Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038940 | ABN09020.1 | 86.838 | 585 | 42 | 6 | 4 | 575 | 2 | 564 | 0.0 | 1010 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038940 | sp|O23732|GSHB_BRAJU | 67.137 | 496 | 142 | 2 | 80 | 575 | 56 | 530 | 0.0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038940 | A2Q600 | 86.838 | 585 | 42 | 6 | 4 | 575 | 2 | 564 | 0.0 | 1010 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0083240 | Msa1038940 | 0.814192 | 1.746187e-51 | -8.615850e-47 |
| Msa0086190 | Msa1038940 | 0.820725 | 5.894379e-53 | -8.615850e-47 |
| Msa0609420 | Msa1038940 | 0.810018 | 1.419599e-50 | -8.615850e-47 |
| Msa0650060 | Msa1038940 | 0.810576 | 1.076208e-50 | -8.615850e-47 |
| Msa0652700 | Msa1038940 | 0.852934 | 3.331270e-61 | -8.615850e-47 |
| Msa0708600 | Msa1038940 | 0.856373 | 3.360729e-62 | -8.615850e-47 |
| Msa0129640 | Msa1038940 | 0.839882 | 1.214279e-57 | -8.615850e-47 |
| Msa0132430 | Msa1038940 | 0.852568 | 4.239894e-61 | -8.615850e-47 |
| Msa0182020 | Msa1038940 | 0.837071 | 6.450844e-57 | -8.615850e-47 |
| Msa0414720 | Msa1038940 | 0.800797 | 1.217681e-48 | -8.615850e-47 |
| Msa0459630 | Msa1038940 | 0.803660 | 3.135112e-49 | -8.615850e-47 |
| Msa0476070 | Msa1038940 | 0.802622 | 5.139819e-49 | -8.615850e-47 |
| Msa0480770 | Msa1038940 | 0.855514 | 5.994527e-62 | -8.615850e-47 |
| Msa1038940 | Msa1128720 | 0.938878 | 3.243945e-99 | -8.615850e-47 |
| Msa1038940 | Msa1165010 | 0.942125 | 1.248877e-101 | -8.615850e-47 |
| Msa1038940 | Msa1219790 | 0.801606 | 8.317778e-49 | -8.615850e-47 |
| Msa1038940 | Msa1393930 | 0.933597 | 1.473159e-95 | -8.615850e-47 |
| Msa1038940 | Msa1401550 | 0.807505 | 4.892603e-50 | -8.615850e-47 |
| Msa1038940 | Msa1412410 | 0.838479 | 2.806043e-57 | -8.615850e-47 |
| Msa1038940 | Msa1427860 | 0.834673 | 2.616237e-56 | -8.615850e-47 |
| Msa0267230 | Msa1038940 | 0.905679 | 3.325954e-80 | -8.615850e-47 |
| Msa0506360 | Msa1038940 | 0.803573 | 3.268738e-49 | -8.615850e-47 |
| Msa0945230 | Msa1038940 | 0.852830 | 3.569292e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038940 | MtrunA17_Chr7g0273151 | 81.818 | 341 | 38 | 5 | 4 | 331 | 2 | 331 | 0.0 | 536 |
| Msa1038940 | MtrunA17_Chr7g0273161 | 96.800 | 250 | 8 | 0 | 326 | 575 | 3 | 252 | 8.23e-179 | 504 |
| Msa1038940 | MtrunA17_Chr7g0273131 | 67.704 | 257 | 83 | 0 | 65 | 321 | 55 | 311 | 9.77e-119 | 354 |
| Msa1038940 | MtrunA17_Chr7g0273141 | 79.213 | 178 | 37 | 0 | 358 | 535 | 5 | 182 | 2.75e-104 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038940 | AT5G27380.1 | 67.343 | 493 | 140 | 2 | 82 | 574 | 67 | 538 | 0.0 | 710 |
Find 138 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATATTTGGTACTTATTTA+AGG | 0.124901 | 7_1:-75955280 | Msa1038940:intron |
| GTCTCAGAACTTGGGATATT+TGG | 0.168043 | 7_1:-75955293 | Msa1038940:CDS |
| GCTTGCTTCCATTTACTTTC+TGG | 0.184316 | 7_1:+75958949 | None:intergenic |
| CTGGTAGAATTTCTCCTTCT+TGG | 0.200931 | 7_1:+75957584 | None:intergenic |
| GCTGCTTCTGCTTCTGCTTT+TGG | 0.201074 | 7_1:-75959709 | Msa1038940:CDS |
| AGAGCACCTCTTAACTTATC+TGG | 0.242784 | 7_1:-75955029 | Msa1038940:three_prime_UTR |
| ACACCTGCCATCACCATTAA+TGG | 0.245975 | 7_1:-75959538 | Msa1038940:CDS |
| AAGTTCCTGTTGAATCTTCT+TGG | 0.247926 | 7_1:+75956693 | None:intergenic |
| TAGCCAAGGCCTCGGCATTC+TGG | 0.248762 | 7_1:+75958020 | None:intergenic |
| CGTCATTTCCAGAAAGTAAA+TGG | 0.257725 | 7_1:-75958957 | Msa1038940:CDS |
| AAAACTGCAGCAGAAGTATT+TGG | 0.268628 | 7_1:+75955350 | None:intergenic |
| TCTCCTTCTTGGTCAACTTC+TGG | 0.271275 | 7_1:+75957595 | None:intergenic |
| ATTCTGGCTGACAGCATTAT+TGG | 0.283845 | 7_1:+75958036 | None:intergenic |
| AGCTTATGATGCTCTTGTTT+GGG | 0.286202 | 7_1:-75959422 | Msa1038940:CDS |
| CTCTATTTGCAAAAGGGATT+TGG | 0.292630 | 7_1:+75958376 | None:intergenic |
| TATCATTATGATTGTGGTTC+AGG | 0.293008 | 7_1:-75957877 | Msa1038940:CDS |
| AGGAGAAGGAGGAATGTATT+TGG | 0.308769 | 7_1:+75959654 | None:intergenic |
| GACTTGAATTTGCAGGAATA+AGG | 0.309020 | 7_1:-75955171 | Msa1038940:intron |
| CAGTTGCAGTCATTTACTTC+AGG | 0.313042 | 7_1:-75957436 | Msa1038940:CDS |
| CTTTGCAGGACTGTGGAGTT+TGG | 0.317810 | 7_1:-75955637 | Msa1038940:CDS |
| GGCTTCATTACAAATAATTC+AGG | 0.320071 | 7_1:+75955579 | None:intergenic |
| ACAGGAGGCTCAAATGATAA+TGG | 0.320779 | 7_1:+75954980 | None:intergenic |
| CCCTTCAATATCGTATCATT+TGG | 0.320965 | 7_1:-75956722 | Msa1038940:CDS |
| CCATGGAAAATTGCTTGGTC+TGG | 0.322664 | 7_1:-75958077 | Msa1038940:CDS |
| TAGTACCTCCTCCTTCTCTC+TGG | 0.326878 | 7_1:+75955556 | None:intergenic |
| ACTATTTCATCTTCATTTGC+TGG | 0.337912 | 7_1:-75958347 | Msa1038940:CDS |
| TAGCTTATGATGCTCTTGTT+TGG | 0.342114 | 7_1:-75959423 | Msa1038940:CDS |
| AACTTAATAGGAAATAAGAT+TGG | 0.357115 | 7_1:-75958435 | Msa1038940:intron |
| CTTGTTTGGGCCTCTCTTCA+CGG | 0.363437 | 7_1:-75959409 | Msa1038940:CDS |
| AAAATGCGTGAATGCTTTGC+AGG | 0.374193 | 7_1:-75955651 | Msa1038940:CDS |
| GTTGACCGTGTTAGTTTAGA+TGG | 0.384757 | 7_1:-75958895 | Msa1038940:CDS |
| CTCTCTTCACGGTCTCCTCA+TGG | 0.391323 | 7_1:-75959398 | Msa1038940:CDS |
| ATGGAAGCAAGCTTCTGATT+TGG | 0.394917 | 7_1:-75958938 | Msa1038940:CDS |
| CAGCCAGAATGCCGAGGCCT+TGG | 0.406436 | 7_1:-75958023 | Msa1038940:CDS |
| TACAAGGTAAAGAGAGAAGA+AGG | 0.410240 | 7_1:+75959614 | None:intergenic |
| GACCACGCCGTCTCAGAACT+TGG | 0.416285 | 7_1:-75955302 | Msa1038940:CDS |
| AGATACGATGTTGAAGCAAT+AGG | 0.417582 | 7_1:-75959742 | Msa1038940:five_prime_UTR |
| CAGAAATCAGGAATGGTTCC+TGG | 0.422349 | 7_1:-75959018 | Msa1038940:CDS |
| AGTATTGATCAACAATTTCT+CGG | 0.431641 | 7_1:-75959451 | Msa1038940:CDS |
| TTTGTTGAGCTGTAGCATCT+TGG | 0.432576 | 7_1:+75958618 | None:intergenic |
| TGTTGAGCTCTATTTGCAAA+AGG | 0.432901 | 7_1:+75958369 | None:intergenic |
| CTCATAAAATTGCAGAAAAC+GGG | 0.433571 | 7_1:-75955416 | Msa1038940:CDS |
| CAGGAGGCTCAAATGATAAT+GGG | 0.436248 | 7_1:+75954981 | None:intergenic |
| CCTCATAAAATTGCAGAAAA+CGG | 0.438181 | 7_1:-75955417 | Msa1038940:CDS |
| TCAACAAGTTCATTGAATAT+AGG | 0.442386 | 7_1:+75958913 | None:intergenic |
| AGTACCTCCTCCTTCTCTCT+GGG | 0.443480 | 7_1:+75955557 | None:intergenic |
| ACTTAATAGGAAATAAGATT+GGG | 0.446606 | 7_1:-75958434 | Msa1038940:intron |
| TACTTTCTGGAAATGACGTT+GGG | 0.448557 | 7_1:+75958962 | None:intergenic |
| TCAATATCGTATCATTTGGT+TGG | 0.454140 | 7_1:-75956718 | Msa1038940:CDS |
| GCTTGGTCTGGATTCAGAAA+AGG | 0.454195 | 7_1:-75958065 | Msa1038940:CDS |
| TGATGATGATGAGACATTAG+AGG | 0.456067 | 7_1:+75959574 | None:intergenic |
| TCTTGCCATGGAAAATTGCT+TGG | 0.461118 | 7_1:-75958082 | Msa1038940:CDS |
| GACGAAGGTGGGGTTGCAGC+TGG | 0.464192 | 7_1:-75955089 | Msa1038940:CDS |
| TGGACAAAGGTATTATTGTC+TGG | 0.469663 | 7_1:+75959674 | None:intergenic |
| GATTCTGAAGGATAATCAAC+TGG | 0.471685 | 7_1:+75957401 | None:intergenic |
| GTTGAGCTCTATTTGCAAAA+GGG | 0.477698 | 7_1:+75958370 | None:intergenic |
| GACGTTGGGAATAATGCAAA+CGG | 0.479910 | 7_1:+75958976 | None:intergenic |
| AGAGGCAGACAAATATAAAC+AGG | 0.483894 | 7_1:+75954962 | None:intergenic |
| AGTTTATAACTACGGTGATA+AGG | 0.484715 | 7_1:+75957795 | None:intergenic |
| ACGTTGGGAATAATGCAAAC+GGG | 0.485054 | 7_1:+75958977 | None:intergenic |
| GAATTTGCAGGAATAAGGAT+AGG | 0.485387 | 7_1:-75955166 | Msa1038940:intron |
| CATGGGAGATAAATCTTACC+AGG | 0.493452 | 7_1:-75959380 | Msa1038940:intron |
| ATATACCCAGATAAGTTAAG+AGG | 0.495462 | 7_1:+75955023 | None:intergenic |
| CTCTTGTCACTCAACTTCAT+AGG | 0.498422 | 7_1:-75958316 | Msa1038940:intron |
| AGTTGCAGTCATTTACTTCA+GGG | 0.502680 | 7_1:-75957435 | Msa1038940:CDS |
| CCGAGGCCTTGGCTAAAGCT+TGG | 0.504909 | 7_1:-75958012 | Msa1038940:CDS |
| AGGTGCATACTTTCTTGCCA+TGG | 0.505001 | 7_1:-75958094 | Msa1038940:CDS |
| GCGAATAGAGGAGGAGGAGG+AGG | 0.507685 | 7_1:+75959487 | None:intergenic |
| CTATTGTAAGTTTATAACTA+CGG | 0.508138 | 7_1:+75957787 | None:intergenic |
| GCAGTCATTTACTTCAGGGC+TGG | 0.514362 | 7_1:-75957431 | Msa1038940:CDS |
| TCTCTTCACGGTCTCCTCAT+GGG | 0.517899 | 7_1:-75959397 | Msa1038940:CDS |
| TTCATCGCCATTAATGGTGA+TGG | 0.520509 | 7_1:+75959531 | None:intergenic |
| TATTTATGGTGAAGCAGTGC+GGG | 0.520781 | 7_1:-75955444 | Msa1038940:CDS |
| CAGGGCTATCATTATGATTG+TGG | 0.521933 | 7_1:-75957883 | Msa1038940:CDS |
| ACCAAATGATACGATATTGA+AGG | 0.522355 | 7_1:+75956721 | None:intergenic |
| TATCATCATCTGACGAAGGT+GGG | 0.522364 | 7_1:-75955100 | Msa1038940:CDS |
| TGGCTGACAGCATTATTGGC+AGG | 0.526065 | 7_1:+75958040 | None:intergenic |
| TGGCACCAAGAAGATTCAAC+AGG | 0.526530 | 7_1:-75956698 | Msa1038940:CDS |
| GAGCACCTCTTAACTTATCT+GGG | 0.528458 | 7_1:-75955028 | Msa1038940:three_prime_UTR |
| AATTTGCAGGAATAAGGATA+GGG | 0.531981 | 7_1:-75955165 | Msa1038940:intron |
| ATCAGGAATGGTTCCTGGTG+TGG | 0.532782 | 7_1:-75959013 | Msa1038940:CDS |
| GAAGGAGAAATTCTACCAGA+TGG | 0.535803 | 7_1:-75957580 | Msa1038940:CDS |
| CAACAGGAACTTGCAAAGCC+AGG | 0.536479 | 7_1:-75956682 | Msa1038940:CDS |
| TGATAATCATCAGCGAATAG+AGG | 0.539988 | 7_1:+75959475 | None:intergenic |
| TACACAGAAAGTGTTCCATC+TGG | 0.543484 | 7_1:+75957565 | None:intergenic |
| CCAAGCTTTAGCCAAGGCCT+CGG | 0.543942 | 7_1:+75958012 | None:intergenic |
| CCGATTACAGAAATCAGGAA+TGG | 0.544675 | 7_1:-75959025 | Msa1038940:intron |
| TCCTTAGCTTTGAACACGCA+TGG | 0.547326 | 7_1:-75957643 | Msa1038940:CDS |
| TCAGCGAATAGAGGAGGAGG+AGG | 0.548874 | 7_1:+75959484 | None:intergenic |
| ATATGCAGGAATGGAGAGCT+AGG | 0.552197 | 7_1:-75956777 | Msa1038940:intron |
| CAAAGCCAGGTGTTCTTGAG+AGG | 0.552723 | 7_1:-75956669 | Msa1038940:intron |
| TCAGGAATGGTTCCTGGTGT+GGG | 0.557885 | 7_1:-75959012 | Msa1038940:CDS |
| GTAATGAAGCCCCAGAGAGA+AGG | 0.558389 | 7_1:-75955567 | Msa1038940:CDS |
| ATGAAGCCCCAGAGAGAAGG+AGG | 0.563223 | 7_1:-75955564 | Msa1038940:CDS |
| ACCATGCGTGTTCAAAGCTA+AGG | 0.563501 | 7_1:+75957642 | None:intergenic |
| TTACTTTCTGGAAATGACGT+TGG | 0.567133 | 7_1:+75958961 | None:intergenic |
| TTCTTCAAGAATCTCTCTCA+AGG | 0.567231 | 7_1:-75958867 | Msa1038940:intron |
| ATGGAGAGCTAGGCTACTGA+TGG | 0.569626 | 7_1:-75956767 | Msa1038940:CDS |
| TCATCAGCGAATAGAGGAGG+AGG | 0.570573 | 7_1:+75959481 | None:intergenic |
| GAACAGCAGAAAGAAAATGC+TGG | 0.573205 | 7_1:+75957832 | None:intergenic |
| ATCATCATCTGACGAAGGTG+GGG | 0.576564 | 7_1:-75955099 | Msa1038940:CDS |
| TGGCCACTTACTGATTCTGA+AGG | 0.580546 | 7_1:+75957389 | None:intergenic |
| TCAATCCAGAACTAAGCAAG+TGG | 0.583274 | 7_1:-75958674 | Msa1038940:intron |
| CCAAATGATACGATATTGAA+GGG | 0.583942 | 7_1:+75956722 | None:intergenic |
| GGAGGAATGTATTTGGACAA+AGG | 0.587129 | 7_1:+75959661 | None:intergenic |
| TCGCCATTAATGGTGATGGC+AGG | 0.589219 | 7_1:+75959535 | None:intergenic |
| TTCGTCGAGAAATTTATACA+AGG | 0.593109 | 7_1:+75959598 | None:intergenic |
| ATGAATATCTAAAAGTCTAG+AGG | 0.596316 | 7_1:+75958642 | None:intergenic |
| CGATGTTGAAGCAATAGGCA+TGG | 0.604299 | 7_1:-75959737 | Msa1038940:exon |
| ATATCATCATCTGACGAAGG+TGG | 0.604927 | 7_1:-75955101 | Msa1038940:CDS |
| TGTAACTATACAACACACCA+TGG | 0.605619 | 7_1:+75954892 | None:intergenic |
| GCATGCATCAATCCCACACC+AGG | 0.606616 | 7_1:+75959000 | None:intergenic |
| ATGCCAGAAGTTGACCAAGA+AGG | 0.606670 | 7_1:-75957598 | Msa1038940:CDS |
| AGATACCTCTCAAGAACACC+TGG | 0.608405 | 7_1:+75956664 | None:intergenic |
| ACCACGCCGTCTCAGAACTT+GGG | 0.613931 | 7_1:-75955301 | Msa1038940:CDS |
| CATGAGGAGACCGTGAAGAG+AGG | 0.614477 | 7_1:+75959399 | None:intergenic |
| AAGCCCCAGAGAGAAGGAGG+AGG | 0.623964 | 7_1:-75955561 | Msa1038940:intron |
| AAATATCCCAAGTTCTGAGA+CGG | 0.625935 | 7_1:+75955295 | None:intergenic |
| ACTGTGGAGTTTGGATGACT+CGG | 0.630953 | 7_1:-75955628 | Msa1038940:CDS |
| GGAGTGAGTATAATAACCCC+AGG | 0.633676 | 7_1:-75957991 | Msa1038940:intron |
| CTCACTCCAAGCTTTAGCCA+AGG | 0.636780 | 7_1:+75958006 | None:intergenic |
| TGCTGTCAGCCAGAATGCCG+AGG | 0.640820 | 7_1:-75958029 | Msa1038940:CDS |
| CAGCTTACATACTTATGCAG+AGG | 0.641131 | 7_1:-75955379 | Msa1038940:CDS |
| GCGTAATGGTTGTTGGCACA+AGG | 0.648992 | 7_1:-75955324 | Msa1038940:CDS |
| CGTTGGGAATAATGCAAACG+GGG | 0.650289 | 7_1:+75958978 | None:intergenic |
| GTACCTCCTCCTTCTCTCTG+GGG | 0.656439 | 7_1:+75955558 | None:intergenic |
| TCCCAAGTTCTGAGACGGCG+TGG | 0.660655 | 7_1:+75955300 | None:intergenic |
| AAAATATCATCATCTGACGA+AGG | 0.662845 | 7_1:-75955104 | Msa1038940:CDS |
| GGCAGACAAATATAAACAGG+AGG | 0.666515 | 7_1:+75954965 | None:intergenic |
| TAATCATCAGCGAATAGAGG+AGG | 0.667692 | 7_1:+75959478 | None:intergenic |
| GTTGTCGTGAATAATCAAAG+TGG | 0.670695 | 7_1:-75955143 | Msa1038940:CDS |
| GTAACTATACAACACACCAT+GGG | 0.672655 | 7_1:+75954893 | None:intergenic |
| GAGGTGCTCTACATCAAGTG+AGG | 0.688457 | 7_1:+75955042 | None:intergenic |
| ATATTTATGGTGAAGCAGTG+CGG | 0.689917 | 7_1:-75955445 | Msa1038940:CDS |
| ATTCACCATCTAAACTAACA+CGG | 0.698126 | 7_1:+75958890 | None:intergenic |
| GGTAAGATTTATCTCCCATG+AGG | 0.699020 | 7_1:+75959383 | None:intergenic |
| GTGAATGCTTTGCAGGACTG+TGG | 0.717162 | 7_1:-75955644 | Msa1038940:CDS |
| ATAACGTAAAATAAACAACG+TGG | 0.837611 | 7_1:+75954916 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTTTTTTTTATAAAG+TGG | - | chr7_1:75956095-75956114 | Msa1038940:intron | 10.0% |
| !!! | TTTATATTTTAAACATATTC+TGG | - | chr7_1:75956920-75956939 | Msa1038940:intron | 10.0% |
| !!! | AAATACAAATCAATATATTT+TGG | + | chr7_1:75958832-75958851 | None:intergenic | 10.0% |
| !! | TCAACAAATAATATTACTTA+TGG | + | chr7_1:75957548-75957567 | None:intergenic | 15.0% |
| !!! | AAGTAATATTATTTGTTGAT+TGG | - | chr7_1:75957549-75957568 | Msa1038940:intron | 15.0% |
| !! | GTTTAAATATTTATCTTATC+CGG | - | chr7_1:75958564-75958583 | Msa1038940:intron | 15.0% |
| !!! | AATATAATTTTCAACAAAGT+TGG | + | chr7_1:75959105-75959124 | None:intergenic | 15.0% |
| !! | AAATGAAAATAAGAAGAAGA+AGG | + | chr7_1:75955255-75955274 | None:intergenic | 20.0% |
| !! | CATAGTAATTTACAAAATCA+CGG | - | chr7_1:75955380-75955399 | Msa1038940:CDS | 20.0% |
| !! | ATTTGAGCTGTAAATAAATT+AGG | - | chr7_1:75955502-75955521 | Msa1038940:intron | 20.0% |
| !!! | TTTTTTATAAAGTGGATCAA+AGG | - | chr7_1:75956103-75956122 | Msa1038940:intron | 20.0% |
| !!! | TGATATATTACTTTTACTGT+TGG | - | chr7_1:75956133-75956152 | Msa1038940:intron | 20.0% |
| !! | AACTTAATAGGAAATAAGAT+TGG | - | chr7_1:75956165-75956184 | Msa1038940:intron | 20.0% |
| !! | ACTTAATAGGAAATAAGATT+GGG | - | chr7_1:75956166-75956185 | Msa1038940:intron | 20.0% |
| !! | CTATTGTAAGTTTATAACTA+CGG | + | chr7_1:75956816-75956835 | None:intergenic | 20.0% |
| !! | AAAGTGTAGTTTATCATATA+AGG | - | chr7_1:75956886-75956905 | Msa1038940:intron | 20.0% |
| !!! | CAATTTTTTTACTGTAGTAA+TGG | - | chr7_1:75957136-75957155 | Msa1038940:intron | 20.0% |
| !!! | AATATTATTTGTTGATTGGT+CGG | - | chr7_1:75957553-75957572 | Msa1038940:intron | 20.0% |
| !! | GTTTGAAAAAAGTAATCTAA+CGG | + | chr7_1:75957640-75957659 | None:intergenic | 20.0% |
| !! | CATGATTAATCAAATAAGTA+AGG | + | chr7_1:75958128-75958147 | None:intergenic | 20.0% |
| !! | CTTACTTATTTGATTAATCA+TGG | - | chr7_1:75958126-75958145 | Msa1038940:intron | 20.0% |
| !! | TATTTGATTAATCATGGATA+TGG | - | chr7_1:75958132-75958151 | Msa1038940:intron | 20.0% |
| !!! | AATTTTGGAAGAAAAATTGA+AGG | + | chr7_1:75958608-75958627 | None:intergenic | 20.0% |
| !! | GAAAAAAAAGCAAAATAAGA+AGG | - | chr7_1:75958642-75958661 | Msa1038940:CDS | 20.0% |
| !!! | GAAGGAAAAAAAAATCATTT+TGG | - | chr7_1:75958660-75958679 | Msa1038940:CDS | 20.0% |
| !!! | AAAAAATCATTTTGGATGAT+CGG | - | chr7_1:75958668-75958687 | Msa1038940:CDS | 20.0% |
| !!! | ATGATCTGTAATTATTTTTC+AGG | - | chr7_1:75959127-75959146 | Msa1038940:intron | 20.0% |
| !!! | TTTTCAGGAAACAATATTTA+TGG | - | chr7_1:75959142-75959161 | Msa1038940:intron | 20.0% |
| !!! | AGTATTGATCAACAATTTCT+CGG | - | chr7_1:75955149-75955168 | Msa1038940:CDS | 25.0% |
| ! | GGTTAGTAAAAATGAGTTTA+TGG | + | chr7_1:75955316-75955335 | None:intergenic | 25.0% |
| ! | AAACTCATTGTAAAACCAAA+CGG | + | chr7_1:75955352-75955371 | None:intergenic | 25.0% |
| ! | TTTAAAAAGATGAACAAGCA+AGG | - | chr7_1:75955525-75955544 | Msa1038940:intron | 25.0% |
| ! | TCAACAAGTTCATTGAATAT+AGG | + | chr7_1:75955690-75955709 | None:intergenic | 25.0% |
| ! | TATTCTTATTCATTGTCAAG+TGG | - | chr7_1:75955790-75955809 | Msa1038940:intron | 25.0% |
| ! | ATTCTTATTCATTGTCAAGT+GGG | - | chr7_1:75955791-75955810 | Msa1038940:intron | 25.0% |
| ! | TGACAATTAAAAGCTGAAAA+TGG | + | chr7_1:75955878-75955897 | None:intergenic | 25.0% |
| ! | ATGAATATCTAAAAGTCTAG+AGG | + | chr7_1:75955961-75955980 | None:intergenic | 25.0% |
| !! | TGGCATCAATTTAACTTAAT+AGG | - | chr7_1:75956153-75956172 | Msa1038940:intron | 25.0% |
| ! | GAAGTGAAACAAATATCTAA+AGG | + | chr7_1:75956368-75956387 | None:intergenic | 25.0% |
| !! | GAAAAAGGATATTTGTTTCT+CGG | + | chr7_1:75956641-75956660 | None:intergenic | 25.0% |
| ! | AGAATAAAGTGAACTGAAAA+AGG | + | chr7_1:75956656-75956675 | None:intergenic | 25.0% |
| !! | CTTTATTCTACTGCTTATTT+TGG | - | chr7_1:75956667-75956686 | Msa1038940:intron | 25.0% |
| ! | TGGAATCATTCAGAAATATA+AGG | + | chr7_1:75956695-75956714 | None:intergenic | 25.0% |
| ! | ACAAGCAAGAAAAAATAAAC+TGG | + | chr7_1:75957234-75957253 | None:intergenic | 25.0% |
| ! | AACTCATTATCTGAAAGATT+AGG | - | chr7_1:75957307-75957326 | Msa1038940:intron | 25.0% |
| ! | ATTATCTGAAAGATTAGGAA+AGG | - | chr7_1:75957312-75957331 | Msa1038940:intron | 25.0% |
| ! | AAACCAACAGAACAAAAATA+AGG | + | chr7_1:75957424-75957443 | None:intergenic | 25.0% |
| ! | GGAAGTTATTTATCTTCAAA+AGG | + | chr7_1:75957499-75957518 | None:intergenic | 25.0% |
| ! | AAGATAAATAACTTCCAGTT+TGG | - | chr7_1:75957503-75957522 | Msa1038940:intron | 25.0% |
| ! | GTAATCTAACGGTAAAAAAA+AGG | + | chr7_1:75957629-75957648 | None:intergenic | 25.0% |
| ! | AACAATAACTGAAAAAAGCA+AGG | + | chr7_1:75957986-75958005 | None:intergenic | 25.0% |
| ! | TTAATCAAATAAGTAAGGCA+TGG | + | chr7_1:75958123-75958142 | None:intergenic | 25.0% |
| !! | AATTAGCTTCTAACAAGATA+TGG | + | chr7_1:75958225-75958244 | None:intergenic | 25.0% |
| !! | AAATTGAAGGTACAAGAAAA+GGG | + | chr7_1:75958595-75958614 | None:intergenic | 25.0% |
| !! | AAAATTGAAGGTACAAGAAA+AGG | + | chr7_1:75958596-75958615 | None:intergenic | 25.0% |
| ! | ATACTTCCTATTATGGTTAT+AGG | - | chr7_1:75958724-75958743 | Msa1038940:intron | 25.0% |
| ! | GTAATTCCTATAACCATAAT+AGG | + | chr7_1:75958733-75958752 | None:intergenic | 25.0% |
| ! | GGATATTTGGTACTTATTTA+AGG | - | chr7_1:75959320-75959339 | Msa1038940:intron | 25.0% |
| ! | TCTGCAAAAAATTGAAAGAA+GGG | - | chr7_1:75959658-75959677 | Msa1038940:CDS | 25.0% |
| ! | ATAACGTAAAATAAACAACG+TGG | + | chr7_1:75959687-75959706 | None:intergenic | 25.0% |
| !!! | TTTGAGTAAAAAGCATTAAC+AGG | + | chr7_1:75959743-75959762 | None:intergenic | 25.0% |
| TTCGTCGAGAAATTTATACA+AGG | + | chr7_1:75955005-75955024 | None:intergenic | 30.0% | |
| ! | TTTTTCCGATTACAGAAATC+AGG | - | chr7_1:75955570-75955589 | Msa1038940:CDS | 30.0% |
| ATTCACCATCTAAACTAACA+CGG | + | chr7_1:75955713-75955732 | None:intergenic | 30.0% | |
| AGTGAAGTGAATTAGTAGAA+CGG | + | chr7_1:75955760-75955779 | None:intergenic | 30.0% | |
| ATGGAAAAGACGTAGAAAAA+AGG | + | chr7_1:75955859-75955878 | None:intergenic | 30.0% | |
| TATGTAGCGTTATTGTGAAA+AGG | + | chr7_1:75956068-75956087 | None:intergenic | 30.0% | |
| ACTATTTCATCTTCATTTGC+TGG | - | chr7_1:75956253-75956272 | Msa1038940:intron | 30.0% | |
| !! | AAATTCTGAGGTGAAACATA+GGG | + | chr7_1:75956452-75956471 | None:intergenic | 30.0% |
| !! | AAAATTCTGAGGTGAAACAT+AGG | + | chr7_1:75956453-75956472 | None:intergenic | 30.0% |
| ! | TTTTTCTGACCCAATTGTTT+CGG | - | chr7_1:75956470-75956489 | Msa1038940:intron | 30.0% |
| AATCACAAACCGAAACAATT+GGG | + | chr7_1:75956482-75956501 | None:intergenic | 30.0% | |
| AAATCACAAACCGAAACAAT+TGG | + | chr7_1:75956483-75956502 | None:intergenic | 30.0% | |
| ATTTCTGAATGATTCCATAC+AGG | - | chr7_1:75956698-75956717 | Msa1038940:CDS | 30.0% | |
| TTTCTGAATGATTCCATACA+GGG | - | chr7_1:75956699-75956718 | Msa1038940:CDS | 30.0% | |
| TATCATTATGATTGTGGTTC+AGG | - | chr7_1:75956723-75956742 | Msa1038940:CDS | 30.0% | |
| AGTTTATAACTACGGTGATA+AGG | + | chr7_1:75956808-75956827 | None:intergenic | 30.0% | |
| TAAAGAAAGTCAGTTTCTGA+TGG | + | chr7_1:75957073-75957092 | None:intergenic | 30.0% | |
| ! | ACTGACTTTCTTTAAGTTTG+TGG | - | chr7_1:75957079-75957098 | Msa1038940:intron | 30.0% |
| !! | AAAAGGTGTTCAATACTTGT+AGG | + | chr7_1:75957482-75957501 | None:intergenic | 30.0% |
| ! | TATGGAACTCAACTATTTTG+AGG | + | chr7_1:75957530-75957549 | None:intergenic | 30.0% |
| ACCTCAATCTTTCTATTCTA+TGG | - | chr7_1:75957682-75957701 | Msa1038940:intron | 30.0% | |
| TCCATAGAATAGAAAGATTG+AGG | + | chr7_1:75957686-75957705 | None:intergenic | 30.0% | |
| CCAAATGATACGATATTGAA+GGG | + | chr7_1:75957881-75957900 | None:intergenic | 30.0% | |
| ACCAAATGATACGATATTGA+AGG | + | chr7_1:75957882-75957901 | None:intergenic | 30.0% | |
| TCAATATCGTATCATTTGGT+TGG | - | chr7_1:75957882-75957901 | Msa1038940:CDS | 30.0% | |
| CCAACCAATCAAATCATAAA+TGG | + | chr7_1:75958167-75958186 | None:intergenic | 30.0% | |
| CCATTTATGATTTGATTGGT+TGG | - | chr7_1:75958164-75958183 | Msa1038940:intron | 30.0% | |
| TGCATCGTTAATAACTGAAA+CGG | - | chr7_1:75958294-75958313 | Msa1038940:intron | 30.0% | |
| TCATAAGAATGAATTCAACG+CGG | - | chr7_1:75958394-75958413 | Msa1038940:CDS | 30.0% | |
| !! | GTTTTGATGTTAGAGAAAAC+TGG | - | chr7_1:75958416-75958435 | Msa1038940:CDS | 30.0% |
| ! | CGTTAAATCATGATTAGTTG+CGG | + | chr7_1:75958442-75958461 | None:intergenic | 30.0% |
| CGCAACTAATCATGATTTAA+CGG | - | chr7_1:75958440-75958459 | Msa1038940:intron | 30.0% | |
| GCAACTAATCATGATTTAAC+GGG | - | chr7_1:75958441-75958460 | Msa1038940:intron | 30.0% | |
| ! | AATTGAAGGTACAAGAAAAG+GGG | + | chr7_1:75958594-75958613 | None:intergenic | 30.0% |
| ! | CAAGACAGAACAAGTAATTT+TGG | + | chr7_1:75958623-75958642 | None:intergenic | 30.0% |
| TGTAAATGAATATGTTCCCT+TGG | - | chr7_1:75958691-75958710 | Msa1038940:intron | 30.0% | |
| TACACTCATACTTCCTATTA+TGG | - | chr7_1:75958717-75958736 | Msa1038940:intron | 30.0% | |
| !!! | CAGTTTTGATTCAAGGATTT+AGG | + | chr7_1:75958894-75958913 | None:intergenic | 30.0% |
| GGCTTCATTACAAATAATTC+AGG | + | chr7_1:75959024-75959043 | None:intergenic | 30.0% | |
| ! | AAAGTTAGATCACGTTTTAG+GGG | + | chr7_1:75959073-75959092 | None:intergenic | 30.0% |
| ! | GAAAGTTAGATCACGTTTTA+GGG | + | chr7_1:75959074-75959093 | None:intergenic | 30.0% |
| ! | AGAAAGTTAGATCACGTTTT+AGG | + | chr7_1:75959075-75959094 | None:intergenic | 30.0% |
| ! | CGTTTTCTGCAATTTTATGA+GGG | + | chr7_1:75959185-75959204 | None:intergenic | 30.0% |
| CCTCATAAAATTGCAGAAAA+CGG | - | chr7_1:75959183-75959202 | Msa1038940:intron | 30.0% | |
| CTCATAAAATTGCAGAAAAC+GGG | - | chr7_1:75959184-75959203 | Msa1038940:intron | 30.0% | |
| GACTATATATCTCTATAGCT+CGG | - | chr7_1:75959353-75959372 | Msa1038940:intron | 30.0% | |
| AATTTGCAGGAATAAGGATA+GGG | - | chr7_1:75959435-75959454 | Msa1038940:CDS | 30.0% | |
| AAAATATCATCATCTGACGA+AGG | - | chr7_1:75959496-75959515 | Msa1038940:CDS | 30.0% | |
| ATATACCCAGATAAGTTAAG+AGG | + | chr7_1:75959580-75959599 | None:intergenic | 30.0% | |
| !!! | CTTCTTTCAATTTTTTGCAG+AGG | + | chr7_1:75959659-75959678 | None:intergenic | 30.0% |
| CTCTGCAAAAAATTGAAAGA+AGG | - | chr7_1:75959657-75959676 | Msa1038940:CDS | 30.0% | |
| !!! | GTTTATTTTACGTTATCCCA+TGG | - | chr7_1:75959691-75959710 | Msa1038940:CDS | 30.0% |
| AGATACGATGTTGAAGCAAT+AGG | - | chr7_1:75954858-75954877 | Msa1038940:three_prime_UTR | 35.0% | |
| !! | TGGACAAAGGTATTATTGTC+TGG | + | chr7_1:75954929-75954948 | None:intergenic | 35.0% |
| !!! | AGAAGGTTGTTGTTTTTGTG+AGG | + | chr7_1:75954972-75954991 | None:intergenic | 35.0% |
| TACAAGGTAAAGAGAGAAGA+AGG | + | chr7_1:75954989-75955008 | None:intergenic | 35.0% | |
| ! | TGATGATGATGAGACATTAG+AGG | + | chr7_1:75955029-75955048 | None:intergenic | 35.0% |
| !! | GTTTTGTTCATCGCCATTAA+TGG | + | chr7_1:75955078-75955097 | None:intergenic | 35.0% |
| TGATAATCATCAGCGAATAG+AGG | + | chr7_1:75955128-75955147 | None:intergenic | 35.0% | |
| TAGCTTATGATGCTCTTGTT+TGG | - | chr7_1:75955177-75955196 | Msa1038940:intron | 35.0% | |
| ! | AGCTTATGATGCTCTTGTTT+GGG | - | chr7_1:75955178-75955197 | Msa1038940:intron | 35.0% |
| ATTGTAAAACCAAACGGTGA+TGG | + | chr7_1:75955346-75955365 | None:intergenic | 35.0% | |
| TGGAATTAAGCATGCATGTT+TGG | - | chr7_1:75955475-75955494 | Msa1038940:intron | 35.0% | |
| CCATTCCTGATTTCTGTAAT+CGG | + | chr7_1:75955578-75955597 | None:intergenic | 35.0% | |
| ! | TACTTTCTGGAAATGACGTT+GGG | + | chr7_1:75955641-75955660 | None:intergenic | 35.0% |
| ! | TTACTTTCTGGAAATGACGT+TGG | + | chr7_1:75955642-75955661 | None:intergenic | 35.0% |
| CGTCATTTCCAGAAAGTAAA+TGG | - | chr7_1:75955643-75955662 | Msa1038940:CDS | 35.0% | |
| TTCTTCAAGAATCTCTCTCA+AGG | - | chr7_1:75955733-75955752 | Msa1038940:intron | 35.0% | |
| CCAAACCAAACAAACGAAAA+GGG | + | chr7_1:75955820-75955839 | None:intergenic | 35.0% | |
| ACCAAACCAAACAAACGAAA+AGG | + | chr7_1:75955821-75955840 | None:intergenic | 35.0% | |
| ! | GGTAGCTATATTGGTTAAAG+TGG | - | chr7_1:75956014-75956033 | Msa1038940:intron | 35.0% |
| CTCTATTTGCAAAAGGGATT+TGG | + | chr7_1:75956227-75956246 | None:intergenic | 35.0% | |
| GTTGAGCTCTATTTGCAAAA+GGG | + | chr7_1:75956233-75956252 | None:intergenic | 35.0% | |
| TGTTGAGCTCTATTTGCAAA+AGG | + | chr7_1:75956234-75956253 | None:intergenic | 35.0% | |
| GCAAAAGAGATGAAAAACAG+AGG | + | chr7_1:75956427-75956446 | None:intergenic | 35.0% | |
| TTGGGTCAGAAAAAATTCTG+AGG | + | chr7_1:75956464-75956483 | None:intergenic | 35.0% | |
| !! | GTTTCGGTTTGTGATTTTTC+AGG | - | chr7_1:75956486-75956505 | Msa1038940:intron | 35.0% |
| ATCATAATGATAGCCCTGTA+TGG | + | chr7_1:75956715-75956734 | None:intergenic | 35.0% | |
| CTACCAAATGTGATATCAGA+GGG | - | chr7_1:75956860-75956879 | Msa1038940:intron | 35.0% | |
| ATACCCTCTGATATCACATT+TGG | + | chr7_1:75956866-75956885 | None:intergenic | 35.0% | |
| AGTTGCAGTCATTTACTTCA+GGG | - | chr7_1:75957165-75957184 | Msa1038940:intron | 35.0% | |
| ! | GATTCTGAAGGATAATCAAC+TGG | + | chr7_1:75957202-75957221 | None:intergenic | 35.0% |
| TATCCTTCAGAATCAGTAAG+TGG | - | chr7_1:75957208-75957227 | Msa1038940:intron | 35.0% | |
| ATCATACCAGGTAATTCAGT+GGG | + | chr7_1:75957342-75957361 | None:intergenic | 35.0% | |
| CCAACAGAACAAAAATAAGG+TGG | + | chr7_1:75957421-75957440 | None:intergenic | 35.0% | |
| !!! | CCACCTTATTTTTGTTCTGT+TGG | - | chr7_1:75957418-75957437 | Msa1038940:CDS | 35.0% |
| !!! | AACTATTTTGAGGTCCAAAC+TGG | + | chr7_1:75957520-75957539 | None:intergenic | 35.0% |
| GCATAACTTACTCAATATGC+AGG | - | chr7_1:75957809-75957828 | Msa1038940:CDS | 35.0% | |
| ACTTACTCAATATGCAGGAA+TGG | - | chr7_1:75957814-75957833 | Msa1038940:CDS | 35.0% | |
| CCCTTCAATATCGTATCATT+TGG | - | chr7_1:75957878-75957897 | Msa1038940:CDS | 35.0% | |
| AAGTTCCTGTTGAATCTTCT+TGG | + | chr7_1:75957910-75957929 | None:intergenic | 35.0% | |
| AGAACATAAGATCCAGAAGA+AGG | + | chr7_1:75958095-75958114 | None:intergenic | 35.0% | |
| CAAATAAGTAAGGCATGGAT+TGG | + | chr7_1:75958118-75958137 | None:intergenic | 35.0% | |
| CCAATCAAATCATAAATGGC+TGG | + | chr7_1:75958163-75958182 | None:intergenic | 35.0% | |
| CCAGCCATTTATGATTTGAT+TGG | - | chr7_1:75958160-75958179 | Msa1038940:intron | 35.0% | |
| TCGTTAATAACTGAAACGGA+AGG | - | chr7_1:75958298-75958317 | Msa1038940:intron | 35.0% | |
| AATAACTGAAACGGAAGGTT+TGG | - | chr7_1:75958303-75958322 | Msa1038940:intron | 35.0% | |
| ATTCAAAACTCTTCCTAGAG+AGG | - | chr7_1:75958489-75958508 | Msa1038940:intron | 35.0% | |
| AAGTATGAGTGTAGTTCCAA+GGG | + | chr7_1:75958710-75958729 | None:intergenic | 35.0% | |
| ! | TTTCTTAGATGAAAGTGCGA+GGG | + | chr7_1:75958808-75958827 | None:intergenic | 35.0% |
| !! | TTTTCTTAGATGAAAGTGCG+AGG | + | chr7_1:75958809-75958828 | None:intergenic | 35.0% |
| !!! | TTGACCATAGTTTGCTTTTC+TGG | - | chr7_1:75958856-75958875 | Msa1038940:intron | 35.0% |
| TTGACCAGAAAAGCAAACTA+TGG | + | chr7_1:75958863-75958882 | None:intergenic | 35.0% | |
| !!! | CTGCTTACAGTTTTGATTCA+AGG | + | chr7_1:75958901-75958920 | None:intergenic | 35.0% |
| CTTGAATCAAAACTGTAAGC+AGG | - | chr7_1:75958899-75958918 | Msa1038940:CDS | 35.0% | |
| !!! | CGATATCGTCTTTGTTTTCA+AGG | + | chr7_1:75958927-75958946 | None:intergenic | 35.0% |
| ATATTTATGGTGAAGCAGTG+CGG | - | chr7_1:75959155-75959174 | Msa1038940:intron | 35.0% | |
| ! | CCGTTTTCTGCAATTTTATG+AGG | + | chr7_1:75959186-75959205 | None:intergenic | 35.0% |
| !! | AAAACTGCAGCAGAAGTATT+TGG | + | chr7_1:75959253-75959272 | None:intergenic | 35.0% |
| ! | TTTTGATGCGTAATGGTTGT+TGG | - | chr7_1:75959269-75959288 | Msa1038940:intron | 35.0% |
| !! | AAATATCCCAAGTTCTGAGA+CGG | + | chr7_1:75959308-75959327 | None:intergenic | 35.0% |
| GACTTGAATTTGCAGGAATA+AGG | - | chr7_1:75959429-75959448 | Msa1038940:CDS | 35.0% | |
| GAATTTGCAGGAATAAGGAT+AGG | - | chr7_1:75959434-75959453 | Msa1038940:CDS | 35.0% | |
| GTTGTCGTGAATAATCAAAG+TGG | - | chr7_1:75959457-75959476 | Msa1038940:CDS | 35.0% | |
| AGAGGCAGACAAATATAAAC+AGG | + | chr7_1:75959641-75959660 | None:intergenic | 35.0% | |
| GCAAAAAATTGAAAGAAGGG+AGG | - | chr7_1:75959661-75959680 | Msa1038940:CDS | 35.0% | |
| GTAACTATACAACACACCAT+GGG | + | chr7_1:75959710-75959729 | None:intergenic | 35.0% | |
| TGTAACTATACAACACACCA+TGG | + | chr7_1:75959711-75959730 | None:intergenic | 35.0% | |
| GGAGGAATGTATTTGGACAA+AGG | + | chr7_1:75954942-75954961 | None:intergenic | 40.0% | |
| AGGAGAAGGAGGAATGTATT+TGG | + | chr7_1:75954949-75954968 | None:intergenic | 40.0% | |
| !!! | TTGTTTTTGTGAGGAGGAGA+AGG | + | chr7_1:75954963-75954982 | None:intergenic | 40.0% |
| !!! | AGGTTGTTGTTTTTGTGAGG+AGG | + | chr7_1:75954969-75954988 | None:intergenic | 40.0% |
| TTCATCGCCATTAATGGTGA+TGG | + | chr7_1:75955072-75955091 | None:intergenic | 40.0% | |
| TAATCATCAGCGAATAGAGG+AGG | + | chr7_1:75955125-75955144 | None:intergenic | 40.0% | |
| GGTAAGATTTATCTCCCATG+AGG | + | chr7_1:75955220-75955239 | None:intergenic | 40.0% | |
| CATGGGAGATAAATCTTACC+AGG | - | chr7_1:75955220-75955239 | Msa1038940:intron | 40.0% | |
| CCACGGATAGAATAGAAACA+TGG | + | chr7_1:75955438-75955457 | None:intergenic | 40.0% | |
| ! | CCATGTTTCTATTCTATCCG+TGG | - | chr7_1:75955435-75955454 | Msa1038940:CDS | 40.0% |
| AACTGTTGCAAAACTCACCA+CGG | + | chr7_1:75955455-75955474 | None:intergenic | 40.0% | |
| ! | TGGTGAGTTTTGCAACAGTT+TGG | - | chr7_1:75955455-75955474 | Msa1038940:intron | 40.0% |
| CCGATTACAGAAATCAGGAA+TGG | - | chr7_1:75955575-75955594 | Msa1038940:CDS | 40.0% | |
| ACGTTGGGAATAATGCAAAC+GGG | + | chr7_1:75955626-75955645 | None:intergenic | 40.0% | |
| GACGTTGGGAATAATGCAAA+CGG | + | chr7_1:75955627-75955646 | None:intergenic | 40.0% | |
| GCTTGCTTCCATTTACTTTC+TGG | + | chr7_1:75955654-75955673 | None:intergenic | 40.0% | |
| ATGGAAGCAAGCTTCTGATT+TGG | - | chr7_1:75955662-75955681 | Msa1038940:CDS | 40.0% | |
| ! | GTTGACCGTGTTAGTTTAGA+TGG | - | chr7_1:75955705-75955724 | Msa1038940:intron | 40.0% |
| ! | CCCTTTTCGTTTGTTTGGTT+TGG | - | chr7_1:75955817-75955836 | Msa1038940:intron | 40.0% |
| TCAATCCAGAACTAAGCAAG+TGG | - | chr7_1:75955926-75955945 | Msa1038940:intron | 40.0% | |
| TTTGTTGAGCTGTAGCATCT+TGG | + | chr7_1:75955985-75956004 | None:intergenic | 40.0% | |
| GCTACAGCTCAACAAAAAAG+AGG | - | chr7_1:75955989-75956008 | Msa1038940:intron | 40.0% | |
| CAGCTCAACAAAAAAGAGGT+CGG | - | chr7_1:75955993-75956012 | Msa1038940:intron | 40.0% | |
| AAAGAGGTCGGTAGCTATAT+TGG | - | chr7_1:75956005-75956024 | Msa1038940:intron | 40.0% | |
| CTCTTGTCACTCAACTTCAT+AGG | - | chr7_1:75956284-75956303 | Msa1038940:intron | 40.0% | |
| TCTTGCCATGGAAAATTGCT+TGG | - | chr7_1:75956518-75956537 | Msa1038940:intron | 40.0% | |
| ! | ATTCTGGCTGACAGCATTAT+TGG | + | chr7_1:75956567-75956586 | None:intergenic | 40.0% |
| ! | TTGTTTCTCGGATCTAACCT+GGG | + | chr7_1:75956629-75956648 | None:intergenic | 40.0% |
| ! | TTTGTTTCTCGGATCTAACC+TGG | + | chr7_1:75956630-75956649 | None:intergenic | 40.0% |
| CAGGGCTATCATTATGATTG+TGG | - | chr7_1:75956717-75956736 | Msa1038940:CDS | 40.0% | |
| GAACAGCAGAAAGAAAATGC+TGG | + | chr7_1:75956771-75956790 | None:intergenic | 40.0% | |
| GCTACCAAATGTGATATCAG+AGG | - | chr7_1:75956859-75956878 | Msa1038940:intron | 40.0% | |
| CTGGTAGAATTTCTCCTTCT+TGG | + | chr7_1:75957019-75957038 | None:intergenic | 40.0% | |
| GAAGGAGAAATTCTACCAGA+TGG | - | chr7_1:75957020-75957039 | Msa1038940:intron | 40.0% | |
| !! | TACACAGAAAGTGTTCCATC+TGG | + | chr7_1:75957038-75957057 | None:intergenic | 40.0% |
| GGAACACTTTCTGTGTATGT+AGG | - | chr7_1:75957041-75957060 | Msa1038940:intron | 40.0% | |
| CAGTTGCAGTCATTTACTTC+AGG | - | chr7_1:75957164-75957183 | Msa1038940:intron | 40.0% | |
| ! | ATTGCGCTTTTACATCGTAG+AGG | - | chr7_1:75957262-75957281 | Msa1038940:intron | 40.0% |
| GATCATACCAGGTAATTCAG+TGG | + | chr7_1:75957343-75957362 | None:intergenic | 40.0% | |
| TTGGTCACAAAGATCATACC+AGG | + | chr7_1:75957354-75957373 | None:intergenic | 40.0% | |
| ! | ACAGCAGTCAGTTCTTCTTT+TGG | + | chr7_1:75957373-75957392 | None:intergenic | 40.0% |
| GAACTCGTTGTCAGGATAAA+AGG | + | chr7_1:75957771-75957790 | None:intergenic | 40.0% | |
| AGTTCTCATTGCTCATGCTT+TGG | - | chr7_1:75957786-75957805 | Msa1038940:intron | 40.0% | |
| GTTCTCATTGCTCATGCTTT+GGG | - | chr7_1:75957787-75957806 | Msa1038940:intron | 40.0% | |
| ! | GAGGGCTTTGATAAAAACGT+AGG | - | chr7_1:75958332-75958351 | Msa1038940:CDS | 40.0% |
| ! | GGCTTTGATAAAAACGTAGG+TGG | - | chr7_1:75958335-75958354 | Msa1038940:CDS | 40.0% |
| AGTTCAACTCAATCCTCTCT+AGG | + | chr7_1:75958505-75958524 | None:intergenic | 40.0% | |
| GTACAAGAAAAGGGGATAAC+CGG | + | chr7_1:75958586-75958605 | None:intergenic | 40.0% | |
| GAAGTATGAGTGTAGTTCCA+AGG | + | chr7_1:75958711-75958730 | None:intergenic | 40.0% | |
| AAAATGCGTGAATGCTTTGC+AGG | - | chr7_1:75958949-75958968 | Msa1038940:CDS | 40.0% | |
| TATTTATGGTGAAGCAGTGC+GGG | - | chr7_1:75959156-75959175 | Msa1038940:intron | 40.0% | |
| CAGCTTACATACTTATGCAG+AGG | - | chr7_1:75959221-75959240 | Msa1038940:intron | 40.0% | |
| GTCTCAGAACTTGGGATATT+TGG | - | chr7_1:75959307-75959326 | Msa1038940:intron | 40.0% | |
| TGTAATGCTTAACATCCGCT+GGG | - | chr7_1:75959407-75959426 | Msa1038940:CDS | 40.0% | |
| ATATCATCATCTGACGAAGG+TGG | - | chr7_1:75959499-75959518 | Msa1038940:CDS | 40.0% | |
| TATCATCATCTGACGAAGGT+GGG | - | chr7_1:75959500-75959519 | Msa1038940:CDS | 40.0% | |
| ! | AGAGCACCTCTTAACTTATC+TGG | - | chr7_1:75959571-75959590 | Msa1038940:CDS | 40.0% |
| GAGCACCTCTTAACTTATCT+GGG | - | chr7_1:75959572-75959591 | Msa1038940:CDS | 40.0% | |
| CAGGAGGCTCAAATGATAAT+GGG | + | chr7_1:75959622-75959641 | None:intergenic | 40.0% | |
| ACAGGAGGCTCAAATGATAA+TGG | + | chr7_1:75959623-75959642 | None:intergenic | 40.0% | |
| GGCAGACAAATATAAACAGG+AGG | + | chr7_1:75959638-75959657 | None:intergenic | 40.0% | |
| CGATGTTGAAGCAATAGGCA+TGG | - | chr7_1:75954863-75954882 | Msa1038940:three_prime_UTR | 45.0% | |
| ! | TTTTTGTGAGGAGGAGAAGG+AGG | + | chr7_1:75954960-75954979 | None:intergenic | 45.0% |
| ACACCTGCCATCACCATTAA+TGG | - | chr7_1:75955062-75955081 | Msa1038940:CDS | 45.0% | |
| AGAAGAAGGAGAAGAAGACC+TGG | + | chr7_1:75955241-75955260 | None:intergenic | 45.0% | |
| CAGAAATCAGGAATGGTTCC+TGG | - | chr7_1:75955582-75955601 | Msa1038940:CDS | 45.0% | |
| CGTTGGGAATAATGCAAACG+GGG | + | chr7_1:75955625-75955644 | None:intergenic | 45.0% | |
| ! | GGTCACCCTTTTCGTTTGTT+TGG | - | chr7_1:75955812-75955831 | Msa1038940:intron | 45.0% |
| TTCGTCCACTTGCTTAGTTC+TGG | + | chr7_1:75955934-75955953 | None:intergenic | 45.0% | |
| AGGTGCATACTTTCTTGCCA+TGG | - | chr7_1:75956506-75956525 | Msa1038940:intron | 45.0% | |
| ! | CCAGACCAAGCAATTTTCCA+TGG | + | chr7_1:75956526-75956545 | None:intergenic | 45.0% |
| CCATGGAAAATTGCTTGGTC+TGG | - | chr7_1:75956523-75956542 | Msa1038940:intron | 45.0% | |
| GCTTGGTCTGGATTCAGAAA+AGG | - | chr7_1:75956535-75956554 | Msa1038940:intron | 45.0% | |
| GGAGTGAGTATAATAACCCC+AGG | - | chr7_1:75956609-75956628 | Msa1038940:intron | 45.0% | |
| TGTTTCTCGGATCTAACCTG+GGG | + | chr7_1:75956628-75956647 | None:intergenic | 45.0% | |
| !! | TCCTTAGCTTTGAACACGCA+TGG | - | chr7_1:75956957-75956976 | Msa1038940:intron | 45.0% |
| ACCATGCGTGTTCAAAGCTA+AGG | + | chr7_1:75956961-75956980 | None:intergenic | 45.0% | |
| ATGCCAGAAGTTGACCAAGA+AGG | - | chr7_1:75957002-75957021 | Msa1038940:intron | 45.0% | |
| TCTCCTTCTTGGTCAACTTC+TGG | + | chr7_1:75957008-75957027 | None:intergenic | 45.0% | |
| !! | TGGCCACTTACTGATTCTGA+AGG | + | chr7_1:75957214-75957233 | None:intergenic | 45.0% |
| GGTTAACCCACTGAATTACC+TGG | - | chr7_1:75957333-75957352 | Msa1038940:intron | 45.0% | |
| AGCAATGAGAACTCGTTGTC+AGG | + | chr7_1:75957779-75957798 | None:intergenic | 45.0% | |
| ATATGCAGGAATGGAGAGCT+AGG | - | chr7_1:75957823-75957842 | Msa1038940:CDS | 45.0% | |
| TGGCACCAAGAAGATTCAAC+AGG | - | chr7_1:75957902-75957921 | Msa1038940:intron | 45.0% | |
| AGATACCTCTCAAGAACACC+TGG | + | chr7_1:75957939-75957958 | None:intergenic | 45.0% | |
| ! | CAAGCAGAAAAGCATAGGGT+CGG | + | chr7_1:75958257-75958276 | None:intergenic | 45.0% |
| ! | TGGCCAAGCAGAAAAGCATA+GGG | + | chr7_1:75958261-75958280 | None:intergenic | 45.0% |
| ! | ACGGAAGGTTTGGAATAGTG+AGG | - | chr7_1:75958313-75958332 | Msa1038940:intron | 45.0% |
| ! | CGGAAGGTTTGGAATAGTGA+GGG | - | chr7_1:75958314-75958333 | Msa1038940:intron | 45.0% |
| ACTGTGGAGTTTGGATGACT+CGG | - | chr7_1:75958972-75958991 | Msa1038940:CDS | 45.0% | |
| !! | GCTGCAGTTTTGATGCGTAA+TGG | - | chr7_1:75959262-75959281 | Msa1038940:intron | 45.0% |
| GTGTAATGCTTAACATCCGC+TGG | - | chr7_1:75959406-75959425 | Msa1038940:CDS | 45.0% | |
| ATCATCATCTGACGAAGGTG+GGG | - | chr7_1:75959501-75959520 | Msa1038940:CDS | 45.0% | |
| ! | GCTGCTTCTGCTTCTGCTTT+TGG | - | chr7_1:75954891-75954910 | Msa1038940:three_prime_UTR | 50.0% |
| !! | TCGCCATTAATGGTGATGGC+AGG | + | chr7_1:75955068-75955087 | None:intergenic | 50.0% |
| TCATCAGCGAATAGAGGAGG+AGG | + | chr7_1:75955122-75955141 | None:intergenic | 50.0% | |
| CTTGTTTGGGCCTCTCTTCA+CGG | - | chr7_1:75955191-75955210 | Msa1038940:intron | 50.0% | |
| TCTCTTCACGGTCTCCTCAT+GGG | - | chr7_1:75955203-75955222 | Msa1038940:intron | 50.0% | |
| !! | CCAAACGGTGATGGAGACAT+GGG | + | chr7_1:75955337-75955356 | None:intergenic | 50.0% |
| !! | ACCAAACGGTGATGGAGACA+TGG | + | chr7_1:75955338-75955357 | None:intergenic | 50.0% |
| ATCAGGAATGGTTCCTGGTG+TGG | - | chr7_1:75955587-75955606 | Msa1038940:CDS | 50.0% | |
| TCAGGAATGGTTCCTGGTGT+GGG | - | chr7_1:75955588-75955607 | Msa1038940:CDS | 50.0% | |
| TGGCTGACAGCATTATTGGC+AGG | + | chr7_1:75956563-75956582 | None:intergenic | 50.0% | |
| ! | CTCACTCCAAGCTTTAGCCA+AGG | + | chr7_1:75956597-75956616 | None:intergenic | 50.0% |
| GCAGTCATTTACTTCAGGGC+TGG | - | chr7_1:75957169-75957188 | Msa1038940:intron | 50.0% | |
| ! | GTTGATTGGTCGGTACAGCT+TGG | - | chr7_1:75957563-75957582 | Msa1038940:intron | 50.0% |
| ATGGAGAGCTAGGCTACTGA+TGG | - | chr7_1:75957833-75957852 | Msa1038940:CDS | 50.0% | |
| CAACAGGAACTTGCAAAGCC+AGG | - | chr7_1:75957918-75957937 | Msa1038940:intron | 50.0% | |
| CAAAGCCAGGTGTTCTTGAG+AGG | - | chr7_1:75957931-75957950 | Msa1038940:intron | 50.0% | |
| GAAGTGAGATCGCCTTCTTC+TGG | - | chr7_1:75958080-75958099 | Msa1038940:CDS | 50.0% | |
| ! | CGACCCTATGCTTTTCTGCT+TGG | - | chr7_1:75958255-75958274 | Msa1038940:intron | 50.0% |
| ! | CTGGCCAAGCAGAAAAGCAT+AGG | + | chr7_1:75958262-75958281 | None:intergenic | 50.0% |
| ! | CTTTTCTGCTTGGCCAGTAG+TGG | - | chr7_1:75958265-75958284 | Msa1038940:intron | 50.0% |
| CGATGCATTCTTGCCACTAC+TGG | + | chr7_1:75958281-75958300 | None:intergenic | 50.0% | |
| GTGAATGCTTTGCAGGACTG+TGG | - | chr7_1:75958956-75958975 | Msa1038940:CDS | 50.0% | |
| CTTTGCAGGACTGTGGAGTT+TGG | - | chr7_1:75958963-75958982 | Msa1038940:CDS | 50.0% | |
| GTAATGAAGCCCCAGAGAGA+AGG | - | chr7_1:75959033-75959052 | Msa1038940:intron | 50.0% | |
| AGTACCTCCTCCTTCTCTCT+GGG | + | chr7_1:75959046-75959065 | None:intergenic | 50.0% | |
| TAGTACCTCCTCCTTCTCTC+TGG | + | chr7_1:75959047-75959066 | None:intergenic | 50.0% | |
| GCGTAATGGTTGTTGGCACA+AGG | - | chr7_1:75959276-75959295 | Msa1038940:intron | 50.0% | |
| CCTGCAAATTCAAGTCCCAG+CGG | + | chr7_1:75959425-75959444 | None:intergenic | 50.0% | |
| ! | GAGGTGCTCTACATCAAGTG+AGG | + | chr7_1:75959561-75959580 | None:intergenic | 50.0% |
| TCAGCGAATAGAGGAGGAGG+AGG | + | chr7_1:75955119-75955138 | None:intergenic | 55.0% | |
| CATGAGGAGACCGTGAAGAG+AGG | + | chr7_1:75955204-75955223 | None:intergenic | 55.0% | |
| CTCTCTTCACGGTCTCCTCA+TGG | - | chr7_1:75955202-75955221 | Msa1038940:intron | 55.0% | |
| CCCATGTCTCCATCACCGTT+TGG | - | chr7_1:75955334-75955353 | Msa1038940:CDS | 55.0% | |
| GCATGCATCAATCCCACACC+AGG | + | chr7_1:75955603-75955622 | None:intergenic | 55.0% | |
| ! | CCAAGCTTTAGCCAAGGCCT+CGG | + | chr7_1:75956591-75956610 | None:intergenic | 55.0% |
| ATGAAGCCCCAGAGAGAAGG+AGG | - | chr7_1:75959036-75959055 | Msa1038940:intron | 55.0% | |
| GTACCTCCTCCTTCTCTCTG+GGG | + | chr7_1:75959045-75959064 | None:intergenic | 55.0% | |
| ACCACGCCGTCTCAGAACTT+GGG | - | chr7_1:75959299-75959318 | Msa1038940:intron | 55.0% | |
| CCGCTGGGACTTGAATTTGC+AGG | - | chr7_1:75959422-75959441 | Msa1038940:CDS | 55.0% | |
| AGAGGAGGAGGAGGAGGAGA+AGG | + | chr7_1:75955110-75955129 | None:intergenic | 60.0% | |
| GCGAATAGAGGAGGAGGAGG+AGG | + | chr7_1:75955116-75955135 | None:intergenic | 60.0% | |
| TGCTGTCAGCCAGAATGCCG+AGG | - | chr7_1:75956571-75956590 | Msa1038940:intron | 60.0% | |
| TAGCCAAGGCCTCGGCATTC+TGG | + | chr7_1:75956583-75956602 | None:intergenic | 60.0% | |
| CCGAGGCCTTGGCTAAAGCT+TGG | - | chr7_1:75956588-75956607 | Msa1038940:intron | 60.0% | |
| AAGCCCCAGAGAGAAGGAGG+AGG | - | chr7_1:75959039-75959058 | Msa1038940:intron | 60.0% | |
| GACCACGCCGTCTCAGAACT+TGG | - | chr7_1:75959298-75959317 | Msa1038940:intron | 60.0% | |
| !! | TCCCAAGTTCTGAGACGGCG+TGG | + | chr7_1:75959303-75959322 | None:intergenic | 60.0% |
| CAGCCAGAATGCCGAGGCCT+TGG | - | chr7_1:75956577-75956596 | Msa1038940:intron | 65.0% | |
| GACGAAGGTGGGGTTGCAGC+TGG | - | chr7_1:75959511-75959530 | Msa1038940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 75954838 | 75959784 | 75954838 | ID=Msa1038940;Name=Msa1038940 |
| chr7_1 | mRNA | 75954838 | 75959784 | 75954838 | ID=Msa1038940-mRNA-1;Parent=Msa1038940;Name=Msa1038940-mRNA-1;_AED=0.09;_eAED=0.09;_QI=44|0.90|0.83|1|0.90|0.83|12|217|575 |
| chr7_1 | exon | 75954838 | 75955178 | 75954838 | ID=Msa1038940-mRNA-1:exon:19602;Parent=Msa1038940-mRNA-1 |
| chr7_1 | exon | 75955281 | 75955473 | 75955281 | ID=Msa1038940-mRNA-1:exon:19601;Parent=Msa1038940-mRNA-1 |
| chr7_1 | exon | 75955562 | 75955701 | 75955562 | ID=Msa1038940-mRNA-1:exon:19600;Parent=Msa1038940-mRNA-1 |
| chr7_1 | exon | 75956670 | 75956791 | 75956670 | ID=Msa1038940-mRNA-1:exon:19599;Parent=Msa1038940-mRNA-1 |
| chr7_1 | exon | 75957400 | 75957469 | 75957400 | ID=Msa1038940-mRNA-1:exon:19598;Parent=Msa1038940-mRNA-1 |
| chr7_1 | exon | 75957568 | 75957671 | 75957568 | ID=Msa1038940-mRNA-1:exon:19597;Parent=Msa1038940-mRNA-1 |
| chr7_1 | exon | 75957788 | 75957902 | 75957788 | ID=Msa1038940-mRNA-1:exon:19596;Parent=Msa1038940-mRNA-1 |
| chr7_1 | exon | 75957992 | 75958114 | 75957992 | ID=Msa1038940-mRNA-1:exon:19595;Parent=Msa1038940-mRNA-1 |
| chr7_1 | exon | 75958317 | 75958447 | 75958317 | ID=Msa1038940-mRNA-1:exon:19594;Parent=Msa1038940-mRNA-1 |
| chr7_1 | exon | 75958612 | 75958687 | 75958612 | ID=Msa1038940-mRNA-1:exon:19593;Parent=Msa1038940-mRNA-1 |
| chr7_1 | exon | 75958868 | 75959037 | 75958868 | ID=Msa1038940-mRNA-1:exon:19592;Parent=Msa1038940-mRNA-1 |
| chr7_1 | exon | 75959381 | 75959784 | 75959381 | ID=Msa1038940-mRNA-1:exon:19591;Parent=Msa1038940-mRNA-1 |
| chr7_1 | five_prime_UTR | 75959741 | 75959784 | 75959741 | ID=Msa1038940-mRNA-1:five_prime_utr;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75959381 | 75959740 | 75959381 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75958868 | 75959037 | 75958868 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75958612 | 75958687 | 75958612 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75958317 | 75958447 | 75958317 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75957992 | 75958114 | 75957992 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75957788 | 75957902 | 75957788 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75957568 | 75957671 | 75957568 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75957400 | 75957469 | 75957400 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75956670 | 75956791 | 75956670 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75955562 | 75955701 | 75955562 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75955281 | 75955473 | 75955281 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | CDS | 75955055 | 75955178 | 75955055 | ID=Msa1038940-mRNA-1:cds;Parent=Msa1038940-mRNA-1 |
| chr7_1 | three_prime_UTR | 75954838 | 75955054 | 75954838 | ID=Msa1038940-mRNA-1:three_prime_utr;Parent=Msa1038940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
