AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1176260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176260 MtrunA17_Chr8g0346421 99.444 180 1 0 1 180 1 180 1.19e-132 370
Msa1176260 MtrunA17_Chr7g0275991 89.375 160 17 0 21 180 15 174 5.25e-105 300
Msa1176260 MtrunA17_Chr8g0381841 74.847 163 41 0 18 180 9 171 5.36e-89 259
Msa1176260 MtrunA17_Chr3g0123821 73.620 163 43 0 18 180 8 170 1.54e-87 256
Msa1176260 MtrunA17_Chr1g0174281 73.620 163 43 0 18 180 7 169 2.84e-87 255
Msa1176260 MtrunA17_Chr7g0231131 74.375 160 41 0 18 177 7 166 9.95e-86 251
Msa1176260 MtrunA17_Chr2g0276941 67.284 162 53 0 20 181 9 170 6.34e-80 236
Msa1176260 MtrunA17_Chr3g0112681 64.848 165 58 0 17 181 3 167 5.78e-79 234
Msa1176260 MtrunA17_Chr4g0032201 63.636 165 60 0 17 181 3 167 3.09e-77 229
Msa1176260 MtrunA17_Chr2g0319951 62.195 164 62 0 17 180 4 167 6.45e-76 226
Msa1176260 MtrunA17_Chr2g0283131 62.805 164 61 0 17 180 4 167 1.62e-74 223
Msa1176260 MtrunA17_Chr2g0315551 62.805 164 61 0 17 180 4 167 3.23e-74 222
Msa1176260 MtrunA17_Chr4g0046261 62.195 164 62 0 17 180 4 167 4.11e-74 222
Msa1176260 MtrunA17_Chr8g0351861 63.750 160 58 0 21 180 11 170 3.75e-73 219
Msa1176260 MtrunA17_Chr4g0040781 61.585 164 63 0 17 180 4 167 6.10e-73 219
Msa1176260 MtrunA17_Chr1g0189361 63.190 163 59 1 20 181 7 169 3.09e-72 217
Msa1176260 MtrunA17_Chr2g0325091 61.111 162 63 0 19 180 4 165 1.52e-70 213
Msa1176260 MtrunA17_Chr7g0214241 59.494 158 64 0 25 182 14 171 4.67e-69 209
Msa1176260 MtrunA17_Chr7g0234201 58.861 158 65 0 25 182 12 169 1.39e-66 202
Msa1176260 MtrunA17_Chr6g0482721 57.764 161 68 0 20 180 6 166 1.10e-62 192
Msa1176260 MtrunA17_Chr8g0392931 59.259 162 66 0 16 177 4 165 2.30e-62 192
Msa1176260 MtrunA17_Chr8g0349711 52.564 156 74 0 25 180 5 160 1.33e-56 177
Msa1176260 MtrunA17_Chr2g0290891 52.564 156 74 0 25 180 5 160 1.27e-55 174
Msa1176260 MtrunA17_Chr6g0458081 50.955 157 77 0 24 180 4 160 3.87e-54 171
Msa1176260 MtrunA17_Chr8g0335471 50.000 162 81 0 19 180 1 162 1.78e-52 166
Msa1176260 MtrunA17_Chr4g0055651 49.383 162 82 0 19 180 1 162 2.61e-52 166
Msa1176260 MtrunA17_Chr2g0276931 50.318 157 78 0 24 180 7 163 5.46e-52 165
Msa1176260 MtrunA17_Chr7g0250531 48.765 162 83 0 19 180 1 162 1.12e-50 162
Msa1176260 MtrunA17_Chr8g0349681 51.282 156 76 0 25 180 383 538 2.61e-50 170
Msa1176260 MtrunA17_Chr8g0349681 50.000 156 78 0 25 180 12 167 2.32e-49 167
Msa1176260 MtrunA17_Chr8g0349681 48.718 156 80 0 25 180 174 329 2.38e-48 165
Msa1176260 MtrunA17_Chr1g0182321 48.387 155 79 1 24 177 13 167 4.65e-50 160
Msa1176260 MtrunA17_Chr7g0263071 48.387 155 79 1 24 177 13 167 7.92e-50 160
Msa1176260 MtrunA17_Chr4g0030911 48.387 155 79 1 24 177 13 167 9.59e-50 160
Msa1176260 MtrunA17_Chr1g0212521 48.387 155 79 1 24 177 13 167 1.05e-49 159
Msa1176260 MtrunA17_Chr1g0182301 47.742 155 80 1 24 177 13 167 1.79e-49 159
Msa1176260 MtrunA17_Chr8g0384311 45.122 164 87 3 20 181 7 169 1.60e-45 149
Msa1176260 MtrunA17_Chr1g0159481 46.296 162 84 3 22 181 13 173 5.23e-45 147
Msa1176260 MtrunA17_Chr3g0109721 46.980 149 79 0 28 176 12 160 5.60e-45 147
Msa1176260 MtrunA17_Chr5g0433561 46.980 149 79 0 28 176 12 160 7.34e-45 147
Msa1176260 MtrunA17_Chr2g0327911 42.945 163 91 2 20 180 9 171 2.54e-44 146
Msa1176260 MtrunA17_Chr1g0199331 47.333 150 78 1 28 176 33 182 2.43e-43 143
Msa1176260 MtrunA17_Chr3g0130271 43.976 166 89 4 15 177 1 165 8.03e-42 139
Msa1176260 MtrunA17_Chr3g0123971 42.384 151 87 0 27 177 10 160 8.73e-42 139
Msa1176260 MtrunA17_Chr7g0265001 46.154 156 82 2 24 177 14 169 1.00e-41 139
Msa1176260 MtrunA17_Chr8g0390561 44.966 149 82 0 28 176 11 159 1.17e-41 139
Msa1176260 MtrunA17_Chr5g0400131 40.789 152 90 0 27 178 10 161 1.18e-40 136
Msa1176260 MtrunA17_Chr8g0382221 41.722 151 88 0 27 177 10 160 1.42e-40 136
Msa1176260 MtrunA17_Chr4g0055081 38.816 152 93 0 27 178 10 161 1.12e-39 134
Msa1176260 MtrunA17_Chr1g0180291 44.375 160 86 3 24 181 12 170 1.25e-39 134
Msa1176260 MtrunA17_Chr1g0197331 45.223 157 83 3 24 177 13 169 2.82e-36 125
Msa1176260 MtrunA17_Chr4g0034871 36.471 170 101 3 19 181 1 170 1.04e-31 113
Msa1176260 MtrunA17_Chr8g0383261 37.037 162 95 3 26 180 12 173 1.03e-30 111
Msa1176260 MtrunA17_Chr6g0466301 37.654 162 94 3 26 180 8 169 1.22e-30 110
Msa1176260 MtrunA17_Chr6g0465491 37.654 162 94 3 26 180 8 169 1.22e-30 110
Msa1176260 MtrunA17_Chr1g0201121 37.037 162 95 3 26 180 8 169 3.75e-30 109
Msa1176260 MtrunA17_Chr2g0331691 36.585 164 97 3 26 182 10 173 4.63e-30 109
Msa1176260 MtrunA17_Chr4g0004661 35.673 171 103 3 19 182 57 227 2.81e-29 108
Msa1176260 MtrunA17_Chr4g0046211 38.655 119 70 3 28 145 8 124 4.23e-21 84.3
Msa1176260 MtrunA17_Chr3g0138121 32.099 162 106 3 20 180 6 164 8.58e-21 85.5
Msa1176260 MtrunA17_Chr3g0138101 33.962 159 101 4 20 177 6 161 8.67e-21 85.5
Msa1176260 MtrunA17_Chr3g0138111 32.099 162 106 3 20 180 6 164 9.94e-21 85.5
Msa1176260 MtrunA17_Chr4g0037021 39.496 119 69 3 28 145 8 124 1.39e-20 84.3
Msa1176260 MtrunA17_Chr5g0405791 38.655 119 70 3 28 145 8 124 1.70e-20 84.3
Msa1176260 MtrunA17_Chr6g0466161 33.793 145 89 3 43 180 7 151 4.56e-20 83.6
Msa1176260 MtrunA17_Chr6g0465471 33.793 145 89 3 43 180 7 151 4.91e-20 83.2
Msa1176260 MtrunA17_Chr8g0371501 38.655 119 70 3 28 145 8 124 4.95e-20 83.2
Msa1176260 MtrunA17_Chr2g0325101 38.462 117 69 3 28 143 8 122 5.39e-20 82.8
Msa1176260 MtrunA17_Chr6g0486041 38.971 136 73 5 28 162 8 134 7.09e-20 82.8
Msa1176260 MtrunA17_Chr3g0117931 35.152 165 93 6 28 180 10 172 1.07e-19 82.4
Msa1176260 MtrunA17_Chr6g0466431 36.364 99 54 1 26 124 8 97 2.45e-16 70.9
Msa1176260 MtrunA17_Chr6g0465611 36.364 99 54 1 26 124 8 97 2.45e-16 70.9
Msa1176260 MtrunA17_Chr1g0178291 33.562 146 90 3 31 176 433 571 1.27e-13 68.2
Msa1176260 MtrunA17_Chr2g0331841 43.836 73 40 1 95 166 2 74 6.08e-12 59.3
Msa1176260 MtrunA17_Chr5g0443631 26.404 178 118 4 5 175 88 259 3.85e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176260 AT1G01200.1 77.778 180 38 2 2 180 5 183 2.01e-97 282
Msa1176260 AT3G12160.1 74.847 163 41 0 18 180 7 169 1.14e-88 259
Msa1176260 AT5G65270.1 73.006 163 44 0 18 180 9 171 1.29e-88 259
Msa1176260 AT5G47960.1 73.653 167 44 0 14 180 3 169 4.70e-88 258
Msa1176260 AT4G39990.1 72.500 160 44 0 22 181 13 172 9.22e-87 254
Msa1176260 AT1G09630.1 66.049 162 55 0 20 181 6 167 1.55e-79 236
Msa1176260 AT5G59150.1 66.061 165 56 0 17 181 3 167 1.49e-78 233
Msa1176260 AT3G46830.1 64.671 167 59 0 15 181 1 167 5.34e-78 232
Msa1176260 AT3G46830.2 64.671 167 59 0 15 181 1 167 5.34e-78 232
Msa1176260 AT1G07410.1 64.417 163 58 0 19 181 5 167 3.51e-77 230
Msa1176260 AT1G16920.1 64.024 164 59 0 17 180 4 167 5.16e-76 227
Msa1176260 AT4G18800.1 63.415 164 60 0 17 180 4 167 6.88e-75 224
Msa1176260 AT5G45750.1 63.415 164 60 0 17 180 4 167 2.37e-74 223
Msa1176260 AT4G18430.1 62.195 164 62 0 17 180 4 167 6.98e-74 221
Msa1176260 AT5G60860.1 62.195 164 62 0 17 180 4 167 1.27e-73 221
Msa1176260 AT1G06400.1 61.585 164 63 0 17 180 4 167 2.65e-73 220
Msa1176260 AT3G15060.1 60.976 164 64 0 17 180 4 167 2.30e-72 218
Msa1176260 AT2G33870.1 59.756 164 66 0 17 180 4 167 7.40e-72 216
Msa1176260 AT1G28550.1 60.366 164 65 0 17 180 4 167 1.52e-71 216
Msa1176260 AT1G05810.2 55.932 177 78 0 6 182 38 214 3.77e-71 216
Msa1176260 AT5G47520.1 63.694 157 57 0 24 180 12 168 1.75e-70 213
Msa1176260 AT1G05810.1 58.788 165 68 0 18 182 4 168 2.69e-70 213
Msa1176260 AT1G73640.1 62.112 161 61 0 20 180 7 167 2.25e-68 208
Msa1176260 AT3G07410.1 60.377 159 63 0 24 182 10 168 5.15e-68 206
Msa1176260 AT2G43130.1 56.364 165 72 0 18 182 4 168 5.76e-68 206
Msa1176260 AT2G31680.1 58.491 159 66 0 24 182 10 168 9.78e-68 206
Msa1176260 AT1G18200.1 58.385 161 67 0 20 180 7 167 5.00e-64 197
Msa1176260 AT4G35860.1 52.229 157 75 0 24 180 4 160 4.11e-56 176
Msa1176260 AT4G17170.1 52.564 156 74 0 25 180 5 160 1.47e-55 175
Msa1176260 AT4G17160.1 52.564 156 74 0 25 180 5 160 1.47e-54 172
Msa1176260 AT1G02130.1 50.000 162 81 0 19 180 1 162 1.33e-53 169
Msa1176260 AT3G11730.1 47.531 162 85 0 19 180 1 162 8.27e-52 165
Msa1176260 AT5G47200.1 48.765 162 83 0 19 180 1 162 3.91e-51 163
Msa1176260 AT4G17530.1 48.765 162 83 0 19 180 1 162 6.38e-51 162
Msa1176260 AT5G59150.2 64.912 114 40 0 68 181 3 116 1.41e-49 158
Msa1176260 AT3G46060.2 48.387 155 79 1 24 177 13 167 1.51e-49 159
Msa1176260 AT3G46060.3 48.387 155 79 1 24 177 13 167 1.51e-49 159
Msa1176260 AT3G46060.1 48.387 155 79 1 24 177 13 167 1.51e-49 159
Msa1176260 AT3G53610.2 48.387 155 79 1 24 177 13 167 1.51e-49 159
Msa1176260 AT3G53610.3 48.387 155 79 1 24 177 13 167 1.51e-49 159
Msa1176260 AT3G53610.1 48.387 155 79 1 24 177 13 167 1.51e-49 159
Msa1176260 AT5G59840.1 47.742 155 80 1 24 177 13 167 7.48e-49 158
Msa1176260 AT3G09900.1 49.677 155 77 1 24 177 13 167 1.52e-47 154
Msa1176260 AT4G19640.1 46.667 150 80 0 28 177 12 161 2.75e-47 153
Msa1176260 AT5G03520.1 49.032 155 78 1 24 177 13 167 2.75e-47 154
Msa1176260 AT3G54840.1 50.000 150 74 1 28 176 35 184 3.96e-46 150
Msa1176260 AT3G54840.2 50.000 150 74 1 28 176 35 184 4.54e-46 150
Msa1176260 AT3G54840.3 49.664 149 74 1 29 176 2 150 9.98e-46 148
Msa1176260 AT5G45130.1 46.000 150 81 0 28 177 12 161 1.01e-45 149
Msa1176260 AT5G45130.2 45.946 148 80 0 30 177 22 169 1.83e-44 146
Msa1176260 AT1G43890.3 46.875 160 82 3 20 177 7 165 1.10e-43 144
Msa1176260 AT1G43890.1 46.875 160 82 3 20 177 7 165 1.10e-43 144
Msa1176260 AT1G43890.2 46.875 160 82 3 20 177 7 165 1.10e-43 144
Msa1176260 AT5G10260.1 42.384 151 87 0 27 177 10 160 3.00e-42 140
Msa1176260 AT4G35860.2 54.867 113 51 0 68 180 2 114 5.14e-42 139
Msa1176260 AT2G44610.1 40.789 152 90 0 27 178 10 161 9.16e-41 137
Msa1176260 AT2G22290.1 40.397 151 90 0 27 177 10 160 5.50e-39 132
Msa1176260 AT5G03530.2 44.872 156 83 3 24 177 11 165 4.14e-38 130
Msa1176260 AT5G03530.1 44.872 156 83 3 24 177 11 165 4.14e-38 130
Msa1176260 AT5G64990.1 40.397 151 90 0 27 177 8 158 5.97e-38 130
Msa1176260 AT4G39890.1 38.562 153 93 1 27 178 10 162 1.21e-37 129
Msa1176260 AT4G19640.2 44.800 125 69 0 28 152 12 136 2.71e-37 126
Msa1176260 AT4G19640.3 43.511 131 74 0 28 158 12 142 7.26e-37 126
Msa1176260 AT5G03520.2 48.739 119 60 1 61 178 40 158 1.72e-36 126
Msa1176260 AT5G64990.2 38.608 158 90 1 27 177 8 165 3.50e-35 123
Msa1176260 AT3G09910.5 43.125 160 88 3 24 181 11 169 4.97e-35 122
Msa1176260 AT3G09910.4 43.125 160 88 3 24 181 11 169 4.97e-35 122
Msa1176260 AT3G09910.3 43.396 159 87 3 24 180 11 168 5.35e-35 122
Msa1176260 AT3G09910.1 43.396 159 87 3 24 180 11 168 5.35e-35 122
Msa1176260 AT3G09910.2 43.396 159 87 3 24 180 11 168 5.35e-35 122
Msa1176260 AT3G18820.1 36.842 171 101 3 19 182 1 171 9.69e-32 114
Msa1176260 AT1G52280.1 37.791 172 98 4 19 182 1 171 1.10e-31 114
Msa1176260 AT3G16100.1 37.209 172 99 4 19 182 1 171 3.47e-30 110
Msa1176260 AT2G21880.1 36.420 162 96 3 26 180 9 170 6.25e-30 109
Msa1176260 AT4G09720.1 37.654 162 94 3 26 180 8 169 9.93e-30 108
Msa1176260 AT1G49300.2 36.095 169 101 3 19 180 1 169 1.07e-29 108
Msa1176260 AT1G49300.1 36.095 169 101 3 19 180 1 169 1.07e-29 108
Msa1176260 AT1G22740.1 34.911 169 103 3 19 180 1 169 1.31e-29 108
Msa1176260 AT4G09720.4 36.527 167 94 3 26 180 8 174 6.04e-29 107
Msa1176260 AT4G09720.3 35.260 173 94 3 26 180 8 180 5.21e-28 104
Msa1176260 AT5G39620.1 34.783 161 98 3 27 180 6 166 6.21e-26 99.0
Msa1176260 AT5G55080.1 33.113 151 98 2 27 177 14 161 8.18e-24 94.0
Msa1176260 AT2G44690.1 41.935 124 69 3 28 150 20 141 2.76e-23 92.0
Msa1176260 AT5G46025.1 50.549 91 44 1 88 177 6 96 2.91e-22 87.0
Msa1176260 AT2G21880.4 36.364 132 77 3 56 180 14 145 7.44e-22 87.8
Msa1176260 AT2G21880.3 36.364 132 77 3 56 180 14 145 7.44e-22 87.8
Msa1176260 AT4G09720.6 37.879 132 75 3 56 180 4 135 5.71e-21 85.1
Msa1176260 AT4G09720.5 37.879 132 75 3 56 180 4 135 5.71e-21 85.1
Msa1176260 AT4G09720.2 37.879 132 75 3 56 180 4 135 5.71e-21 85.1
Msa1176260 AT4G35020.1 38.971 136 73 4 28 162 8 134 1.04e-20 85.1
Msa1176260 AT4G35020.2 38.971 136 73 4 28 162 8 134 1.04e-20 85.1
Msa1176260 AT4G35020.3 38.971 136 73 4 28 162 8 134 1.04e-20 85.1
Msa1176260 AT5G20020.1 33.333 162 104 4 20 180 6 164 1.08e-20 85.9
Msa1176260 AT5G20010.1 32.099 162 106 3 20 180 6 164 1.37e-20 85.5
Msa1176260 AT5G55190.1 33.962 159 101 4 20 177 6 161 1.43e-20 85.5
Msa1176260 AT1G75840.1 36.957 138 82 4 28 162 8 143 2.09e-20 84.3
Msa1176260 AT2G21880.2 31.481 162 96 4 26 180 9 162 3.69e-20 84.0
Msa1176260 AT1G20090.1 36.232 138 83 4 28 162 7 142 3.78e-20 83.6
Msa1176260 AT3G51300.1 38.655 119 70 3 28 145 8 124 7.59e-20 82.8
Msa1176260 AT2G17800.2 38.655 119 70 3 28 145 8 124 9.09e-20 82.8
Msa1176260 AT2G17800.1 38.655 119 70 3 28 145 8 124 9.09e-20 82.8
Msa1176260 AT4G35950.1 38.655 119 70 3 28 145 8 124 9.68e-20 82.8
Msa1176260 AT4G28950.1 39.167 120 70 3 27 145 7 124 1.76e-19 82.4
Msa1176260 AT4G35020.4 39.474 114 66 3 28 140 8 119 4.13e-19 79.7
Msa1176260 AT4G35020.5 39.474 114 66 3 28 140 8 119 4.13e-19 79.7
Msa1176260 AT5G45970.1 37.815 119 71 3 28 145 8 124 1.92e-18 79.3
Msa1176260 AT5G62880.2 36.496 137 77 5 28 163 10 137 6.65e-18 77.8
Msa1176260 AT3G48040.2 38.462 117 69 3 28 143 10 124 9.28e-18 77.0
Msa1176260 AT5G62880.1 36.496 137 77 5 28 163 10 137 1.13e-17 77.4
Msa1176260 AT3G48040.1 38.462 117 69 3 28 143 10 124 1.30e-17 77.4
Msa1176260 AT3G21700.3 25.568 176 117 5 8 175 93 262 4.25e-12 63.5
Msa1176260 AT4G08190.1 50.794 63 28 1 117 179 67 126 8.87e-12 60.1
Msa1176260 AT3G51290.2 39.241 79 46 2 68 145 648 725 3.44e-11 61.6
Msa1176260 AT4G07524.1 63.636 33 12 0 50 82 2 34 7.62e-11 55.8

Find 71 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATAGATTATGTGTTTA+AGG 0.176548 8_1:-8279987 Msa1176260:CDS
TAATAGTGTAGTTTCTAAAA+AGG 0.249947 8_1:-8277960 Msa1176260:three_prime_UTR
GATAACAACTATTCAGTTCT+TGG 0.263198 8_1:+8277682 None:intergenic
ACTAGGACTGTCACTATTAA+TGG 0.266282 8_1:-8279857 Msa1176260:CDS
GTGAAGGGGATTGCACTAAA+AGG 0.273863 8_1:-8277920 Msa1176260:three_prime_UTR
TCAGAGACTTCAGCTCTTAC+TGG 0.284192 8_1:-8278030 Msa1176260:CDS
CATGTTAAAATACAATAATT+TGG 0.299003 8_1:+8280137 None:intergenic
TGAGAGATATGAACCTTTCT+TGG 0.302562 8_1:+8279798 None:intergenic
TCTAAGATTGATGTAATTTC+AGG 0.313382 8_1:-8277896 Msa1176260:three_prime_UTR
CTAAATGTTGGTCGTACCTT+AGG 0.320722 8_1:+8280165 None:intergenic
TAATAGTGACAGTCCTAGTT+TGG 0.324166 8_1:+8279861 None:intergenic
GCATACTATAGAGGTGCATT+AGG 0.336401 8_1:-8278246 Msa1176260:CDS
GGTGAGAAGAAGCAAGAAAA+TGG 0.343797 8_1:-8280040 Msa1176260:CDS
TTTGACTCAAAGTCAACTAT+TGG 0.354196 8_1:-8279893 Msa1176260:CDS
TTTAATAGTGGTAAAAGAAT+AGG 0.361252 8_1:+8280264 None:intergenic
CATACTATAGAGGTGCATTA+GGG 0.364580 8_1:-8278245 Msa1176260:CDS
AAGTAATTAAAGCTCAGATC+TGG 0.376078 8_1:-8279832 Msa1176260:CDS
AAGACCAGATGAAATCAATT+AGG 0.387624 8_1:+8277715 None:intergenic
GAGGCCTAATTGATTTCATC+TGG 0.395837 8_1:-8277719 Msa1176260:three_prime_UTR
CAAGAAAATAGATTATGATA+TGG 0.396441 8_1:-8280014 Msa1176260:CDS
TGTAATTTCAGGTGCTGAAA+TGG 0.408940 8_1:-8277885 Msa1176260:three_prime_UTR
GTAGAAGCATGTAAGGGAAC+AGG 0.412486 8_1:+8280193 None:intergenic
TAAATGTTGGTCGTACCTTA+GGG 0.419867 8_1:+8280166 None:intergenic
ATGGTCAAAAGATTGTCTTT+TGG 0.423651 8_1:+8278200 None:intergenic
GGGGTCAGTAGAAGCATGTA+AGG 0.452026 8_1:+8280186 None:intergenic
GTGTTTAAGGTGGTTGTCAT+TGG 0.457462 8_1:-8279974 Msa1176260:CDS
TTTCTTGCTTCTTCTCACCC+TGG 0.465966 8_1:+8280044 None:intergenic
TCTTATAAAACCTTGGACCT+TGG 0.472463 8_1:+8280106 None:intergenic
AGTACATATATGTATGTGTA+TGG 0.489103 8_1:-8277754 Msa1176260:three_prime_UTR
TATTAAAATTGTTTCAACAT+TGG 0.494858 8_1:-8280248 Msa1176260:five_prime_UTR
TAAAAGAATAGGCAAGGAAG+TGG 0.496696 8_1:+8280275 None:intergenic
GGGATACTGCTGGCCAAGAA+AGG 0.510670 8_1:-8279811 Msa1176260:intron
ACTAGACTCTTATAAAACCT+TGG 0.513126 8_1:+8280099 None:intergenic
TGAAGGGGATTGCACTAAAA+GGG 0.515906 8_1:-8277919 Msa1176260:three_prime_UTR
AGTAATTAAAGCTCAGATCT+GGG 0.523029 8_1:-8279831 Msa1176260:CDS
AGCTCTTACTGGTGTGAATG+TGG 0.537237 8_1:-8278019 Msa1176260:CDS
TGACCTTGTTGATTTGAGAA+TGG 0.538385 8_1:-8278103 Msa1176260:CDS
CATGTAAGGGAACAGGGAAA+AGG 0.544493 8_1:+8280200 None:intergenic
AATAGATTATGTGTTTAAGG+TGG 0.547706 8_1:-8279984 Msa1176260:CDS
TCAATTGTGATCATGCTAGT+TGG 0.549084 8_1:-8278135 Msa1176260:CDS
GTAACAAGTGCATACTATAG+AGG 0.554671 8_1:-8278255 Msa1176260:CDS
AAAAGAATAGGCAAGGAAGT+GGG 0.556156 8_1:+8280276 None:intergenic
TAGTGGTAAAAGAATAGGCA+AGG 0.562407 8_1:+8280269 None:intergenic
TGTTGTGAAACCAAGGTCCA+AGG 0.562904 8_1:-8280116 Msa1176260:five_prime_UTR
TTGGAATGTGGTAATGTGAA+GGG 0.563064 8_1:-8277935 Msa1176260:three_prime_UTR
TTTAACATGTTGTGAAACCA+AGG 0.563140 8_1:-8280123 Msa1176260:five_prime_UTR
GCTCAGATCTGGGATACTGC+TGG 0.566767 8_1:-8279821 Msa1176260:CDS
TTGGAGTTGAATTCCAAACT+AGG 0.571652 8_1:-8279874 Msa1176260:CDS
CCTCAACCCATTTAGCAACA+TGG 0.576266 8_1:+8278181 None:intergenic
CCATGTTGCTAAATGGGTTG+AGG 0.577838 8_1:-8278181 Msa1176260:CDS
AATTTGGTATGACTAAATGT+TGG 0.592015 8_1:+8280153 None:intergenic
TCTCTGAGAAGAATAAGCCT+TGG 0.592944 8_1:+8278046 None:intergenic
CTTACTGGTGTGAATGTGGA+GGG 0.593992 8_1:-8278015 Msa1176260:CDS
TCTTACTGGTGTGAATGTGG+AGG 0.594853 8_1:-8278016 Msa1176260:CDS
CATGCTTCTACTGACCCCTA+AGG 0.606877 8_1:-8280181 Msa1176260:five_prime_UTR
AACTCAACTGCATCTTCAGT+AGG 0.619231 8_1:+8278078 None:intergenic
GTTGAGTTTGCAGAAGACCA+AGG 0.624217 8_1:-8278063 Msa1176260:CDS
TAGAAGCATGTAAGGGAACA+GGG 0.626827 8_1:+8280194 None:intergenic
GTCATTGGTGACTCAGCAGT+AGG 0.628855 8_1:-8279959 Msa1176260:CDS
TGGAATGTGGTAATGTGAAG+GGG 0.631602 8_1:-8277934 Msa1176260:three_prime_UTR
GTATGTGTATGGTTAATGAA+TGG 0.633667 8_1:-8277743 Msa1176260:three_prime_UTR
TTGTTGCTGATATAGGTACA+GGG 0.635425 8_1:-8278280 Msa1176260:intron
ATTGGAATGTGGTAATGTGA+AGG 0.637056 8_1:-8277936 Msa1176260:three_prime_UTR
ATACTATAGAGGTGCATTAG+GGG 0.644147 8_1:-8278244 Msa1176260:CDS
TAAGGGAACAGGGAAAAGGT+AGG 0.645907 8_1:+8280204 None:intergenic
AAAGAATAGGCAAGGAAGTG+GGG 0.651506 8_1:+8280277 None:intergenic
ATCATGCTAGTTGGTAACAA+AGG 0.656634 8_1:-8278126 Msa1176260:CDS
AAATGTTGGTCGTACCTTAG+GGG 0.656793 8_1:+8280167 None:intergenic
GGGTCAGTAGAAGCATGTAA+GGG 0.678693 8_1:+8280187 None:intergenic
GAACCATTCTCAAATCAACA+AGG 0.712150 8_1:+8278100 None:intergenic
TGTATGGTTAATGAATGGTG+AGG 0.780914 8_1:-8277738 Msa1176260:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAATTGTTTCAACAT+TGG - chr8_1:8277715-8277734 Msa1176260:three_prime_UTR 15.0%
!! CATGTTAAAATACAATAATT+TGG + chr8_1:8277829-8277848 None:intergenic 15.0%
!!! TTGTTTTTTTCATTTCTTAT+TGG + chr8_1:8278620-8278639 None:intergenic 15.0%
!! AATAAGAAATGAAAAAAACA+AGG - chr8_1:8278619-8278638 Msa1176260:intron 15.0%
!! TTTAATAGTGGTAAAAGAAT+AGG + chr8_1:8277702-8277721 None:intergenic 20.0%
!!! TGTTGAAACAATTTTAATAG+TGG + chr8_1:8277714-8277733 None:intergenic 20.0%
!! CAAGAAAATAGATTATGATA+TGG - chr8_1:8277949-8277968 Msa1176260:three_prime_UTR 20.0%
!! GAAAATAGATTATGTGTTTA+AGG - chr8_1:8277976-8277995 Msa1176260:three_prime_UTR 20.0%
!! TCAAAATGGTACATAATTAT+TGG - chr8_1:8278269-8278288 Msa1176260:intron 20.0%
!! TTATTATTGCAATATTAGTG+TGG - chr8_1:8278387-8278406 Msa1176260:intron 20.0%
!! AAAGAAGAAATCTGATTAAA+AGG - chr8_1:8279148-8279167 Msa1176260:intron 20.0%
!!! AATGTCAATAATTTGTGTAT+TGG + chr8_1:8279446-8279465 None:intergenic 20.0%
!!! TAATAGTGTAGTTTCTAAAA+AGG - chr8_1:8280003-8280022 Msa1176260:CDS 20.0%
!!! TTGTATTTGATTTTGAAGTT+TGG - chr8_1:8280167-8280186 Msa1176260:five_prime_UTR 20.0%
!!! TGTATTTGATTTTGAAGTTT+GGG - chr8_1:8280168-8280187 Msa1176260:five_prime_UTR 20.0%
! AATTTGGTATGACTAAATGT+TGG + chr8_1:8277813-8277832 None:intergenic 25.0%
! AATAGATTATGTGTTTAAGG+TGG - chr8_1:8277979-8277998 Msa1176260:three_prime_UTR 25.0%
! GAAAAACTCAAATACTATCA+AGG - chr8_1:8278026-8278045 Msa1176260:CDS 25.0%
! AACTACATTGAGTTTCAAAA+TGG - chr8_1:8278255-8278274 Msa1176260:CDS 25.0%
! ATATGTTTCTTACGTCAAAA+TGG + chr8_1:8278442-8278461 None:intergenic 25.0%
! ATTATGTCACATTAATGTTC+TGG - chr8_1:8278477-8278496 Msa1176260:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr8_1:8278607-8278626 None:intergenic 25.0%
!!! ATTATACCTTGCTTTAGAAA+AGG - chr8_1:8278935-8278954 Msa1176260:intron 25.0%
!! CTGAACAATTTTCAATTCAT+TGG + chr8_1:8278975-8278994 None:intergenic 25.0%
! GGTAAATGATCAATTGTTAT+CGG + chr8_1:8279425-8279444 None:intergenic 25.0%
!!! GACATTTAGTCTTTTATATG+TGG - chr8_1:8279460-8279479 Msa1176260:intron 25.0%
! TTATGAAGAAGCAAAAATGT+TGG - chr8_1:8279504-8279523 Msa1176260:intron 25.0%
!! TTAGTCTTTGTAGTTGTATA+CGG - chr8_1:8279569-8279588 Msa1176260:intron 25.0%
!! GTAAATTTTGTTGCTGATAT+AGG - chr8_1:8279676-8279695 Msa1176260:intron 25.0%
!! TCTAAGATTGATGTAATTTC+AGG - chr8_1:8280067-8280086 Msa1176260:exon 25.0%
!!! TTTTGAAGTTTGGGAAAAAA+AGG - chr8_1:8280177-8280196 Msa1176260:five_prime_UTR 25.0%
! AGTACATATATGTATGTGTA+TGG - chr8_1:8280209-8280228 Msa1176260:five_prime_UTR 25.0%
TTTAACATGTTGTGAAACCA+AGG - chr8_1:8277840-8277859 Msa1176260:three_prime_UTR 30.0%
ACTAGACTCTTATAAAACCT+TGG + chr8_1:8277867-8277886 None:intergenic 30.0%
TCTTGTCTTGTGAAGAAAAA+TGG - chr8_1:8277895-8277914 Msa1176260:three_prime_UTR 30.0%
TTTGACTCAAAGTCAACTAT+TGG - chr8_1:8278070-8278089 Msa1176260:CDS 30.0%
AAGTAATTAAAGCTCAGATC+TGG - chr8_1:8278131-8278150 Msa1176260:CDS 30.0%
AGTAATTAAAGCTCAGATCT+GGG - chr8_1:8278132-8278151 Msa1176260:CDS 30.0%
TGAAACTCAATGTAGTTCAA+GGG + chr8_1:8278252-8278271 None:intergenic 30.0%
TTGAAACTCAATGTAGTTCA+AGG + chr8_1:8278253-8278272 None:intergenic 30.0%
!!! AGAGTGCTCATTTTTAACTT+AGG + chr8_1:8278296-8278315 None:intergenic 30.0%
TTGCAATATTAGTGTGGTAT+TGG - chr8_1:8278393-8278412 Msa1176260:intron 30.0%
AGAGAGAAAGTTGTCAAAAA+TGG + chr8_1:8278539-8278558 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr8_1:8278594-8278613 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr8_1:8278645-8278664 Msa1176260:intron 30.0%
! AACTCTTGATGACTTACTTA+AGG + chr8_1:8279110-8279129 None:intergenic 30.0%
ATTAAAAGGAGAGAATACAC+CGG - chr8_1:8279162-8279181 Msa1176260:intron 30.0%
!! GCATTTTGGAAAATTTGGTT+GGG - chr8_1:8279308-8279327 Msa1176260:intron 30.0%
! ATGGTCAAAAGATTGTCTTT+TGG + chr8_1:8279766-8279785 None:intergenic 30.0%
! TTTTGACCATGTTGCTAAAT+GGG - chr8_1:8279776-8279795 Msa1176260:intron 30.0%
! TGTAGTTTCTAAAAAGGCAT+TGG - chr8_1:8280009-8280028 Msa1176260:CDS 30.0%
GTATGTGTATGGTTAATGAA+TGG - chr8_1:8280220-8280239 Msa1176260:five_prime_UTR 30.0%
AAGACCAGATGAAATCAATT+AGG + chr8_1:8280251-8280270 None:intergenic 30.0%
GATAACAACTATTCAGTTCT+TGG + chr8_1:8280284-8280303 None:intergenic 30.0%
AAAAGAATAGGCAAGGAAGT+GGG + chr8_1:8277690-8277709 None:intergenic 35.0%
TAAAAGAATAGGCAAGGAAG+TGG + chr8_1:8277691-8277710 None:intergenic 35.0%
TAGTGGTAAAAGAATAGGCA+AGG + chr8_1:8277697-8277716 None:intergenic 35.0%
TAAATGTTGGTCGTACCTTA+GGG + chr8_1:8277800-8277819 None:intergenic 35.0%
TCTTATAAAACCTTGGACCT+TGG + chr8_1:8277860-8277879 None:intergenic 35.0%
TTGTGAAGAAAAATGGTCCA+GGG - chr8_1:8277902-8277921 Msa1176260:three_prime_UTR 35.0%
TTGGAGTTGAATTCCAAACT+AGG - chr8_1:8278089-8278108 Msa1176260:CDS 35.0%
TAATAGTGACAGTCCTAGTT+TGG + chr8_1:8278105-8278124 None:intergenic 35.0%
ACTAGGACTGTCACTATTAA+TGG - chr8_1:8278106-8278125 Msa1176260:CDS 35.0%
TGAGAGATATGAACCTTTCT+TGG + chr8_1:8278168-8278187 None:intergenic 35.0%
TAGTTCAAGGGAAATAGAGA+AGG + chr8_1:8278240-8278259 None:intergenic 35.0%
GTTAAAAATGAGCACTCTGA+CGG - chr8_1:8278298-8278317 Msa1176260:intron 35.0%
! TGTCACATTAATGTTCTGGA+AGG - chr8_1:8278481-8278500 Msa1176260:intron 35.0%
!! GTCACATTAATGTTCTGGAA+GGG - chr8_1:8278482-8278501 Msa1176260:intron 35.0%
!! TCACATTAATGTTCTGGAAG+GGG - chr8_1:8278483-8278502 Msa1176260:intron 35.0%
! TATGAGACAGTGAACAGTTT+TGG - chr8_1:8278694-8278713 Msa1176260:intron 35.0%
CAAACCAAAATTCTTGGTCT+TGG + chr8_1:8278762-8278781 None:intergenic 35.0%
!!! CAAGACCAAGAATTTTGGTT+TGG - chr8_1:8278760-8278779 Msa1176260:intron 35.0%
TGTGACCAAACCAAAATTCT+TGG + chr8_1:8278880-8278899 None:intergenic 35.0%
!!! CTGGATCAAGAATTTTGGTT+TGG + chr8_1:8278888-8278907 None:intergenic 35.0%
CAAACCAAAATTCTTGATCC+AGG - chr8_1:8278886-8278905 Msa1176260:intron 35.0%
!! ATACCTTGCTTTAGAAAAGG+TGG - chr8_1:8278938-8278957 Msa1176260:intron 35.0%
!! TACCTTGCTTTAGAAAAGGT+GGG - chr8_1:8278939-8278958 Msa1176260:intron 35.0%
TTGTTCAGTGTGTGCATTAA+TGG - chr8_1:8278987-8279006 Msa1176260:intron 35.0%
AGTGTGTGCATTAATGGTAA+AGG - chr8_1:8278993-8279012 Msa1176260:intron 35.0%
GTGTGTGCATTAATGGTAAA+GGG - chr8_1:8278994-8279013 Msa1176260:intron 35.0%
GAGAATGAGCAAAATGTGTT+GGG + chr8_1:8279210-8279229 None:intergenic 35.0%
TGAGAATGAGCAAAATGTGT+TGG + chr8_1:8279211-8279230 None:intergenic 35.0%
!! GGCATTTTGGAAAATTTGGT+TGG - chr8_1:8279307-8279326 Msa1176260:intron 35.0%
! GTTGGTGTTTAGATACTTCA+TGG - chr8_1:8279366-8279385 Msa1176260:intron 35.0%
TGGTCAAATGTTCGATTCTT+AGG - chr8_1:8279480-8279499 Msa1176260:intron 35.0%
GCAAAAATGTTGGAAGTGAT+CGG - chr8_1:8279514-8279533 Msa1176260:intron 35.0%
!!! GTTAGTTTTTGACTTAGCCA+GGG + chr8_1:8279601-8279620 None:intergenic 35.0%
!!! TGTTAGTTTTTGACTTAGCC+AGG + chr8_1:8279602-8279621 None:intergenic 35.0%
TTTGTTGCTGATATAGGTAC+AGG - chr8_1:8279682-8279701 Msa1176260:intron 35.0%
TTGTTGCTGATATAGGTACA+GGG - chr8_1:8279683-8279702 Msa1176260:intron 35.0%
GTAACAAGTGCATACTATAG+AGG - chr8_1:8279708-8279727 Msa1176260:intron 35.0%
! CATACTATAGAGGTGCATTA+GGG - chr8_1:8279718-8279737 Msa1176260:intron 35.0%
! ATACTATAGAGGTGCATTAG+GGG - chr8_1:8279719-8279738 Msa1176260:intron 35.0%
! CTTTTGACCATGTTGCTAAA+TGG - chr8_1:8279775-8279794 Msa1176260:intron 35.0%
TCAATTGTGATCATGCTAGT+TGG - chr8_1:8279828-8279847 Msa1176260:CDS 35.0%
!! ATCATGCTAGTTGGTAACAA+AGG - chr8_1:8279837-8279856 Msa1176260:CDS 35.0%
!! TGACCTTGTTGATTTGAGAA+TGG - chr8_1:8279860-8279879 Msa1176260:CDS 35.0%
GAACCATTCTCAAATCAACA+AGG + chr8_1:8279866-8279885 None:intergenic 35.0%
!! TCTAAAAAGGCATTGGAATG+TGG - chr8_1:8280016-8280035 Msa1176260:CDS 35.0%
! ATTGGAATGTGGTAATGTGA+AGG - chr8_1:8280027-8280046 Msa1176260:CDS 35.0%
! TTGGAATGTGGTAATGTGAA+GGG - chr8_1:8280028-8280047 Msa1176260:CDS 35.0%
!! TGTAATTTCAGGTGCTGAAA+TGG - chr8_1:8280078-8280097 Msa1176260:five_prime_UTR 35.0%
TGTATGGTTAATGAATGGTG+AGG - chr8_1:8280225-8280244 Msa1176260:five_prime_UTR 35.0%
AAAGAATAGGCAAGGAAGTG+GGG + chr8_1:8277689-8277708 None:intergenic 40.0%
! TAGAAGCATGTAAGGGAACA+GGG + chr8_1:8277772-8277791 None:intergenic 40.0%
AAATGTTGGTCGTACCTTAG+GGG + chr8_1:8277799-8277818 None:intergenic 40.0%
CTAAATGTTGGTCGTACCTT+AGG + chr8_1:8277801-8277820 None:intergenic 40.0%
CTTGTGAAGAAAAATGGTCC+AGG - chr8_1:8277901-8277920 Msa1176260:three_prime_UTR 40.0%
GGTGAGAAGAAGCAAGAAAA+TGG - chr8_1:8277923-8277942 Msa1176260:three_prime_UTR 40.0%
! GTGTTTAAGGTGGTTGTCAT+TGG - chr8_1:8277989-8278008 Msa1176260:exon 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr8_1:8278584-8278603 None:intergenic 40.0%
AGCAGAGAGAAAATCTTGTG+TGG - chr8_1:8278735-8278754 Msa1176260:intron 40.0%
! TGGACCAAGACCAAGAATTT+TGG - chr8_1:8278755-8278774 Msa1176260:intron 40.0%
AAGAGAGAAGAGAGAGAAGA+GGG - chr8_1:8278799-8278818 Msa1176260:intron 40.0%
! TGGACCTGGATCAAGAATTT+TGG + chr8_1:8278893-8278912 None:intergenic 40.0%
GCTAAAGAGAAACACTTGTG+TGG + chr8_1:8278913-8278932 None:intergenic 40.0%
TGACATGAGTTTCGTACAAG+TGG - chr8_1:8279069-8279088 Msa1176260:intron 40.0%
TGTGTGAGTTAACTCAAGCA+GGG + chr8_1:8279253-8279272 None:intergenic 40.0%
ATGTGTGAGTTAACTCAAGC+AGG + chr8_1:8279254-8279273 None:intergenic 40.0%
!!! CAGGGGCATTTTGGAAAATT+TGG - chr8_1:8279303-8279322 Msa1176260:intron 40.0%
TGGGAATGAGTAAAACGTGT+TGG - chr8_1:8279327-8279346 Msa1176260:intron 40.0%
GGGAATGAGTAAAACGTGTT+GGG - chr8_1:8279328-8279347 Msa1176260:intron 40.0%
! GCATACTATAGAGGTGCATT+AGG - chr8_1:8279717-8279736 Msa1176260:intron 40.0%
AACTCAACTGCATCTTCAGT+AGG + chr8_1:8279888-8279907 None:intergenic 40.0%
! TCTCTGAGAAGAATAAGCCT+TGG + chr8_1:8279920-8279939 None:intergenic 40.0%
! TGGAATGTGGTAATGTGAAG+GGG - chr8_1:8280029-8280048 Msa1176260:CDS 40.0%
TGAAGGGGATTGCACTAAAA+GGG - chr8_1:8280044-8280063 Msa1176260:CDS 40.0%
! GAGGCCTAATTGATTTCATC+TGG - chr8_1:8280244-8280263 Msa1176260:five_prime_UTR 40.0%
TAAGGGAACAGGGAAAAGGT+AGG + chr8_1:8277762-8277781 None:intergenic 45.0%
CATGTAAGGGAACAGGGAAA+AGG + chr8_1:8277766-8277785 None:intergenic 45.0%
! GTAGAAGCATGTAAGGGAAC+AGG + chr8_1:8277773-8277792 None:intergenic 45.0%
! GGGTCAGTAGAAGCATGTAA+GGG + chr8_1:8277779-8277798 None:intergenic 45.0%
TGTTGTGAAACCAAGGTCCA+AGG - chr8_1:8277847-8277866 Msa1176260:three_prime_UTR 45.0%
TTTCTTGCTTCTTCTCACCC+TGG + chr8_1:8277922-8277941 None:intergenic 45.0%
GATTATCACGCAGACACATG+TGG - chr8_1:8278322-8278341 Msa1176260:intron 45.0%
GAAGAGAGAAGAGAGAGAAG+AGG - chr8_1:8278798-8278817 Msa1176260:intron 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG - chr8_1:8278842-8278861 Msa1176260:intron 45.0%
!!! CACCCACCTTTTCTAAAGCA+AGG + chr8_1:8278944-8278963 None:intergenic 45.0%
AAAAGGAGAGAATACACCGG+AGG - chr8_1:8279165-8279184 Msa1176260:intron 45.0%
AGAGCAGAATTCAACACCTC+CGG + chr8_1:8279184-8279203 None:intergenic 45.0%
GTTGTATACGGAATATGCCC+TGG - chr8_1:8279581-8279600 Msa1176260:intron 45.0%
CCTCAACCCATTTAGCAACA+TGG + chr8_1:8279785-8279804 None:intergenic 45.0%
!! CCATGTTGCTAAATGGGTTG+AGG - chr8_1:8279782-8279801 Msa1176260:intron 45.0%
GTTGAGTTTGCAGAAGACCA+AGG - chr8_1:8279900-8279919 Msa1176260:CDS 45.0%
TCAGAGACTTCAGCTCTTAC+TGG - chr8_1:8279933-8279952 Msa1176260:CDS 45.0%
AGCTCTTACTGGTGTGAATG+TGG - chr8_1:8279944-8279963 Msa1176260:CDS 45.0%
TCTTACTGGTGTGAATGTGG+AGG - chr8_1:8279947-8279966 Msa1176260:CDS 45.0%
CTTACTGGTGTGAATGTGGA+GGG - chr8_1:8279948-8279967 Msa1176260:CDS 45.0%
GTGAAGGGGATTGCACTAAA+AGG - chr8_1:8280043-8280062 Msa1176260:CDS 45.0%
! GGGGTCAGTAGAAGCATGTA+AGG + chr8_1:8277780-8277799 None:intergenic 50.0%
CATGCTTCTACTGACCCCTA+AGG - chr8_1:8277782-8277801 Msa1176260:three_prime_UTR 50.0%
! GTCATTGGTGACTCAGCAGT+AGG - chr8_1:8278004-8278023 Msa1176260:CDS 50.0%
GAGAAACACTTGTGTGGACC+TGG + chr8_1:8278907-8278926 None:intergenic 50.0%
TGCGTGAGTTAACTCACGCA+GGG - chr8_1:8279285-8279304 Msa1176260:intron 50.0%
!!! TAACTCACGCAGGGGCATTT+TGG - chr8_1:8279294-8279313 Msa1176260:intron 50.0%
GGGAGAAGAGCAGAATTCGT+TGG - chr8_1:8279348-8279367 Msa1176260:intron 50.0%
! GCTCAGATCTGGGATACTGC+TGG - chr8_1:8278142-8278161 Msa1176260:CDS 55.0%
GGGATACTGCTGGCCAAGAA+AGG - chr8_1:8278152-8278171 Msa1176260:CDS 55.0%
CTGCGTGAGTTAACTCACGC+AGG - chr8_1:8279284-8279303 Msa1176260:intron 55.0%
GCGTGAGTTAACTCACGCAG+GGG - chr8_1:8279286-8279305 Msa1176260:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 8277663 8280322 8277663 ID=Msa1176260;Name=Msa1176260
chr8_1 mRNA 8277663 8280322 8277663 ID=Msa1176260-mRNA-1;Parent=Msa1176260;Name=Msa1176260-mRNA-1;_AED=0.18;_eAED=0.18;_QI=251|1|1|1|1|1|2|336|182
chr8_1 exon 8277663 8278287 8277663 ID=Msa1176260-mRNA-1:exon:2826;Parent=Msa1176260-mRNA-1
chr8_1 exon 8279812 8280322 8279812 ID=Msa1176260-mRNA-1:exon:2825;Parent=Msa1176260-mRNA-1
chr8_1 five_prime_UTR 8280072 8280322 8280072 ID=Msa1176260-mRNA-1:five_prime_utr;Parent=Msa1176260-mRNA-1
chr8_1 CDS 8279812 8280071 8279812 ID=Msa1176260-mRNA-1:cds;Parent=Msa1176260-mRNA-1
chr8_1 CDS 8277999 8278287 8277999 ID=Msa1176260-mRNA-1:cds;Parent=Msa1176260-mRNA-1
chr8_1 three_prime_UTR 8277663 8277998 8277663 ID=Msa1176260-mRNA-1:three_prime_utr;Parent=Msa1176260-mRNA-1
Gene Sequence

>Msa1176260

ATGGTCCAGGGTGAGAAGAAGCAAGAAAATGGACACAAGAAAATAGATTATGATATGGAAGAGAAAATAGATTATGTGTTTAAGGTGGTTGTCATTGGTGACTCAGCAGTAGGAAAAACTCAAATACTATCAAGGTTTTCAAAGAATGAGTTTTGCTTTGACTCAAAGTCAACTATTGGAGTTGAATTCCAAACTAGGACTGTCACTATTAATGGTAAAGTAATTAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCTGTAACAAGTGCATACTATAGAGGTGCATTAGGGGCAATGCTAGTATATGACATAACCAAAAGACAATCTTTTGACCATGTTGCTAAATGGGTTGAGGAACTTAGAGCACATGCAGATAACTCAATTGTGATCATGCTAGTTGGTAACAAAGGTGACCTTGTTGATTTGAGAATGGTTCCTACTGAAGATGCAGTTGAGTTTGCAGAAGACCAAGGCTTATTCTTCTCAGAGACTTCAGCTCTTACTGGTGTGAATGTGGAGGGTGCATTGCATTTATGA
Protein sequence

>Msa1176260

MVQGEKKQENGHKKIDYDMEEKIDYVFKVVVIGDSAVGKTQILSRFSKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVAKWVEELRAHADNSIVIMLVGNKGDLVDLRMVPTEDAVEFAEDQGLFFSETSALTGVNVEGALHL*