Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511280 | XP_003601269.1 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511280 | sp|Q9ZUD9|SRO2_ARATH | 38.214 | 280 | 160 | 3 | 47 | 314 | 45 | 323 | 9.66e-63 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511280 | G7J5G4 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021400 | Msa0511280 | 0.820820 | 5.603084e-53 | -8.615850e-47 |
| Msa0029700 | Msa0511280 | 0.803673 | 3.115291e-49 | -8.615850e-47 |
| Msa0064960 | Msa0511280 | 0.841640 | 4.204212e-58 | -8.615850e-47 |
| Msa0080020 | Msa0511280 | 0.807195 | 5.691372e-50 | -8.615850e-47 |
| Msa0100200 | Msa0511280 | 0.802629 | 5.122826e-49 | -8.615850e-47 |
| Msa0110240 | Msa0511280 | 0.805178 | 1.513287e-49 | -8.615850e-47 |
| Msa0124960 | Msa0511280 | 0.800438 | 1.441209e-48 | -8.615850e-47 |
| Msa0369660 | Msa0511280 | 0.800139 | 1.657691e-48 | -8.615850e-47 |
| Msa0427850 | Msa0511280 | 0.832811 | 7.637322e-56 | -8.615850e-47 |
| Msa0434140 | Msa0511280 | 0.816269 | 6.033767e-52 | -8.615850e-47 |
| Msa0465420 | Msa0511280 | 0.979455 | 5.262079e-148 | -8.615850e-47 |
| Msa0474080 | Msa0511280 | 0.820163 | 7.929954e-53 | -8.615850e-47 |
| Msa0477660 | Msa0511280 | 0.807433 | 5.066930e-50 | -8.615850e-47 |
| Msa0311130 | Msa0511280 | -0.800228 | 1.590413e-48 | -8.615850e-47 |
| Msa0511280 | Msa0511380 | 0.959169 | 3.795817e-117 | -8.615850e-47 |
| Msa0511280 | Msa0521720 | 0.809080 | 2.258264e-50 | -8.615850e-47 |
| Msa0511280 | Msa0777210 | 0.807669 | 4.514007e-50 | -8.615850e-47 |
| Msa0511280 | Msa0814350 | 0.813607 | 2.349635e-51 | -8.615850e-47 |
| Msa0511280 | Msa0878410 | 0.825818 | 3.808391e-54 | -8.615850e-47 |
| Msa0511280 | Msa0947420 | 0.823595 | 1.272981e-53 | -8.615850e-47 |
| Msa0511280 | Msa0947520 | 0.800359 | 1.495867e-48 | -8.615850e-47 |
| Msa0511280 | Msa1026970 | 0.823032 | 1.723007e-53 | -8.615850e-47 |
| Msa0511280 | Msa1154310 | 0.828295 | 9.735589e-55 | -8.615850e-47 |
| Msa0511280 | Msa1171720 | 0.970813 | 3.438897e-132 | -8.615850e-47 |
| Msa0511280 | Msa1187160 | 0.805258 | 1.455707e-49 | -8.615850e-47 |
| Msa0511280 | Msa1258600 | 0.822042 | 2.927454e-53 | -8.615850e-47 |
| Msa0511280 | Msa1298440 | 0.826856 | 2.156403e-54 | -8.615850e-47 |
| Msa0511280 | Msa1321840 | 0.809109 | 2.225421e-50 | -8.615850e-47 |
| Msa0511280 | Msa1359520 | 0.804295 | 2.313927e-49 | -8.615850e-47 |
| Msa0511280 | Msa1400940 | 0.824121 | 9.584648e-54 | -8.615850e-47 |
| Msa0511280 | Msa1402000 | 0.803106 | 4.082844e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511280 | MtrunA17_Chr3g0117631 | 96.024 | 327 | 10 | 1 | 1 | 324 | 1 | 327 | 0.0 | 645 |
| Msa0511280 | MtrunA17_Chr4g0059061 | 49.363 | 314 | 143 | 5 | 9 | 318 | 11 | 312 | 7.23e-102 | 302 |
| Msa0511280 | MtrunA17_Chr8g0380321 | 35.507 | 276 | 166 | 4 | 39 | 303 | 5 | 279 | 1.77e-53 | 177 |
| Msa0511280 | MtrunA17_Chr1g0210871 | 28.402 | 338 | 193 | 6 | 6 | 299 | 223 | 555 | 7.73e-39 | 144 |
| Msa0511280 | MtrunA17_Chr5g0412301 | 29.969 | 327 | 173 | 8 | 20 | 300 | 233 | 549 | 1.77e-36 | 137 |
| Msa0511280 | MtrunA17_Chr5g0410781 | 32.258 | 186 | 112 | 6 | 58 | 234 | 64 | 244 | 1.69e-27 | 107 |
| Msa0511280 | MtrunA17_Chr7g0217951 | 33.333 | 174 | 103 | 5 | 64 | 228 | 257 | 426 | 2.23e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511280 | AT1G23550.1 | 38.214 | 280 | 160 | 3 | 47 | 314 | 45 | 323 | 9.82e-64 | 204 |
| Msa0511280 | AT3G47720.1 | 36.893 | 309 | 171 | 8 | 10 | 304 | 8 | 306 | 1.63e-56 | 186 |
| Msa0511280 | AT5G62520.1 | 40.672 | 268 | 141 | 8 | 47 | 304 | 42 | 301 | 1.35e-54 | 181 |
| Msa0511280 | AT1G70440.2 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.84e-47 | 162 |
| Msa0511280 | AT1G70440.1 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.84e-47 | 162 |
| Msa0511280 | AT1G32230.6 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0511280 | AT1G32230.4 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0511280 | AT1G32230.2 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0511280 | AT1G32230.5 | 31.561 | 301 | 155 | 7 | 58 | 312 | 276 | 571 | 2.41e-40 | 149 |
| Msa0511280 | AT1G32230.1 | 31.457 | 302 | 155 | 7 | 58 | 312 | 276 | 572 | 2.92e-40 | 149 |
| Msa0511280 | AT1G32230.3 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 7.58e-40 | 147 |
| Msa0511280 | AT5G62520.2 | 40.104 | 192 | 100 | 7 | 47 | 228 | 42 | 228 | 2.09e-37 | 134 |
| Msa0511280 | AT2G35510.1 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.10e-31 | 124 |
| Msa0511280 | AT2G35510.3 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.10e-31 | 124 |
| Msa0511280 | AT2G35510.2 | 32.642 | 193 | 111 | 4 | 48 | 230 | 262 | 445 | 1.73e-25 | 106 |
Find 69 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATACTGTGCAGGGTTATTT+TGG | 0.115015 | 3_4:+60778249 | Msa0511280:CDS |
| AGTTGTGCCGATTATGATTC+TGG | 0.194351 | 3_4:+60778316 | Msa0511280:CDS |
| CGAATCTCCACCGCGAAGTT+TGG | 0.267880 | 3_4:-60777236 | None:intergenic |
| TTCTCCTAACCTAACTAAAA+AGG | 0.275442 | 3_4:-60777056 | None:intergenic |
| CTTTGTAGAACTTGCAAATC+AGG | 0.284073 | 3_4:-60778654 | None:intergenic |
| CTCCAACTAAGTACATGATT+TGG | 0.368420 | 3_4:+60778356 | Msa0511280:CDS |
| CTAAAGACGAGGTTTCTTCA+TGG | 0.400145 | 3_4:+60777100 | Msa0511280:CDS |
| GACGAGGTTTCTTCATGGCT+TGG | 0.402614 | 3_4:+60777105 | Msa0511280:CDS |
| ACGAGGTTTCTTCATGGCTT+GGG | 0.407523 | 3_4:+60777106 | Msa0511280:CDS |
| TTCTTCGCCGGTGGTGGTGG+CGG | 0.412701 | 3_4:-60777005 | None:intergenic |
| CAAGTTCTACAAAGCTAGAA+AGG | 0.426903 | 3_4:+60778663 | Msa0511280:CDS |
| GTAGAATGAATACTCATGTT+TGG | 0.434386 | 3_4:+60778383 | Msa0511280:CDS |
| ACTGGTGAGAATGACGTTAG+AGG | 0.440885 | 3_4:+60777286 | Msa0511280:CDS |
| CATCATGATCCCATTCCTCT+TGG | 0.443393 | 3_4:-60776931 | None:intergenic |
| GTTGTGCCGATTATGATTCT+GGG | 0.444710 | 3_4:+60778317 | Msa0511280:CDS |
| CTTTGAAGAGGAGAATCATC+TGG | 0.446663 | 3_4:-60777361 | None:intergenic |
| TTCAAGGTTTCTTCTTTGAA+AGG | 0.449498 | 3_4:+60778424 | Msa0511280:CDS |
| CTCCAAATCATGTACTTAGT+TGG | 0.452958 | 3_4:-60778358 | None:intergenic |
| TTGTTCTTCGCCGGTGGTGG+TGG | 0.454132 | 3_4:-60777008 | None:intergenic |
| ATCAAGTTGTGGCGAAACCT+TGG | 0.465639 | 3_4:-60778626 | None:intergenic |
| TGAGGCATTTGATACTGTGC+AGG | 0.465779 | 3_4:+60778239 | Msa0511280:CDS |
| GGAGGAGTCTTCACCGATGC+TGG | 0.466913 | 3_4:-60776954 | None:intergenic |
| TTTGCAGCGGTTGAGATTGA+AGG | 0.470522 | 3_4:+60778547 | Msa0511280:intron |
| ATCAACCCCAGAATCATAAT+CGG | 0.471467 | 3_4:-60778323 | None:intergenic |
| TATGGAATTCCAAGAGGAAT+GGG | 0.475448 | 3_4:+60776922 | None:intergenic |
| ATAGAAATCAAAGTCGGAAA+AGG | 0.484157 | 3_4:-60778598 | None:intergenic |
| TGCGAGACCAACTTCACCTT+CGG | 0.491538 | 3_4:+60778573 | Msa0511280:CDS |
| ACCGCTTTCGCAGTCGGAAA+CGG | 0.496051 | 3_4:-60776978 | None:intergenic |
| TTTGATTTCTATGCTTTCCA+AGG | 0.497741 | 3_4:+60778609 | Msa0511280:CDS |
| GAATCATAATCGGCACAACT+TGG | 0.501035 | 3_4:-60778313 | None:intergenic |
| TATGCTTGGTATGGAGCTAC+TGG | 0.501397 | 3_4:+60777268 | Msa0511280:CDS |
| TTCGCAGTCGGAAACGGTGG+AGG | 0.502683 | 3_4:-60776972 | None:intergenic |
| TCGAAGCCGCGCCTGTGAAA+CGG | 0.510220 | 3_4:-60777185 | None:intergenic |
| TTGAAGCTTAAAACATATGC+AGG | 0.515889 | 3_4:-60778406 | None:intergenic |
| CAGCAAGCAAGGTCAAAGAA+TGG | 0.519355 | 3_4:+60779860 | Msa0511280:CDS |
| TAAAGAACTAACCTTTGAAG+AGG | 0.520559 | 3_4:-60777373 | None:intergenic |
| TTTGTAGAACTTGCAAATCA+GGG | 0.522828 | 3_4:-60778653 | None:intergenic |
| GTGTTCTGACGCCGTTTCAC+AGG | 0.529220 | 3_4:+60777174 | Msa0511280:CDS |
| AACGGTTTCAGTCATGTCCA+TGG | 0.529234 | 3_4:+60777319 | Msa0511280:CDS |
| GAAGAAACCTCGTCTTTAGT+AGG | 0.529434 | 3_4:-60777096 | None:intergenic |
| TCGTTGTTCTTCGCCGGTGG+TGG | 0.529479 | 3_4:-60777011 | None:intergenic |
| AGTTGTGCTGTTGGCAGAGA+TGG | 0.530261 | 3_4:+60778214 | Msa0511280:CDS |
| CTATGGAATTCCAAGAGGAA+TGG | 0.530385 | 3_4:+60776921 | None:intergenic |
| ACCGTTTCCGACTGCGAAAG+CGG | 0.530594 | 3_4:+60776977 | Msa0511280:CDS |
| GGTGTTTCCGCCACCACCAC+CGG | 0.531519 | 3_4:+60776998 | Msa0511280:CDS |
| GTTAGAGGCATTCTATCAAA+CGG | 0.543708 | 3_4:+60777301 | Msa0511280:CDS |
| ATTCGAATGTGAAATATGCT+TGG | 0.547805 | 3_4:+60777254 | Msa0511280:CDS |
| CAGATGATTCTCCTCTTCAA+AGG | 0.551412 | 3_4:+60777362 | Msa0511280:CDS |
| AATGTGAAATATGCTTGGTA+TGG | 0.558383 | 3_4:+60777259 | Msa0511280:CDS |
| TCGTTGTCGTTGTTCTTCGC+CGG | 0.558549 | 3_4:-60777017 | None:intergenic |
| GGAAACACCGCTTTCGCAGT+CGG | 0.561570 | 3_4:-60776984 | None:intergenic |
| GAAGCTGTTTCCAAACTTCG+CGG | 0.562465 | 3_4:+60777226 | Msa0511280:CDS |
| TTGTCGTTGTTCTTCGCCGG+TGG | 0.567729 | 3_4:-60777014 | None:intergenic |
| AAAGGCACCGAAGGTGAAGT+TGG | 0.570890 | 3_4:-60778580 | None:intergenic |
| CTGACGCCGTTTCACAGGCG+CGG | 0.588804 | 3_4:+60777179 | Msa0511280:CDS |
| ACGGTTTCAGTCATGTCCAT+GGG | 0.601023 | 3_4:+60777320 | Msa0511280:CDS |
| TGGGATCATGATGCCAGCAT+CGG | 0.605132 | 3_4:+60776941 | Msa0511280:CDS |
| AAAGTCGGAAAAGGCACCGA+AGG | 0.610022 | 3_4:-60778589 | None:intergenic |
| GAAAGCATAGAAATCAAAGT+CGG | 0.616257 | 3_4:-60778604 | None:intergenic |
| AGAGACAGATGCTATTCCCA+TGG | 0.619618 | 3_4:-60777336 | None:intergenic |
| GAGGCATTTGATACTGTGCA+GGG | 0.621915 | 3_4:+60778240 | Msa0511280:CDS |
| ATCAGGGCAATATCAAGTTG+TGG | 0.630687 | 3_4:-60778637 | None:intergenic |
| GCTTTCGCAGTCGGAAACGG+TGG | 0.645384 | 3_4:-60776975 | None:intergenic |
| CATTAAGTATTATAGAGCCA+AGG | 0.648089 | 3_4:+60778866 | Msa0511280:CDS |
| TTGTGCCGATTATGATTCTG+GGG | 0.648366 | 3_4:+60778318 | Msa0511280:CDS |
| TTCACGACCTACTAAAGACG+AGG | 0.669260 | 3_4:+60777089 | Msa0511280:CDS |
| GCTGTTTCCAAACTTCGCGG+TGG | 0.670880 | 3_4:+60777229 | Msa0511280:CDS |
| CTGTTGGCAGAGATGGCGTG+AGG | 0.672325 | 3_4:+60778221 | Msa0511280:CDS |
| ATTCACTATGGAATTCCAAG+AGG | 0.710595 | 3_4:+60776916 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAAAATAGAAGAATA+AGG | + | chr3_4:60779168-60779187 | Msa0511280:intron | 10.0% |
| !!! | AAGATAAAATGTTTTATGTT+TGG | - | chr3_4:60777985-60778004 | None:intergenic | 15.0% |
| !!! | TATGATCTCTTTTAATTTTA+AGG | + | chr3_4:60778913-60778932 | Msa0511280:intron | 15.0% |
| !!! | AATTACATATTTACTTTTGT+TGG | + | chr3_4:60779102-60779121 | Msa0511280:intron | 15.0% |
| !!! | AATTAAACTAAATCTAGAAT+AGG | - | chr3_4:60779799-60779818 | None:intergenic | 15.0% |
| !!! | ATTCTAGATTTAGTTTAATT+TGG | + | chr3_4:60779799-60779818 | Msa0511280:intron | 15.0% |
| !!! | TCCAATGTTAATTTGAATTT+AGG | + | chr3_4:60777399-60777418 | Msa0511280:intron | 20.0% |
| !! | ACCTAAATTCAAATTAACAT+TGG | - | chr3_4:60777403-60777422 | None:intergenic | 20.0% |
| !! | AATTTATCTAATATAAGCAC+TGG | - | chr3_4:60778094-60778113 | None:intergenic | 20.0% |
| !!! | ATGTTTCTATGTATATTGAT+GGG | + | chr3_4:60778161-60778180 | Msa0511280:intron | 20.0% |
| !! | AAATTCATGAAACAACATTA+AGG | - | chr3_4:60778499-60778518 | None:intergenic | 20.0% |
| !!! | TTTTTTATTGTTTTTTGCAG+CGG | + | chr3_4:60778534-60778553 | Msa0511280:intron | 20.0% |
| !!! | TAATTTTAAGGTTGTATTTG+AGG | + | chr3_4:60778925-60778944 | Msa0511280:intron | 20.0% |
| !! | TATGAATACTATTACTATGT+TGG | + | chr3_4:60779007-60779026 | Msa0511280:intron | 20.0% |
| !! | ATTAAGAATTCTAATGTACA+AGG | - | chr3_4:60779070-60779089 | None:intergenic | 20.0% |
| !! | CTTACTTTGACTATATAAAA+AGG | - | chr3_4:60779475-60779494 | None:intergenic | 20.0% |
| !!! | ATTCTGATTCCTTTTTAGTT+AGG | + | chr3_4:60777047-60777066 | Msa0511280:CDS | 25.0% |
| !!! | TAGAATTGATTTTGCCATTT+TGG | + | chr3_4:60777598-60777617 | Msa0511280:intron | 25.0% |
| !!! | TTTTAGTTTCTGACTAAAAG+TGG | - | chr3_4:60777715-60777734 | None:intergenic | 25.0% |
| ! | TCAAGTATAATCAATTCTTG+AGG | - | chr3_4:60777888-60777907 | None:intergenic | 25.0% |
| ! | TTGAACAATAAGTGTATGTA+TGG | - | chr3_4:60778063-60778082 | None:intergenic | 25.0% |
| !! | CATGTTTCTATGTATATTGA+TGG | + | chr3_4:60778160-60778179 | Msa0511280:intron | 25.0% |
| !!! | CTTGATATTGTTGTTTTGTT+TGG | + | chr3_4:60778729-60778748 | Msa0511280:intron | 25.0% |
| !! | TTTTTCTATCAATTCATGTC+GGG | - | chr3_4:60778808-60778827 | None:intergenic | 25.0% |
| !! | CTTTTTCTATCAATTCATGT+CGG | - | chr3_4:60778809-60778828 | None:intergenic | 25.0% |
| ! | ATAGAAGAATAAGGAACTAT+TGG | + | chr3_4:60779177-60779196 | Msa0511280:intron | 25.0% |
| !! | ATTCAAAACACTAGTCTATT+AGG | + | chr3_4:60779415-60779434 | Msa0511280:intron | 25.0% |
| ! | CTATATAAAAATGCTCAATG+TGG | - | chr3_4:60779465-60779484 | None:intergenic | 25.0% |
| ! | CTATATAAAAATGCTCAATG+TGG | - | chr3_4:60779465-60779484 | None:intergenic | 25.0% |
| !!! | GATTCCTTTTTAGTTAGGTT+AGG | + | chr3_4:60777052-60777071 | Msa0511280:CDS | 30.0% |
| TTCTCCTAACCTAACTAAAA+AGG | - | chr3_4:60777059-60777078 | None:intergenic | 30.0% | |
| !!! | TTTTTAGTTAGGTTAGGAGA+AGG | + | chr3_4:60777058-60777077 | Msa0511280:CDS | 30.0% |
| AGCTTCTGCATAAAAAAGAA+AGG | - | chr3_4:60777212-60777231 | None:intergenic | 30.0% | |
| ATTCGAATGTGAAATATGCT+TGG | + | chr3_4:60777254-60777273 | Msa0511280:CDS | 30.0% | |
| AATGTGAAATATGCTTGGTA+TGG | + | chr3_4:60777259-60777278 | Msa0511280:CDS | 30.0% | |
| ! | TAAAGAACTAACCTTTGAAG+AGG | - | chr3_4:60777376-60777395 | None:intergenic | 30.0% |
| ATTTCATAAGCTATTCCAAC+CGG | + | chr3_4:60777508-60777527 | Msa0511280:intron | 30.0% | |
| CAAAATGTCTAGTGTATGTT+TGG | + | chr3_4:60777566-60777585 | Msa0511280:intron | 30.0% | |
| ATACTCAATAGCAACCAAAA+TGG | - | chr3_4:60777615-60777634 | None:intergenic | 30.0% | |
| ! | AATTGATTCTACTTGAAGCT+AGG | + | chr3_4:60777635-60777654 | Msa0511280:intron | 30.0% |
| !! | ACTGATTTTCACATGTTTGA+TGG | + | chr3_4:60777840-60777859 | Msa0511280:intron | 30.0% |
| GTAGAATGAATACTCATGTT+TGG | + | chr3_4:60778383-60778402 | Msa0511280:CDS | 30.0% | |
| TTGAAGCTTAAAACATATGC+AGG | - | chr3_4:60778409-60778428 | None:intergenic | 30.0% | |
| !! | TGCATATGTTTTAAGCTTCA+AGG | + | chr3_4:60778408-60778427 | Msa0511280:CDS | 30.0% |
| TTCAAGGTTTCTTCTTTGAA+AGG | + | chr3_4:60778424-60778443 | Msa0511280:CDS | 30.0% | |
| ATAGAAATCAAAGTCGGAAA+AGG | - | chr3_4:60778601-60778620 | None:intergenic | 30.0% | |
| ! | GAAAGCATAGAAATCAAAGT+CGG | - | chr3_4:60778607-60778626 | None:intergenic | 30.0% |
| ! | TTTGATTTCTATGCTTTCCA+AGG | + | chr3_4:60778609-60778628 | Msa0511280:CDS | 30.0% |
| TTTGTAGAACTTGCAAATCA+GGG | - | chr3_4:60778656-60778675 | None:intergenic | 30.0% | |
| TCTTAAACCAATATGCAAGT+AGG | - | chr3_4:60778707-60778726 | None:intergenic | 30.0% | |
| CATTAAGTATTATAGAGCCA+AGG | + | chr3_4:60778866-60778885 | Msa0511280:CDS | 30.0% | |
| GGTAGTGATGCTTAAAAAAT+TGG | + | chr3_4:60778946-60778965 | Msa0511280:intron | 30.0% | |
| TGATCAGTATTCTTATGCAT+TGG | + | chr3_4:60779044-60779063 | Msa0511280:intron | 30.0% | |
| CACATACATCTTCTTATATC+TGG | - | chr3_4:60779219-60779238 | None:intergenic | 30.0% | |
| CAGATATAAGAAGATGTATG+TGG | + | chr3_4:60779217-60779236 | Msa0511280:intron | 30.0% | |
| ! | TTCATCCTATGTCTTTTTAG+GGG | - | chr3_4:60779346-60779365 | None:intergenic | 30.0% |
| ! | CTTCATCCTATGTCTTTTTA+GGG | - | chr3_4:60779347-60779366 | None:intergenic | 30.0% |
| ! | TCTTCATCCTATGTCTTTTT+AGG | - | chr3_4:60779348-60779367 | None:intergenic | 30.0% |
| CTATATAAAAAGGCTCAATG+TGG | - | chr3_4:60779514-60779533 | None:intergenic | 30.0% | |
| ! | AAGTAGAGTGATTTTTCCAA+CGG | - | chr3_4:60779628-60779647 | None:intergenic | 30.0% |
| ACTCTACTTAGTAAGTCAAA+AGG | + | chr3_4:60779639-60779658 | Msa0511280:intron | 30.0% | |
| CTCGAAGGAAAAAAAGAAAA+GGG | - | chr3_4:60779743-60779762 | None:intergenic | 30.0% | |
| !! | GTTAGAGGCATTCTATCAAA+CGG | + | chr3_4:60777301-60777320 | Msa0511280:CDS | 35.0% |
| TTTCATAAGCTATTCCAACC+GGG | + | chr3_4:60777509-60777528 | Msa0511280:intron | 35.0% | |
| AAATAAGGCGACATTCCATA+AGG | + | chr3_4:60777538-60777557 | Msa0511280:intron | 35.0% | |
| !! | AGACATTTTGAGAGACCTTA+TGG | - | chr3_4:60777556-60777575 | None:intergenic | 35.0% |
| ! | GGCAAAATCAATTCTAAGAG+TGG | - | chr3_4:60777594-60777613 | None:intergenic | 35.0% |
| GACTAAAAGTGGTATGTGTT+TGG | - | chr3_4:60777704-60777723 | None:intergenic | 35.0% | |
| ACACATGCTTAGTGTATGTT+TGG | + | chr3_4:60777774-60777793 | Msa0511280:intron | 35.0% | |
| ! | ATGTTTGGTTTCACTTCTAG+AGG | + | chr3_4:60777789-60777808 | Msa0511280:intron | 35.0% |
| ! | TGTTTGGTTTCACTTCTAGA+GGG | + | chr3_4:60777790-60777809 | Msa0511280:intron | 35.0% |
| ! | ACTTCTAGAGGGATCAAAAT+TGG | + | chr3_4:60777801-60777820 | Msa0511280:intron | 35.0% |
| AGTGTAAAAAGTTGTGCTGT+TGG | + | chr3_4:60778205-60778224 | Msa0511280:intron | 35.0% | |
| !! | ATACTGTGCAGGGTTATTTT+GGG | + | chr3_4:60778250-60778269 | Msa0511280:CDS | 35.0% |
| ATCAACCCCAGAATCATAAT+CGG | - | chr3_4:60778326-60778345 | None:intergenic | 35.0% | |
| !!! | TTCTGGGGTTGATAGTTTTT+CGG | + | chr3_4:60778333-60778352 | Msa0511280:CDS | 35.0% |
| CTCCAACTAAGTACATGATT+TGG | + | chr3_4:60778356-60778375 | Msa0511280:CDS | 35.0% | |
| CTCCAAATCATGTACTTAGT+TGG | - | chr3_4:60778361-60778380 | None:intergenic | 35.0% | |
| CTTTGTAGAACTTGCAAATC+AGG | - | chr3_4:60778657-60778676 | None:intergenic | 35.0% | |
| CAAGTTCTACAAAGCTAGAA+AGG | + | chr3_4:60778663-60778682 | Msa0511280:CDS | 35.0% | |
| AAAGCTAGAAAGGTAAGTGT+TGG | + | chr3_4:60778673-60778692 | Msa0511280:intron | 35.0% | |
| TTTGCTTCCTACTTGCATAT+TGG | + | chr3_4:60778697-60778716 | Msa0511280:intron | 35.0% | |
| ! | TCATTTGCTCTATTTCTTGC+AGG | + | chr3_4:60778770-60778789 | Msa0511280:intron | 35.0% |
| GAAAAAGTGAGACAAATTGC+AGG | + | chr3_4:60778822-60778841 | Msa0511280:CDS | 35.0% | |
| GAATGAAACTAGTTGTACCT+TGG | - | chr3_4:60778886-60778905 | None:intergenic | 35.0% | |
| AGAAACTAGATGCACTTCTA+GGG | - | chr3_4:60779287-60779306 | None:intergenic | 35.0% | |
| !! | GTTTTGAATTGAACTCGTTG+TGG | - | chr3_4:60779404-60779423 | None:intergenic | 35.0% |
| GCTCGAAGGAAAAAAAGAAA+AGG | - | chr3_4:60779744-60779763 | None:intergenic | 35.0% | |
| GAAGAAACCTCGTCTTTAGT+AGG | - | chr3_4:60777099-60777118 | None:intergenic | 40.0% | |
| CTAAAGACGAGGTTTCTTCA+TGG | + | chr3_4:60777100-60777119 | Msa0511280:CDS | 40.0% | |
| ! | CTTTGAAGAGGAGAATCATC+TGG | - | chr3_4:60777364-60777383 | None:intergenic | 40.0% |
| CAGATGATTCTCCTCTTCAA+AGG | + | chr3_4:60777362-60777381 | Msa0511280:CDS | 40.0% | |
| !! | CCTTATTTCTATAACCCGGT+TGG | - | chr3_4:60777526-60777545 | None:intergenic | 40.0% |
| CCAACCGGGTTATAGAAATA+AGG | + | chr3_4:60777523-60777542 | Msa0511280:intron | 40.0% | |
| !! | GTCGCCTTATTTCTATAACC+CGG | - | chr3_4:60777530-60777549 | None:intergenic | 40.0% |
| ! | GATACTGTGCAGGGTTATTT+TGG | + | chr3_4:60778249-60778268 | Msa0511280:CDS | 40.0% |
| GAATCATAATCGGCACAACT+TGG | - | chr3_4:60778316-60778335 | None:intergenic | 40.0% | |
| !! | AGTTGTGCCGATTATGATTC+TGG | + | chr3_4:60778316-60778335 | Msa0511280:CDS | 40.0% |
| !! | GTTGTGCCGATTATGATTCT+GGG | + | chr3_4:60778317-60778336 | Msa0511280:CDS | 40.0% |
| !! | TTGTGCCGATTATGATTCTG+GGG | + | chr3_4:60778318-60778337 | Msa0511280:CDS | 40.0% |
| ! | ATCAGGGCAATATCAAGTTG+TGG | - | chr3_4:60778640-60778659 | None:intergenic | 40.0% |
| TGCTATGCTGTTCATACTTG+AGG | + | chr3_4:60779247-60779266 | Msa0511280:intron | 40.0% | |
| GCTATGCTGTTCATACTTGA+GGG | + | chr3_4:60779248-60779267 | Msa0511280:intron | 40.0% | |
| TTCATACTTGAGGGTTGTTC+TGG | + | chr3_4:60779257-60779276 | Msa0511280:intron | 40.0% | |
| GAAACTAGATGCACTTCTAG+GGG | - | chr3_4:60779286-60779305 | None:intergenic | 40.0% | |
| GAGAAACTAGATGCACTTCT+AGG | - | chr3_4:60779288-60779307 | None:intergenic | 40.0% | |
| !! | TGTCTTTTTAGGGGACTTCT+AGG | - | chr3_4:60779337-60779356 | None:intergenic | 40.0% |
| GAAGTCCCCTAAAAAGACAT+AGG | + | chr3_4:60779338-60779357 | Msa0511280:intron | 40.0% | |
| AGTCAAAAGGACACAGCTAT+TGG | + | chr3_4:60779652-60779671 | Msa0511280:intron | 40.0% | |
| ! | CTACAAGTTTTCAGCAAGCA+AGG | + | chr3_4:60779849-60779868 | Msa0511280:CDS | 40.0% |
| CATCATGATCCCATTCCTCT+TGG | - | chr3_4:60776934-60776953 | None:intergenic | 45.0% | |
| TTCACGACCTACTAAAGACG+AGG | + | chr3_4:60777089-60777108 | Msa0511280:CDS | 45.0% | |
| ACGAGGTTTCTTCATGGCTT+GGG | + | chr3_4:60777106-60777125 | Msa0511280:CDS | 45.0% | |
| ! | GAAGCTGTTTCCAAACTTCG+CGG | + | chr3_4:60777226-60777245 | Msa0511280:CDS | 45.0% |
| TATGCTTGGTATGGAGCTAC+TGG | + | chr3_4:60777268-60777287 | Msa0511280:CDS | 45.0% | |
| ACTGGTGAGAATGACGTTAG+AGG | + | chr3_4:60777286-60777305 | Msa0511280:CDS | 45.0% | |
| AACGGTTTCAGTCATGTCCA+TGG | + | chr3_4:60777319-60777338 | Msa0511280:CDS | 45.0% | |
| ACGGTTTCAGTCATGTCCAT+GGG | + | chr3_4:60777320-60777339 | Msa0511280:CDS | 45.0% | |
| AGAGACAGATGCTATTCCCA+TGG | - | chr3_4:60777339-60777358 | None:intergenic | 45.0% | |
| ! | TGAGGCATTTGATACTGTGC+AGG | + | chr3_4:60778239-60778258 | Msa0511280:CDS | 45.0% |
| ! | GAGGCATTTGATACTGTGCA+GGG | + | chr3_4:60778240-60778259 | Msa0511280:CDS | 45.0% |
| TTTGCAGCGGTTGAGATTGA+AGG | + | chr3_4:60778547-60778566 | Msa0511280:intron | 45.0% | |
| ! | ATCAAGTTGTGGCGAAACCT+TGG | - | chr3_4:60778629-60778648 | None:intergenic | 45.0% |
| AGCTAGTGTGTCATATCCGT+TGG | + | chr3_4:60779609-60779628 | Msa0511280:intron | 45.0% | |
| ACAATAGCAGACATGCTCGA+AGG | - | chr3_4:60779758-60779777 | None:intergenic | 45.0% | |
| CAGCAAGCAAGGTCAAAGAA+TGG | + | chr3_4:60779860-60779879 | Msa0511280:CDS | 45.0% | |
| TGGGATCATGATGCCAGCAT+CGG | + | chr3_4:60776941-60776960 | Msa0511280:CDS | 50.0% | |
| TCGTTGTCGTTGTTCTTCGC+CGG | - | chr3_4:60777020-60777039 | None:intergenic | 50.0% | |
| GACGAGGTTTCTTCATGGCT+TGG | + | chr3_4:60777105-60777124 | Msa0511280:CDS | 50.0% | |
| ! | AGTTGTGCTGTTGGCAGAGA+TGG | + | chr3_4:60778214-60778233 | Msa0511280:CDS | 50.0% |
| TGCGAGACCAACTTCACCTT+CGG | + | chr3_4:60778573-60778592 | Msa0511280:CDS | 50.0% | |
| !! | AAAGGCACCGAAGGTGAAGT+TGG | - | chr3_4:60778583-60778602 | None:intergenic | 50.0% |
| !! | AAAGTCGGAAAAGGCACCGA+AGG | - | chr3_4:60778592-60778611 | None:intergenic | 50.0% |
| ACCGTTTCCGACTGCGAAAG+CGG | + | chr3_4:60776977-60776996 | Msa0511280:CDS | 55.0% | |
| ACCGCTTTCGCAGTCGGAAA+CGG | - | chr3_4:60776981-60777000 | None:intergenic | 55.0% | |
| GGAAACACCGCTTTCGCAGT+CGG | - | chr3_4:60776987-60777006 | None:intergenic | 55.0% | |
| TTGTCGTTGTTCTTCGCCGG+TGG | - | chr3_4:60777017-60777036 | None:intergenic | 55.0% | |
| GTGTTCTGACGCCGTTTCAC+AGG | + | chr3_4:60777174-60777193 | Msa0511280:CDS | 55.0% | |
| ! | GCTGTTTCCAAACTTCGCGG+TGG | + | chr3_4:60777229-60777248 | Msa0511280:CDS | 55.0% |
| CGAATCTCCACCGCGAAGTT+TGG | - | chr3_4:60777239-60777258 | None:intergenic | 55.0% | |
| GGAGGAGTCTTCACCGATGC+TGG | - | chr3_4:60776957-60776976 | None:intergenic | 60.0% | |
| TTCGCAGTCGGAAACGGTGG+AGG | - | chr3_4:60776975-60776994 | None:intergenic | 60.0% | |
| GCTTTCGCAGTCGGAAACGG+TGG | - | chr3_4:60776978-60776997 | None:intergenic | 60.0% | |
| ! | TTGTTCTTCGCCGGTGGTGG+TGG | - | chr3_4:60777011-60777030 | None:intergenic | 60.0% |
| TCGTTGTTCTTCGCCGGTGG+TGG | - | chr3_4:60777014-60777033 | None:intergenic | 60.0% | |
| TCGAAGCCGCGCCTGTGAAA+CGG | - | chr3_4:60777188-60777207 | None:intergenic | 60.0% | |
| CTGTTGGCAGAGATGGCGTG+AGG | + | chr3_4:60778221-60778240 | Msa0511280:CDS | 60.0% | |
| GGTGTTTCCGCCACCACCAC+CGG | + | chr3_4:60776998-60777017 | Msa0511280:CDS | 65.0% | |
| !! | TTCTTCGCCGGTGGTGGTGG+CGG | - | chr3_4:60777008-60777027 | None:intergenic | 65.0% |
| CTGACGCCGTTTCACAGGCG+CGG | + | chr3_4:60777179-60777198 | Msa0511280:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 60776923 | 60779889 | 60776923 | ID=Msa0511280;Name=Msa0511280 |
| chr3_4 | mRNA | 60776923 | 60779889 | 60776923 | ID=Msa0511280-mRNA-1;Parent=Msa0511280;Name=Msa0511280-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.75|0.4|1|1|1|5|0|324 |
| chr3_4 | exon | 60776923 | 60777383 | 60776923 | ID=Msa0511280-mRNA-1:exon:14576;Parent=Msa0511280-mRNA-1 |
| chr3_4 | exon | 60778207 | 60778445 | 60778207 | ID=Msa0511280-mRNA-1:exon:14577;Parent=Msa0511280-mRNA-1 |
| chr3_4 | exon | 60778554 | 60778684 | 60778554 | ID=Msa0511280-mRNA-1:exon:14578;Parent=Msa0511280-mRNA-1 |
| chr3_4 | exon | 60778792 | 60778887 | 60778792 | ID=Msa0511280-mRNA-1:exon:14579;Parent=Msa0511280-mRNA-1 |
| chr3_4 | exon | 60779842 | 60779889 | 60779842 | ID=Msa0511280-mRNA-1:exon:14580;Parent=Msa0511280-mRNA-1 |
| chr3_4 | CDS | 60776923 | 60777383 | 60776923 | ID=Msa0511280-mRNA-1:cds;Parent=Msa0511280-mRNA-1 |
| chr3_4 | CDS | 60778207 | 60778445 | 60778207 | ID=Msa0511280-mRNA-1:cds;Parent=Msa0511280-mRNA-1 |
| chr3_4 | CDS | 60778554 | 60778684 | 60778554 | ID=Msa0511280-mRNA-1:cds;Parent=Msa0511280-mRNA-1 |
| chr3_4 | CDS | 60778792 | 60778887 | 60778792 | ID=Msa0511280-mRNA-1:cds;Parent=Msa0511280-mRNA-1 |
| chr3_4 | CDS | 60779842 | 60779889 | 60779842 | ID=Msa0511280-mRNA-1:cds;Parent=Msa0511280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
