AlfalfaGEDB | Msa0011500

M. sativa cultivar zhongmu-4 / Msa0011500

KEGG: K13459
GO: -
PFAM: PF00931.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011500	XP_024632439.2	24.599	374	234	13	963	1303	1394	1752	6.81e-13	87.4
Msa0011500	XP_024632439.2	24.940	417	241	12	768	1176	2386	2738	6.71e-17	100
Msa0011500	XP_024632439.2	25.698	358	234	13	964	1297	2440	2789	6.09e-12	84.3
Msa0011500	XP_024632439.2	25.962	416	223	14	787	1187	1358	1703	6.60e-16	97.4
Msa0011500	XP_024632439.2	31.947	457	211	13	933	1303	794	1236	5.16e-41	179
Msa0011500	XP_024632439.2	83.234	1175	196	1	1	1174	1	1175	0.0	1950

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011500	sp\|Q9T048\|DRL27_ARATH	27.054	913	585	27	1	867	1	878	1.52e-72	266

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0011500	0.805070	1.593863e-49	-8.615850e-47
Msa0006110	Msa0011500	0.812053	5.144639e-51	-8.615850e-47
Msa0011500	Msa0014570	0.823613	1.260735e-53	-8.615850e-47
Msa0011500	Msa0014710	0.820203	7.763588e-53	-8.615850e-47
Msa0011500	Msa0017510	0.815458	9.150909e-52	-8.615850e-47
Msa0011500	Msa0022550	0.813610	2.345977e-51	-8.615850e-47
Msa0011500	Msa0029880	0.815157	1.067622e-51	-8.615850e-47
Msa0011500	Msa0045790	0.823969	1.040057e-53	-8.615850e-47
Msa0011500	Msa0046160	0.821108	4.809659e-53	-8.615850e-47
Msa0011500	Msa0054820	0.800971	1.121840e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011500	MtrunA17_Chr2g0323691	83.234	1175	196	1	1	1174	1	1175	0.0	1950
Msa0011500	MtrunA17_Chr2g0323691	31.947	457	211	13	933	1303	794	1236	4.99e-45	179
Msa0011500	MtrunA17_Chr2g0323691	24.940	417	241	12	768	1176	2382	2734	6.44e-21	100
Msa0011500	MtrunA17_Chr2g0323691	25.962	416	223	14	787	1187	1358	1703	6.39e-20	97.1
Msa0011500	MtrunA17_Chr2g0323691	24.599	374	234	13	963	1303	1394	1752	6.75e-17	87.4
Msa0011500	MtrunA17_Chr2g0323691	25.698	358	234	13	964	1297	2436	2785	5.89e-16	84.0
Msa0011500	MtrunA17_Chr2g0323691	25.059	427	225	15	768	1174	1862	2213	1.56e-14	79.3
Msa0011500	MtrunA17_Chr2g0323691	23.989	371	229	14	964	1299	1916	2268	1.17e-13	76.6
Msa0011500	MtrunA17_Chr2g0323691	26.629	353	207	10	747	1055	1919	2263	4.01e-13	74.7
Msa0011500	MtrunA17_Chr2g0323691	24.406	463	285	19	743	1184	2599	3017	5.36e-12	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011500	AT4G27190.1	27.054	913	585	27	1	867	1	878	1.54e-73	266
Msa0011500	AT4G27220.1	28.889	765	488	24	175	914	137	870	3.23e-66	243
Msa0011500	AT4G27220.2	28.889	765	488	24	175	914	145	878	3.71e-66	243
Msa0011500	AT5G05400.1	25.858	874	523	30	30	841	26	836	5.04e-50	192
Msa0011500	AT4G26090.1	25.125	800	485	25	108	881	113	824	6.50e-49	189
Msa0011500	AT4G10780.2	28.816	642	395	21	23	626	26	643	2.60e-47	184
Msa0011500	AT4G10780.1	28.816	642	395	21	23	626	26	643	2.86e-47	184
Msa0011500	AT1G12210.1	24.883	852	571	27	23	841	26	841	2.35e-45	178
Msa0011500	AT1G61190.2	27.243	602	401	17	24	599	26	616	3.85e-45	177
Msa0011500	AT1G61190.3	27.243	602	401	17	24	599	26	616	3.85e-45	177

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Find 242 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTGGGGATTCCATT+TGG	0.399668	1_1:+17362331	Msa0011500:CDS
AAAACATTGATGCTCAAACT+TGG	0.484325	1_1:+17363693	Msa0011500:CDS
AAAACTTTCAACCAAAGTAG+AGG	0.580217	1_1:-17364970	None:intergenic
AAAAGATGTTCTAAATTGGT+TGG	0.445497	1_1:+17361727	Msa0011500:CDS
AAACTCAATGGTTTCTATGC+TGG	0.468689	1_1:+17365911	Msa0011500:CDS
AAACTTCAATCTTAGAAATG+TGG	0.534190	1_1:-17364085	None:intergenic
AAACTTTCAACCAAAGTAGA+GGG	0.546650	1_1:-17364969	None:intergenic
AAAGATGTTGTTAAAGTTCA+AGG	0.361949	1_1:+17361887	Msa0011500:CDS
AAATAGCTATTGGAGATGTA+TGG	0.413958	1_1:+17363640	Msa0011500:CDS
AAATTGGAGGAGTTGTACAT+GGG	0.691550	1_1:+17363447	Msa0011500:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCACTCTTCATTTCAAAGAT+TGG	+	chr1_1:17360602-17360621	Msa0011500:five_prime_UTR	30.0%
AGTTAATGAATGTTGCAGAT+CGG	-	chr1_1:17361002-17361021	None:intergenic	30.0%
TTAACTTCTTATGTGACTAC+GGG	+	chr1_1:17361016-17361035	Msa0011500:intron	30.0%
TTGAGTTCAGAGTAAAACAA+AGG	+	chr1_1:17361110-17361129	Msa0011500:intron	30.0%
CAAAGGATCATAATTATGCA+AGG	+	chr1_1:17361127-17361146	Msa0011500:intron	30.0%
ACACATTCTACCTTTATGAT+TGG	+	chr1_1:17361351-17361370	Msa0011500:intron	30.0%
AGGTCATAAAAAAAGCGAAT+TGG	+	chr1_1:17361762-17361781	Msa0011500:CDS	30.0%
GTTGTTAAAGTTCAAGGAAA+AGG	+	chr1_1:17361893-17361912	Msa0011500:CDS	30.0%
CCATTATGTTCATTACCAAA+TGG	-	chr1_1:17362349-17362368	None:intergenic	30.0%
TTATGAATGAAAATGAGGCA+TGG	+	chr1_1:17362452-17362471	Msa0011500:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	17360378	17366030	17360378	ID=Msa0011500;Name=Msa0011500
chr1_1	mRNA	17360378	17366030	17360378	ID=Msa0011500-mRNA-1;Parent=Msa0011500;Name=Msa0011500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=356\|1\|0.6\|1\|0.75\|0.8\|5\|0\|1305
chr1_1	exon	17360378	17360641	17360378	ID=Msa0011500-mRNA-1:exon:6288;Parent=Msa0011500-mRNA-1
chr1_1	exon	17360747	17360794	17360747	ID=Msa0011500-mRNA-1:exon:6289;Parent=Msa0011500-mRNA-1
chr1_1	exon	17361489	17364331	17361489	ID=Msa0011500-mRNA-1:exon:6290;Parent=Msa0011500-mRNA-1
chr1_1	exon	17364831	17365079	17364831	ID=Msa0011500-mRNA-1:exon:6291;Parent=Msa0011500-mRNA-1
chr1_1	exon	17365161	17366030	17365161	ID=Msa0011500-mRNA-1:exon:6292;Parent=Msa0011500-mRNA-1
chr1_1	five_prime_UTR	17360378	17360641	17360378	ID=Msa0011500-mRNA-1:five_prime_utr;Parent=Msa0011500-mRNA-1
chr1_1	five_prime_UTR	17360747	17360794	17360747	ID=Msa0011500-mRNA-1:five_prime_utr;Parent=Msa0011500-mRNA-1
chr1_1	five_prime_UTR	17361489	17361532	17361489	ID=Msa0011500-mRNA-1:five_prime_utr;Parent=Msa0011500-mRNA-1
chr1_1	CDS	17361533	17364331	17361533	ID=Msa0011500-mRNA-1:cds;Parent=Msa0011500-mRNA-1
chr1_1	CDS	17364831	17365079	17364831	ID=Msa0011500-mRNA-1:cds;Parent=Msa0011500-mRNA-1
chr1_1	CDS	17365161	17366030	17365161	ID=Msa0011500-mRNA-1:cds;Parent=Msa0011500-mRNA-1

Gene Sequence

>Msa0011500

ATGGAAATTTTAACTTCTGTTGTTGGAAAAATAGCAGAATATACCATTGTGCCTATTGGACGTCAAGCAAGTTACTTGATATTCTACAAAGGTAACTTCAAGACGTTAAAGGATCACGTTGAAAACCTTGAGGCTGCAAGAGAAAGAGTGCTCCATTTGGTTGAAAGAGAAAGGGGAAATGGTAATGAAATTGAAAAAGATGTTCTAAATTGGTTGGAGAAAGTGAACGAGGTCATAAAAAAAGCGAATTGGCTTCAAAATGATCCTCGTCGTCCCAATGTTAGTTGCTCAGCATTGTCGTTCCCCAACTTGGTTTTACGTCATCAACTAAGTAGGAAAGCCACAAAAATTGCAAAAGATGTTGTTAAAGTTCAAGGAAAAGGGATTTTTGATCAAGTTGGTCACCTTCCCCCTCTAGATATAGTAGCCTCCTCCTCAACAATAGATGGTGAAATGTATGACACAAGGGAGTCGCTTAAGGAGGACATTGTGAAGGCTTTAGCAGATTCTACTTCATGCAGCATTGGGGTCTATGGGTTGGGTGGGGTGGGTAAGACCACTCTGGTGCAGAAAGTTGCTCAAACAGCCATGGAACATAAGTTGTTCGATAGCGTGGTTATGACTAAAGTATCAAATAATCCAGACATTAAAAGAATTCAAGAGGAGATTGCAGACTTCTTGGGTCTGCGATTCAAAGAGGAGACTATTCTTGGCAGAGAACATCGCCTAAGACAAAGAATCAAGATGGAGAAAAGTATCCTTATCATTCTAGATAACATATGGACCATACTTGATTTGAAAACAGTGGGGATTCCATTTGGTAATGAACATAATGGTTGCAAATTGTTGATGACAAGTAGAAATCAAGATGTGTTGCTTCAAATGGATGTGCCAATGGATTTCACTTTCAAAGTTGAACTTATGAATGAAAATGAGGCATGGATCTTGTTTCAATCTATGGCAGGAGATGCGGTTAAAGATAGCAATTTGAAAGATATACCATATCAAGTGGCCCAAAAATGTGAAGGTTTGCCTCTTAGGGTAGTGACAGTAGCACGTGCAATGAAAAATAAGAGGGATGTCCAATCTTGGAAAGATGCATTGAGGAAATTACAAAGTAATGATCATACAGAGATGGATGCAATAACTTATTCTGCTTTGGAATTGAGTTACAAATCATTGGAGAGGGATGAAATGAGGGATTTGTTCTTGCTTTTTGCATTACTGCTAGGTAATGATATAGAGTACTTTCTCAAAGTTGCAATGGGGTTGGACATATTGAAGCATGTTAATGCCATAGATGATGCAAGAAACAGACTTTACACAATAATCAAATCTTTGGAGGCCACTTGTCTTTTGCTTGAAGTTAAAATAGGTGGAAAGATCCAAATGCATGATTTTGTTCGTGATTTTGCTATCTTCATAGCACGTGGGGACAAACATGTACTTCTAAGAAAACAAGCTGATGAGGAATTGCCAACCAATGATTTTCTAAAAAGGTGCACGCAAATCGTTCTGGATAGATGCCGTATGCACGAGCTTCCTCAAACGATTTATTGTCCAAACATTAAGTTTTTCTTCTTGTACAATGTGAACCGTTCTTTAGAAATCCCTGATACTTTTTTTGAGGGTATGAGAAGCCTTAGAGTGCTAAATTTAACACACTTGAACTTGTTATCATTACCCACATCGTTTAGGTTACTAACAGACCTTCAAACATTGTGTTTGGATCAATGCATTCTGGAAAATATGGGTGCACTAGAAGCTTTGCAAAATTTAGAAATTCTTTCCCTTTGTAAATCTTCAATAATCAAGTTGCCAAGAGTAATAGGGAGATTGATTCAATTGAGAATGCTTGATTTGAGTCATTCAGGAATAGAGGTAGTCCCACCCAACATCATATCAAGCTTGACTAAATTGGAGGAGTTGTACATGGGAAATACCTCTATTACTTGGGAAGATGTGAATTCAACGGTTCTAAATGAAAATGCTAGTCTTGCTGAGCTTCGAAAATTACCCAACTTGACAGTTCTAGAATTACAAATTCGTGAGACTTGGATGTTGCCAAGGGACTTGCAATTAGTGTTTGAGAAGCTTGAAAGATATAAAATAGCTATTGGAGATGTATGGGACTGGTCTGACATTATGCATAAACCCTTAAAAACATTGATGCTCAAACTTGGTACTAATATACATTTGGAGCATGGACTTAAAGTATTGATTAAAGGTGTTGAGAATTTGTACTTGGATGATGTAGATGGAATTCAAAATGTGCTTTATCAACTAAATGGGAAAGGATTTCCATTTCTGAAACATCTCCACGTCCAAAATAATGCACACTTGAAGCAAATTGTGGACTGTAAAGAGAGGAATCAAATCAATGTGTCCTTTCCCTCCTTGGAAACACTTGTACTTCTTAATCTTATAAACTTGGAGCATATTTGTCATGGTCAACCTTCAATTACTTCTTTTGGAAATCTCAGTGTTATCAAAGTCAAAAACTGCGTCCAATTAAAATATCTATTCTCCTATGGAGTGGTTAAACAACTTTCCCACATTTCTAAGATTGAAGTTTGTGAGTGCAATTCTATGAAGGAGATATTGTTCGGAGACAACAATTCAAGTGCAAACAATGATATCACTGATGAAAAAATTGAGTTTCTTCTATTGCGTTCTTTGACTTTAGAACATTTGGAAACACTTGATAATTTCGCCTCTGATTATTTATCGCATCTTAGAAGTAAGGAAAAGTATCAAGGTCTAGAGCCTTACGCTTCTACACCATTTTTCAATGCTCAGGTTGCATTTCCTAATTTGGATACCCTTAAATTGAGCTCACTTCTCAATTTGAATAAAGTTTGGGATGAGAATCATCAATCAATGTGCAACTTGACTAGCTTGATTGTGGATAATTGTGGTGGATTGAAGTATTTATTCCCCTCTACTTTGGTTGAAAGTTTTATGAACCTCAAACATCTTGAAATAAGTAATTGCTCTTTGATGGAGGAGATAATAACTAAAGATGACAGAAACAATGCATTGGAAGAGGTTCATTTTTTGAAATTAGAGAAAGTCATATTGAAGGATATGGACAACTTGAAGACAATATGGCATTACCAATTTAAAACATTGAAGATGTTGCAAGTGAACAATTGCAAGAAAATTGTGGTGGTTTTTCCTTCTTCAGTGCAAAACACATATAATGAGCTTGAGAAGTTGGAGGTTACAAATTGTGATTTAGTTGAAGAGATATTTGAATTGACTTTCAATGAAAATAACAGTGTAGAGGATACATCACATTTGATAGAGGTTATTATAGTTGGATTGTCGAATTTGAAAAAGATATGGAGTAGAGATCCTGAAGGAATTATTAGTTTTCAAGCTATTAATTATGTAATCATAAATGATTGTCCAAGCTTGAAGTATCTATTCCCACTCTCTGTAGCCACTCGTTGCTCACATCTCAAGGAACTTGGTATAAAAAATTGTGAAAACATGGAGGAAATTTTTGCAGAGGAGAAACTTGGTATAAAAAATTGTGAAAACATGGAGGAAATTTTTGCAGAGGAGAAACTTGGTATAAAAAATTGTGAAAATATGGAGGAAATTGTTGCAGAGGAGAAACTTGGTATAAAAAATTGTGAAAACATGGAGGAAACTGTTGCAGAGGAGAAACTTGGTATAATAAATTGTGAAAATGTGCAGGAAATTGTTGCAGAGGAGAAAGAATCTAGCATGAATGCAACTCCCATATTTGAGTTTAATCAACTAAGTACTTTATTTCTTTGGCACTTACCTAAACTCAATGGTTTCTATGCTGGAAGTCATACTCTGCTGTGTCCATCTTTGAGGATAAATAGTGTTTTTGAATGTACAAAGTTGAATTTGTTCAGAACTCCAGGCGCAAGAAGCATGTGA

Protein sequence

>Msa0011500

MEILTSVVGKIAEYTIVPIGRQASYLIFYKGNFKTLKDHVENLEAARERVLHLVERERGNGNEIEKDVLNWLEKVNEVIKKANWLQNDPRRPNVSCSALSFPNLVLRHQLSRKATKIAKDVVKVQGKGIFDQVGHLPPLDIVASSSTIDGEMYDTRESLKEDIVKALADSTSCSIGVYGLGGVGKTTLVQKVAQTAMEHKLFDSVVMTKVSNNPDIKRIQEEIADFLGLRFKEETILGREHRLRQRIKMEKSILIILDNIWTILDLKTVGIPFGNEHNGCKLLMTSRNQDVLLQMDVPMDFTFKVELMNENEAWILFQSMAGDAVKDSNLKDIPYQVAQKCEGLPLRVVTVARAMKNKRDVQSWKDALRKLQSNDHTEMDAITYSALELSYKSLERDEMRDLFLLFALLLGNDIEYFLKVAMGLDILKHVNAIDDARNRLYTIIKSLEATCLLLEVKIGGKIQMHDFVRDFAIFIARGDKHVLLRKQADEELPTNDFLKRCTQIVLDRCRMHELPQTIYCPNIKFFFLYNVNRSLEIPDTFFEGMRSLRVLNLTHLNLLSLPTSFRLLTDLQTLCLDQCILENMGALEALQNLEILSLCKSSIIKLPRVIGRLIQLRMLDLSHSGIEVVPPNIISSLTKLEELYMGNTSITWEDVNSTVLNENASLAELRKLPNLTVLELQIRETWMLPRDLQLVFEKLERYKIAIGDVWDWSDIMHKPLKTLMLKLGTNIHLEHGLKVLIKGVENLYLDDVDGIQNVLYQLNGKGFPFLKHLHVQNNAHLKQIVDCKERNQINVSFPSLETLVLLNLINLEHICHGQPSITSFGNLSVIKVKNCVQLKYLFSYGVVKQLSHISKIEVCECNSMKEILFGDNNSSANNDITDEKIEFLLLRSLTLEHLETLDNFASDYLSHLRSKEKYQGLEPYASTPFFNAQVAFPNLDTLKLSSLLNLNKVWDENHQSMCNLTSLIVDNCGGLKYLFPSTLVESFMNLKHLEISNCSLMEEIITKDDRNNALEEVHFLKLEKVILKDMDNLKTIWHYQFKTLKMLQVNNCKKIVVVFPSSVQNTYNELEKLEVTNCDLVEEIFELTFNENNSVEDTSHLIEVIIVGLSNLKKIWSRDPEGIISFQAINYVIINDCPSLKYLFPLSVATRCSHLKELGIKNCENMEEIFAEEKLGIKNCENMEEIFAEEKLGIKNCENMEEIVAEEKLGIKNCENMEETVAEEKLGIINCENVQEIVAEEKESSMNATPIFEFNQLSTLFLWHLPKLNGFYAGSHTLLCPSLRINSVFECTKLNLFRTPGARSM*