Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171720 | XP_003601269.1 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171720 | sp|Q9ZUD9|SRO2_ARATH | 38.214 | 280 | 160 | 3 | 47 | 314 | 45 | 323 | 9.66e-63 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171720 | G7J5G4 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021400 | Msa1171720 | 0.816582 | 5.135345e-52 | -8.615850e-47 |
| Msa0029700 | Msa1171720 | 0.803920 | 2.768321e-49 | -8.615850e-47 |
| Msa0064960 | Msa1171720 | 0.843326 | 1.501132e-58 | -8.615850e-47 |
| Msa0080020 | Msa1171720 | 0.804481 | 2.115987e-49 | -8.615850e-47 |
| Msa0110240 | Msa1171720 | 0.807496 | 4.914404e-50 | -8.615850e-47 |
| Msa0777210 | Msa1171720 | 0.803327 | 3.674949e-49 | -8.615850e-47 |
| Msa0814350 | Msa1171720 | 0.816328 | 5.851875e-52 | -8.615850e-47 |
| Msa0238140 | Msa1171720 | 0.804064 | 2.584645e-49 | -8.615850e-47 |
| Msa0427850 | Msa1171720 | 0.812939 | 3.294028e-51 | -8.615850e-47 |
| Msa0434140 | Msa1171720 | 0.805469 | 1.315168e-49 | -8.615850e-47 |
| Msa0465420 | Msa1171720 | 0.982507 | 2.867393e-155 | -8.615850e-47 |
| Msa0474080 | Msa1171720 | 0.803820 | 2.905071e-49 | -8.615850e-47 |
| Msa1026970 | Msa1171720 | 0.818844 | 1.585503e-52 | -8.615850e-47 |
| Msa1154310 | Msa1171720 | 0.826880 | 2.128188e-54 | -8.615850e-47 |
| Msa1171720 | Msa1258600 | 0.809121 | 2.212428e-50 | -8.615850e-47 |
| Msa1171720 | Msa1298440 | 0.814089 | 1.839782e-51 | -8.615850e-47 |
| Msa1171720 | Msa1321840 | 0.802792 | 4.742960e-49 | -8.615850e-47 |
| Msa1171720 | Msa1400940 | 0.809305 | 2.020422e-50 | -8.615850e-47 |
| Msa1171720 | Msa1402000 | 0.800054 | 1.725530e-48 | -8.615850e-47 |
| Msa0511280 | Msa1171720 | 0.970813 | 3.438897e-132 | -8.615850e-47 |
| Msa0511380 | Msa1171720 | 0.926419 | 4.809730e-91 | -8.615850e-47 |
| Msa0878410 | Msa1171720 | 0.831929 | 1.263263e-55 | -8.615850e-47 |
| Msa0947420 | Msa1171720 | 0.817350 | 3.451982e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171720 | MtrunA17_Chr3g0117631 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Msa1171720 | MtrunA17_Chr4g0059061 | 49.363 | 314 | 143 | 5 | 9 | 318 | 11 | 312 | 7.23e-102 | 302 |
| Msa1171720 | MtrunA17_Chr8g0380321 | 35.507 | 276 | 166 | 4 | 39 | 303 | 5 | 279 | 1.77e-53 | 177 |
| Msa1171720 | MtrunA17_Chr1g0210871 | 28.402 | 338 | 193 | 6 | 6 | 299 | 223 | 555 | 7.73e-39 | 144 |
| Msa1171720 | MtrunA17_Chr5g0412301 | 29.969 | 327 | 173 | 8 | 20 | 300 | 233 | 549 | 1.77e-36 | 137 |
| Msa1171720 | MtrunA17_Chr5g0410781 | 32.258 | 186 | 112 | 6 | 58 | 234 | 64 | 244 | 1.69e-27 | 107 |
| Msa1171720 | MtrunA17_Chr7g0217951 | 33.333 | 174 | 103 | 5 | 64 | 228 | 257 | 426 | 2.23e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171720 | AT1G23550.1 | 38.214 | 280 | 160 | 3 | 47 | 314 | 45 | 323 | 9.82e-64 | 204 |
| Msa1171720 | AT3G47720.1 | 36.893 | 309 | 171 | 8 | 10 | 304 | 8 | 306 | 1.63e-56 | 186 |
| Msa1171720 | AT5G62520.1 | 40.672 | 268 | 141 | 8 | 47 | 304 | 42 | 301 | 1.35e-54 | 181 |
| Msa1171720 | AT1G70440.2 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.84e-47 | 162 |
| Msa1171720 | AT1G70440.1 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.84e-47 | 162 |
| Msa1171720 | AT1G32230.6 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa1171720 | AT1G32230.4 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa1171720 | AT1G32230.2 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa1171720 | AT1G32230.5 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa1171720 | AT1G32230.1 | 31.457 | 302 | 155 | 7 | 58 | 312 | 276 | 572 | 2.92e-40 | 149 |
| Msa1171720 | AT1G32230.3 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 7.58e-40 | 147 |
| Msa1171720 | AT5G62520.2 | 40.104 | 192 | 100 | 7 | 47 | 228 | 42 | 228 | 2.09e-37 | 134 |
| Msa1171720 | AT2G35510.1 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.10e-31 | 124 |
| Msa1171720 | AT2G35510.3 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.10e-31 | 124 |
| Msa1171720 | AT2G35510.2 | 32.642 | 193 | 111 | 4 | 48 | 230 | 262 | 445 | 1.73e-25 | 106 |
Find 69 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATACTGTGCAGGGTTATTT+TGG | 0.115015 | 8_1:+1644580 | Msa1171720:CDS |
| AGTTGTGCCGATTATGATTC+TGG | 0.194351 | 8_1:+1644647 | Msa1171720:CDS |
| CGAATCTCCACCGCGAAGTT+TGG | 0.267880 | 8_1:-1643567 | None:intergenic |
| TTCTCCTAACCTAACTAAAA+AGG | 0.275442 | 8_1:-1643387 | None:intergenic |
| CTTTGTAGAACTTGCAAATC+AGG | 0.284073 | 8_1:-1644985 | None:intergenic |
| CTCCAACTAAGTACATGATT+TGG | 0.368420 | 8_1:+1644687 | Msa1171720:CDS |
| CTAAAGACGAGGTTTCTTCA+TGG | 0.400145 | 8_1:+1643431 | Msa1171720:CDS |
| GACGAGGTTTCTTCATGGCT+TGG | 0.402614 | 8_1:+1643436 | Msa1171720:CDS |
| ACGAGGTTTCTTCATGGCTT+GGG | 0.407523 | 8_1:+1643437 | Msa1171720:CDS |
| TTCTTCGCCGGTGGTGGTGG+CGG | 0.412701 | 8_1:-1643336 | None:intergenic |
| CAAGTTCTACAAAGCTAGAA+AGG | 0.426903 | 8_1:+1644994 | Msa1171720:CDS |
| GTAGAATGAATACTCATGTT+TGG | 0.434386 | 8_1:+1644714 | Msa1171720:CDS |
| ACTGGTGAGAATGACGTTAG+AGG | 0.440885 | 8_1:+1643617 | Msa1171720:CDS |
| CATCATGATCCCATTCCTCT+TGG | 0.443393 | 8_1:-1643262 | None:intergenic |
| GTTGTGCCGATTATGATTCT+GGG | 0.444710 | 8_1:+1644648 | Msa1171720:CDS |
| CTTTGAAGAGGAGAATCATC+TGG | 0.446663 | 8_1:-1643692 | None:intergenic |
| TTCAAGGTTTCTTCTTTGAA+AGG | 0.449498 | 8_1:+1644755 | Msa1171720:CDS |
| CTCCAAATCATGTACTTAGT+TGG | 0.452958 | 8_1:-1644689 | None:intergenic |
| TTGTTCTTCGCCGGTGGTGG+TGG | 0.454132 | 8_1:-1643339 | None:intergenic |
| ATCAAGTTGTGGCGAAACCT+TGG | 0.465639 | 8_1:-1644957 | None:intergenic |
| TGAGGCATTTGATACTGTGC+AGG | 0.465779 | 8_1:+1644570 | Msa1171720:CDS |
| GGAGGAGTCTTCACCGATGC+TGG | 0.466913 | 8_1:-1643285 | None:intergenic |
| TTTGCAGCGGTTGAGATTGA+AGG | 0.470522 | 8_1:+1644878 | Msa1171720:intron |
| ATCAACCCCAGAATCATAAT+CGG | 0.471467 | 8_1:-1644654 | None:intergenic |
| TATGGAATTCCAAGAGGAAT+GGG | 0.475448 | 8_1:+1643253 | None:intergenic |
| ATAGAAATCAAAGTCGGAAA+AGG | 0.484157 | 8_1:-1644929 | None:intergenic |
| TGCGAGACCAACTTCACCTT+CGG | 0.491538 | 8_1:+1644904 | Msa1171720:CDS |
| ACCGCTTTCGCAGTCGGAAA+CGG | 0.496051 | 8_1:-1643309 | None:intergenic |
| TTTGATTTCTATGCTTTCCA+AGG | 0.497741 | 8_1:+1644940 | Msa1171720:CDS |
| GAATCATAATCGGCACAACT+TGG | 0.501035 | 8_1:-1644644 | None:intergenic |
| TATGCTTGGTATGGAGCTAC+TGG | 0.501397 | 8_1:+1643599 | Msa1171720:CDS |
| TTCGCAGTCGGAAACGGTGG+AGG | 0.502683 | 8_1:-1643303 | None:intergenic |
| TCGAAGCCGCGCCTGTGAAA+CGG | 0.510220 | 8_1:-1643516 | None:intergenic |
| TTGAAGCTTAAAACATATGC+AGG | 0.515889 | 8_1:-1644737 | None:intergenic |
| CAGCAAGCAAGGTCAAAGAA+TGG | 0.519355 | 8_1:+1646191 | Msa1171720:CDS |
| TAAAGAACTAACCTTTGAAG+AGG | 0.520559 | 8_1:-1643704 | None:intergenic |
| TTTGTAGAACTTGCAAATCA+GGG | 0.522828 | 8_1:-1644984 | None:intergenic |
| GTGTTCTGACGCCGTTTCAC+AGG | 0.529220 | 8_1:+1643505 | Msa1171720:CDS |
| AACGGTTTCAGTCATGTCCA+TGG | 0.529234 | 8_1:+1643650 | Msa1171720:CDS |
| GAAGAAACCTCGTCTTTAGT+AGG | 0.529434 | 8_1:-1643427 | None:intergenic |
| TCGTTGTTCTTCGCCGGTGG+TGG | 0.529479 | 8_1:-1643342 | None:intergenic |
| AGTTGTGCTGTTGGCAGAGA+TGG | 0.530261 | 8_1:+1644545 | Msa1171720:CDS |
| CTATGGAATTCCAAGAGGAA+TGG | 0.530385 | 8_1:+1643252 | None:intergenic |
| ACCGTTTCCGACTGCGAAAG+CGG | 0.530594 | 8_1:+1643308 | Msa1171720:CDS |
| GGTGTTTCCGCCACCACCAC+CGG | 0.531519 | 8_1:+1643329 | Msa1171720:CDS |
| GTTAGAGGCATTCTATCAAA+CGG | 0.543708 | 8_1:+1643632 | Msa1171720:CDS |
| ATTCGAATGTGAAATATGCT+TGG | 0.547805 | 8_1:+1643585 | Msa1171720:CDS |
| CAGATGATTCTCCTCTTCAA+AGG | 0.551412 | 8_1:+1643693 | Msa1171720:CDS |
| AATGTGAAATATGCTTGGTA+TGG | 0.558383 | 8_1:+1643590 | Msa1171720:CDS |
| TCGTTGTCGTTGTTCTTCGC+CGG | 0.558549 | 8_1:-1643348 | None:intergenic |
| GGAAACACCGCTTTCGCAGT+CGG | 0.561570 | 8_1:-1643315 | None:intergenic |
| GAAGCTGTTTCCAAACTTCG+CGG | 0.562465 | 8_1:+1643557 | Msa1171720:CDS |
| TTGTCGTTGTTCTTCGCCGG+TGG | 0.567729 | 8_1:-1643345 | None:intergenic |
| AAAGGCACCGAAGGTGAAGT+TGG | 0.570890 | 8_1:-1644911 | None:intergenic |
| CTGACGCCGTTTCACAGGCG+CGG | 0.588804 | 8_1:+1643510 | Msa1171720:CDS |
| ACGGTTTCAGTCATGTCCAT+GGG | 0.601023 | 8_1:+1643651 | Msa1171720:CDS |
| TGGGATCATGATGCCAGCAT+CGG | 0.605132 | 8_1:+1643272 | Msa1171720:CDS |
| AAAGTCGGAAAAGGCACCGA+AGG | 0.610022 | 8_1:-1644920 | None:intergenic |
| GAAAGCATAGAAATCAAAGT+CGG | 0.616257 | 8_1:-1644935 | None:intergenic |
| AGAGACAGATGCTATTCCCA+TGG | 0.619618 | 8_1:-1643667 | None:intergenic |
| GAGGCATTTGATACTGTGCA+GGG | 0.621915 | 8_1:+1644571 | Msa1171720:CDS |
| ATCAGGGCAATATCAAGTTG+TGG | 0.630687 | 8_1:-1644968 | None:intergenic |
| GCTTTCGCAGTCGGAAACGG+TGG | 0.645384 | 8_1:-1643306 | None:intergenic |
| CATTAAGTATTATAGAGCCA+AGG | 0.648089 | 8_1:+1645197 | Msa1171720:CDS |
| TTGTGCCGATTATGATTCTG+GGG | 0.648366 | 8_1:+1644649 | Msa1171720:CDS |
| TTCACGACCTACTAAAGACG+AGG | 0.669260 | 8_1:+1643420 | Msa1171720:CDS |
| GCTGTTTCCAAACTTCGCGG+TGG | 0.670880 | 8_1:+1643560 | Msa1171720:CDS |
| CTGTTGGCAGAGATGGCGTG+AGG | 0.672325 | 8_1:+1644552 | Msa1171720:CDS |
| ATTCACTATGGAATTCCAAG+AGG | 0.710595 | 8_1:+1643247 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAAAATAGAAGAATA+AGG | + | chr8_1:1645499-1645518 | Msa1171720:intron | 10.0% |
| !!! | AAGATAAAATGTTTTATGTT+TGG | - | chr8_1:1644316-1644335 | None:intergenic | 15.0% |
| !!! | ATGTTTCTATGTATATTAAT+GGG | + | chr8_1:1644492-1644511 | Msa1171720:intron | 15.0% |
| !!! | TATGATCTCTTTTAATTTTA+AGG | + | chr8_1:1645244-1645263 | Msa1171720:intron | 15.0% |
| !!! | AATTACATATTTACTTTTGT+TGG | + | chr8_1:1645433-1645452 | Msa1171720:intron | 15.0% |
| !!! | AATTAAACTAAATCTAGAAT+AGG | - | chr8_1:1646130-1646149 | None:intergenic | 15.0% |
| !!! | ATTCTAGATTTAGTTTAATT+TGG | + | chr8_1:1646130-1646149 | Msa1171720:intron | 15.0% |
| !!! | TCCAATGTTAATTTGAATTT+AGG | + | chr8_1:1643730-1643749 | Msa1171720:intron | 20.0% |
| !! | ACCTAAATTCAAATTAACAT+TGG | - | chr8_1:1643734-1643753 | None:intergenic | 20.0% |
| !! | AATTTATCTAATATAAGCAC+TGG | - | chr8_1:1644425-1644444 | None:intergenic | 20.0% |
| !!! | CATGTTTCTATGTATATTAA+TGG | + | chr8_1:1644491-1644510 | Msa1171720:intron | 20.0% |
| !! | AAATTCATGAAACAACATTA+AGG | - | chr8_1:1644830-1644849 | None:intergenic | 20.0% |
| !!! | TTTTTTATTGTTTTTTGCAG+CGG | + | chr8_1:1644865-1644884 | Msa1171720:intron | 20.0% |
| !!! | TAATTTTAAGGTTGTATTTG+AGG | + | chr8_1:1645256-1645275 | Msa1171720:intron | 20.0% |
| !! | TATGAATACTATTACTATGT+TGG | + | chr8_1:1645338-1645357 | Msa1171720:intron | 20.0% |
| !! | ATTAAGAATTCTAATGTACA+AGG | - | chr8_1:1645401-1645420 | None:intergenic | 20.0% |
| !! | CTTACTTTGACTATATAAAA+AGG | - | chr8_1:1645806-1645825 | None:intergenic | 20.0% |
| !!! | ATTCTGATTCCTTTTTAGTT+AGG | + | chr8_1:1643378-1643397 | Msa1171720:CDS | 25.0% |
| !!! | TAGAATTGATTTTGCCATTT+TGG | + | chr8_1:1643929-1643948 | Msa1171720:intron | 25.0% |
| !!! | TTTTAGTTTCTGACTAAAAG+TGG | - | chr8_1:1644046-1644065 | None:intergenic | 25.0% |
| ! | TCAAGTATAATCAATTCTTG+AGG | - | chr8_1:1644219-1644238 | None:intergenic | 25.0% |
| ! | TTGAACAATAAGTGTATGTA+TGG | - | chr8_1:1644394-1644413 | None:intergenic | 25.0% |
| !!! | CTTGATATTGTTGTTTTGTT+TGG | + | chr8_1:1645060-1645079 | Msa1171720:intron | 25.0% |
| !! | TTTTTCTATCAATTCATGTC+GGG | - | chr8_1:1645139-1645158 | None:intergenic | 25.0% |
| !! | CTTTTTCTATCAATTCATGT+CGG | - | chr8_1:1645140-1645159 | None:intergenic | 25.0% |
| ! | ATAGAAGAATAAGGAACTAT+TGG | + | chr8_1:1645508-1645527 | Msa1171720:intron | 25.0% |
| !! | ATTCAAAACACTAGTCTATT+AGG | + | chr8_1:1645746-1645765 | Msa1171720:intron | 25.0% |
| ! | CTATATAAAAATGCTCAATG+TGG | - | chr8_1:1645796-1645815 | None:intergenic | 25.0% |
| ! | CTATATAAAAATGCTCAATG+TGG | - | chr8_1:1645796-1645815 | None:intergenic | 25.0% |
| !!! | GATTCCTTTTTAGTTAGGTT+AGG | + | chr8_1:1643383-1643402 | Msa1171720:CDS | 30.0% |
| TTCTCCTAACCTAACTAAAA+AGG | - | chr8_1:1643390-1643409 | None:intergenic | 30.0% | |
| !!! | TTTTTAGTTAGGTTAGGAGA+AGG | + | chr8_1:1643389-1643408 | Msa1171720:CDS | 30.0% |
| AGCTTCTGCATAAAAAAGAA+AGG | - | chr8_1:1643543-1643562 | None:intergenic | 30.0% | |
| ATTCGAATGTGAAATATGCT+TGG | + | chr8_1:1643585-1643604 | Msa1171720:CDS | 30.0% | |
| AATGTGAAATATGCTTGGTA+TGG | + | chr8_1:1643590-1643609 | Msa1171720:CDS | 30.0% | |
| ! | TAAAGAACTAACCTTTGAAG+AGG | - | chr8_1:1643707-1643726 | None:intergenic | 30.0% |
| ATTTCATAAGCTATTCCAAC+CGG | + | chr8_1:1643839-1643858 | Msa1171720:intron | 30.0% | |
| CAAAATGTCTAGTGTATGTT+TGG | + | chr8_1:1643897-1643916 | Msa1171720:intron | 30.0% | |
| ATACTCAATAGCAACCAAAA+TGG | - | chr8_1:1643946-1643965 | None:intergenic | 30.0% | |
| ! | AATTGATTCTACTTGAAGCT+AGG | + | chr8_1:1643966-1643985 | Msa1171720:intron | 30.0% |
| !! | ACTGATTTTCACATGTTTGA+TGG | + | chr8_1:1644171-1644190 | Msa1171720:intron | 30.0% |
| GTAGAATGAATACTCATGTT+TGG | + | chr8_1:1644714-1644733 | Msa1171720:CDS | 30.0% | |
| TTGAAGCTTAAAACATATGC+AGG | - | chr8_1:1644740-1644759 | None:intergenic | 30.0% | |
| !! | TGCATATGTTTTAAGCTTCA+AGG | + | chr8_1:1644739-1644758 | Msa1171720:CDS | 30.0% |
| TTCAAGGTTTCTTCTTTGAA+AGG | + | chr8_1:1644755-1644774 | Msa1171720:CDS | 30.0% | |
| ATAGAAATCAAAGTCGGAAA+AGG | - | chr8_1:1644932-1644951 | None:intergenic | 30.0% | |
| ! | GAAAGCATAGAAATCAAAGT+CGG | - | chr8_1:1644938-1644957 | None:intergenic | 30.0% |
| ! | TTTGATTTCTATGCTTTCCA+AGG | + | chr8_1:1644940-1644959 | Msa1171720:CDS | 30.0% |
| TTTGTAGAACTTGCAAATCA+GGG | - | chr8_1:1644987-1645006 | None:intergenic | 30.0% | |
| TCTTAAACCAATATGCAAGT+AGG | - | chr8_1:1645038-1645057 | None:intergenic | 30.0% | |
| CATTAAGTATTATAGAGCCA+AGG | + | chr8_1:1645197-1645216 | Msa1171720:CDS | 30.0% | |
| GGTAGTGATGCTTAAAAAAT+TGG | + | chr8_1:1645277-1645296 | Msa1171720:intron | 30.0% | |
| TGATCAGTATTCTTATGCAT+TGG | + | chr8_1:1645375-1645394 | Msa1171720:intron | 30.0% | |
| CACATACATCTTCTTATATC+TGG | - | chr8_1:1645550-1645569 | None:intergenic | 30.0% | |
| CAGATATAAGAAGATGTATG+TGG | + | chr8_1:1645548-1645567 | Msa1171720:intron | 30.0% | |
| ! | TTCATCCTATGTCTTTTTAG+GGG | - | chr8_1:1645677-1645696 | None:intergenic | 30.0% |
| ! | CTTCATCCTATGTCTTTTTA+GGG | - | chr8_1:1645678-1645697 | None:intergenic | 30.0% |
| ! | TCTTCATCCTATGTCTTTTT+AGG | - | chr8_1:1645679-1645698 | None:intergenic | 30.0% |
| CTATATAAAAAGGCTCAATG+TGG | - | chr8_1:1645845-1645864 | None:intergenic | 30.0% | |
| ! | AAGTAGAGTGATTTTTCCAA+CGG | - | chr8_1:1645959-1645978 | None:intergenic | 30.0% |
| ACTCTACTTAGTAAGTCAAA+AGG | + | chr8_1:1645970-1645989 | Msa1171720:intron | 30.0% | |
| CTCGAAGGAAAAAAAGAAAA+GGG | - | chr8_1:1646074-1646093 | None:intergenic | 30.0% | |
| !! | GTTAGAGGCATTCTATCAAA+CGG | + | chr8_1:1643632-1643651 | Msa1171720:CDS | 35.0% |
| TTTCATAAGCTATTCCAACC+GGG | + | chr8_1:1643840-1643859 | Msa1171720:intron | 35.0% | |
| AAATAAGGCGACATTCCATA+AGG | + | chr8_1:1643869-1643888 | Msa1171720:intron | 35.0% | |
| !! | AGACATTTTGAGAGACCTTA+TGG | - | chr8_1:1643887-1643906 | None:intergenic | 35.0% |
| ! | GGCAAAATCAATTCTAAGAG+TGG | - | chr8_1:1643925-1643944 | None:intergenic | 35.0% |
| GACTAAAAGTGGTATGTGTT+TGG | - | chr8_1:1644035-1644054 | None:intergenic | 35.0% | |
| ACACATGCTTAGTGTATGTT+TGG | + | chr8_1:1644105-1644124 | Msa1171720:intron | 35.0% | |
| ! | ATGTTTGGTTTCACTTCTAG+AGG | + | chr8_1:1644120-1644139 | Msa1171720:intron | 35.0% |
| ! | TGTTTGGTTTCACTTCTAGA+GGG | + | chr8_1:1644121-1644140 | Msa1171720:intron | 35.0% |
| ! | ACTTCTAGAGGGATCAAAAT+TGG | + | chr8_1:1644132-1644151 | Msa1171720:intron | 35.0% |
| AGTGTAAAAAGTTGTGCTGT+TGG | + | chr8_1:1644536-1644555 | Msa1171720:intron | 35.0% | |
| !! | ATACTGTGCAGGGTTATTTT+GGG | + | chr8_1:1644581-1644600 | Msa1171720:CDS | 35.0% |
| ATCAACCCCAGAATCATAAT+CGG | - | chr8_1:1644657-1644676 | None:intergenic | 35.0% | |
| !!! | TTCTGGGGTTGATAGTTTTT+CGG | + | chr8_1:1644664-1644683 | Msa1171720:CDS | 35.0% |
| CTCCAACTAAGTACATGATT+TGG | + | chr8_1:1644687-1644706 | Msa1171720:CDS | 35.0% | |
| CTCCAAATCATGTACTTAGT+TGG | - | chr8_1:1644692-1644711 | None:intergenic | 35.0% | |
| CTTTGTAGAACTTGCAAATC+AGG | - | chr8_1:1644988-1645007 | None:intergenic | 35.0% | |
| CAAGTTCTACAAAGCTAGAA+AGG | + | chr8_1:1644994-1645013 | Msa1171720:CDS | 35.0% | |
| AAAGCTAGAAAGGTAAGTGT+TGG | + | chr8_1:1645004-1645023 | Msa1171720:intron | 35.0% | |
| TTTGCTTCCTACTTGCATAT+TGG | + | chr8_1:1645028-1645047 | Msa1171720:intron | 35.0% | |
| ! | TCATTTGCTCTATTTCTTGC+AGG | + | chr8_1:1645101-1645120 | Msa1171720:intron | 35.0% |
| GAAAAAGTGAGACAAATTGC+AGG | + | chr8_1:1645153-1645172 | Msa1171720:CDS | 35.0% | |
| GAATGAAACTAGTTGTACCT+TGG | - | chr8_1:1645217-1645236 | None:intergenic | 35.0% | |
| AGAAACTAGATGCACTTCTA+GGG | - | chr8_1:1645618-1645637 | None:intergenic | 35.0% | |
| !! | GTTTTGAATTGAACTCGTTG+TGG | - | chr8_1:1645735-1645754 | None:intergenic | 35.0% |
| GCTCGAAGGAAAAAAAGAAA+AGG | - | chr8_1:1646075-1646094 | None:intergenic | 35.0% | |
| GAAGAAACCTCGTCTTTAGT+AGG | - | chr8_1:1643430-1643449 | None:intergenic | 40.0% | |
| CTAAAGACGAGGTTTCTTCA+TGG | + | chr8_1:1643431-1643450 | Msa1171720:CDS | 40.0% | |
| ! | CTTTGAAGAGGAGAATCATC+TGG | - | chr8_1:1643695-1643714 | None:intergenic | 40.0% |
| CAGATGATTCTCCTCTTCAA+AGG | + | chr8_1:1643693-1643712 | Msa1171720:CDS | 40.0% | |
| !! | CCTTATTTCTATAACCCGGT+TGG | - | chr8_1:1643857-1643876 | None:intergenic | 40.0% |
| CCAACCGGGTTATAGAAATA+AGG | + | chr8_1:1643854-1643873 | Msa1171720:intron | 40.0% | |
| !! | GTCGCCTTATTTCTATAACC+CGG | - | chr8_1:1643861-1643880 | None:intergenic | 40.0% |
| ! | GATACTGTGCAGGGTTATTT+TGG | + | chr8_1:1644580-1644599 | Msa1171720:CDS | 40.0% |
| GAATCATAATCGGCACAACT+TGG | - | chr8_1:1644647-1644666 | None:intergenic | 40.0% | |
| !! | AGTTGTGCCGATTATGATTC+TGG | + | chr8_1:1644647-1644666 | Msa1171720:CDS | 40.0% |
| !! | GTTGTGCCGATTATGATTCT+GGG | + | chr8_1:1644648-1644667 | Msa1171720:CDS | 40.0% |
| !! | TTGTGCCGATTATGATTCTG+GGG | + | chr8_1:1644649-1644668 | Msa1171720:CDS | 40.0% |
| ! | ATCAGGGCAATATCAAGTTG+TGG | - | chr8_1:1644971-1644990 | None:intergenic | 40.0% |
| TGCTATGCTGTTCATACTTG+AGG | + | chr8_1:1645578-1645597 | Msa1171720:intron | 40.0% | |
| GCTATGCTGTTCATACTTGA+GGG | + | chr8_1:1645579-1645598 | Msa1171720:intron | 40.0% | |
| TTCATACTTGAGGGTTGTTC+TGG | + | chr8_1:1645588-1645607 | Msa1171720:intron | 40.0% | |
| GAAACTAGATGCACTTCTAG+GGG | - | chr8_1:1645617-1645636 | None:intergenic | 40.0% | |
| GAGAAACTAGATGCACTTCT+AGG | - | chr8_1:1645619-1645638 | None:intergenic | 40.0% | |
| !! | TGTCTTTTTAGGGGACTTCT+AGG | - | chr8_1:1645668-1645687 | None:intergenic | 40.0% |
| GAAGTCCCCTAAAAAGACAT+AGG | + | chr8_1:1645669-1645688 | Msa1171720:intron | 40.0% | |
| AGCTAGTGTATCATATCCGT+TGG | + | chr8_1:1645940-1645959 | Msa1171720:intron | 40.0% | |
| AGTCAAAAGGACACAGCTAT+TGG | + | chr8_1:1645983-1646002 | Msa1171720:intron | 40.0% | |
| ! | CTACAAGTTTTCAGCAAGCA+AGG | + | chr8_1:1646180-1646199 | Msa1171720:CDS | 40.0% |
| CATCATGATCCCATTCCTCT+TGG | - | chr8_1:1643265-1643284 | None:intergenic | 45.0% | |
| TTCACGACCTACTAAAGACG+AGG | + | chr8_1:1643420-1643439 | Msa1171720:CDS | 45.0% | |
| ACGAGGTTTCTTCATGGCTT+GGG | + | chr8_1:1643437-1643456 | Msa1171720:CDS | 45.0% | |
| ! | GAAGCTGTTTCCAAACTTCG+CGG | + | chr8_1:1643557-1643576 | Msa1171720:CDS | 45.0% |
| TATGCTTGGTATGGAGCTAC+TGG | + | chr8_1:1643599-1643618 | Msa1171720:CDS | 45.0% | |
| ACTGGTGAGAATGACGTTAG+AGG | + | chr8_1:1643617-1643636 | Msa1171720:CDS | 45.0% | |
| AACGGTTTCAGTCATGTCCA+TGG | + | chr8_1:1643650-1643669 | Msa1171720:CDS | 45.0% | |
| ACGGTTTCAGTCATGTCCAT+GGG | + | chr8_1:1643651-1643670 | Msa1171720:CDS | 45.0% | |
| AGAGACAGATGCTATTCCCA+TGG | - | chr8_1:1643670-1643689 | None:intergenic | 45.0% | |
| ! | TGAGGCATTTGATACTGTGC+AGG | + | chr8_1:1644570-1644589 | Msa1171720:CDS | 45.0% |
| ! | GAGGCATTTGATACTGTGCA+GGG | + | chr8_1:1644571-1644590 | Msa1171720:CDS | 45.0% |
| TTTGCAGCGGTTGAGATTGA+AGG | + | chr8_1:1644878-1644897 | Msa1171720:intron | 45.0% | |
| ! | ATCAAGTTGTGGCGAAACCT+TGG | - | chr8_1:1644960-1644979 | None:intergenic | 45.0% |
| ACAATAGCAGACATGCTCGA+AGG | - | chr8_1:1646089-1646108 | None:intergenic | 45.0% | |
| CAGCAAGCAAGGTCAAAGAA+TGG | + | chr8_1:1646191-1646210 | Msa1171720:CDS | 45.0% | |
| TGGGATCATGATGCCAGCAT+CGG | + | chr8_1:1643272-1643291 | Msa1171720:CDS | 50.0% | |
| TCGTTGTCGTTGTTCTTCGC+CGG | - | chr8_1:1643351-1643370 | None:intergenic | 50.0% | |
| GACGAGGTTTCTTCATGGCT+TGG | + | chr8_1:1643436-1643455 | Msa1171720:CDS | 50.0% | |
| ! | AGTTGTGCTGTTGGCAGAGA+TGG | + | chr8_1:1644545-1644564 | Msa1171720:CDS | 50.0% |
| TGCGAGACCAACTTCACCTT+CGG | + | chr8_1:1644904-1644923 | Msa1171720:CDS | 50.0% | |
| !! | AAAGGCACCGAAGGTGAAGT+TGG | - | chr8_1:1644914-1644933 | None:intergenic | 50.0% |
| !! | AAAGTCGGAAAAGGCACCGA+AGG | - | chr8_1:1644923-1644942 | None:intergenic | 50.0% |
| ACCGTTTCCGACTGCGAAAG+CGG | + | chr8_1:1643308-1643327 | Msa1171720:CDS | 55.0% | |
| ACCGCTTTCGCAGTCGGAAA+CGG | - | chr8_1:1643312-1643331 | None:intergenic | 55.0% | |
| GGAAACACCGCTTTCGCAGT+CGG | - | chr8_1:1643318-1643337 | None:intergenic | 55.0% | |
| TTGTCGTTGTTCTTCGCCGG+TGG | - | chr8_1:1643348-1643367 | None:intergenic | 55.0% | |
| GTGTTCTGACGCCGTTTCAC+AGG | + | chr8_1:1643505-1643524 | Msa1171720:CDS | 55.0% | |
| ! | GCTGTTTCCAAACTTCGCGG+TGG | + | chr8_1:1643560-1643579 | Msa1171720:CDS | 55.0% |
| CGAATCTCCACCGCGAAGTT+TGG | - | chr8_1:1643570-1643589 | None:intergenic | 55.0% | |
| GGAGGAGTCTTCACCGATGC+TGG | - | chr8_1:1643288-1643307 | None:intergenic | 60.0% | |
| TTCGCAGTCGGAAACGGTGG+AGG | - | chr8_1:1643306-1643325 | None:intergenic | 60.0% | |
| GCTTTCGCAGTCGGAAACGG+TGG | - | chr8_1:1643309-1643328 | None:intergenic | 60.0% | |
| ! | TTGTTCTTCGCCGGTGGTGG+TGG | - | chr8_1:1643342-1643361 | None:intergenic | 60.0% |
| TCGTTGTTCTTCGCCGGTGG+TGG | - | chr8_1:1643345-1643364 | None:intergenic | 60.0% | |
| TCGAAGCCGCGCCTGTGAAA+CGG | - | chr8_1:1643519-1643538 | None:intergenic | 60.0% | |
| CTGTTGGCAGAGATGGCGTG+AGG | + | chr8_1:1644552-1644571 | Msa1171720:CDS | 60.0% | |
| GGTGTTTCCGCCACCACCAC+CGG | + | chr8_1:1643329-1643348 | Msa1171720:CDS | 65.0% | |
| !! | TTCTTCGCCGGTGGTGGTGG+CGG | - | chr8_1:1643339-1643358 | None:intergenic | 65.0% |
| CTGACGCCGTTTCACAGGCG+CGG | + | chr8_1:1643510-1643529 | Msa1171720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 1643254 | 1646220 | 1643254 | ID=Msa1171720;Name=Msa1171720 |
| chr8_1 | mRNA | 1643254 | 1646220 | 1643254 | ID=Msa1171720-mRNA-1;Parent=Msa1171720;Name=Msa1171720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.75|0.4|1|1|1|5|0|324 |
| chr8_1 | exon | 1643254 | 1643714 | 1643254 | ID=Msa1171720-mRNA-1:exon:481;Parent=Msa1171720-mRNA-1 |
| chr8_1 | exon | 1644538 | 1644776 | 1644538 | ID=Msa1171720-mRNA-1:exon:482;Parent=Msa1171720-mRNA-1 |
| chr8_1 | exon | 1644885 | 1645015 | 1644885 | ID=Msa1171720-mRNA-1:exon:483;Parent=Msa1171720-mRNA-1 |
| chr8_1 | exon | 1645123 | 1645218 | 1645123 | ID=Msa1171720-mRNA-1:exon:484;Parent=Msa1171720-mRNA-1 |
| chr8_1 | exon | 1646173 | 1646220 | 1646173 | ID=Msa1171720-mRNA-1:exon:485;Parent=Msa1171720-mRNA-1 |
| chr8_1 | CDS | 1643254 | 1643714 | 1643254 | ID=Msa1171720-mRNA-1:cds;Parent=Msa1171720-mRNA-1 |
| chr8_1 | CDS | 1644538 | 1644776 | 1644538 | ID=Msa1171720-mRNA-1:cds;Parent=Msa1171720-mRNA-1 |
| chr8_1 | CDS | 1644885 | 1645015 | 1644885 | ID=Msa1171720-mRNA-1:cds;Parent=Msa1171720-mRNA-1 |
| chr8_1 | CDS | 1645123 | 1645218 | 1645123 | ID=Msa1171720-mRNA-1:cds;Parent=Msa1171720-mRNA-1 |
| chr8_1 | CDS | 1646173 | 1646220 | 1646173 | ID=Msa1171720-mRNA-1:cds;Parent=Msa1171720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
