Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172900 | XP_003591163.1 | 98.930 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 6.76e-129 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172900 | sp|Q940B0|RL183_ARATH | 83.957 | 187 | 30 | 0 | 1 | 187 | 1 | 187 | 1.15e-112 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172900 | G7I8R4 | 98.930 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 3.23e-129 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0172900 | 0.817147 | 3.834202e-52 | -8.615850e-47 |
| Msa0002790 | Msa0172900 | 0.812484 | 4.141485e-51 | -8.615850e-47 |
| Msa0032780 | Msa0172900 | 0.920589 | 1.057108e-87 | -8.615850e-47 |
| Msa0074030 | Msa0172900 | 0.817152 | 3.824216e-52 | -8.615850e-47 |
| Msa0116670 | Msa0172900 | 0.823983 | 1.032215e-53 | -8.615850e-47 |
| Msa0120520 | Msa0172900 | 0.805364 | 1.383735e-49 | -8.615850e-47 |
| Msa0133540 | Msa0172900 | 0.831856 | 1.316566e-55 | -8.615850e-47 |
| Msa0140850 | Msa0172900 | 0.828435 | 9.003565e-55 | -8.615850e-47 |
| Msa0172900 | Msa0172930 | 0.801454 | 8.935529e-49 | -8.615850e-47 |
| Msa0172900 | Msa0173530 | 0.826017 | 3.415954e-54 | -8.615850e-47 |
| Msa0172900 | Msa0181490 | 0.823837 | 1.116934e-53 | -8.615850e-47 |
| Msa0172900 | Msa0189700 | 0.828079 | 1.097222e-54 | -8.615850e-47 |
| Msa0172900 | Msa0194940 | 0.817566 | 3.085081e-52 | -8.615850e-47 |
| Msa0172900 | Msa0210360 | 0.812155 | 4.888801e-51 | -8.615850e-47 |
| Msa0172900 | Msa0218720 | 0.807835 | 4.163610e-50 | -8.615850e-47 |
| Msa0172900 | Msa0218830 | 0.820296 | 7.394496e-53 | -8.615850e-47 |
| Msa0172900 | Msa0222730 | 0.842853 | 2.006879e-58 | -8.615850e-47 |
| Msa0172900 | Msa0230490 | 0.919153 | 6.423936e-87 | -8.615850e-47 |
| Msa0172900 | Msa0232010 | 0.818623 | 1.779595e-52 | -8.615850e-47 |
| Msa0172900 | Msa0232080 | 0.819797 | 9.617383e-53 | -8.615850e-47 |
| Msa0172900 | Msa0250820 | 0.808569 | 2.903818e-50 | -8.615850e-47 |
| Msa0172900 | Msa0257450 | 0.800380 | 1.481050e-48 | -8.615850e-47 |
| Msa0172900 | Msa0264010 | 0.848078 | 7.706930e-60 | -8.615850e-47 |
| Msa0172900 | Msa0265250 | 0.800380 | 1.481050e-48 | -8.615850e-47 |
| Msa0172900 | Msa0275080 | 0.800353 | 1.499521e-48 | -8.615850e-47 |
| Msa0172900 | Msa0306690 | 0.809851 | 1.542474e-50 | -8.615850e-47 |
| Msa0172900 | Msa0317910 | 0.803996 | 2.669979e-49 | -8.615850e-47 |
| Msa0172900 | Msa0327300 | 0.812890 | 3.376101e-51 | -8.615850e-47 |
| Msa0172900 | Msa0327330 | 0.803181 | 3.940670e-49 | -8.615850e-47 |
| Msa0172900 | Msa0336010 | 0.801702 | 7.947802e-49 | -8.615850e-47 |
| Msa0172900 | Msa0348830 | 0.807943 | 3.948523e-50 | -8.615850e-47 |
| Msa0172900 | Msa0425410 | 0.809393 | 1.935163e-50 | -8.615850e-47 |
| Msa0172900 | Msa0443390 | 0.809206 | 2.121733e-50 | -8.615850e-47 |
| Msa0172900 | Msa0483110 | 0.814060 | 1.867127e-51 | -8.615850e-47 |
| Msa0172900 | Msa0584030 | 0.801675 | 8.052522e-49 | -8.615850e-47 |
| Msa0172900 | Msa0588360 | 0.818554 | 1.845154e-52 | -8.615850e-47 |
| Msa0172900 | Msa0622230 | 0.804220 | 2.398340e-49 | -8.615850e-47 |
| Msa0172900 | Msa0622750 | 0.812183 | 4.818184e-51 | -8.615850e-47 |
| Msa0172900 | Msa0698780 | 0.804615 | 1.983759e-49 | -8.615850e-47 |
| Msa0172900 | Msa0725440 | 0.803996 | 2.670240e-49 | -8.615850e-47 |
| Msa0172900 | Msa0781080 | 0.840297 | 9.464881e-58 | -8.615850e-47 |
| Msa0172900 | Msa0867060 | 0.813748 | 2.187877e-51 | -8.615850e-47 |
| Msa0172900 | Msa0881290 | 0.827340 | 1.651605e-54 | -8.615850e-47 |
| Msa0172900 | Msa1078980 | 0.802974 | 4.347974e-49 | -8.615850e-47 |
| Msa0172900 | Msa1089220 | 0.801624 | 8.246425e-49 | -8.615850e-47 |
| Msa0172900 | Msa1096900 | 0.813277 | 2.777199e-51 | -8.615850e-47 |
| Msa0172900 | Msa1105460 | 0.831938 | 1.256699e-55 | -8.615850e-47 |
| Msa0172900 | Msa1148910 | 0.807424 | 5.089294e-50 | -8.615850e-47 |
| Msa0172900 | Msa1163530 | 0.804078 | 2.567592e-49 | -8.615850e-47 |
| Msa0172900 | Msa1165640 | 0.803973 | 2.699376e-49 | -8.615850e-47 |
| Msa0172900 | Msa1167540 | 0.810478 | 1.129855e-50 | -8.615850e-47 |
| Msa0172900 | Msa1215820 | 0.819754 | 9.838434e-53 | -8.615850e-47 |
| Msa0172900 | Msa1256840 | 0.801166 | 1.023686e-48 | -8.615850e-47 |
| Msa0172900 | Msa1266060 | 0.813838 | 2.089527e-51 | -8.615850e-47 |
| Msa0172900 | Msa1273340 | 0.803629 | 3.181766e-49 | -8.615850e-47 |
| Msa0172900 | Msa1295150 | 0.802268 | 6.081733e-49 | -8.615850e-47 |
| Msa0172900 | Msa1299590 | 0.807634 | 4.592194e-50 | -8.615850e-47 |
| Msa0172900 | Msa1311400 | 0.835584 | 1.541059e-56 | -8.615850e-47 |
| Msa0172900 | Msa1332250 | 0.855198 | 7.411174e-62 | -8.615850e-47 |
| Msa0172900 | Msa1338190 | 0.827367 | 1.626540e-54 | -8.615850e-47 |
| Msa0172900 | Msa1343260 | 0.846515 | 2.069372e-59 | -8.615850e-47 |
| Msa0172900 | Msa1357350 | 0.825608 | 4.272273e-54 | -8.615850e-47 |
| Msa0172900 | Msa1362210 | 0.838504 | 2.765755e-57 | -8.615850e-47 |
| Msa0172900 | Msa1364480 | 0.802117 | 6.533188e-49 | -8.615850e-47 |
| Msa0172900 | Msa1410440 | 0.807819 | 4.194529e-50 | -8.615850e-47 |
| Msa0172900 | Msa1418770 | 0.829041 | 6.424691e-55 | -8.615850e-47 |
| Msa0172900 | Msa1426120 | 0.807109 | 5.934403e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172900 | MtrunA17_Chr1g0192271 | 98.930 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 6.22e-133 | 370 |
| Msa0172900 | MtrunA17_Chr7g0269451 | 92.021 | 188 | 14 | 1 | 1 | 187 | 1 | 188 | 1.91e-122 | 343 |
| Msa0172900 | MtrunA17_Chr7g0272381 | 85.561 | 187 | 27 | 0 | 1 | 187 | 1 | 187 | 6.27e-117 | 329 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172900 | AT5G27850.1 | 83.957 | 187 | 30 | 0 | 1 | 187 | 1 | 187 | 1.16e-113 | 321 |
| Msa0172900 | AT3G05590.1 | 83.422 | 187 | 31 | 0 | 1 | 187 | 1 | 187 | 3.89e-113 | 320 |
| Msa0172900 | AT2G47570.1 | 76.344 | 186 | 43 | 1 | 3 | 187 | 1 | 186 | 1.56e-100 | 288 |
| Msa0172900 | AT3G05590.3 | 82.836 | 134 | 23 | 0 | 54 | 187 | 1 | 134 | 3.91e-79 | 232 |
| Msa0172900 | AT3G05590.2 | 82.836 | 134 | 23 | 0 | 54 | 187 | 1 | 134 | 3.91e-79 | 232 |
| Msa0172900 | AT5G27850.2 | 82.090 | 134 | 24 | 0 | 54 | 187 | 1 | 134 | 1.39e-77 | 228 |
Find 75 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCGATCAGTTGGCTCTT+AGG | 0.165548 | 1_4:-58090537 | Msa0172900:CDS |
| AAACACATCCACAGAAAATA+AGG | 0.228828 | 1_4:+58089603 | None:intergenic |
| TATTCTTGCCCTTGCCTTCT+CGG | 0.231639 | 1_4:+58090585 | None:intergenic |
| AGATAGATATCATTGGATTT+TGG | 0.265066 | 1_4:+58091698 | None:intergenic |
| ACTGCTTCACGAGCATTCTT+TGG | 0.271538 | 1_4:+58089867 | None:intergenic |
| TGATATCTATCTCAAGCTTT+TGG | 0.326212 | 1_4:-58091687 | Msa0172900:CDS |
| GAATGGGTAGTTGTCAATTA+AGG | 0.329081 | 1_4:-58089548 | Msa0172900:three_prime_UTR |
| GTTGGCTCTTAGGGCCCCTC+TGG | 0.332505 | 1_4:-58090527 | Msa0172900:CDS |
| ATGTGATAGTATTTCTTTGC+TGG | 0.334532 | 1_4:-58089724 | Msa0172900:three_prime_UTR |
| AGCTTTATCGGTTCCTTGTT+CGG | 0.346996 | 1_4:-58090906 | Msa0172900:CDS |
| CGGTTCCTTGTTCGGAGAAC+TGG | 0.351555 | 1_4:-58090898 | Msa0172900:CDS |
| AGACAAACCATGGCTGCTTC+AGG | 0.363489 | 1_4:+58091855 | None:intergenic |
| TGGATGCAGGTCCTTCTTAG+AGG | 0.370140 | 1_4:-58089891 | Msa0172900:intron |
| ATTCGATCAGTTGGCTCTTA+GGG | 0.374062 | 1_4:-58090536 | Msa0172900:CDS |
| CACACCAAACCTTATGTTAG+AGG | 0.380593 | 1_4:-58089807 | Msa0172900:CDS |
| CTTGACTTTCCTCTAACATA+AGG | 0.385554 | 1_4:+58089798 | None:intergenic |
| CTGCTTCACGAGCATTCTTT+GGG | 0.387440 | 1_4:+58089868 | None:intergenic |
| CCTGAGTGCTGTAACCTTGA+TGG | 0.411463 | 1_4:+58090612 | None:intergenic |
| CTTTCCTCTAACATAAGGTT+TGG | 0.422789 | 1_4:+58089803 | None:intergenic |
| GGTAAAATTGCTGTCGTGGT+GGG | 0.429219 | 1_4:-58090673 | Msa0172900:CDS |
| AAGGTTGCTGCTGGTAATAC+AGG | 0.439447 | 1_4:+58091904 | None:intergenic |
| TAAGGTTTGGTGTGGCTTTG+TGG | 0.445512 | 1_4:+58089816 | None:intergenic |
| AAGCTTGAGATAGATATCAT+TGG | 0.447582 | 1_4:+58091691 | None:intergenic |
| AAGCACTTTGGTCGTGCTCC+TGG | 0.452826 | 1_4:-58089843 | Msa0172900:CDS |
| TTTGTAGGGTATCGATCTTA+AGG | 0.453950 | 1_4:-58091756 | Msa0172900:intron |
| CATTCTTTGGGCCTCTAAGA+AGG | 0.473658 | 1_4:+58089880 | None:intergenic |
| AAGGTTTGGTGTGGCTTTGT+GGG | 0.474825 | 1_4:+58089817 | None:intergenic |
| ATCAACCTTGACAAAGATAG+TGG | 0.491899 | 1_4:+58090817 | None:intergenic |
| TGCTCCACCAAGGTTGCTGC+TGG | 0.492220 | 1_4:+58091895 | None:intergenic |
| GTGTGGCTTTGTGGGACACC+AGG | 0.492305 | 1_4:+58089825 | None:intergenic |
| GTAAAATTGCTGTCGTGGTG+GGG | 0.493129 | 1_4:-58090672 | Msa0172900:CDS |
| CAAGAGGTTGTTTATGAGCA+AGG | 0.493391 | 1_4:-58090851 | Msa0172900:CDS |
| CTCTAACATAAGGTTTGGTG+TGG | 0.503784 | 1_4:+58089808 | None:intergenic |
| ATGCTTAACATTCGATCAGT+TGG | 0.511340 | 1_4:-58090545 | Msa0172900:CDS |
| TAATGAAGTTCCAGCCATCA+AGG | 0.511887 | 1_4:-58090626 | Msa0172900:CDS |
| TGTATTACCAGCAGCAACCT+TGG | 0.514970 | 1_4:-58091902 | Msa0172900:five_prime_UTR |
| TTGAGAAGGCTAGAGGAAAG+AGG | 0.516701 | 1_4:-58089770 | Msa0172900:CDS |
| AACACATCCACAGAAAATAA+GGG | 0.518981 | 1_4:+58089604 | None:intergenic |
| CGTGAAGCAGTTAAGCACTT+TGG | 0.533436 | 1_4:-58089855 | Msa0172900:CDS |
| TTGGCTCTTAGGGCCCCTCT+GGG | 0.540521 | 1_4:-58090526 | Msa0172900:CDS |
| AGGTAAAATTGCTGTCGTGG+TGG | 0.541180 | 1_4:-58090674 | Msa0172900:CDS |
| TAAAATTGCTGTCGTGGTGG+GGG | 0.545281 | 1_4:-58090671 | Msa0172900:CDS |
| TCAGGTTTACCGAGAAGGCA+AGG | 0.546899 | 1_4:-58090594 | Msa0172900:CDS |
| TCAATGCTGTTATACTCAAG+AGG | 0.549427 | 1_4:-58090867 | Msa0172900:CDS |
| TGCTGCCAGTTCTCCGAACA+AGG | 0.549972 | 1_4:+58090893 | None:intergenic |
| AGGCAAGGGCAAGAATAGAA+AGG | 0.551093 | 1_4:-58090579 | Msa0172900:CDS |
| AGTGCTGTAACCTTGATGGC+TGG | 0.551868 | 1_4:+58090616 | None:intergenic |
| GGCAAGGGCAAGAATAGAAA+GGG | 0.553936 | 1_4:-58090578 | Msa0172900:CDS |
| AGATTGACAAACCTTGCCAT+TGG | 0.555253 | 1_4:+58090786 | None:intergenic |
| TAGGGTATCGATCTTAAGGC+AGG | 0.555670 | 1_4:-58091752 | Msa0172900:CDS |
| TTGAAGACCTGAAGCAGCCA+TGG | 0.558411 | 1_4:-58091862 | Msa0172900:intron |
| AGCACTCAGGTTTACCGAGA+AGG | 0.559032 | 1_4:-58090599 | Msa0172900:CDS |
| CCATCAAGGTTACAGCACTC+AGG | 0.567655 | 1_4:-58090612 | Msa0172900:CDS |
| TGGTTTCAAAACGAAGGTGG+CGG | 0.569398 | 1_4:+58089424 | None:intergenic |
| AACCTCCACTATCTTTGTCA+AGG | 0.576324 | 1_4:-58090822 | Msa0172900:CDS |
| ATTACCAGCAGCAACCTTGG+TGG | 0.579768 | 1_4:-58091899 | Msa0172900:five_prime_UTR |
| GGCCCCTCTGGGACAAAACA+CGG | 0.583895 | 1_4:-58090515 | Msa0172900:intron |
| CCACAGAAAATAAGGGAGCA+AGG | 0.584160 | 1_4:+58089611 | None:intergenic |
| TCTGTTTGGTTTCAAAACGA+AGG | 0.596375 | 1_4:+58089418 | None:intergenic |
| GTTTGGTTTCAAAACGAAGG+TGG | 0.603989 | 1_4:+58089421 | None:intergenic |
| AGGAAGATTGAGAAGGCTAG+AGG | 0.612753 | 1_4:-58089777 | Msa0172900:CDS |
| AGGGCAAGAATAGAAAGGGC+TGG | 0.616183 | 1_4:-58090574 | Msa0172900:CDS |
| CAGGTTTACCGAGAAGGCAA+GGG | 0.616460 | 1_4:-58090593 | Msa0172900:CDS |
| GATCAAGTATACCAATGGCA+AGG | 0.626076 | 1_4:-58090797 | Msa0172900:intron |
| AAAGTCAAGGAAGATTGAGA+AGG | 0.626317 | 1_4:-58089784 | Msa0172900:CDS |
| GTTGCTGCTGGTAATACAGG+TGG | 0.635769 | 1_4:+58091907 | None:intergenic |
| TGGCTGGAACTTCATTAACA+CGG | 0.640444 | 1_4:+58090632 | None:intergenic |
| AGGTTGATCAAGTATACCAA+TGG | 0.643281 | 1_4:-58090802 | Msa0172900:CDS |
| AACCTTGACAAAGATAGTGG+AGG | 0.643571 | 1_4:+58090820 | None:intergenic |
| GGAAGGTAAAATTGCTGTCG+TGG | 0.652028 | 1_4:-58090677 | Msa0172900:CDS |
| AGAGGAAAGAGGAAGAGCAG+AGG | 0.670040 | 1_4:-58089759 | Msa0172900:CDS |
| CACGCGCGACTGCTCCACCA+AGG | 0.673017 | 1_4:+58091885 | None:intergenic |
| GGTATCGATCTTAAGGCAGG+AGG | 0.692243 | 1_4:-58091749 | Msa0172900:CDS |
| CTTATGTTAGAGGAAAGTCA+AGG | 0.705037 | 1_4:-58089797 | Msa0172900:CDS |
| GCAAGAATAGAAAGGGCTGG+TGG | 0.708893 | 1_4:-58090571 | Msa0172900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAATAATTT+AGG | + | chr1_4:58090144-58090163 | None:intergenic | 0.0% |
| !!! | TGTTTTCAAAATATTATTAT+GGG | - | chr1_4:58090057-58090076 | Msa0172900:intron | 10.0% |
| !!! | TATTATTGTTTTAAAAAACA+AGG | - | chr1_4:58090157-58090176 | Msa0172900:intron | 10.0% |
| !!! | GATTTTAATAATATAATACT+TGG | - | chr1_4:58091461-58091480 | Msa0172900:intron | 10.0% |
| !! | AGTCAAAAAAAAAAATCATT+GGG | + | chr1_4:58089839-58089858 | None:intergenic | 15.0% |
| !! | TAGTCAAAAAAAAAAATCAT+TGG | + | chr1_4:58089840-58089859 | None:intergenic | 15.0% |
| !! | AATGAAATATAACCAAAAAT+AGG | + | chr1_4:58090006-58090025 | None:intergenic | 15.0% |
| !!! | CTGTTTTCAAAATATTATTA+TGG | - | chr1_4:58090056-58090075 | Msa0172900:intron | 15.0% |
| !!! | TTAATAGAAGTGATTTTTAT+GGG | - | chr1_4:58090223-58090242 | Msa0172900:intron | 15.0% |
| !!! | GTTTTAGCTTTATAAAAAAA+TGG | + | chr1_4:58090326-58090345 | None:intergenic | 15.0% |
| !!! | TTAATTTTAAGCAAAGATTT+AGG | + | chr1_4:58091200-58091219 | None:intergenic | 15.0% |
| !!! | AATCTTTTCTTAAAATTAAC+TGG | - | chr1_4:58091077-58091096 | Msa0172900:intron | 15.0% |
| !!! | ATCTTTTCTTAAAATTAACT+GGG | - | chr1_4:58091078-58091097 | Msa0172900:intron | 15.0% |
| !!! | AAGTTTAATTTATAATGCTG+AGG | - | chr1_4:58089887-58089906 | Msa0172900:intron | 20.0% |
| !!! | AGTTTAATTTATAATGCTGA+GGG | - | chr1_4:58089888-58089907 | Msa0172900:intron | 20.0% |
| !!! | TTTTTGGTTATATTTCATTG+CGG | - | chr1_4:58090007-58090026 | Msa0172900:intron | 20.0% |
| !!! | TATTGTTTTAAAAAACAAGG+AGG | - | chr1_4:58090160-58090179 | Msa0172900:intron | 20.0% |
| !!! | GTTAATAGAAGTGATTTTTA+TGG | - | chr1_4:58090222-58090241 | Msa0172900:intron | 20.0% |
| !! | TAGATATATGAGAAAAATGA+GGG | + | chr1_4:58090356-58090375 | None:intergenic | 20.0% |
| !!! | TTACATTGAATTGTTTTGAT+TGG | - | chr1_4:58090430-58090449 | Msa0172900:intron | 20.0% |
| !! | TCAGTTTACTATAGTTATAA+TGG | - | chr1_4:58090646-58090665 | Msa0172900:CDS | 20.0% |
| !! | TACATAGGTAAATTACAAAA+TGG | + | chr1_4:58090675-58090694 | None:intergenic | 20.0% |
| !!! | ATTTTGTAATTTACCTATGT+AGG | - | chr1_4:58090674-58090693 | Msa0172900:CDS | 20.0% |
| !! | AAAAAGTTCAATCAAAAATC+AGG | + | chr1_4:58090978-58090997 | None:intergenic | 20.0% |
| !!! | TTTGATAATGATTTTCAGTA+TGG | - | chr1_4:58091728-58091747 | Msa0172900:CDS | 20.0% |
| !!! | CTAGATTTTCTAAATTACAT+TGG | - | chr1_4:58091887-58091906 | Msa0172900:five_prime_UTR | 20.0% |
| ! | AATTCAAACGTAAGAAACAA+TGG | + | chr1_4:58089592-58089611 | None:intergenic | 25.0% |
| !! | AGATAGATATCATTGGATTT+TGG | + | chr1_4:58089677-58089696 | None:intergenic | 25.0% |
| ! | AGAAATAACATAAAGCTACA+GGG | + | chr1_4:58089768-58089787 | None:intergenic | 25.0% |
| ! | AAGAAATAACATAAAGCTAC+AGG | + | chr1_4:58089769-58089788 | None:intergenic | 25.0% |
| !! | TGTCATTGACAAACAATTTT+AGG | - | chr1_4:58089793-58089812 | Msa0172900:CDS | 25.0% |
| ! | TGTTGAAATGTAAGCAAAAA+TGG | - | chr1_4:58089970-58089989 | Msa0172900:intron | 25.0% |
| ! | GTTGAAATGTAAGCAAAAAT+GGG | - | chr1_4:58089971-58089990 | Msa0172900:intron | 25.0% |
| ! | GTAGATATATGAGAAAAATG+AGG | + | chr1_4:58090357-58090376 | None:intergenic | 25.0% |
| !!! | TTTTACATGATCAGCTTTAT+CGG | - | chr1_4:58090454-58090473 | Msa0172900:intron | 25.0% |
| !!! | TGATTGAACTTTTTAGAGTA+TGG | - | chr1_4:58090984-58091003 | Msa0172900:intron | 25.0% |
| ! | TTCTTAAAATTAACTGTCTG+AGG | - | chr1_4:58091083-58091102 | Msa0172900:intron | 25.0% |
| ! | TATAGTTGTGTTCTTTATTG+TGG | - | chr1_4:58091114-58091133 | Msa0172900:intron | 25.0% |
| ! | TATAACTTTGATCTTGAACA+AGG | + | chr1_4:58091160-58091179 | None:intergenic | 25.0% |
| !!! | AATCTTTTGCTGTCATTTAT+TGG | - | chr1_4:58091276-58091295 | Msa0172900:intron | 25.0% |
| !! | TTTTCTTAAAATTAACTGGG+AGG | - | chr1_4:58091311-58091330 | Msa0172900:intron | 25.0% |
| ! | TATAGTTGTGTTCTTTATTG+TGG | - | chr1_4:58091114-58091133 | Msa0172900:intron | 25.0% |
| ! | AAGGTTTGATAGAATGAAAA+AGG | - | chr1_4:58091419-58091438 | Msa0172900:intron | 25.0% |
| ! | ATAATATAATACTTGGATGC+AGG | - | chr1_4:58091468-58091487 | Msa0172900:intron | 25.0% |
| ACGTTTGAATTGAACTTTGT+AGG | - | chr1_4:58089601-58089620 | Msa0172900:three_prime_UTR | 30.0% | |
| CGTTTGAATTGAACTTTGTA+GGG | - | chr1_4:58089602-58089621 | Msa0172900:three_prime_UTR | 30.0% | |
| AAGCTTGAGATAGATATCAT+TGG | + | chr1_4:58089684-58089703 | None:intergenic | 30.0% | |
| ! | TGATATCTATCTCAAGCTTT+TGG | - | chr1_4:58089685-58089704 | Msa0172900:three_prime_UTR | 30.0% |
| TTGCTTACATTTCAACATAG+AGG | + | chr1_4:58089967-58089986 | None:intergenic | 30.0% | |
| TATTATGGGTGTGTTTGTTT+AGG | - | chr1_4:58090071-58090090 | Msa0172900:intron | 30.0% | |
| ! | TTTTTGACCCTAAAATGAGT+TGG | - | chr1_4:58090113-58090132 | Msa0172900:intron | 30.0% |
| TGTAATTTACCTATGTAGGA+AGG | - | chr1_4:58090678-58090697 | Msa0172900:CDS | 30.0% | |
| ! | TTTTCTCTACTCTCTAACAA+AGG | - | chr1_4:58091253-58091272 | Msa0172900:intron | 30.0% |
| ATGTGATAGTATTTCTTTGC+TGG | - | chr1_4:58091648-58091667 | Msa0172900:intron | 30.0% | |
| AACACATCCACAGAAAATAA+GGG | + | chr1_4:58091771-58091790 | None:intergenic | 30.0% | |
| AAACACATCCACAGAAAATA+AGG | + | chr1_4:58091772-58091791 | None:intergenic | 30.0% | |
| !! | ACAGTTTTGATGTTAGAGAA+TGG | - | chr1_4:58091807-58091826 | Msa0172900:intron | 30.0% |
| !! | CAGTTTTGATGTTAGAGAAT+GGG | - | chr1_4:58091808-58091827 | Msa0172900:intron | 30.0% |
| GTTTAAGAGAAGACAAACCA+TGG | + | chr1_4:58089530-58089549 | None:intergenic | 35.0% | |
| !! | TTTGTAGGGTATCGATCTTA+AGG | - | chr1_4:58089616-58089635 | Msa0172900:three_prime_UTR | 35.0% |
| ! | GGGTCGAAAAAACCTATTTT+TGG | - | chr1_4:58089991-58090010 | Msa0172900:intron | 35.0% |
| TGGTTATATTTCATTGCGGA+TGG | - | chr1_4:58090011-58090030 | Msa0172900:intron | 35.0% | |
| ! | GAAAACAGATTCTTCTGAGA+TGG | + | chr1_4:58090044-58090063 | None:intergenic | 35.0% |
| ! | GGAAAAGCCAACTCATTTTA+GGG | + | chr1_4:58090123-58090142 | None:intergenic | 35.0% |
| ! | AGGAAAAGCCAACTCATTTT+AGG | + | chr1_4:58090124-58090143 | None:intergenic | 35.0% |
| TCAATGCTGTTATACTCAAG+AGG | - | chr1_4:58090505-58090524 | Msa0172900:intron | 35.0% | |
| ATCAACCTTGACAAAGATAG+TGG | + | chr1_4:58090558-58090577 | None:intergenic | 35.0% | |
| ! | AGGTTGATCAAGTATACCAA+TGG | - | chr1_4:58090570-58090589 | Msa0172900:CDS | 35.0% |
| ! | GCAATTTTACCTTCCTACAT+AGG | + | chr1_4:58090690-58090709 | None:intergenic | 35.0% |
| ATGCTTAACATTCGATCAGT+TGG | - | chr1_4:58090827-58090846 | Msa0172900:CDS | 35.0% | |
| GAAGCTGACAAAAGCTTAAT+GGG | + | chr1_4:58090896-58090915 | None:intergenic | 35.0% | |
| AGAAGCTGACAAAAGCTTAA+TGG | + | chr1_4:58090897-58090916 | None:intergenic | 35.0% | |
| ! | GTGCTATTGCTGTCATTTAA+TGG | - | chr1_4:58091046-58091065 | Msa0172900:intron | 35.0% |
| !! | GCTGTCATTTAATGGATTGA+TGG | - | chr1_4:58091054-58091073 | Msa0172900:intron | 35.0% |
| ATTGTGGTCGAATATGTTTC+AGG | - | chr1_4:58091130-58091149 | Msa0172900:intron | 35.0% | |
| ! | GCTGTCATTTATTGGATTGA+TGG | - | chr1_4:58091284-58091303 | Msa0172900:intron | 35.0% |
| TGTGCAACTATTGTGATGTA+AGG | - | chr1_4:58091400-58091419 | Msa0172900:intron | 35.0% | |
| CTTTCCTCTAACATAAGGTT+TGG | + | chr1_4:58091572-58091591 | None:intergenic | 35.0% | |
| CTTGACTTTCCTCTAACATA+AGG | + | chr1_4:58091577-58091596 | None:intergenic | 35.0% | |
| CTTATGTTAGAGGAAAGTCA+AGG | - | chr1_4:58091575-58091594 | Msa0172900:intron | 35.0% | |
| AAAGTCAAGGAAGATTGAGA+AGG | - | chr1_4:58091588-58091607 | Msa0172900:intron | 35.0% | |
| GAATGGGTAGTTGTCAATTA+AGG | - | chr1_4:58091824-58091843 | Msa0172900:intron | 35.0% | |
| TACAGGTGGAGAAAAAGCTA+GGG | + | chr1_4:58089454-58089473 | None:intergenic | 40.0% | |
| ATACAGGTGGAGAAAAAGCT+AGG | + | chr1_4:58089455-58089474 | None:intergenic | 40.0% | |
| ! | CTATCTCAAGCTTTTGGTCA+AGG | - | chr1_4:58089691-58089710 | Msa0172900:three_prime_UTR | 40.0% |
| !! | AGCTTTATCGGTTCCTTGTT+CGG | - | chr1_4:58090466-58090485 | Msa0172900:intron | 40.0% |
| CAAGAGGTTGTTTATGAGCA+AGG | - | chr1_4:58090521-58090540 | Msa0172900:CDS | 40.0% | |
| AACCTCCACTATCTTTGTCA+AGG | - | chr1_4:58090550-58090569 | Msa0172900:CDS | 40.0% | |
| ! | AACCTTGACAAAGATAGTGG+AGG | + | chr1_4:58090555-58090574 | None:intergenic | 40.0% |
| GATCAAGTATACCAATGGCA+AGG | - | chr1_4:58090575-58090594 | Msa0172900:CDS | 40.0% | |
| AGATTGACAAACCTTGCCAT+TGG | + | chr1_4:58090589-58090608 | None:intergenic | 40.0% | |
| TGGCTGGAACTTCATTAACA+CGG | + | chr1_4:58090743-58090762 | None:intergenic | 40.0% | |
| TAATGAAGTTCCAGCCATCA+AGG | - | chr1_4:58090746-58090765 | Msa0172900:intron | 40.0% | |
| ! | ATTCGATCAGTTGGCTCTTA+GGG | - | chr1_4:58090836-58090855 | Msa0172900:CDS | 40.0% |
| TTCTCTCTAGTCTCCAACAA+AGG | - | chr1_4:58091013-58091032 | Msa0172900:intron | 40.0% | |
| CACTAGAGTGATTCCTTTGT+TGG | + | chr1_4:58091029-58091048 | None:intergenic | 40.0% | |
| ! | TTCACATTTTCCCTCTGTAG+CGG | - | chr1_4:58091375-58091394 | Msa0172900:intron | 40.0% |
| GAATGAAAAAGGTTACGCTG+AGG | - | chr1_4:58091430-58091449 | Msa0172900:intron | 40.0% | |
| !! | CTCTAACATAAGGTTTGGTG+TGG | + | chr1_4:58091567-58091586 | None:intergenic | 40.0% |
| CACACCAAACCTTATGTTAG+AGG | - | chr1_4:58091565-58091584 | Msa0172900:intron | 40.0% | |
| AAGGTTGCTGCTGGTAATAC+AGG | + | chr1_4:58089471-58089490 | None:intergenic | 45.0% | |
| TGTATTACCAGCAGCAACCT+TGG | - | chr1_4:58089470-58089489 | Msa0172900:three_prime_UTR | 45.0% | |
| !! | TAGGGTATCGATCTTAAGGC+AGG | - | chr1_4:58089620-58089639 | Msa0172900:three_prime_UTR | 45.0% |
| GGAAGGTAAAATTGCTGTCG+TGG | - | chr1_4:58090695-58090714 | Msa0172900:intron | 45.0% | |
| AGGTAAAATTGCTGTCGTGG+TGG | - | chr1_4:58090698-58090717 | Msa0172900:intron | 45.0% | |
| GGTAAAATTGCTGTCGTGGT+GGG | - | chr1_4:58090699-58090718 | Msa0172900:intron | 45.0% | |
| GTAAAATTGCTGTCGTGGTG+GGG | - | chr1_4:58090700-58090719 | Msa0172900:intron | 45.0% | |
| TAAAATTGCTGTCGTGGTGG+GGG | - | chr1_4:58090701-58090720 | Msa0172900:intron | 45.0% | |
| TATTCTTGCCCTTGCCTTCT+CGG | + | chr1_4:58090790-58090809 | None:intergenic | 45.0% | |
| AGGCAAGGGCAAGAATAGAA+AGG | - | chr1_4:58090793-58090812 | Msa0172900:intron | 45.0% | |
| GGCAAGGGCAAGAATAGAAA+GGG | - | chr1_4:58090794-58090813 | Msa0172900:intron | 45.0% | |
| ! | CATTCGATCAGTTGGCTCTT+AGG | - | chr1_4:58090835-58090854 | Msa0172900:CDS | 45.0% |
| ! | ATACCGTGTTTTGTCCCAGA+GGG | + | chr1_4:58090863-58090882 | None:intergenic | 45.0% |
| AGGTTACGCTGAGGTTATAG+AGG | - | chr1_4:58091439-58091458 | Msa0172900:intron | 45.0% | |
| ! | CATTCTTTGGGCCTCTAAGA+AGG | + | chr1_4:58091495-58091514 | None:intergenic | 45.0% |
| CTGCTTCACGAGCATTCTTT+GGG | + | chr1_4:58091507-58091526 | None:intergenic | 45.0% | |
| ACTGCTTCACGAGCATTCTT+TGG | + | chr1_4:58091508-58091527 | None:intergenic | 45.0% | |
| CGTGAAGCAGTTAAGCACTT+TGG | - | chr1_4:58091517-58091536 | Msa0172900:intron | 45.0% | |
| !! | AAGGTTTGGTGTGGCTTTGT+GGG | + | chr1_4:58091558-58091577 | None:intergenic | 45.0% |
| !! | TAAGGTTTGGTGTGGCTTTG+TGG | + | chr1_4:58091559-58091578 | None:intergenic | 45.0% |
| AGGAAGATTGAGAAGGCTAG+AGG | - | chr1_4:58091595-58091614 | Msa0172900:intron | 45.0% | |
| TTGAGAAGGCTAGAGGAAAG+AGG | - | chr1_4:58091602-58091621 | Msa0172900:intron | 45.0% | |
| CCACAGAAAATAAGGGAGCA+AGG | + | chr1_4:58091764-58091783 | None:intergenic | 45.0% | |
| !!! | CCTTGCTCCCTTATTTTCTG+TGG | - | chr1_4:58091761-58091780 | Msa0172900:intron | 45.0% |
| GTTGCTGCTGGTAATACAGG+TGG | + | chr1_4:58089468-58089487 | None:intergenic | 50.0% | |
| ATTACCAGCAGCAACCTTGG+TGG | - | chr1_4:58089473-58089492 | Msa0172900:three_prime_UTR | 50.0% | |
| TTGAAGACCTGAAGCAGCCA+TGG | - | chr1_4:58089510-58089529 | Msa0172900:three_prime_UTR | 50.0% | |
| AGACAAACCATGGCTGCTTC+AGG | + | chr1_4:58089520-58089539 | None:intergenic | 50.0% | |
| !! | GGTATCGATCTTAAGGCAGG+AGG | - | chr1_4:58089623-58089642 | Msa0172900:three_prime_UTR | 50.0% |
| ! | AGTGCTGTAACCTTGATGGC+TGG | + | chr1_4:58090759-58090778 | None:intergenic | 50.0% |
| ! | CCTGAGTGCTGTAACCTTGA+TGG | + | chr1_4:58090763-58090782 | None:intergenic | 50.0% |
| CCATCAAGGTTACAGCACTC+AGG | - | chr1_4:58090760-58090779 | Msa0172900:intron | 50.0% | |
| AGCACTCAGGTTTACCGAGA+AGG | - | chr1_4:58090773-58090792 | Msa0172900:intron | 50.0% | |
| TCAGGTTTACCGAGAAGGCA+AGG | - | chr1_4:58090778-58090797 | Msa0172900:intron | 50.0% | |
| CAGGTTTACCGAGAAGGCAA+GGG | - | chr1_4:58090779-58090798 | Msa0172900:intron | 50.0% | |
| AGGGCAAGAATAGAAAGGGC+TGG | - | chr1_4:58090798-58090817 | Msa0172900:CDS | 50.0% | |
| GCAAGAATAGAAAGGGCTGG+TGG | - | chr1_4:58090801-58090820 | Msa0172900:CDS | 50.0% | |
| ! | TACCGTGTTTTGTCCCAGAG+GGG | + | chr1_4:58090862-58090881 | None:intergenic | 50.0% |
| ! | CATACCGTGTTTTGTCCCAG+AGG | + | chr1_4:58090864-58090883 | None:intergenic | 50.0% |
| GTTGCACAAACCGCTACAGA+GGG | + | chr1_4:58091388-58091407 | None:intergenic | 50.0% | |
| AGTTGCACAAACCGCTACAG+AGG | + | chr1_4:58091389-58091408 | None:intergenic | 50.0% | |
| TGGATGCAGGTCCTTCTTAG+AGG | - | chr1_4:58091481-58091500 | Msa0172900:intron | 50.0% | |
| AGAGGAAAGAGGAAGAGCAG+AGG | - | chr1_4:58091613-58091632 | Msa0172900:intron | 50.0% | |
| CGGTTCCTTGTTCGGAGAAC+TGG | - | chr1_4:58090474-58090493 | Msa0172900:intron | 55.0% | |
| TGCTGCCAGTTCTCCGAACA+AGG | + | chr1_4:58090482-58090501 | None:intergenic | 55.0% | |
| AAGCACTTTGGTCGTGCTCC+TGG | - | chr1_4:58091529-58091548 | Msa0172900:intron | 55.0% | |
| TGCTCCACCAAGGTTGCTGC+TGG | + | chr1_4:58089480-58089499 | None:intergenic | 60.0% | |
| ! | TTGGCTCTTAGGGCCCCTCT+GGG | - | chr1_4:58090846-58090865 | Msa0172900:CDS | 60.0% |
| !! | GGCCCCTCTGGGACAAAACA+CGG | - | chr1_4:58090857-58090876 | Msa0172900:CDS | 60.0% |
| !! | GTGTGGCTTTGTGGGACACC+AGG | + | chr1_4:58091550-58091569 | None:intergenic | 60.0% |
| ! | GTTGGCTCTTAGGGCCCCTC+TGG | - | chr1_4:58090845-58090864 | Msa0172900:CDS | 65.0% |
| CACGCGCGACTGCTCCACCA+AGG | + | chr1_4:58089490-58089509 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58089430 | 58091964 | 58089430 | ID=Msa0172900;Name=Msa0172900 |
| chr1_4 | mRNA | 58089430 | 58091964 | 58089430 | ID=Msa0172900-mRNA-1;Parent=Msa0172900;Name=Msa0172900-mRNA-1;_AED=0.31;_eAED=0.31;_QI=99|1|1|1|1|1|5|316|187 |
| chr1_4 | exon | 58089430 | 58089904 | 58089430 | ID=Msa0172900-mRNA-1:exon:17925;Parent=Msa0172900-mRNA-1 |
| chr1_4 | exon | 58090516 | 58090698 | 58090516 | ID=Msa0172900-mRNA-1:exon:17924;Parent=Msa0172900-mRNA-1 |
| chr1_4 | exon | 58090798 | 58090926 | 58090798 | ID=Msa0172900-mRNA-1:exon:17923;Parent=Msa0172900-mRNA-1 |
| chr1_4 | exon | 58091682 | 58091771 | 58091682 | ID=Msa0172900-mRNA-1:exon:17922;Parent=Msa0172900-mRNA-1 |
| chr1_4 | exon | 58091863 | 58091964 | 58091863 | ID=Msa0172900-mRNA-1:exon:17921;Parent=Msa0172900-mRNA-1 |
| chr1_4 | five_prime_UTR | 58091866 | 58091964 | 58091866 | ID=Msa0172900-mRNA-1:five_prime_utr;Parent=Msa0172900-mRNA-1 |
| chr1_4 | CDS | 58091863 | 58091865 | 58091863 | ID=Msa0172900-mRNA-1:cds;Parent=Msa0172900-mRNA-1 |
| chr1_4 | CDS | 58091682 | 58091771 | 58091682 | ID=Msa0172900-mRNA-1:cds;Parent=Msa0172900-mRNA-1 |
| chr1_4 | CDS | 58090798 | 58090926 | 58090798 | ID=Msa0172900-mRNA-1:cds;Parent=Msa0172900-mRNA-1 |
| chr1_4 | CDS | 58090516 | 58090698 | 58090516 | ID=Msa0172900-mRNA-1:cds;Parent=Msa0172900-mRNA-1 |
| chr1_4 | CDS | 58089746 | 58089904 | 58089746 | ID=Msa0172900-mRNA-1:cds;Parent=Msa0172900-mRNA-1 |
| chr1_4 | three_prime_UTR | 58089430 | 58089745 | 58089430 | ID=Msa0172900-mRNA-1:three_prime_utr;Parent=Msa0172900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
