AlfalfaGEDB | Msa0410580

M. sativa cultivar zhongmu-4 / Msa0410580

KEGG: K00924|K04733
GO: GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410580	ACJ84452.1	82.510	263	17	2	1	234	1	263	2.98e-144	414

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410580	sp\|Q06548\|PBL9_ARATH	58.621	261	73	5	3	234	1	255	1.01e-93	284

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410580	B7FI73	82.510	263	17	2	1	234	1	263	1.42e-144	414

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003630	Msa0410580	0.804973	1.670250e-49	-8.615850e-47
Msa0005270	Msa0410580	0.802655	5.061750e-49	-8.615850e-47
Msa0007990	Msa0410580	0.820950	5.230588e-53	-8.615850e-47
Msa0008220	Msa0410580	0.816861	4.445432e-52	-8.615850e-47
Msa0012710	Msa0410580	0.802584	5.235117e-49	-8.615850e-47
Msa0015090	Msa0410580	0.814305	1.648877e-51	-8.615850e-47
Msa0017320	Msa0410580	0.816354	5.775691e-52	-8.615850e-47
Msa0029240	Msa0410580	0.817892	2.605303e-52	-8.615850e-47
Msa0031180	Msa0410580	0.825370	4.864847e-54	-8.615850e-47
Msa0042550	Msa0410580	0.859319	4.490516e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410580	MtrunA17_Chr3g0111631	82.890	263	16	2	1	234	1	263	7.07e-148	419
Msa0410580	MtrunA17_Chr5g0435211	59.924	262	75	3	3	234	1	262	1.71e-104	309
Msa0410580	MtrunA17_Chr2g0328171	60.153	261	75	2	3	234	1	261	1.31e-102	304
Msa0410580	MtrunA17_Chr7g0238671	59.542	262	74	4	3	234	1	260	1.96e-98	293
Msa0410580	MtrunA17_Chr3g0111581	59.316	263	70	5	1	234	1	255	1.38e-94	281
Msa0410580	MtrunA17_Chr2g0328211	49.430	263	90	3	3	235	1	250	3.46e-79	242
Msa0410580	MtrunA17_Chr5g0416311	53.456	217	74	3	45	234	45	261	3.68e-75	234
Msa0410580	MtrunA17_Chr8g0362661	55.607	214	68	4	48	234	106	319	4.17e-73	231
Msa0410580	MtrunA17_Chr4g0031541	48.485	264	99	6	3	234	9	267	9.63e-73	227
Msa0410580	MtrunA17_Chr5g0416011	53.043	230	79	5	32	234	94	321	4.46e-72	228

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410580	AT1G07570.1	58.621	261	73	5	3	234	1	255	1.02e-94	284
Msa0410580	AT1G07570.5	58.621	261	73	5	3	234	1	255	1.02e-94	284
Msa0410580	AT1G07570.2	58.621	261	73	5	3	234	1	255	1.02e-94	284
Msa0410580	AT2G28930.3	58.621	261	77	3	3	234	1	259	3.02e-92	278
Msa0410580	AT5G02290.2	54.406	261	84	4	3	234	1	255	2.41e-91	275
Msa0410580	AT5G02290.1	54.406	261	84	4	3	234	1	255	2.41e-91	275
Msa0410580	AT2G28930.2	58.621	261	74	4	3	234	1	256	7.72e-91	274
Msa0410580	AT1G07570.3	60.256	234	63	3	30	234	34	266	2.90e-89	270
Msa0410580	AT2G39660.1	55.172	261	81	4	3	234	1	254	7.91e-89	268
Msa0410580	AT2G28930.1	56.107	262	72	3	2	234	20	267	1.96e-86	263

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Find 66 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTCAGATTTCGGGA+TGG	0.696023	3_2:+52217663	Msa0410580:CDS
AAACCAGTACCTGGTTTAGT+AGG	0.499048	3_2:-52216843	None:intergenic
AAAGGTTGTCGGGAGAGAAG+AGG	0.643339	3_2:+52216608	Msa0410580:CDS
AATCAAGAGCTATCTTCATT+CGG	0.480254	3_2:-52217460	None:intergenic
AATGCAAAACTCTCAGATTT+CGG	0.260591	3_2:+52217658	Msa0410580:CDS
AATTCTGTGTTCTATGATGA+TGG	0.440249	3_2:+52215666	Msa0410580:exon
ACAAGAATAATGGGCACCCC+TGG	0.528327	3_2:+52217724	Msa0410580:CDS
ACACTCGCTCCTACTAAACC+AGG	0.638905	3_2:+52216834	Msa0410580:CDS
ACATGACTCTTACCACCTTC+TGG	0.399568	3_2:-52217697	None:intergenic
ACGAGGTAAGAGCCGCAACA+AGG	0.657626	3_2:+52216739	Msa0410580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCATAGAACACAGAATTGT+TGG	-	chr3_2:52215664-52215683	None:intergenic	30.0%
AATTCTGTGTTCTATGATGA+TGG	+	chr3_2:52215666-52215685	Msa0410580:exon	30.0%
ATTCTGTGTTCTATGATGAT+GGG	+	chr3_2:52215667-52215686	Msa0410580:exon	30.0%
GGATCTCAAAGTTCATAAAA+AGG	-	chr3_2:52216362-52216381	None:intergenic	30.0%
AGTGAAACACTTCAAATAGT+TGG	-	chr3_2:52216715-52216734	None:intergenic	30.0%
TTCTTAATTATTGAGCCTAC+AGG	-	chr3_2:52216935-52216954	None:intergenic	30.0%
ATTTCTGTCTACGAAATACA+AGG	-	chr3_2:52217154-52217173	None:intergenic	30.0%
TAGACAGAAATCAATTACCT+TGG	+	chr3_2:52217163-52217182	Msa0410580:intron	30.0%
CCAAATCTAGTAAAACTGAT+AGG	+	chr3_2:52217199-52217218	Msa0410580:intron	30.0%
GTATATGAATTTGTGACCAA+AGG	+	chr3_2:52217253-52217272	Msa0410580:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	52215462	52217831	52215462	ID=Msa0410580;Name=Msa0410580
chr3_2	mRNA	52215462	52217831	52215462	ID=Msa0410580-mRNA-1;Parent=Msa0410580;Name=Msa0410580-mRNA-1;_AED=0.47;_eAED=0.47;_QI=217\|0.66\|0.5\|1\|1\|1\|4\|0\|251
chr3_2	exon	52215462	52215736	52215462	ID=Msa0410580-mRNA-1:exon:10357;Parent=Msa0410580-mRNA-1
chr3_2	exon	52216598	52216923	52216598	ID=Msa0410580-mRNA-1:exon:10358;Parent=Msa0410580-mRNA-1
chr3_2	exon	52217377	52217568	52217377	ID=Msa0410580-mRNA-1:exon:10359;Parent=Msa0410580-mRNA-1
chr3_2	exon	52217652	52217831	52217652	ID=Msa0410580-mRNA-1:exon:10360;Parent=Msa0410580-mRNA-1
chr3_2	five_prime_UTR	52215462	52215678	52215462	ID=Msa0410580-mRNA-1:five_prime_utr;Parent=Msa0410580-mRNA-1
chr3_2	CDS	52215679	52215736	52215679	ID=Msa0410580-mRNA-1:cds;Parent=Msa0410580-mRNA-1
chr3_2	CDS	52216598	52216923	52216598	ID=Msa0410580-mRNA-1:cds;Parent=Msa0410580-mRNA-1
chr3_2	CDS	52217377	52217568	52217377	ID=Msa0410580-mRNA-1:cds;Parent=Msa0410580-mRNA-1
chr3_2	CDS	52217652	52217831	52217652	ID=Msa0410580-mRNA-1:cds;Parent=Msa0410580-mRNA-1

Gene Sequence

>Msa0410580

ATGATGATGGGTTGCTGCTTTAGTGCAAAGGTCAAAGCTGAGAGTCCTACACATAATGGTTTGAATTCAAAGGTTGTCGGGAGAGAAGAGGATGTTTCGAGTGGTTTAAACAGAAAGGCCTCTTCTTCATCTGTGCTTCTAAGCTCTAGGACTGAGGGTGAGATATTGCAATCCAACTATTTGAAGTGTTTCACTATCAACGAGGTAAGAGCCGCAACAAGGAACTTTCGTCCAGATAGTATGATTGGCGAAGGTGGATTTGGTTGTGTATTTAAGGGTTGGATCGACGAGCACACACTCGCTCCTACTAAACCAGGTACTGGTTTTGTTATTGCTGTCAAGAGGCTTAACCAAGAAAGCAATCAGGGACATAGTGAATGGTTGTATATTAAATCCCTCAAAATCTCATCTCTGCCTAATGTTTATGGATTAGGAGCTTCTTACTTTCAGCCACTCTCTTGGAAAATCCGAATGAAGATAGCTCTTGATTCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTCGAAGTTATATATCGAGACTTCAAAACTTCTAACATCTTGATTGATTCTAATTATAATGCAAAACTCTCAGATTTCGGGATGGCAAAAGATGGACCAGAAGGTGGTAAGAGTCATGTCTCTACAAGAATAATGGGCACCCCTGGCTATGCAGCTCCTGAGTATTTAGCCACAGGTATCTCAAAATTTATTCAAGACAGTATCAGCAAATTATTTTTGCATTTCTACTAG

Protein sequence

>Msa0410580

MMMGCCFSAKVKAESPTHNGLNSKVVGREEDVSSGLNRKASSSSVLLSSRTEGEILQSNYLKCFTINEVRAATRNFRPDSMIGEGGFGCVFKGWIDEHTLAPTKPGTGFVIAVKRLNQESNQGHSEWLYIKSLKISSLPNVYGLGASYFQPLSWKIRMKIALDSAKGLAFLHSDEVEVIYRDFKTSNILIDSNYNAKLSDFGMAKDGPEGGKSHVSTRIMGTPGYAAPEYLATGISKFIQDSISKLFLHFY*