Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050410 | XP_013447616.1 | 93.727 | 271 | 11 | 2 | 4 | 274 | 1 | 265 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050410 | sp|O94336|YHM3_SCHPO | 27.228 | 202 | 135 | 6 | 48 | 245 | 18 | 211 | 2.02e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050410 | A0A072TW64 | 93.727 | 271 | 11 | 2 | 4 | 274 | 1 | 265 | 0.0 | 519 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007470 | Msa1050410 | 0.800847 | 1.189078e-48 | -8.615850e-47 |
| Msa0042550 | Msa1050410 | 0.820962 | 5.197875e-53 | -8.615850e-47 |
| Msa0049910 | Msa1050410 | 0.810807 | 9.591839e-51 | -8.615850e-47 |
| Msa0056060 | Msa1050410 | 0.814128 | 1.803627e-51 | -8.615850e-47 |
| Msa0097320 | Msa1050410 | 0.806369 | 8.504010e-50 | -8.615850e-47 |
| Msa0689780 | Msa1050410 | 0.812862 | 3.424890e-51 | -8.615850e-47 |
| Msa0731180 | Msa1050410 | 0.800481 | 1.412396e-48 | -8.615850e-47 |
| Msa0742150 | Msa1050410 | 0.823337 | 1.462599e-53 | -8.615850e-47 |
| Msa0763920 | Msa1050410 | 0.803734 | 3.025947e-49 | -8.615850e-47 |
| Msa0766090 | Msa1050410 | 0.804380 | 2.221193e-49 | -8.615850e-47 |
| Msa0809140 | Msa1050410 | 0.813640 | 2.310975e-51 | -8.615850e-47 |
| Msa0124550 | Msa1050410 | 0.802712 | 4.926853e-49 | -8.615850e-47 |
| Msa0138020 | Msa1050410 | 0.823223 | 1.555085e-53 | -8.615850e-47 |
| Msa0178510 | Msa1050410 | 0.818380 | 2.019857e-52 | -8.615850e-47 |
| Msa0410580 | Msa1050410 | 0.839497 | 1.529597e-57 | -8.615850e-47 |
| Msa0482180 | Msa1050410 | 0.809259 | 2.066976e-50 | -8.615850e-47 |
| Msa1009120 | Msa1050410 | 0.820550 | 6.465320e-53 | -8.615850e-47 |
| Msa1026410 | Msa1050410 | 0.802666 | 5.034159e-49 | -8.615850e-47 |
| Msa1050410 | Msa1098430 | 0.803298 | 3.726240e-49 | -8.615850e-47 |
| Msa1050410 | Msa1107260 | 0.801606 | 8.316327e-49 | -8.615850e-47 |
| Msa1050410 | Msa1138530 | 0.841041 | 6.042979e-58 | -8.615850e-47 |
| Msa1050410 | Msa1150810 | 0.814790 | 1.287246e-51 | -8.615850e-47 |
| Msa1050410 | Msa1207310 | 0.809264 | 2.061841e-50 | -8.615850e-47 |
| Msa1050410 | Msa1270660 | 0.807686 | 4.478421e-50 | -8.615850e-47 |
| Msa1050410 | Msa1310220 | 0.803715 | 3.054318e-49 | -8.615850e-47 |
| Msa1050410 | Msa1325430 | 0.816878 | 4.406787e-52 | -8.615850e-47 |
| Msa1050410 | Msa1335230 | 0.812552 | 4.003189e-51 | -8.615850e-47 |
| Msa1050410 | Msa1355890 | 0.821150 | 4.705230e-53 | -8.615850e-47 |
| Msa1050410 | Msa1372150 | 0.828752 | 7.549947e-55 | -8.615850e-47 |
| Msa1050410 | Msa1420270 | 0.814074 | 1.853657e-51 | -8.615850e-47 |
| Msa1050410 | Msa1423820 | 0.808223 | 3.442185e-50 | -8.615850e-47 |
| Msa1050410 | Msa1430550 | 0.811910 | 5.527082e-51 | -8.615850e-47 |
| Msa1050410 | Msa1433440 | 0.805027 | 1.627612e-49 | -8.615850e-47 |
| Msa1050410 | Msa1457160 | 0.806515 | 7.923904e-50 | -8.615850e-47 |
| Msa0278900 | Msa1050410 | 0.800983 | 1.115840e-48 | -8.615850e-47 |
| Msa0485490 | Msa1050410 | 0.817158 | 3.811873e-52 | -8.615850e-47 |
| Msa0518380 | Msa1050410 | 0.801624 | 8.247939e-49 | -8.615850e-47 |
| Msa0523910 | Msa1050410 | 0.822715 | 2.042804e-53 | -8.615850e-47 |
| Msa0876360 | Msa1050410 | 0.838658 | 2.523228e-57 | -8.615850e-47 |
| Msa0958920 | Msa1050410 | 0.808350 | 3.233436e-50 | -8.615850e-47 |
| Msa0978700 | Msa1050410 | 0.820383 | 7.060860e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050410 | MtrunA17_Chr7g0219531 | 93.727 | 271 | 11 | 2 | 4 | 274 | 1 | 265 | 0.0 | 519 |
| Msa1050410 | MtrunA17_Chr7g0219541 | 79.779 | 272 | 53 | 2 | 4 | 274 | 1 | 271 | 1.96e-159 | 444 |
| Msa1050410 | MtrunA17_Chr7g0219521 | 79.464 | 224 | 33 | 3 | 4 | 220 | 1 | 218 | 2.09e-125 | 355 |
| Msa1050410 | MtrunA17_Chr7g0219551 | 62.921 | 267 | 91 | 6 | 9 | 273 | 47 | 307 | 1.76e-118 | 342 |
| Msa1050410 | MtrunA17_Chr2g0308461 | 52.511 | 219 | 101 | 1 | 52 | 267 | 281 | 499 | 3.92e-80 | 251 |
| Msa1050410 | MtrunA17_Chr7g0265691 | 40.598 | 234 | 126 | 4 | 42 | 269 | 34 | 260 | 4.24e-57 | 184 |
| Msa1050410 | MtrunA17_Chr7g0265701 | 41.333 | 225 | 120 | 3 | 41 | 260 | 27 | 244 | 2.41e-55 | 179 |
| Msa1050410 | MtrunA17_Chr7g0265581 | 41.209 | 182 | 100 | 3 | 86 | 265 | 33 | 209 | 5.45e-48 | 159 |
| Msa1050410 | MtrunA17_Chr7g0219511 | 85.965 | 57 | 8 | 0 | 218 | 274 | 14 | 70 | 8.24e-31 | 109 |
| Msa1050410 | MtrunA17_Chr7g0255231 | 47.500 | 120 | 54 | 4 | 86 | 203 | 114 | 226 | 1.62e-28 | 108 |
| Msa1050410 | MtrunA17_Chr7g0265681 | 51.020 | 49 | 24 | 0 | 87 | 135 | 25 | 73 | 7.96e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050410 | AT3G29760.5 | 54.146 | 205 | 93 | 1 | 65 | 269 | 318 | 521 | 3.21e-82 | 256 |
| Msa1050410 | AT3G29760.3 | 54.146 | 205 | 93 | 1 | 65 | 269 | 318 | 521 | 3.21e-82 | 256 |
| Msa1050410 | AT3G29760.2 | 48.052 | 231 | 93 | 2 | 65 | 269 | 318 | 547 | 4.24e-76 | 241 |
| Msa1050410 | AT4G26190.2 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 2.68e-67 | 226 |
| Msa1050410 | AT4G26190.5 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 2.68e-67 | 226 |
| Msa1050410 | AT4G26190.3 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 2.68e-67 | 226 |
| Msa1050410 | AT4G26190.1 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 2.68e-67 | 226 |
| Msa1050410 | AT4G26190.4 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 2.68e-67 | 226 |
| Msa1050410 | AT3G29760.1 | 55.944 | 143 | 60 | 2 | 65 | 207 | 318 | 457 | 1.20e-53 | 181 |
| Msa1050410 | AT2G36540.1 | 36.979 | 192 | 102 | 4 | 72 | 263 | 72 | 244 | 5.29e-39 | 137 |
| Msa1050410 | AT2G36550.1 | 39.098 | 133 | 73 | 2 | 136 | 268 | 17 | 141 | 5.34e-28 | 105 |
| Msa1050410 | AT3G29760.4 | 50.704 | 71 | 34 | 1 | 65 | 135 | 318 | 387 | 2.83e-19 | 87.0 |
Find 41 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTGTTCTTGATTTAAA+TGG | 0.160699 | 7_2:-15002812 | Msa1050410:CDS |
| TTAAGGACCTAAGGAAAATT+TGG | 0.221126 | 7_2:-15001312 | Msa1050410:CDS |
| CAACCTGAAAAGTGAAAATA+TGG | 0.262253 | 7_2:-15000465 | Msa1050410:exon |
| TTCAGAAACTCGTGATAAAA+AGG | 0.276322 | 7_2:+15002305 | None:intergenic |
| TTGCATGCTCCTAATGAGTA+TGG | 0.283171 | 7_2:-15000375 | Msa1050410:three_prime_UTR |
| CCCCTCTCCCAAGGAAGATT+TGG | 0.307541 | 7_2:+15001277 | None:intergenic |
| TGGCGATTTACGACAATATC+TGG | 0.309720 | 7_2:-15000616 | Msa1050410:CDS |
| TAAGGACCTAAGGAAAATTT+GGG | 0.368309 | 7_2:-15001311 | Msa1050410:CDS |
| ATTGGCAACTGCTGAAAATA+TGG | 0.394758 | 7_2:-15000589 | Msa1050410:CDS |
| AATCAGAATGACAATTCATT+AGG | 0.409111 | 7_2:-15001034 | Msa1050410:intron |
| TCACTGAAACAAGTGAATCT+TGG | 0.412951 | 7_2:-15000527 | Msa1050410:CDS |
| CACTGAAACAAGTGAATCTT+GGG | 0.414915 | 7_2:-15000526 | Msa1050410:CDS |
| TTCATGGCTATGAATGCATC+TGG | 0.415674 | 7_2:+15002746 | None:intergenic |
| AGAAACTCAAACACTTCTTC+AGG | 0.427777 | 7_2:-15003222 | Msa1050410:intron |
| AGTATGATCCAAATCTTCCT+TGG | 0.468731 | 7_2:-15001285 | Msa1050410:CDS |
| GTGATACGTTCTTGACCAAA+TGG | 0.469114 | 7_2:+15000546 | None:intergenic |
| GCATCTGGTTTAACATGCCT+TGG | 0.471433 | 7_2:+15002761 | None:intergenic |
| CAGTGTTATTGATTATTTGA+TGG | 0.474248 | 7_2:-15002130 | Msa1050410:CDS |
| TATGTAGAGCAACATCCATT+TGG | 0.482270 | 7_2:-15000561 | Msa1050410:CDS |
| TATAGATTAAATGAAGAAGA+TGG | 0.484181 | 7_2:-15002984 | Msa1050410:intron |
| CGAGAACAAGCGCAAGCCAC+TGG | 0.490249 | 7_2:-15001338 | Msa1050410:CDS |
| TCAATTGAAATATTATCAGT+TGG | 0.493002 | 7_2:-15002854 | Msa1050410:CDS |
| ACGACAATATCTGGATGGAT+TGG | 0.493768 | 7_2:-15000607 | Msa1050410:CDS |
| AGTGTTATTGATTATTTGAT+GGG | 0.517466 | 7_2:-15002129 | Msa1050410:CDS |
| GTATGATCCAAATCTTCCTT+GGG | 0.519547 | 7_2:-15001284 | Msa1050410:CDS |
| CTGCTTTGAGAGATTTGAAG+TGG | 0.522255 | 7_2:-15002279 | Msa1050410:CDS |
| GCTGGATGATTCTCCGTACA+AGG | 0.528813 | 7_2:-15001227 | Msa1050410:CDS |
| GGTTTAACATGCCTTGGATG+TGG | 0.529199 | 7_2:+15002767 | None:intergenic |
| TGAGTCAAACACATTGCTGC+TGG | 0.536574 | 7_2:-15001245 | Msa1050410:CDS |
| ATCCAAATCTTCCTTGGGAG+AGG | 0.538624 | 7_2:-15001279 | Msa1050410:CDS |
| GGATTAAGCAGCGCCTTGTA+CGG | 0.548018 | 7_2:+15001214 | None:intergenic |
| CCAAATCTTCCTTGGGAGAG+GGG | 0.550802 | 7_2:-15001277 | Msa1050410:CDS |
| TCCAAATCTTCCTTGGGAGA+GGG | 0.557235 | 7_2:-15001278 | Msa1050410:CDS |
| TTGTAATATCCCCTCTCCCA+AGG | 0.593037 | 7_2:+15001268 | None:intergenic |
| TTCTCATAACTGAATGTATG+CGG | 0.630484 | 7_2:+15001055 | None:intergenic |
| GATTTACGACAATATCTGGA+TGG | 0.632612 | 7_2:-15000612 | Msa1050410:CDS |
| AAAGACTATTGATAACATTG+AGG | 0.642096 | 7_2:+15000496 | None:intergenic |
| TGCGGAAAGATTGAGTTGTA+CGG | 0.644719 | 7_2:+15001073 | None:intergenic |
| ATTAAACTGCTATCCAGATG+TGG | 0.650298 | 7_2:-15000177 | Msa1050410:three_prime_UTR |
| TGATGGGAGACATGAAACAA+AGG | 0.653332 | 7_2:-15002113 | Msa1050410:CDS |
| AGAGATTTGAAGTGGCTGTG+TGG | 0.661167 | 7_2:-15002271 | Msa1050410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAGCATTTAATTTTGAT+AGG | - | chr7_2:15000753-15000772 | Msa1050410:intron | 15.0% |
| !!! | TTAATCTATTTTCTAATGAT+TGG | - | chr7_2:15001043-15001062 | Msa1050410:CDS | 15.0% |
| !! | TATAGATTAAATGAAGAAGA+TGG | - | chr7_2:15000419-15000438 | Msa1050410:three_prime_UTR | 20.0% |
| !! | TCAATTGAAATATTATCAGT+TGG | - | chr7_2:15000549-15000568 | Msa1050410:CDS | 20.0% |
| !! | CTTATTGTTCTTGATTTAAA+TGG | - | chr7_2:15000591-15000610 | Msa1050410:CDS | 20.0% |
| !! | TTCAAATTCAAACATAAGAT+TGG | + | chr7_2:15000799-15000818 | None:intergenic | 20.0% |
| !! | TTTGTAGACAATTAGTTATT+AGG | - | chr7_2:15001201-15001220 | Msa1050410:intron | 20.0% |
| !!! | CGTCTGTTTTATAATTTTTT+AGG | - | chr7_2:15001239-15001258 | Msa1050410:CDS | 20.0% |
| !!! | AGTGTTATTGATTATTTGAT+GGG | - | chr7_2:15001274-15001293 | Msa1050410:CDS | 20.0% |
| !!! | TGTAATCTTTTCATTGTATT+AGG | - | chr7_2:15001479-15001498 | Msa1050410:intron | 20.0% |
| !!! | GTAATCTTTTCATTGTATTA+GGG | - | chr7_2:15001480-15001499 | Msa1050410:intron | 20.0% |
| !! | CATATAAAACACTGTTTAAT+AGG | + | chr7_2:15002476-15002495 | None:intergenic | 20.0% |
| !! | TAAATGAAGAAGATGGTTTT+TGG | - | chr7_2:15000426-15000445 | Msa1050410:three_prime_UTR | 25.0% |
| ! | TACTGATGAAAAAGAAGAAA+AGG | - | chr7_2:15000506-15000525 | Msa1050410:CDS | 25.0% |
| ! | ATATACACAATCAATGAGTA+AGG | + | chr7_2:15001007-15001026 | None:intergenic | 25.0% |
| !! | CATTGATTGTGTATATGAAT+TGG | - | chr7_2:15001011-15001030 | Msa1050410:intron | 25.0% |
| !! | CAGTGTTATTGATTATTTGA+TGG | - | chr7_2:15001273-15001292 | Msa1050410:CDS | 25.0% |
| ! | AAAGATTACACAACTAAACA+TGG | + | chr7_2:15001469-15001488 | None:intergenic | 25.0% |
| ! | TTTCATTTATAGCAGTATCA+TGG | - | chr7_2:15001520-15001539 | Msa1050410:intron | 25.0% |
| ! | AATATAAAGACACATCAACT+TGG | - | chr7_2:15001704-15001723 | Msa1050410:intron | 25.0% |
| ! | ATATAAAGACACATCAACTT+GGG | - | chr7_2:15001705-15001724 | Msa1050410:intron | 25.0% |
| ! | AATCAGAATGACAATTCATT+AGG | - | chr7_2:15002369-15002388 | Msa1050410:intron | 25.0% |
| ! | TCTACGTATATTTGTAAACT+CGG | - | chr7_2:15002407-15002426 | Msa1050410:intron | 25.0% |
| !!! | TGTAGCTTTCTTTTAAGATT+TGG | - | chr7_2:15002494-15002513 | Msa1050410:intron | 25.0% |
| !! | TATCTTTTAGCAATAAGTGA+AGG | - | chr7_2:15002528-15002547 | Msa1050410:intron | 25.0% |
| !!! | TTTTTTTAGTAAGCTATCAC+AGG | + | chr7_2:15002624-15002643 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCATAAACTCTCC+AGG | - | chr7_2:15002669-15002688 | Msa1050410:intron | 25.0% |
| !! | ATAATGCATAGCATAAGTTT+TGG | + | chr7_2:15002735-15002754 | None:intergenic | 25.0% |
| !! | AAAGACTATTGATAACATTG+AGG | + | chr7_2:15002910-15002929 | None:intergenic | 25.0% |
| !!! | AAACCATATTTTCACTTTTC+AGG | + | chr7_2:15002944-15002963 | None:intergenic | 25.0% |
| !!! | AATTTTTTTTTCACCACATC+TGG | + | chr7_2:15003242-15003261 | None:intergenic | 25.0% |
| !! | ATATTGTTTTTCCACATCCA+AGG | - | chr7_2:15000625-15000644 | Msa1050410:CDS | 30.0% |
| TTCAGAAACTCGTGATAAAA+AGG | + | chr7_2:15001101-15001120 | None:intergenic | 30.0% | |
| !! | AACAAAGGTTGATTTTCTGT+TGG | - | chr7_2:15001305-15001324 | Msa1050410:CDS | 30.0% |
| !! | ACAAAGGTTGATTTTCTGTT+GGG | - | chr7_2:15001306-15001325 | Msa1050410:CDS | 30.0% |
| !! | GAATCTGTTTCTGTTAGATT+TGG | - | chr7_2:15001393-15001412 | Msa1050410:intron | 30.0% |
| ! | CACATTTTTCCGCAATATAA+AGG | + | chr7_2:15001564-15001583 | None:intergenic | 30.0% |
| CTTTATATTGCGGAAAAATG+TGG | - | chr7_2:15001562-15001581 | Msa1050410:intron | 30.0% | |
| ! | CGAATTTGAGATCTTTGTAA+CGG | + | chr7_2:15001617-15001636 | None:intergenic | 30.0% |
| CGTTACAAAGATCTCAAATT+CGG | - | chr7_2:15001615-15001634 | Msa1050410:intron | 30.0% | |
| CGATAAATATGGAATCTTAG+AGG | - | chr7_2:15001796-15001815 | Msa1050410:intron | 30.0% | |
| !! | TGCATTGCTTTTAGCATAAT+TGG | - | chr7_2:15001979-15001998 | Msa1050410:intron | 30.0% |
| CATTCTACATATTCTTTGAC+AGG | - | chr7_2:15002005-15002024 | Msa1050410:intron | 30.0% | |
| TTAAGGACCTAAGGAAAATT+TGG | - | chr7_2:15002091-15002110 | Msa1050410:intron | 30.0% | |
| TAAGGACCTAAGGAAAATTT+GGG | - | chr7_2:15002092-15002111 | Msa1050410:intron | 30.0% | |
| ! | GACAGTGTTAGTTTATTTAC+AGG | + | chr7_2:15002213-15002232 | None:intergenic | 30.0% |
| TTCTCATAACTGAATGTATG+CGG | + | chr7_2:15002351-15002370 | None:intergenic | 30.0% | |
| GAATGACAATTCATTAGGTA+TGG | - | chr7_2:15002374-15002393 | Msa1050410:intron | 30.0% | |
| AATAGGTAAAAGAGCAATTG+AGG | + | chr7_2:15002459-15002478 | None:intergenic | 30.0% | |
| AGCAAATAGTAACATCAACA+TGG | - | chr7_2:15002553-15002572 | Msa1050410:intron | 30.0% | |
| ! | GATGTTTTCATAAGTTATCC+TGG | + | chr7_2:15002690-15002709 | None:intergenic | 30.0% |
| CAACCTGAAAAGTGAAAATA+TGG | - | chr7_2:15002938-15002957 | Msa1050410:CDS | 30.0% | |
| AGAGAAAAACCATACTCATT+AGG | + | chr7_2:15003040-15003059 | None:intergenic | 30.0% | |
| ! | GAGTATGGTTTTTCTCTTTT+CGG | - | chr7_2:15003043-15003062 | Msa1050410:intron | 30.0% |
| !!! | TTTTCGGATTTGTTGTACAA+GGG | - | chr7_2:15003059-15003078 | Msa1050410:intron | 30.0% |
| AGAAACTCAAACACTTCTTC+AGG | - | chr7_2:15000181-15000200 | Msa1050410:three_prime_UTR | 35.0% | |
| ! | CTTTTTCTCACATGCTTTCA+TGG | + | chr7_2:15000676-15000695 | None:intergenic | 35.0% |
| CACTATGAGCCTTTATATTG+CGG | - | chr7_2:15001552-15001571 | Msa1050410:intron | 35.0% | |
| CTAGCTATACAACGCTTATA+TGG | + | chr7_2:15001665-15001684 | None:intergenic | 35.0% | |
| ! | TAAGCGTTGTATAGCTAGTT+CGG | - | chr7_2:15001667-15001686 | Msa1050410:intron | 35.0% |
| GTCACTACAGTCGATAAATA+TGG | - | chr7_2:15001785-15001804 | Msa1050410:intron | 35.0% | |
| ATTTCCTACTGTGGTAGTTT+CGG | + | chr7_2:15001907-15001926 | None:intergenic | 35.0% | |
| ! | ACTTGTCCCAAATTTTCCTT+AGG | + | chr7_2:15002101-15002120 | None:intergenic | 35.0% |
| AGTATGATCCAAATCTTCCT+TGG | - | chr7_2:15002118-15002137 | Msa1050410:CDS | 35.0% | |
| GTATGATCCAAATCTTCCTT+GGG | - | chr7_2:15002119-15002138 | Msa1050410:CDS | 35.0% | |
| CGTATATTTGTAAACTCGGA+AGG | - | chr7_2:15002411-15002430 | Msa1050410:intron | 35.0% | |
| GTAAAAGAGCAATTGAGGAA+GGG | + | chr7_2:15002454-15002473 | None:intergenic | 35.0% | |
| GATTTACGACAATATCTGGA+TGG | - | chr7_2:15002791-15002810 | Msa1050410:CDS | 35.0% | |
| ATTGGCAACTGCTGAAAATA+TGG | - | chr7_2:15002814-15002833 | Msa1050410:CDS | 35.0% | |
| TATGTAGAGCAACATCCATT+TGG | - | chr7_2:15002842-15002861 | Msa1050410:CDS | 35.0% | |
| TCACTGAAACAAGTGAATCT+TGG | - | chr7_2:15002876-15002895 | Msa1050410:CDS | 35.0% | |
| CACTGAAACAAGTGAATCTT+GGG | - | chr7_2:15002877-15002896 | Msa1050410:CDS | 35.0% | |
| !!! | CTTTTCGGATTTGTTGTACA+AGG | - | chr7_2:15003058-15003077 | Msa1050410:intron | 35.0% |
| ATTAAACTGCTATCCAGATG+TGG | - | chr7_2:15003226-15003245 | Msa1050410:five_prime_UTR | 35.0% | |
| !!! | GATGGTTTTTGGTGAAGCAA+AGG | - | chr7_2:15000437-15000456 | Msa1050410:three_prime_UTR | 40.0% |
| TTCATGGCTATGAATGCATC+TGG | + | chr7_2:15000660-15000679 | None:intergenic | 40.0% | |
| TCCCATGTTGTGTCGAAAAT+CGG | - | chr7_2:15000900-15000919 | Msa1050410:intron | 40.0% | |
| ! | TCCGATTTTCGACACAACAT+GGG | + | chr7_2:15000904-15000923 | None:intergenic | 40.0% |
| ACACCTTCAGTTTGGATTGT+CGG | - | chr7_2:15000925-15000944 | Msa1050410:intron | 40.0% | |
| ! | TGTTTTCCTCAGTATTCGAG+AGG | - | chr7_2:15001075-15001094 | Msa1050410:CDS | 40.0% |
| !! | CTGCTTTGAGAGATTTGAAG+TGG | - | chr7_2:15001124-15001143 | Msa1050410:intron | 40.0% |
| TGATGGGAGACATGAAACAA+AGG | - | chr7_2:15001290-15001309 | Msa1050410:CDS | 40.0% | |
| ACCATCCGATCTTTGACATA+TGG | - | chr7_2:15001881-15001900 | Msa1050410:intron | 40.0% | |
| TTCGGCCATATGTCAAAGAT+CGG | + | chr7_2:15001889-15001908 | None:intergenic | 40.0% | |
| TGCTGACAGCAAATCATGAT+AGG | - | chr7_2:15001926-15001945 | Msa1050410:intron | 40.0% | |
| CTTAGGTCCTTAAAAACCAG+TGG | + | chr7_2:15002084-15002103 | None:intergenic | 40.0% | |
| !!! | CACTGGTTTTTAAGGACCTA+AGG | - | chr7_2:15002082-15002101 | Msa1050410:intron | 40.0% |
| AGCCATCACATATTGTGACA+TGG | - | chr7_2:15002270-15002289 | Msa1050410:CDS | 40.0% | |
| AGCCATGTCACAATATGTGA+TGG | + | chr7_2:15002275-15002294 | None:intergenic | 40.0% | |
| TTGTGACATGGCTTAACCTA+TGG | - | chr7_2:15002282-15002301 | Msa1050410:CDS | 40.0% | |
| TTCATCAACACGTTGACCAT+AGG | + | chr7_2:15002301-15002320 | None:intergenic | 40.0% | |
| ! | TGCGGAAAGATTGAGTTGTA+CGG | + | chr7_2:15002333-15002352 | None:intergenic | 40.0% |
| GGTAAAAGAGCAATTGAGGA+AGG | + | chr7_2:15002455-15002474 | None:intergenic | 40.0% | |
| ! | TGTTTTTCGTCAGCTGTTGA+TGG | - | chr7_2:15002767-15002786 | Msa1050410:CDS | 40.0% |
| TGGCGATTTACGACAATATC+TGG | - | chr7_2:15002787-15002806 | Msa1050410:CDS | 40.0% | |
| ACGACAATATCTGGATGGAT+TGG | - | chr7_2:15002796-15002815 | Msa1050410:CDS | 40.0% | |
| GTGATACGTTCTTGACCAAA+TGG | + | chr7_2:15002860-15002879 | None:intergenic | 40.0% | |
| TTGCATGCTCCTAATGAGTA+TGG | - | chr7_2:15003028-15003047 | Msa1050410:intron | 40.0% | |
| GGTTTAACATGCCTTGGATG+TGG | + | chr7_2:15000639-15000658 | None:intergenic | 45.0% | |
| ! | GCATCTGGTTTAACATGCCT+TGG | + | chr7_2:15000645-15000664 | None:intergenic | 45.0% |
| ! | GTCCGATTTTCGACACAACA+TGG | + | chr7_2:15000905-15000924 | None:intergenic | 45.0% |
| AATCGGACACACCTTCAGTT+TGG | - | chr7_2:15000917-15000936 | Msa1050410:intron | 45.0% | |
| !! | TTGGATTGTCGGTGCTACAT+AGG | - | chr7_2:15000936-15000955 | Msa1050410:intron | 45.0% |
| AAAAGGCCTCTCGAATACTG+AGG | + | chr7_2:15001084-15001103 | None:intergenic | 45.0% | |
| ! | AGAGATTTGAAGTGGCTGTG+TGG | - | chr7_2:15001132-15001151 | Msa1050410:intron | 45.0% |
| CGTTGTATAGCTAGTTCGGT+AGG | - | chr7_2:15001671-15001690 | Msa1050410:intron | 45.0% | |
| TGTAGTGACTGCAGACAATC+TGG | + | chr7_2:15001774-15001793 | None:intergenic | 45.0% | |
| GCCATATGTCAAAGATCGGA+TGG | + | chr7_2:15001885-15001904 | None:intergenic | 45.0% | |
| ATCCAAATCTTCCTTGGGAG+AGG | - | chr7_2:15002124-15002143 | Msa1050410:CDS | 45.0% | |
| TCCAAATCTTCCTTGGGAGA+GGG | - | chr7_2:15002125-15002144 | Msa1050410:CDS | 45.0% | |
| TTGTAATATCCCCTCTCCCA+AGG | + | chr7_2:15002138-15002157 | None:intergenic | 45.0% | |
| TGAGTCAAACACATTGCTGC+TGG | - | chr7_2:15002158-15002177 | Msa1050410:intron | 45.0% | |
| ! | GCACCGACAATCCAAACTGA+AGG | + | chr7_2:15000931-15000950 | None:intergenic | 50.0% |
| ATGGCCGAAACTACCACAGT+AGG | - | chr7_2:15001900-15001919 | Msa1050410:intron | 50.0% | |
| GCTGTCAGCATTTCCTACTG+TGG | + | chr7_2:15001916-15001935 | None:intergenic | 50.0% | |
| !!! | GCGCAAGCCACTGGTTTTTA+AGG | - | chr7_2:15002074-15002093 | Msa1050410:intron | 50.0% |
| CCAAATCTTCCTTGGGAGAG+GGG | - | chr7_2:15002126-15002145 | Msa1050410:CDS | 50.0% | |
| GCTGGATGATTCTCCGTACA+AGG | - | chr7_2:15002176-15002195 | Msa1050410:intron | 50.0% | |
| GGATTAAGCAGCGCCTTGTA+CGG | + | chr7_2:15002192-15002211 | None:intergenic | 50.0% | |
| GGTCTCGCAAGTGGTTATGT+CGG | + | chr7_2:15002603-15002622 | None:intergenic | 50.0% | |
| CCCCTCTCCCAAGGAAGATT+TGG | + | chr7_2:15002129-15002148 | None:intergenic | 55.0% | |
| GCTATCACAGGTCTCGCAAG+TGG | + | chr7_2:15002612-15002631 | None:intergenic | 55.0% | |
| CGAGAACAAGCGCAAGCCAC+TGG | - | chr7_2:15002065-15002084 | Msa1050410:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 15000149 | 15003276 | 15000149 | ID=Msa1050410;Name=Msa1050410 |
| chr7_2 | mRNA | 15000149 | 15003276 | 15000149 | ID=Msa1050410-mRNA-1;Parent=Msa1050410;Name=Msa1050410-mRNA-1;_AED=0.42;_eAED=0.42;_QI=59|1|1|1|0.71|0.5|8|286|274 |
| chr7_2 | exon | 15000149 | 15000269 | 15000149 | ID=Msa1050410-mRNA-1:exon:3629;Parent=Msa1050410-mRNA-1 |
| chr7_2 | exon | 15000308 | 15000645 | 15000308 | ID=Msa1050410-mRNA-1:exon:3628;Parent=Msa1050410-mRNA-1 |
| chr7_2 | exon | 15001035 | 15001095 | 15001035 | ID=Msa1050410-mRNA-1:exon:3627;Parent=Msa1050410-mRNA-1 |
| chr7_2 | exon | 15001213 | 15001398 | 15001213 | ID=Msa1050410-mRNA-1:exon:3626;Parent=Msa1050410-mRNA-1 |
| chr7_2 | exon | 15002098 | 15002164 | 15002098 | ID=Msa1050410-mRNA-1:exon:3625;Parent=Msa1050410-mRNA-1 |
| chr7_2 | exon | 15002257 | 15002338 | 15002257 | ID=Msa1050410-mRNA-1:exon:3624;Parent=Msa1050410-mRNA-1 |
| chr7_2 | exon | 15002741 | 15003001 | 15002741 | ID=Msa1050410-mRNA-1:exon:3623;Parent=Msa1050410-mRNA-1 |
| chr7_2 | exon | 15003223 | 15003276 | 15003223 | ID=Msa1050410-mRNA-1:exon:3622;Parent=Msa1050410-mRNA-1 |
| chr7_2 | five_prime_UTR | 15003223 | 15003276 | 15003223 | ID=Msa1050410-mRNA-1:five_prime_utr;Parent=Msa1050410-mRNA-1 |
| chr7_2 | five_prime_UTR | 15002997 | 15003001 | 15002997 | ID=Msa1050410-mRNA-1:five_prime_utr;Parent=Msa1050410-mRNA-1 |
| chr7_2 | CDS | 15002741 | 15002996 | 15002741 | ID=Msa1050410-mRNA-1:cds;Parent=Msa1050410-mRNA-1 |
| chr7_2 | CDS | 15002257 | 15002338 | 15002257 | ID=Msa1050410-mRNA-1:cds;Parent=Msa1050410-mRNA-1 |
| chr7_2 | CDS | 15002098 | 15002164 | 15002098 | ID=Msa1050410-mRNA-1:cds;Parent=Msa1050410-mRNA-1 |
| chr7_2 | CDS | 15001213 | 15001398 | 15001213 | ID=Msa1050410-mRNA-1:cds;Parent=Msa1050410-mRNA-1 |
| chr7_2 | CDS | 15001035 | 15001095 | 15001035 | ID=Msa1050410-mRNA-1:cds;Parent=Msa1050410-mRNA-1 |
| chr7_2 | CDS | 15000473 | 15000645 | 15000473 | ID=Msa1050410-mRNA-1:cds;Parent=Msa1050410-mRNA-1 |
| chr7_2 | three_prime_UTR | 15000308 | 15000472 | 15000308 | ID=Msa1050410-mRNA-1:three_prime_utr;Parent=Msa1050410-mRNA-1 |
| chr7_2 | three_prime_UTR | 15000149 | 15000269 | 15000149 | ID=Msa1050410-mRNA-1:three_prime_utr;Parent=Msa1050410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
