chr2_3 exon 61302076 61302220 61302076 ID=Msa0303990-mRNA-1:exon:20249;Parent=Msa0303990-mRNA-1
chr2_3 exon 61302807 61303081 61302807 ID=Msa0303990-mRNA-1:exon:20250;Parent=Msa0303990-mRNA-1
chr2_3 exon 61303628 61303665 61303628 ID=Msa0303990-mRNA-1:exon:20251;Parent=Msa0303990-mRNA-1
chr2_3 exon 61304018 61304097 61304018 ID=Msa0303990-mRNA-1:exon:20252;Parent=Msa0303990-mRNA-1
chr2_3 exon 61304799 61304866 61304799 ID=Msa0303990-mRNA-1:exon:20253;Parent=Msa0303990-mRNA-1
chr2_3 exon 61305155 61305505 61305155 ID=Msa0303990-mRNA-1:exon:20254;Parent=Msa0303990-mRNA-1
chr2_3 exon 61305892 61306149 61305892 ID=Msa0303990-mRNA-1:exon:20255;Parent=Msa0303990-mRNA-1
chr2_3 exon 61306578 61306668 61306578 ID=Msa0303990-mRNA-1:exon:20256;Parent=Msa0303990-mRNA-1
chr2_3 exon 61306820 61306887 61306820 ID=Msa0303990-mRNA-1:exon:20257;Parent=Msa0303990-mRNA-1
chr2_3 exon 61307379 61307416 61307379 ID=Msa0303990-mRNA-1:exon:20258;Parent=Msa0303990-mRNA-1
chr2_3 exon 61307554 61308351 61307554 ID=Msa0303990-mRNA-1:exon:20259;Parent=Msa0303990-mRNA-1
chr2_3 five_prime_UTR 61301533 61301703 61301533 ID=Msa0303990-mRNA-1:five_prime_utr;Parent=Msa0303990-mRNA-1
chr2_3 CDS 61301704 61301729 61301704 ID=Msa0303990-mRNA-1:cds;Parent=Msa0303990-mRNA-1
chr2_3 CDS 61301816 61301861 61301816 ID=Msa0303990-mRNA-1:cds;Parent=Msa0303990-mRNA-1
chr2_3 CDS 61302076 61302220 61302076 ID=Msa0303990-mRNA-1:cds;Parent=Msa0303990-mRNA-1
chr2_3 CDS 61302807 61303081 61302807 ID=Msa0303990-mRNA-1:cds;Parent=Msa0303990-mRNA-1
chr2_3 CDS 61303628 61303665 61303628 ID=Msa0303990-mRNA-1:cds;Parent=Msa0303990-mRNA-1
chr2_3 CDS 61304018 61304097 61304018 ID=Msa0303990-mRNA-1:cds;Parent=Msa0303990-mRNA-1
chr2_3 CDS 61304799 61304866 61304799 ID=Msa0303990-mRNA-1:cds;Parent=Msa0303990-mRNA-1
chr2_3 CDS 61305155 61305505 61305155 ID=Msa0303990-mRNA-1:cds;Parent=Msa0303990-mRNA-1
chr2_3 CDS 61305892 61306029 61305892 ID=Msa0303990-mRNA-1:cds;Parent=Msa0303990-mRNA-1
chr2_3 three_prime_UTR 61306030 61306149 61306030 ID=Msa0303990-mRNA-1:three_prime_utr;Parent=Msa0303990-mRNA-1
chr2_3 three_prime_UTR 61306578 61306668 61306578 ID=Msa0303990-mRNA-1:three_prime_utr;Parent=Msa0303990-mRNA-1
chr2_3 three_prime_UTR 61306820 61306887 61306820 ID=Msa0303990-mRNA-1:three_prime_utr;Parent=Msa0303990-mRNA-1
chr2_3 three_prime_UTR 61307379 61307416 61307379 ID=Msa0303990-mRNA-1:three_prime_utr;Parent=Msa0303990-mRNA-1
chr2_3 three_prime_UTR 61307554 61308351 61307554 ID=Msa0303990-mRNA-1:three_prime_utr;Parent=Msa0303990-mRNA-1
Gene Sequence

>Msa0303990

ATGATAGGTTGCAGGTCTTTGTTGAGAGTCGACCGACTTCTCAGATTTACCACCAACCCTATACAGTTTCAGGGACAGAGAACTTATTATGGTTTAAGCTGTGATTTTATAATGGGTGGTAGAAAAAAGAGAGTTGTTATTGATGACCATAACAATAAGCAGAAAACAATGAATTCTATCTGGAGACCTGTTTCGACTAATGCTAGTTCTTGTGAAGAAAGCTTGATAACGGCTGCGACAGTTGAGTCAAAAGATGGAGATAGAGTTCAAGAAGTGGGTTGTAGCACATCCGGCACTATCTCTAATGAGCATGACATGAAAGTAGCTGCCGAAGCTTTGGATGAAAATATAAAATCAGCTGCTAGTTCCAGCCAATTGCAGGGTGATGTTGAAAACAAAGTGCTAGGAGATTCATCTCTCTCCACCGAAAAGCATTCAATTTCTGTGCAGGCAATTATATATTATTTTTACTTTTATTTTTATCTTTACGAAGTTGGTGCTTCTCTATTTCGTTTTATCAAAGGAAAAGGGGGATTCACACAGAAAAAGATAGAAGAGGAGACGAAGGTTAAGATAATATTCCCTTCTTCAAAAGAAGATGAGTTTATCACCATTGAAGGCATTTCAATAGATAGCGTGACTTCAGCTTCAGAGAAGATTCAGGCTATAATTGATGAGACAGTTAGGAGTCGAAGTCTTGATTATTCACACTTCGTATCCCTTCCATTGGCCATCCATCCCGAGTTAGTTTCTAAACTAATCAATTTTCAACACACTATTTTGGGAAATGACGATTCTAGCATAGATGAGAATCTTGACACCGACTCCAATGAGGCTGAGGATACTAATGATAAAAAAGAAGTGGATCAATTGTCAAAGGAAAAGGCTGATGTTGCAGTTGAACTTAAAGTTGATGATGACCGTAAATCAGTTAAAGTTAATCGTACTAGCATACCACTAGTCAGTTATGCACCTAAAGCATCCAAGGCTCCCACTTCATCTGGTATGGGAACAATCTGTTTTTTCTATACCTGGGGATTGAAAAATCTATATTCATCAAGCCCAAGACATTTCACCTCACAGTACTCATGCTTAAGCTGTGGAACAAAGACCGAATTAAGACAGCTACCGAGGTCTTGCAGGCAAGTTTTATTAAACACAACATAA
Protein sequence

>Msa0303990

MIGCRSLLRVDRLLRFTTNPIQFQGQRTYYGLSCDFIMGGRKKRVVIDDHNNKQKTMNSIWRPVSTNASSCEESLITAATVESKDGDRVQEVGCSTSGTISNEHDMKVAAEALDENIKSAASSSQLQGDVENKVLGDSSLSTEKHSISVQAIIYYFYFYFYLYEVGASLFRFIKGKGGFTQKKIEEETKVKIIFPSSKEDEFITIEGISIDSVTSASEKIQAIIDETVRSRSLDYSHFVSLPLAIHPELVSKLINFQHTILGNDDSSIDENLDTDSNEAEDTNDKKEVDQLSKEKADVAVELKVDDDRKSVKVNRTSIPLVSYAPKASKAPTSSGMGTICFFYTWGLKNLYSSSPRHFTSQYSCLSCGTKTELRQLPRSCRQVLLNTT*