Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138530 | XP_013447616.1 | 94.096 | 271 | 10 | 2 | 4 | 274 | 1 | 265 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138530 | sp|O94336|YHM3_SCHPO | 27.941 | 204 | 131 | 7 | 48 | 245 | 18 | 211 | 1.33e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138530 | A0A072TW64 | 94.096 | 271 | 10 | 2 | 4 | 274 | 1 | 265 | 0.0 | 521 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007470 | Msa1138530 | 0.804159 | 2.469290e-49 | -8.615850e-47 |
| Msa0049910 | Msa1138530 | 0.810699 | 1.012499e-50 | -8.615850e-47 |
| Msa0056060 | Msa1138530 | 0.806298 | 8.802951e-50 | -8.615850e-47 |
| Msa0097320 | Msa1138530 | 0.800701 | 1.273817e-48 | -8.615850e-47 |
| Msa0742150 | Msa1138530 | 0.806837 | 6.776441e-50 | -8.615850e-47 |
| Msa0176030 | Msa1138530 | 0.800301 | 1.537179e-48 | -8.615850e-47 |
| Msa0410580 | Msa1138530 | 0.811770 | 5.928382e-51 | -8.615850e-47 |
| Msa1009120 | Msa1138530 | 0.942886 | 3.239101e-102 | -8.615850e-47 |
| Msa1023300 | Msa1138530 | 0.804356 | 2.246362e-49 | -8.615850e-47 |
| Msa1023310 | Msa1138530 | 0.816985 | 4.169238e-52 | -8.615850e-47 |
| Msa1026410 | Msa1138530 | 0.829231 | 5.777494e-55 | -8.615850e-47 |
| Msa1050410 | Msa1138530 | 0.841041 | 6.042979e-58 | -8.615850e-47 |
| Msa1062030 | Msa1138530 | 0.800369 | 1.488865e-48 | -8.615850e-47 |
| Msa1065110 | Msa1138530 | 0.805272 | 1.446488e-49 | -8.615850e-47 |
| Msa1138530 | Msa1150800 | 0.802880 | 4.546877e-49 | -8.615850e-47 |
| Msa1138530 | Msa1150810 | 0.828088 | 1.092098e-54 | -8.615850e-47 |
| Msa1138530 | Msa1182430 | 0.816904 | 4.347917e-52 | -8.615850e-47 |
| Msa1138530 | Msa1236420 | 0.805646 | 1.207490e-49 | -8.615850e-47 |
| Msa1138530 | Msa1285260 | 0.802491 | 5.470875e-49 | -8.615850e-47 |
| Msa1138530 | Msa1347330 | 0.815322 | 9.810105e-52 | -8.615850e-47 |
| Msa1138530 | Msa1355890 | 0.810419 | 1.163738e-50 | -8.615850e-47 |
| Msa1138530 | Msa1378680 | 0.806057 | 9.893097e-50 | -8.615850e-47 |
| Msa1138530 | Msa1407470 | 0.824405 | 8.215989e-54 | -8.615850e-47 |
| Msa1138530 | Msa1458510 | 0.825865 | 3.712874e-54 | -8.615850e-47 |
| Msa0507610 | Msa1138530 | 0.814784 | 1.291348e-51 | -8.615850e-47 |
| Msa0507790 | Msa1138530 | 0.808871 | 2.503249e-50 | -8.615850e-47 |
| Msa0862280 | Msa1138530 | 0.808960 | 2.395662e-50 | -8.615850e-47 |
| Msa0876360 | Msa1138530 | 0.833122 | 6.393189e-56 | -8.615850e-47 |
| Msa0935770 | Msa1138530 | 0.810192 | 1.302297e-50 | -8.615850e-47 |
| Msa0978700 | Msa1138530 | 0.808860 | 2.516382e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138530 | MtrunA17_Chr7g0219531 | 94.096 | 271 | 10 | 2 | 4 | 274 | 1 | 265 | 0.0 | 521 |
| Msa1138530 | MtrunA17_Chr7g0219541 | 80.147 | 272 | 52 | 2 | 4 | 274 | 1 | 271 | 3.24e-160 | 446 |
| Msa1138530 | MtrunA17_Chr7g0219521 | 79.464 | 224 | 33 | 3 | 4 | 220 | 1 | 218 | 6.81e-125 | 354 |
| Msa1138530 | MtrunA17_Chr7g0219551 | 62.547 | 267 | 92 | 6 | 9 | 273 | 47 | 307 | 8.39e-118 | 340 |
| Msa1138530 | MtrunA17_Chr2g0308461 | 52.511 | 219 | 101 | 1 | 52 | 267 | 281 | 499 | 2.22e-80 | 251 |
| Msa1138530 | MtrunA17_Chr7g0265691 | 40.598 | 234 | 126 | 4 | 42 | 269 | 34 | 260 | 3.03e-57 | 184 |
| Msa1138530 | MtrunA17_Chr7g0265701 | 41.333 | 225 | 120 | 3 | 41 | 260 | 27 | 244 | 1.78e-55 | 179 |
| Msa1138530 | MtrunA17_Chr7g0265581 | 41.209 | 182 | 100 | 3 | 86 | 265 | 33 | 209 | 3.22e-48 | 159 |
| Msa1138530 | MtrunA17_Chr7g0219511 | 87.719 | 57 | 7 | 0 | 218 | 274 | 14 | 70 | 2.01e-31 | 111 |
| Msa1138530 | MtrunA17_Chr7g0255231 | 47.500 | 120 | 54 | 4 | 86 | 203 | 114 | 226 | 1.69e-28 | 108 |
| Msa1138530 | MtrunA17_Chr7g0265681 | 51.020 | 49 | 24 | 0 | 87 | 135 | 25 | 73 | 7.88e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138530 | AT3G29760.5 | 54.146 | 205 | 93 | 1 | 65 | 269 | 318 | 521 | 1.45e-82 | 258 |
| Msa1138530 | AT3G29760.3 | 54.146 | 205 | 93 | 1 | 65 | 269 | 318 | 521 | 1.45e-82 | 258 |
| Msa1138530 | AT3G29760.2 | 48.052 | 231 | 93 | 2 | 65 | 269 | 318 | 547 | 1.99e-76 | 242 |
| Msa1138530 | AT4G26190.2 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 1.45e-67 | 226 |
| Msa1138530 | AT4G26190.5 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 1.45e-67 | 226 |
| Msa1138530 | AT4G26190.3 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 1.45e-67 | 226 |
| Msa1138530 | AT4G26190.1 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 1.45e-67 | 226 |
| Msa1138530 | AT4G26190.4 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 1.45e-67 | 226 |
| Msa1138530 | AT3G29760.1 | 55.944 | 143 | 60 | 2 | 65 | 207 | 318 | 457 | 1.26e-53 | 181 |
| Msa1138530 | AT2G36540.1 | 36.979 | 192 | 102 | 4 | 72 | 263 | 72 | 244 | 3.41e-39 | 137 |
| Msa1138530 | AT2G36550.1 | 39.098 | 133 | 73 | 2 | 136 | 268 | 17 | 141 | 2.88e-28 | 105 |
| Msa1138530 | AT3G29760.4 | 50.704 | 71 | 34 | 1 | 65 | 135 | 318 | 387 | 2.83e-19 | 87.0 |
Find 41 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTGTTCTTGATTTAAA+TGG | 0.160699 | 7_4:+8058136 | Msa1138530:CDS |
| TTAAGGATCTAAGGAAAATT+TGG | 0.214094 | 7_4:+8059636 | Msa1138530:CDS |
| TCAACCTGAAAAGTGAAATA+TGG | 0.240280 | 7_4:+8060478 | Msa1138530:exon |
| TTCAGAAACTCGTGATAAAA+AGG | 0.276322 | 7_4:-8058643 | None:intergenic |
| TTGCATGCTCCTAATGAGTA+TGG | 0.283171 | 7_4:+8060568 | Msa1138530:three_prime_UTR |
| CCCCTCTCCCAAGGAAGATT+TGG | 0.307541 | 7_4:-8059671 | None:intergenic |
| TAAGGATCTAAGGAAAATTT+GGG | 0.340790 | 7_4:+8059637 | Msa1138530:CDS |
| TGGCGATTTACGACAATATC+TGG | 0.361316 | 7_4:+8060328 | Msa1138530:CDS |
| ACTGGCAACTGCTGAAAATA+TGG | 0.366395 | 7_4:+8060355 | Msa1138530:CDS |
| AATCAGAATGACAATTCATT+AGG | 0.409111 | 7_4:+8059914 | Msa1138530:CDS |
| TCACTGAAACAAGTGAATCT+TGG | 0.412951 | 7_4:+8060417 | Msa1138530:CDS |
| CACTGAAACAAGTGAATCTT+GGG | 0.414915 | 7_4:+8060418 | Msa1138530:CDS |
| TTCATGGCTATGAATGCATC+TGG | 0.415674 | 7_4:-8058202 | None:intergenic |
| AGAAACTCAAACACTTCTTC+AGG | 0.427777 | 7_4:+8057727 | Msa1138530:five_prime_UTR |
| AGTATGATCCAAATCTTCCT+TGG | 0.468731 | 7_4:+8059663 | Msa1138530:CDS |
| GTGATACGTTCTTGACCAAA+TGG | 0.469114 | 7_4:-8060398 | None:intergenic |
| GCATCTGGTTTAACATGCCT+TGG | 0.471433 | 7_4:-8058187 | None:intergenic |
| CAGTGTTATTGATTATTTGA+TGG | 0.474248 | 7_4:+8058818 | Msa1138530:CDS |
| TATGTAGAGCAACATCCATT+TGG | 0.482270 | 7_4:+8060383 | Msa1138530:CDS |
| TATAGATTAAATGAAGAAGA+TGG | 0.484181 | 7_4:+8057964 | Msa1138530:intron |
| CGAGAACAAGCGCAAGCCAC+TGG | 0.490249 | 7_4:+8059610 | Msa1138530:CDS |
| TCAATTGAAATATTATCAGT+TGG | 0.493002 | 7_4:+8058094 | Msa1138530:CDS |
| AGTGTTATTGATTATTTGAT+GGG | 0.517466 | 7_4:+8058819 | Msa1138530:CDS |
| GTATGATCCAAATCTTCCTT+GGG | 0.519547 | 7_4:+8059664 | Msa1138530:CDS |
| CTGCTTTGAGAGATTTGAAG+TGG | 0.522255 | 7_4:+8058669 | Msa1138530:CDS |
| GCTGGATGATTCTCCGTACA+AGG | 0.528813 | 7_4:+8059721 | Msa1138530:CDS |
| GGTTTAACATGCCTTGGATG+TGG | 0.529199 | 7_4:-8058181 | None:intergenic |
| TGAGTCAAACACATTGCTGC+TGG | 0.536574 | 7_4:+8059703 | Msa1138530:CDS |
| ATCCAAATCTTCCTTGGGAG+AGG | 0.538624 | 7_4:+8059669 | Msa1138530:CDS |
| GGATTAAGCAGCGCCTTGTA+CGG | 0.548018 | 7_4:-8059734 | None:intergenic |
| CCAAATCTTCCTTGGGAGAG+GGG | 0.550802 | 7_4:+8059671 | Msa1138530:CDS |
| TCCAAATCTTCCTTGGGAGA+GGG | 0.557235 | 7_4:+8059670 | Msa1138530:CDS |
| ACGACAATATCTGGATGGAC+TGG | 0.567504 | 7_4:+8060337 | Msa1138530:CDS |
| TTGTAATATCCCCTCTCCCA+AGG | 0.593037 | 7_4:-8059680 | None:intergenic |
| TTCTCATAACTGAATGTATG+CGG | 0.630484 | 7_4:-8059893 | None:intergenic |
| AAAGACTATTGATAACATTG+AGG | 0.642096 | 7_4:-8060448 | None:intergenic |
| TGCGGAAAGATTGAGTTGTA+CGG | 0.644719 | 7_4:-8059875 | None:intergenic |
| ATTAAACTGCTATCCAGATG+TGG | 0.650298 | 7_4:+8060766 | Msa1138530:three_prime_UTR |
| TGATGGGAGACATGAAACAA+AGG | 0.653332 | 7_4:+8058835 | Msa1138530:CDS |
| AGAGATTTGAAGTGGCTGTG+TGG | 0.661167 | 7_4:+8058677 | Msa1138530:CDS |
| GATTTACGACAATATCTGGA+TGG | 0.663493 | 7_4:+8060332 | Msa1138530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAGCATTTAATTTTGAT+AGG | + | chr7_4:8058298-8058317 | Msa1138530:intron | 15.0% |
| !!! | TTAATCTATTTTCTAATGAT+TGG | + | chr7_4:8058588-8058607 | Msa1138530:intron | 15.0% |
| !! | TATAGATTAAATGAAGAAGA+TGG | + | chr7_4:8057964-8057983 | Msa1138530:intron | 20.0% |
| !! | TCAATTGAAATATTATCAGT+TGG | + | chr7_4:8058094-8058113 | Msa1138530:CDS | 20.0% |
| !! | CTTATTGTTCTTGATTTAAA+TGG | + | chr7_4:8058136-8058155 | Msa1138530:CDS | 20.0% |
| !! | TTCAAATTCAAACATAAGAT+TGG | - | chr7_4:8058344-8058363 | None:intergenic | 20.0% |
| !!! | TATTTTCTAATGATTGGTTT+GGG | + | chr7_4:8058594-8058613 | Msa1138530:intron | 20.0% |
| !! | TTTGTAGACAATTAGTTATT+AGG | + | chr7_4:8058746-8058765 | Msa1138530:intron | 20.0% |
| !!! | CGTCTGTTTTATAATTTTTT+AGG | + | chr7_4:8058784-8058803 | Msa1138530:intron | 20.0% |
| !!! | AGTGTTATTGATTATTTGAT+GGG | + | chr7_4:8058819-8058838 | Msa1138530:CDS | 20.0% |
| !! | GGTATATGTTTAATTAAATC+TGG | + | chr7_4:8058973-8058992 | Msa1138530:intron | 20.0% |
| !!! | TGTAATCTTTTCATTGTATT+AGG | + | chr7_4:8059024-8059043 | Msa1138530:intron | 20.0% |
| !!! | GTAATCTTTTCATTGTATTA+GGG | + | chr7_4:8059025-8059044 | Msa1138530:intron | 20.0% |
| !! | CATATAAAACACTGTTTAAT+AGG | - | chr7_4:8060021-8060040 | None:intergenic | 20.0% |
| !!! | TATTTTTTAGCAATAAGTGA+AGG | + | chr7_4:8060073-8060092 | Msa1138530:intron | 20.0% |
| !! | TAAATGAAGAAGATGGTTTT+TGG | + | chr7_4:8057971-8057990 | Msa1138530:exon | 25.0% |
| ! | TACTGATGAAAAAGAAGAAA+AGG | + | chr7_4:8058051-8058070 | Msa1138530:CDS | 25.0% |
| ! | ATATACACAATCAATGAGTA+AGG | - | chr7_4:8058552-8058571 | None:intergenic | 25.0% |
| !! | CATTGATTGTGTATATGAAT+TGG | + | chr7_4:8058556-8058575 | Msa1138530:intron | 25.0% |
| !!! | CTATTTTCTAATGATTGGTT+TGG | + | chr7_4:8058593-8058612 | Msa1138530:intron | 25.0% |
| !! | CAGTGTTATTGATTATTTGA+TGG | + | chr7_4:8058818-8058837 | Msa1138530:CDS | 25.0% |
| !!! | GAATCTGTTTTTGTTAGATT+TGG | + | chr7_4:8058938-8058957 | Msa1138530:intron | 25.0% |
| ! | TAGATTTGGCATAAATCATA+TGG | + | chr7_4:8058952-8058971 | Msa1138530:intron | 25.0% |
| ! | AAAGATTACACAACTAAACA+TGG | - | chr7_4:8059014-8059033 | None:intergenic | 25.0% |
| !!! | TTTCATTTTTAGGAGTATCA+TGG | + | chr7_4:8059065-8059084 | Msa1138530:intron | 25.0% |
| !! | CATATTTTTCCGCAATATAA+AGG | - | chr7_4:8059109-8059128 | None:intergenic | 25.0% |
| ! | CTTTATATTGCGGAAAAATA+TGG | + | chr7_4:8059107-8059126 | Msa1138530:intron | 25.0% |
| ! | AATATAAAGACACATCAACT+TGG | + | chr7_4:8059249-8059268 | Msa1138530:intron | 25.0% |
| ! | ATATAAAGACACATCAACTT+GGG | + | chr7_4:8059250-8059269 | Msa1138530:intron | 25.0% |
| ! | TTAAGGATCTAAGGAAAATT+TGG | + | chr7_4:8059636-8059655 | Msa1138530:CDS | 25.0% |
| ! | TAAGGATCTAAGGAAAATTT+GGG | + | chr7_4:8059637-8059656 | Msa1138530:CDS | 25.0% |
| ! | AATCAGAATGACAATTCATT+AGG | + | chr7_4:8059914-8059933 | Msa1138530:CDS | 25.0% |
| ! | TCTACGTATATTTGTAAACT+CGG | + | chr7_4:8059952-8059971 | Msa1138530:intron | 25.0% |
| !!! | TGTAGCTTTCTTTTAAGATT+TGG | + | chr7_4:8060039-8060058 | Msa1138530:intron | 25.0% |
| !! | GATGTTTTCATAAGTTATTC+TGG | - | chr7_4:8060231-8060250 | None:intergenic | 25.0% |
| !! | ATAATGCATAGCATAAGTTT+TGG | - | chr7_4:8060276-8060295 | None:intergenic | 25.0% |
| !! | AAAGACTATTGATAACATTG+AGG | - | chr7_4:8060451-8060470 | None:intergenic | 25.0% |
| !!! | TTTTCGGATTTGTTATACAA+GGG | + | chr7_4:8060599-8060618 | Msa1138530:three_prime_UTR | 25.0% |
| !!! | AATTTTTTTTTCACCACATC+TGG | - | chr7_4:8060782-8060801 | None:intergenic | 25.0% |
| !! | ATATTGTTTTTCCACATCCA+AGG | + | chr7_4:8058170-8058189 | Msa1138530:CDS | 30.0% |
| TTCAGAAACTCGTGATAAAA+AGG | - | chr7_4:8058646-8058665 | None:intergenic | 30.0% | |
| !! | AACAAAGGTTGATTTTCTGT+TGG | + | chr7_4:8058850-8058869 | Msa1138530:CDS | 30.0% |
| !! | ACAAAGGTTGATTTTCTGTT+GGG | + | chr7_4:8058851-8058870 | Msa1138530:CDS | 30.0% |
| !! | GCATCTTTCGTTTCATTTTT+AGG | + | chr7_4:8059055-8059074 | Msa1138530:intron | 30.0% |
| ! | CGAATTTGAGATCTTTGTAA+CGG | - | chr7_4:8059162-8059181 | None:intergenic | 30.0% |
| CGTTACAAAGATCTCAAATT+CGG | + | chr7_4:8059160-8059179 | Msa1138530:intron | 30.0% | |
| GTTACTACAGTCGATAAATA+TGG | + | chr7_4:8059330-8059349 | Msa1138530:intron | 30.0% | |
| CGATAAATATGGAATCTTAG+AGG | + | chr7_4:8059341-8059360 | Msa1138530:intron | 30.0% | |
| !! | TGCATTGCTTTTAGCATAAT+TGG | + | chr7_4:8059524-8059543 | Msa1138530:intron | 30.0% |
| CATTCTACATATTCTTTGAC+AGG | + | chr7_4:8059550-8059569 | Msa1138530:intron | 30.0% | |
| ! | GACAGTGTTAGTTTATTTAC+AGG | - | chr7_4:8059758-8059777 | None:intergenic | 30.0% |
| TTCTCATAACTGAATGTATG+CGG | - | chr7_4:8059896-8059915 | None:intergenic | 30.0% | |
| GAATGACAATTCATTAGGTA+TGG | + | chr7_4:8059919-8059938 | Msa1138530:intron | 30.0% | |
| AATAGGTAAAAGAGCAATTG+AGG | - | chr7_4:8060004-8060023 | None:intergenic | 30.0% | |
| AGCAAATAGTAACATCAACA+TGG | + | chr7_4:8060098-8060117 | Msa1138530:intron | 30.0% | |
| !!! | CTTTTTTAGTAAGCTATCAC+AGG | - | chr7_4:8060169-8060188 | None:intergenic | 30.0% |
| TCAACCTGAAAAGTGAAATA+TGG | + | chr7_4:8060478-8060497 | Msa1138530:exon | 30.0% | |
| !! | GAAACCATATTTCACTTTTC+AGG | - | chr7_4:8060485-8060504 | None:intergenic | 30.0% |
| AGAGAAAAACCATACTCATT+AGG | - | chr7_4:8060580-8060599 | None:intergenic | 30.0% | |
| ! | GAGTATGGTTTTTCTCTTTT+CGG | + | chr7_4:8060583-8060602 | Msa1138530:three_prime_UTR | 30.0% |
| !!! | CTTTTCGGATTTGTTATACA+AGG | + | chr7_4:8060598-8060617 | Msa1138530:three_prime_UTR | 30.0% |
| AGAAACTCAAACACTTCTTC+AGG | + | chr7_4:8057727-8057746 | Msa1138530:five_prime_UTR | 35.0% | |
| ! | CTTTTTCTCACATGCTTTCA+TGG | - | chr7_4:8058221-8058240 | None:intergenic | 35.0% |
| CACTATGAGCCTTTATATTG+CGG | + | chr7_4:8059097-8059116 | Msa1138530:intron | 35.0% | |
| CTAGCTATACAACGCTTATA+TGG | - | chr7_4:8059210-8059229 | None:intergenic | 35.0% | |
| ! | TAAGCGTTGTATAGCTAGTT+CGG | + | chr7_4:8059212-8059231 | Msa1138530:intron | 35.0% |
| ATTTCCTACTGTGGTAGTTT+CGG | - | chr7_4:8059452-8059471 | None:intergenic | 35.0% | |
| CTTAGATCCTTAAAAACCAG+TGG | - | chr7_4:8059629-8059648 | None:intergenic | 35.0% | |
| !!! | CACTGGTTTTTAAGGATCTA+AGG | + | chr7_4:8059627-8059646 | Msa1138530:CDS | 35.0% |
| AGTATGATCCAAATCTTCCT+TGG | + | chr7_4:8059663-8059682 | Msa1138530:CDS | 35.0% | |
| GTATGATCCAAATCTTCCTT+GGG | + | chr7_4:8059664-8059683 | Msa1138530:CDS | 35.0% | |
| TTCATCAACACATTGACCAT+AGG | - | chr7_4:8059846-8059865 | None:intergenic | 35.0% | |
| CGTATATTTGTAAACTCGGA+AGG | + | chr7_4:8059956-8059975 | Msa1138530:intron | 35.0% | |
| GTAAAAGAGCAATTGAGGAA+GGG | - | chr7_4:8059999-8060018 | None:intergenic | 35.0% | |
| GATTTACGACAATATCTGGA+TGG | + | chr7_4:8060332-8060351 | Msa1138530:CDS | 35.0% | |
| TATGTAGAGCAACATCCATT+TGG | + | chr7_4:8060383-8060402 | Msa1138530:CDS | 35.0% | |
| TCACTGAAACAAGTGAATCT+TGG | + | chr7_4:8060417-8060436 | Msa1138530:CDS | 35.0% | |
| CACTGAAACAAGTGAATCTT+GGG | + | chr7_4:8060418-8060437 | Msa1138530:CDS | 35.0% | |
| ATTAAACTGCTATCCAGATG+TGG | + | chr7_4:8060766-8060785 | Msa1138530:three_prime_UTR | 35.0% | |
| !!! | GATGGTTTTTGGTGAAGCAA+AGG | + | chr7_4:8057982-8058001 | Msa1138530:CDS | 40.0% |
| TTCATGGCTATGAATGCATC+TGG | - | chr7_4:8058205-8058224 | None:intergenic | 40.0% | |
| TCCCATGTTGTGTCGAAAAT+CGG | + | chr7_4:8058445-8058464 | Msa1138530:intron | 40.0% | |
| ! | TCCGATTTTCGACACAACAT+GGG | - | chr7_4:8058449-8058468 | None:intergenic | 40.0% |
| ACACCTTCAGTTTGGATTGT+CGG | + | chr7_4:8058470-8058489 | Msa1138530:intron | 40.0% | |
| ! | TGTTTTCCTCAGTATTCGAG+AGG | + | chr7_4:8058620-8058639 | Msa1138530:intron | 40.0% |
| !! | CTGCTTTGAGAGATTTGAAG+TGG | + | chr7_4:8058669-8058688 | Msa1138530:CDS | 40.0% |
| TGATGGGAGACATGAAACAA+AGG | + | chr7_4:8058835-8058854 | Msa1138530:CDS | 40.0% | |
| TGTAGTAACTGCAGACAATC+TGG | - | chr7_4:8059319-8059338 | None:intergenic | 40.0% | |
| ACCATCCGATCTTTGACATA+TGG | + | chr7_4:8059426-8059445 | Msa1138530:intron | 40.0% | |
| TTCGGCCATATGTCAAAGAT+CGG | - | chr7_4:8059434-8059453 | None:intergenic | 40.0% | |
| TGCTGACAGCAAATCATGAT+AGG | + | chr7_4:8059471-8059490 | Msa1138530:intron | 40.0% | |
| AGCCATCACATATTGTGACA+TGG | + | chr7_4:8059815-8059834 | Msa1138530:intron | 40.0% | |
| AGCCATGTCACAATATGTGA+TGG | - | chr7_4:8059820-8059839 | None:intergenic | 40.0% | |
| TTGTGACATGGCTTAACCTA+TGG | + | chr7_4:8059827-8059846 | Msa1138530:intron | 40.0% | |
| ! | TGCGGAAAGATTGAGTTGTA+CGG | - | chr7_4:8059878-8059897 | None:intergenic | 40.0% |
| GGTAAAAGAGCAATTGAGGA+AGG | - | chr7_4:8060000-8060019 | None:intergenic | 40.0% | |
| TGGCGATTTACGACAATATC+TGG | + | chr7_4:8060328-8060347 | Msa1138530:CDS | 40.0% | |
| ACTGGCAACTGCTGAAAATA+TGG | + | chr7_4:8060355-8060374 | Msa1138530:CDS | 40.0% | |
| GTGATACGTTCTTGACCAAA+TGG | - | chr7_4:8060401-8060420 | None:intergenic | 40.0% | |
| TTGCATGCTCCTAATGAGTA+TGG | + | chr7_4:8060568-8060587 | Msa1138530:three_prime_UTR | 40.0% | |
| GGTTTAACATGCCTTGGATG+TGG | - | chr7_4:8058184-8058203 | None:intergenic | 45.0% | |
| ! | GCATCTGGTTTAACATGCCT+TGG | - | chr7_4:8058190-8058209 | None:intergenic | 45.0% |
| ! | GTCCGATTTTCGACACAACA+TGG | - | chr7_4:8058450-8058469 | None:intergenic | 45.0% |
| AATCGGACACACCTTCAGTT+TGG | + | chr7_4:8058462-8058481 | Msa1138530:intron | 45.0% | |
| !! | TTGGATTGTCGGTGCTACAT+AGG | + | chr7_4:8058481-8058500 | Msa1138530:intron | 45.0% |
| AAAAGGCCTCTCGAATACTG+AGG | - | chr7_4:8058629-8058648 | None:intergenic | 45.0% | |
| ! | AGAGATTTGAAGTGGCTGTG+TGG | + | chr7_4:8058677-8058696 | Msa1138530:CDS | 45.0% |
| CGTTGTATAGCTAGTTCGGT+AGG | + | chr7_4:8059216-8059235 | Msa1138530:intron | 45.0% | |
| GCCATATGTCAAAGATCGGA+TGG | - | chr7_4:8059430-8059449 | None:intergenic | 45.0% | |
| ATCCAAATCTTCCTTGGGAG+AGG | + | chr7_4:8059669-8059688 | Msa1138530:CDS | 45.0% | |
| TCCAAATCTTCCTTGGGAGA+GGG | + | chr7_4:8059670-8059689 | Msa1138530:CDS | 45.0% | |
| TTGTAATATCCCCTCTCCCA+AGG | - | chr7_4:8059683-8059702 | None:intergenic | 45.0% | |
| TGAGTCAAACACATTGCTGC+TGG | + | chr7_4:8059703-8059722 | Msa1138530:CDS | 45.0% | |
| ! | TGTTTTTCGTCAGCTGCTGA+TGG | + | chr7_4:8060308-8060327 | Msa1138530:intron | 45.0% |
| ACGACAATATCTGGATGGAC+TGG | + | chr7_4:8060337-8060356 | Msa1138530:CDS | 45.0% | |
| ! | GCACCGACAATCCAAACTGA+AGG | - | chr7_4:8058476-8058495 | None:intergenic | 50.0% |
| ATGGCCGAAACTACCACAGT+AGG | + | chr7_4:8059445-8059464 | Msa1138530:intron | 50.0% | |
| GCTGTCAGCATTTCCTACTG+TGG | - | chr7_4:8059461-8059480 | None:intergenic | 50.0% | |
| !!! | GCGCAAGCCACTGGTTTTTA+AGG | + | chr7_4:8059619-8059638 | Msa1138530:CDS | 50.0% |
| CCAAATCTTCCTTGGGAGAG+GGG | + | chr7_4:8059671-8059690 | Msa1138530:CDS | 50.0% | |
| GCTGGATGATTCTCCGTACA+AGG | + | chr7_4:8059721-8059740 | Msa1138530:CDS | 50.0% | |
| GGATTAAGCAGCGCCTTGTA+CGG | - | chr7_4:8059737-8059756 | None:intergenic | 50.0% | |
| GGTCTCGCAAGTGGTTATGT+CGG | - | chr7_4:8060148-8060167 | None:intergenic | 50.0% | |
| CCCCTCTCCCAAGGAAGATT+TGG | - | chr7_4:8059674-8059693 | None:intergenic | 55.0% | |
| GCTATCACAGGTCTCGCAAG+TGG | - | chr7_4:8060157-8060176 | None:intergenic | 55.0% | |
| CGAGAACAAGCGCAAGCCAC+TGG | + | chr7_4:8059610-8059629 | Msa1138530:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 8057693 | 8060816 | 8057693 | ID=Msa1138530;Name=Msa1138530 |
| chr7_4 | mRNA | 8057693 | 8060816 | 8057693 | ID=Msa1138530-mRNA-1;Parent=Msa1138530;Name=Msa1138530-mRNA-1;_AED=0.42;_eAED=0.42;_QI=61|1|1|1|0.71|0.5|8|285|274 |
| chr7_4 | exon | 8057693 | 8057748 | 8057693 | ID=Msa1138530-mRNA-1:exon:2209;Parent=Msa1138530-mRNA-1 |
| chr7_4 | exon | 8057969 | 8058229 | 8057969 | ID=Msa1138530-mRNA-1:exon:2210;Parent=Msa1138530-mRNA-1 |
| chr7_4 | exon | 8058632 | 8058713 | 8058632 | ID=Msa1138530-mRNA-1:exon:2211;Parent=Msa1138530-mRNA-1 |
| chr7_4 | exon | 8058806 | 8058872 | 8058806 | ID=Msa1138530-mRNA-1:exon:2212;Parent=Msa1138530-mRNA-1 |
| chr7_4 | exon | 8059572 | 8059757 | 8059572 | ID=Msa1138530-mRNA-1:exon:2213;Parent=Msa1138530-mRNA-1 |
| chr7_4 | exon | 8059875 | 8059935 | 8059875 | ID=Msa1138530-mRNA-1:exon:2214;Parent=Msa1138530-mRNA-1 |
| chr7_4 | exon | 8060321 | 8060657 | 8060321 | ID=Msa1138530-mRNA-1:exon:2215;Parent=Msa1138530-mRNA-1 |
| chr7_4 | exon | 8060696 | 8060816 | 8060696 | ID=Msa1138530-mRNA-1:exon:2216;Parent=Msa1138530-mRNA-1 |
| chr7_4 | five_prime_UTR | 8057693 | 8057748 | 8057693 | ID=Msa1138530-mRNA-1:five_prime_utr;Parent=Msa1138530-mRNA-1 |
| chr7_4 | five_prime_UTR | 8057969 | 8057973 | 8057969 | ID=Msa1138530-mRNA-1:five_prime_utr;Parent=Msa1138530-mRNA-1 |
| chr7_4 | CDS | 8057974 | 8058229 | 8057974 | ID=Msa1138530-mRNA-1:cds;Parent=Msa1138530-mRNA-1 |
| chr7_4 | CDS | 8058632 | 8058713 | 8058632 | ID=Msa1138530-mRNA-1:cds;Parent=Msa1138530-mRNA-1 |
| chr7_4 | CDS | 8058806 | 8058872 | 8058806 | ID=Msa1138530-mRNA-1:cds;Parent=Msa1138530-mRNA-1 |
| chr7_4 | CDS | 8059572 | 8059757 | 8059572 | ID=Msa1138530-mRNA-1:cds;Parent=Msa1138530-mRNA-1 |
| chr7_4 | CDS | 8059875 | 8059935 | 8059875 | ID=Msa1138530-mRNA-1:cds;Parent=Msa1138530-mRNA-1 |
| chr7_4 | CDS | 8060321 | 8060493 | 8060321 | ID=Msa1138530-mRNA-1:cds;Parent=Msa1138530-mRNA-1 |
| chr7_4 | three_prime_UTR | 8060494 | 8060657 | 8060494 | ID=Msa1138530-mRNA-1:three_prime_utr;Parent=Msa1138530-mRNA-1 |
| chr7_4 | three_prime_UTR | 8060696 | 8060816 | 8060696 | ID=Msa1138530-mRNA-1:three_prime_utr;Parent=Msa1138530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
