AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037880 MtrunA17_Chr1g0212421 96.721 122 4 0 1 122 1 122 4.87e-82 236
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037880 AT5G08535.4 60.526 114 35 2 10 122 12 116 3.36e-36 120
Msa0037880 AT5G08535.2 60.526 114 35 2 10 122 12 116 3.36e-36 120
Msa0037880 AT5G08535.3 60.526 114 35 2 10 122 12 116 3.36e-36 120
Msa0037880 AT5G08535.1 60.526 114 35 2 10 122 37 141 5.58e-36 120
Msa0037880 AT3G52350.1 57.143 119 42 3 5 122 70 180 3.55e-30 107

Find 53 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTAATATAGGGTTTC+AGG 0.106839 1_1:+67066381 Msa0037880:CDS
ACAATCAACTCTTCTAATAT+AGG 0.290837 1_1:+67066373 Msa0037880:CDS
TACCTGCTTATTGTCTCCTT+TGG 0.305621 1_1:-67067181 None:intergenic
AGAGTACCCCGTATGGGTTT+TGG 0.312465 1_1:+67070206 Msa0037880:three_prime_UTR
CAATCAACTCTTCTAATATA+GGG 0.322273 1_1:+67066374 Msa0037880:CDS
GCGCTTTCTTTAGAGAGTTC+TGG 0.323271 1_1:+67069706 Msa0037880:CDS
ATGATAGGCCATGTCCTTCC+TGG 0.332353 1_1:+67070015 Msa0037880:three_prime_UTR
AAGAATAATAAACGAGGTTT+GGG 0.354264 1_1:+67067108 Msa0037880:CDS
CCAGGATACTTACAGGATAT+AGG 0.358028 1_1:+67069857 Msa0037880:three_prime_UTR
CTGCTTATTGTCTCCTTTGG+AGG 0.363940 1_1:-67067178 None:intergenic
AAAGAATAATAAACGAGGTT+TGG 0.364649 1_1:+67067107 Msa0037880:CDS
TGGAAAGAAGGGACTGGTCT+TGG 0.385117 1_1:+67066527 Msa0037880:CDS
CCTATATCCTGTAAGTATCC+TGG 0.397988 1_1:-67069857 None:intergenic
AAGCCAAAGCACTTTCTAAA+CGG 0.409716 1_1:+67069631 Msa0037880:CDS
CGACGTTTCTTCCATGGCTA+TGG 0.409832 1_1:-67066335 None:intergenic
CACCCGTTTAGAAAGTGCTT+TGG 0.422675 1_1:-67069634 None:intergenic
ATGTGTCAAATGTGCAAGTA+TGG 0.429149 1_1:+67070177 Msa0037880:three_prime_UTR
TTGGAGGAATCACCGTGATC+AGG 0.437824 1_1:-67067162 None:intergenic
AAGAAGCATGGTTGGAAAGA+AGG 0.444986 1_1:+67066515 Msa0037880:CDS
GATAAATATACAAAATTCAG+AGG 0.460514 1_1:+67069985 Msa0037880:three_prime_UTR
AGCCAAAGCACTTTCTAAAC+GGG 0.461909 1_1:+67069632 Msa0037880:CDS
AACTCATCCAAAACCCATAC+GGG 0.478312 1_1:-67070213 None:intergenic
TGGTCTTGGAATCTCTGAGC+AGG 0.482435 1_1:+67066541 Msa0037880:CDS
ACTAAGAAAGTGAATGCAAA+AGG 0.483023 1_1:-67069783 None:intergenic
AGCAGATATAGTGAAGAAGA+AGG 0.498955 1_1:+67067131 Msa0037880:CDS
TTCAGAGGGAAGGTAATGAT+AGG 0.500568 1_1:+67070000 Msa0037880:three_prime_UTR
CTATATCCTGTAAGTATCCT+GGG 0.500671 1_1:-67069856 None:intergenic
TAAACTCGACGTTTCTTCCA+TGG 0.501987 1_1:-67066341 None:intergenic
TGAAAAGAAGATGCAAGAGA+AGG 0.518345 1_1:+67069674 Msa0037880:CDS
TTCTTTACACGAGTTTCCAC+AGG 0.518432 1_1:-67067090 None:intergenic
CAACTCATCCAAAACCCATA+CGG 0.528929 1_1:-67070214 None:intergenic
GGAGAAGAGAAGAGACAGAG+AGG 0.534554 1_1:+67066086 None:intergenic
TAGTGGTTGAAGTCCTGAAA+AGG 0.542963 1_1:-67070080 None:intergenic
AGAAGCATGGTTGGAAAGAA+GGG 0.546784 1_1:+67066516 Msa0037880:CDS
GAAGAGAAGAGACAGAGAGG+AGG 0.548384 1_1:+67066089 Msa0037880:five_prime_UTR
GTTCTTGAGAGTACCCCGTA+TGG 0.558523 1_1:+67070199 Msa0037880:three_prime_UTR
TTTCAAAGTCGTGTGCAAGT+TGG 0.562551 1_1:+67069817 Msa0037880:three_prime_UTR
TTCTTGAGAGTACCCCGTAT+GGG 0.578616 1_1:+67070200 Msa0037880:three_prime_UTR
CTCCAAAGGAGACAATAAGC+AGG 0.587624 1_1:+67067179 Msa0037880:CDS
CTTGTGTAAATCCATAGCCA+TGG 0.590413 1_1:+67066324 Msa0037880:exon
GGAAGTGTCTTTAGAGCTAG+TGG 0.595771 1_1:-67070097 None:intergenic
AAATGTATGAGAATTGATGA+TGG 0.601449 1_1:+67069734 Msa0037880:exon
ATATACAAAATTCAGAGGGA+AGG 0.608055 1_1:+67069990 Msa0037880:three_prime_UTR
CATGGTTGGAAAGAAGGGAC+TGG 0.614326 1_1:+67066521 Msa0037880:CDS
GATCACGGTGATTCCTCCAA+AGG 0.624641 1_1:+67067165 Msa0037880:CDS
ACAGGGTAGATTAGAACCTG+TGG 0.628498 1_1:+67067074 Msa0037880:intron
AATGTATGAGAATTGATGAT+GGG 0.631074 1_1:+67069735 Msa0037880:exon
AAGAATATATAAAATACATG+TGG 0.634241 1_1:-67070118 None:intergenic
GTGTGCAAGTTGGATCTCGA+AGG 0.648173 1_1:+67069827 Msa0037880:three_prime_UTR
ATAAATATACAAAATTCAGA+GGG 0.657730 1_1:+67069986 Msa0037880:three_prime_UTR
AAGGTTGTGAAACCTGATCA+CGG 0.667061 1_1:+67067150 Msa0037880:CDS
CGTGTAAAGAATAATAAACG+AGG 0.690122 1_1:+67067102 Msa0037880:CDS
ACTCATCCAAAACCCATACG+GGG 0.756814 1_1:-67070212 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAATATATTTAAAGTG+GGG + chr1_1:67068371-67068390 Msa0037880:intron 10.0%
!! TATAAAAATAAAAAAGCTAT+AGG + chr1_1:67069074-67069093 Msa0037880:intron 10.0%
!! ATAAAAATAAAAAAGCTATA+GGG + chr1_1:67069075-67069094 Msa0037880:intron 10.0%
!! AAGAAAAAGAAAAAAAAAAA+AGG - chr1_1:67069945-67069964 None:intergenic 10.0%
!! TGTGCATTTAAATTAAATTA+GGG - chr1_1:67066816-67066835 None:intergenic 15.0%
!! ATGTGCATTTAAATTAAATT+AGG - chr1_1:67066817-67066836 None:intergenic 15.0%
!! TTAAATTAGTATAAGATTGT+AGG + chr1_1:67066883-67066902 Msa0037880:intron 15.0%
!! AATAGAATTATGCAAATAAT+AGG + chr1_1:67067602-67067621 Msa0037880:intron 15.0%
!! ATAGAATTATGCAAATAATA+GGG + chr1_1:67067603-67067622 Msa0037880:intron 15.0%
!! ATGCATTCTTAAAAAAAAAA+TGG + chr1_1:67067800-67067819 Msa0037880:intron 15.0%
!! TCTTAAAAAAAAAATGGAAA+AGG + chr1_1:67067806-67067825 Msa0037880:intron 15.0%
!! CTTAAAAAAAAAATGGAAAA+GGG + chr1_1:67067807-67067826 Msa0037880:intron 15.0%
!! TTAAAAAAAAAATGGAAAAG+GGG + chr1_1:67067808-67067827 Msa0037880:intron 15.0%
!! AATTATTAGAAAGAAAATTG+AGG + chr1_1:67068729-67068748 Msa0037880:intron 15.0%
!! ATAAATATACAAAATTCAGA+GGG + chr1_1:67069986-67070005 Msa0037880:three_prime_UTR 15.0%
!! AAGAATATATAAAATACATG+TGG - chr1_1:67070121-67070140 None:intergenic 15.0%
!! TGAAAGAATTGATATGAAAT+TGG - chr1_1:67066192-67066211 None:intergenic 20.0%
!! GAAAATAGAAAATGAAAGAA+GGG - chr1_1:67066421-67066440 None:intergenic 20.0%
!! TGAAAATAGAAAATGAAAGA+AGG - chr1_1:67066422-67066441 None:intergenic 20.0%
!!! TTAATTTGATCTTTCAATGA+AGG - chr1_1:67066595-67066614 None:intergenic 20.0%
!! TCAAATTAATTCTTATGTCT+AGG + chr1_1:67066782-67066801 Msa0037880:intron 20.0%
!!! TTTAATTTAAATGCACATTC+AGG + chr1_1:67066819-67066838 Msa0037880:intron 20.0%
!! TTAATTTAAATGCACATTCA+GGG + chr1_1:67066820-67066839 Msa0037880:intron 20.0%
!!! TCTGATACACAATTTTATTT+TGG + chr1_1:67067049-67067068 Msa0037880:intron 20.0%
!!! ACAATTTTATTTTGGTAACA+GGG + chr1_1:67067057-67067076 Msa0037880:intron 20.0%
!! TAACAATTTACAATAGTAGA+AGG + chr1_1:67067251-67067270 Msa0037880:intron 20.0%
!! AACAATTTACAATAGTAGAA+GGG + chr1_1:67067252-67067271 Msa0037880:intron 20.0%
!! AACTACATAACTATGTAAAA+CGG + chr1_1:67067276-67067295 Msa0037880:intron 20.0%
!!! TTATTTTATTGAATTTGGTG+AGG + chr1_1:67067419-67067438 Msa0037880:intron 20.0%
!! ATCATTTGTAATCAAATGAA+TGG + chr1_1:67067538-67067557 Msa0037880:intron 20.0%
!! ACCTCAAAAATATATATGAA+GGG + chr1_1:67067893-67067912 Msa0037880:intron 20.0%
!! TTGAACTAATAAACACTTTA+CGG + chr1_1:67067940-67067959 Msa0037880:intron 20.0%
!! ATTCATTTCTTAGATATGTT+TGG - chr1_1:67068054-67068073 None:intergenic 20.0%
!!! ACTATATTTTGCTTTTACTT+TGG - chr1_1:67068196-67068215 None:intergenic 20.0%
!!! TTCTCTTATTTGAGTTTAAA+GGG - chr1_1:67068464-67068483 None:intergenic 20.0%
!! AAGTAAAGTGAATTAAAAAG+AGG + chr1_1:67068574-67068593 Msa0037880:intron 20.0%
!! CTATCTCAAGATTTAATAAA+TGG + chr1_1:67068932-67068951 Msa0037880:intron 20.0%
!!! ATGCTTATTTTAAGATATTC+TGG - chr1_1:67069043-67069062 None:intergenic 20.0%
!! AGAATATCTTAAAATAAGCA+TGG + chr1_1:67069042-67069061 Msa0037880:intron 20.0%
!!! TTTTTTTCAGAGAGAAAAAA+GGG - chr1_1:67069185-67069204 None:intergenic 20.0%
!! CTCTTCAAATTAAAAAGAAA+TGG + chr1_1:67069313-67069332 Msa0037880:intron 20.0%
!! ATGGTAAAAACTTCAAAAAT+AGG + chr1_1:67069332-67069351 Msa0037880:intron 20.0%
!! AAACTTCAAAAATAGGAAAT+AGG + chr1_1:67069339-67069358 Msa0037880:intron 20.0%
!! TCATATTTAACAATAATGCA+AGG + chr1_1:67069438-67069457 Msa0037880:intron 20.0%
!! CATATTTAACAATAATGCAA+GGG + chr1_1:67069439-67069458 Msa0037880:intron 20.0%
!!! TTTTCAGTCATTTGAATTTT+TGG + chr1_1:67069520-67069539 Msa0037880:intron 20.0%
!!! TTTTTTTTTTTGCAAACAGA+AGG + chr1_1:67069882-67069901 Msa0037880:three_prime_UTR 20.0%
!! ACTATTTACAGATGAAAAAA+AGG - chr1_1:67069919-67069938 None:intergenic 20.0%
!! GATAAATATACAAAATTCAG+AGG + chr1_1:67069985-67070004 Msa0037880:three_prime_UTR 20.0%
!!! TTTTTTTTTTAAAACCAGGA+AGG - chr1_1:67070032-67070051 None:intergenic 20.0%
!!! TCCTGGTTTTAAAAAAAAAA+TGG + chr1_1:67070032-67070051 Msa0037880:three_prime_UTR 20.0%
!!! ACCATTTTTTTTTTAAAACC+AGG - chr1_1:67070036-67070055 None:intergenic 20.0%
!! CTGTTCAACAATTTCTTTTA+AGG + chr1_1:67066228-67066247 Msa0037880:intron 25.0%
!!! AATTTCTTTTAAGGCTTCAA+GGG + chr1_1:67066237-67066256 Msa0037880:intron 25.0%
! ACAATCAACTCTTCTAATAT+AGG + chr1_1:67066373-67066392 Msa0037880:CDS 25.0%
! CAATCAACTCTTCTAATATA+GGG + chr1_1:67066374-67066393 Msa0037880:CDS 25.0%
! TCTTATACTAATTTAACCCA+AGG - chr1_1:67066879-67066898 None:intergenic 25.0%
! TAAGATTGTAGGTTAATTGA+TGG + chr1_1:67066894-67066913 Msa0037880:intron 25.0%
! TACAAGAGAAATACTGAAAT+AGG - chr1_1:67066993-67067012 None:intergenic 25.0%
!!! TTGTATTCTGAAACAGTTTT+AGG + chr1_1:67067008-67067027 Msa0037880:intron 25.0%
!!! TGTATTCTGAAACAGTTTTA+GGG + chr1_1:67067009-67067028 Msa0037880:intron 25.0%
!!! CACAATTTTATTTTGGTAAC+AGG + chr1_1:67067056-67067075 Msa0037880:intron 25.0%
! AAAGAATAATAAACGAGGTT+TGG + chr1_1:67067107-67067126 Msa0037880:CDS 25.0%
! AAGAATAATAAACGAGGTTT+GGG + chr1_1:67067108-67067127 Msa0037880:CDS 25.0%
! ACCTAAAATAAGAAAACCTT+CGG - chr1_1:67067343-67067362 None:intergenic 25.0%
! AGATATACTTTGTTGACATA+TGG + chr1_1:67067505-67067524 Msa0037880:intron 25.0%
!!! AAACCATATATTTGCTATAC+AGG + chr1_1:67067740-67067759 Msa0037880:intron 25.0%
! GACCTCAAAAATATATATGA+AGG + chr1_1:67067892-67067911 Msa0037880:intron 25.0%
!! GTTCTCTTATTTGAGTTTAA+AGG - chr1_1:67068465-67068484 None:intergenic 25.0%
!!! TGAAAACAAATCTTTTTGAG+AGG - chr1_1:67068607-67068626 None:intergenic 25.0%
! TTCTACCATCTCTATTATAA+AGG - chr1_1:67068758-67068777 None:intergenic 25.0%
! TCTAAATCATTCTTAATGTC+AGG - chr1_1:67068902-67068921 None:intergenic 25.0%
! TGACATTAAGAATGATTTAG+AGG + chr1_1:67068901-67068920 Msa0037880:intron 25.0%
! TAATAAATGGCATAACTGTA+AGG + chr1_1:67068945-67068964 Msa0037880:intron 25.0%
!! CTTTTATATTGAACAACTCT+AGG + chr1_1:67069102-67069121 Msa0037880:intron 25.0%
!!! TTTTTTCAGAGAGAAAAAAG+GGG - chr1_1:67069184-67069203 None:intergenic 25.0%
!!! GTTTTTTTCAGAGAGAAAAA+AGG - chr1_1:67069186-67069205 None:intergenic 25.0%
!!! CTTTTTAATTTGAAGAGAAG+AGG - chr1_1:67069310-67069329 None:intergenic 25.0%
! ATAATATGATATCCGTGAAA+GGG - chr1_1:67069471-67069490 None:intergenic 25.0%
! TATAATATGATATCCGTGAA+AGG - chr1_1:67069472-67069491 None:intergenic 25.0%
! TGACTGAAAATGAAAAACAA+CGG - chr1_1:67069510-67069529 None:intergenic 25.0%
!! ATCAATTCTCATACATTTTC+AGG - chr1_1:67069732-67069751 None:intergenic 25.0%
! AAATGTATGAGAATTGATGA+TGG + chr1_1:67069734-67069753 Msa0037880:exon 25.0%
!! AATGTATGAGAATTGATGAT+GGG + chr1_1:67069735-67069754 Msa0037880:exon 25.0%
!!! CAATTTCTTTTAAGGCTTCA+AGG + chr1_1:67066236-67066255 Msa0037880:intron 30.0%
! GTTTTACGATGTATTTTCAG+TGG + chr1_1:67066259-67066278 Msa0037880:intron 30.0%
!! ACCTTTAAGGGCATTAAATT+TGG + chr1_1:67066751-67066770 Msa0037880:intron 30.0%
TCCAAATTTAATGCCCTTAA+AGG - chr1_1:67066755-67066774 None:intergenic 30.0%
AATTGCATATTTAGTAGCCT+TGG + chr1_1:67066859-67066878 Msa0037880:intron 30.0%
ATTGCATATTTAGTAGCCTT+GGG + chr1_1:67066860-67066879 Msa0037880:intron 30.0%
TGTTTATATCAGTTCTCCTT+AGG - chr1_1:67066924-67066943 None:intergenic 30.0%
!!! GTATTCTGAAACAGTTTTAG+GGG + chr1_1:67067010-67067029 Msa0037880:intron 30.0%
!!! GTGTATCAGAATTTTTTGCA+AGG - chr1_1:67067039-67067058 None:intergenic 30.0%
CGTGTAAAGAATAATAAACG+AGG + chr1_1:67067102-67067121 Msa0037880:CDS 30.0%
!! AAAGTTTGCTTTTGTTCTCA+AGG + chr1_1:67067212-67067231 Msa0037880:intron 30.0%
!! AAGTTTGCTTTTGTTCTCAA+GGG + chr1_1:67067213-67067232 Msa0037880:intron 30.0%
!! CTGAGTTTTTCATTTGGAAT+TGG + chr1_1:67067301-67067320 Msa0037880:intron 30.0%
!! TTTTATTGAATTTGGTGAGG+TGG + chr1_1:67067422-67067441 Msa0037880:intron 30.0%
! TTTATTGAATTTGGTGAGGT+GGG + chr1_1:67067423-67067442 Msa0037880:intron 30.0%
! TGGTATAGTACTTGGTAATT+AGG + chr1_1:67067449-67067468 Msa0037880:intron 30.0%
! ATATCTGTCTCTAAGAACAA+AGG + chr1_1:67067576-67067595 Msa0037880:intron 30.0%
GTAGATTTATAATACGACTC+AGG - chr1_1:67067636-67067655 None:intergenic 30.0%
AGTCGTATTATAAATCTACG+AGG + chr1_1:67067637-67067656 Msa0037880:intron 30.0%
GTCGTATTATAAATCTACGA+GGG + chr1_1:67067638-67067657 Msa0037880:intron 30.0%
CAACCTGTATAGCAAATATA+TGG - chr1_1:67067746-67067765 None:intergenic 30.0%
!! ATATTTGCTATACAGGTTGA+TGG + chr1_1:67067747-67067766 Msa0037880:intron 30.0%
!! GCCCTTCATATATATTTTTG+AGG - chr1_1:67067897-67067916 None:intergenic 30.0%
AAACACTTTACGGTAACTAT+AGG + chr1_1:67067950-67067969 Msa0037880:intron 30.0%
TAACTATAGGTGTGCATTAA+AGG + chr1_1:67067963-67067982 Msa0037880:intron 30.0%
GTGTTTGTAGTTTCTAAACT+TGG - chr1_1:67068228-67068247 None:intergenic 30.0%
ACAAACACATCATAACATAG+AGG + chr1_1:67068240-67068259 Msa0037880:intron 30.0%
AACATAGAGGTGAAAATAAG+AGG + chr1_1:67068253-67068272 Msa0037880:intron 30.0%
TGAAAATAAGAGGACCTAAA+GGG + chr1_1:67068263-67068282 Msa0037880:intron 30.0%
GTTTGTCATACAAAGTGATA+GGG + chr1_1:67068521-67068540 Msa0037880:intron 30.0%
TTTGTCATACAAAGTGATAG+GGG + chr1_1:67068522-67068541 Msa0037880:intron 30.0%
! ATAAAGATGAGTTGAATGAG+TGG + chr1_1:67068669-67068688 Msa0037880:intron 30.0%
ATCCAATTTACTCTTCTTAC+AGG - chr1_1:67068828-67068847 None:intergenic 30.0%
TGTAAGAAGAGTAAATTGGA+TGG + chr1_1:67068827-67068846 Msa0037880:intron 30.0%
AGTCCAATTGTTATAGACAA+AGG + chr1_1:67068855-67068874 Msa0037880:intron 30.0%
GTCCAATTGTTATAGACAAA+GGG + chr1_1:67068856-67068875 Msa0037880:intron 30.0%
ATTGAACAACTCTAGGTAAT+TGG + chr1_1:67069109-67069128 Msa0037880:intron 30.0%
TTTCACATTTGTCATTCTGA+TGG + chr1_1:67069214-67069233 Msa0037880:intron 30.0%
TCATGTGTATGTTTCACTAA+AGG + chr1_1:67069262-67069281 Msa0037880:intron 30.0%
CATGTGTATGTTTCACTAAA+GGG + chr1_1:67069263-67069282 Msa0037880:intron 30.0%
TAATATGATATCCGTGAAAG+GGG - chr1_1:67069470-67069489 None:intergenic 30.0%
! ATTTGATTTCCTGTTGTTGA+TGG + chr1_1:67069572-67069591 Msa0037880:intron 30.0%
ACTAAGAAAGTGAATGCAAA+AGG - chr1_1:67069786-67069805 None:intergenic 30.0%
! TTTTCGATTCTTCTGTACAA+TGG + chr1_1:67069963-67069982 Msa0037880:three_prime_UTR 30.0%
ATATACAAAATTCAGAGGGA+AGG + chr1_1:67069990-67070009 Msa0037880:three_prime_UTR 30.0%
! ATATTGTGTTCATCCTTTTC+AGG + chr1_1:67070067-67070086 Msa0037880:three_prime_UTR 30.0%
! ACGATGTATTTTCAGTGGTT+TGG + chr1_1:67066264-67066283 Msa0037880:intron 35.0%
CTCTTCTAATATAGGGTTTC+AGG + chr1_1:67066381-67066400 Msa0037880:CDS 35.0%
CTACTAAATATGCAATTCCC+TGG - chr1_1:67066856-67066875 None:intergenic 35.0%
AGCAGATATAGTGAAGAAGA+AGG + chr1_1:67067131-67067150 Msa0037880:CDS 35.0%
!!! GCCGAAGGTTTTCTTATTTT+AGG + chr1_1:67067339-67067358 Msa0037880:intron 35.0%
! TTATTGAATTTGGTGAGGTG+GGG + chr1_1:67067424-67067443 Msa0037880:intron 35.0%
AAACCAGCTTTGCTTATGTT+TGG + chr1_1:67067703-67067722 Msa0037880:intron 35.0%
AACCAGCTTTGCTTATGTTT+GGG + chr1_1:67067704-67067723 Msa0037880:intron 35.0%
! GAGAATCTAGAGAGGTTTTA+TGG + chr1_1:67067838-67067857 Msa0037880:intron 35.0%
!! ATCTAGAGAGGTTTTATGGA+AGG + chr1_1:67067842-67067861 Msa0037880:intron 35.0%
CTATCTATCTCTATCTCTCT+TGG - chr1_1:67068121-67068140 None:intergenic 35.0%
GTGAAAATAAGAGGACCTAA+AGG + chr1_1:67068262-67068281 Msa0037880:intron 35.0%
GAAAATAAGAGGACCTAAAG+GGG + chr1_1:67068264-67068283 Msa0037880:intron 35.0%
TTCTCACATTTGTAGTACCT+TGG + chr1_1:67068498-67068517 Msa0037880:intron 35.0%
TCTCACATTTGTAGTACCTT+GGG + chr1_1:67068499-67068518 Msa0037880:intron 35.0%
GGTTTGTCATACAAAGTGAT+AGG + chr1_1:67068520-67068539 Msa0037880:intron 35.0%
GGTAGCCTTTATAATAGAGA+TGG + chr1_1:67068750-67068769 Msa0037880:intron 35.0%
CACCTGTAAGAAGAGTAAAT+TGG + chr1_1:67068823-67068842 Msa0037880:intron 35.0%
CTCCCTTTGTCTATAACAAT+TGG - chr1_1:67068861-67068880 None:intergenic 35.0%
TTTGTCATTCTGATGGTACT+TGG + chr1_1:67069221-67069240 Msa0037880:intron 35.0%
ACTATCCTGTATTGAATCAG+TGG + chr1_1:67069408-67069427 Msa0037880:intron 35.0%
CTATCCTGTATTGAATCAGT+GGG + chr1_1:67069409-67069428 Msa0037880:intron 35.0%
GATATCAACTCGAATTACTG+CGG + chr1_1:67069542-67069561 Msa0037880:intron 35.0%
AATTGAAGTCCATCAACAAC+AGG - chr1_1:67069584-67069603 None:intergenic 35.0%
! GATGGACTTCAATTGATTTC+AGG + chr1_1:67069590-67069609 Msa0037880:intron 35.0%
! AAGCCAAAGCACTTTCTAAA+CGG + chr1_1:67069631-67069650 Msa0037880:CDS 35.0%
TGAAAAGAAGATGCAAGAGA+AGG + chr1_1:67069674-67069693 Msa0037880:CDS 35.0%
CTATATCCTGTAAGTATCCT+GGG - chr1_1:67069859-67069878 None:intergenic 35.0%
!!! TTTTAAAACCAGGAAGGACA+TGG - chr1_1:67070026-67070045 None:intergenic 35.0%
ATGTGTCAAATGTGCAAGTA+TGG + chr1_1:67070177-67070196 Msa0037880:three_prime_UTR 35.0%
CTTGTGTAAATCCATAGCCA+TGG + chr1_1:67066324-67066343 Msa0037880:exon 40.0%
TAAACTCGACGTTTCTTCCA+TGG - chr1_1:67066344-67066363 None:intergenic 40.0%
!! CTGTAGCTTTTGAAGAAGCA+TGG + chr1_1:67066503-67066522 Msa0037880:intron 40.0%
!! AGCTTTTGAAGAAGCATGGT+TGG + chr1_1:67066507-67066526 Msa0037880:intron 40.0%
! AAGAAGCATGGTTGGAAAGA+AGG + chr1_1:67066515-67066534 Msa0037880:CDS 40.0%
! AGAAGCATGGTTGGAAAGAA+GGG + chr1_1:67066516-67066535 Msa0037880:CDS 40.0%
ACGATACTATCATGTCTGTG+CGG + chr1_1:67066648-67066667 Msa0037880:intron 40.0%
ATTCAGGGACTAATTTGACC+AGG + chr1_1:67066835-67066854 Msa0037880:intron 40.0%
TTCAGGGACTAATTTGACCA+GGG + chr1_1:67066836-67066855 Msa0037880:intron 40.0%
GTTAATTGATGGAACGCCTA+AGG + chr1_1:67066905-67066924 Msa0037880:intron 40.0%
TTCTTTACACGAGTTTCCAC+AGG - chr1_1:67067093-67067112 None:intergenic 40.0%
AAGGTTGTGAAACCTGATCA+CGG + chr1_1:67067150-67067169 Msa0037880:CDS 40.0%
TACCTGCTTATTGTCTCCTT+TGG - chr1_1:67067184-67067203 None:intergenic 40.0%
! GCTTTTGTTCTCAAGGGTTT+TGG + chr1_1:67067219-67067238 Msa0037880:intron 40.0%
!! ACGGTGCTGAGTTTTTCATT+TGG + chr1_1:67067295-67067314 Msa0037880:intron 40.0%
AAATTTGCAATAGCTGCCGA+AGG + chr1_1:67067324-67067343 Msa0037880:intron 40.0%
! TTAGGTAGTACTAGCTTGTC+AGG + chr1_1:67067357-67067376 Msa0037880:intron 40.0%
! TATTGAATTTGGTGAGGTGG+GGG + chr1_1:67067425-67067444 Msa0037880:intron 40.0%
GCAAGATAGAGAATCTAGAG+AGG + chr1_1:67067830-67067849 Msa0037880:intron 40.0%
! TTGCGACAATCTTTAGAAGC+AGG + chr1_1:67068160-67068179 Msa0037880:intron 40.0%
GGCAATATTGGGAGTTCTTA+TGG - chr1_1:67068327-67068346 None:intergenic 40.0%
AGTGCAGAAGTGGCAATATT+GGG - chr1_1:67068338-67068357 None:intergenic 40.0%
AAGTGCAGAAGTGGCAATAT+TGG - chr1_1:67068339-67068358 None:intergenic 40.0%
GTTTGTATGAAGTGCAGAAG+TGG - chr1_1:67068348-67068367 None:intergenic 40.0%
CACTTTGTATGACAAACCCA+AGG - chr1_1:67068518-67068537 None:intergenic 40.0%
! AATCCCGACTTATGGTGTTT+TGG + chr1_1:67068776-67068795 Msa0037880:intron 40.0%
! ATCCCGACTTATGGTGTTTT+GGG + chr1_1:67068777-67068796 Msa0037880:intron 40.0%
ATGCCCAAAACACCATAAGT+CGG - chr1_1:67068783-67068802 None:intergenic 40.0%
TTATAGACAAAGGGAGACCA+AGG + chr1_1:67068865-67068884 Msa0037880:intron 40.0%
! GTCAGGTCTATCATTTTCCT+TGG - chr1_1:67068885-67068904 None:intergenic 40.0%
GAGTCTGCTACAAAGATCAA+TGG - chr1_1:67068974-67068993 None:intergenic 40.0%
TTGTAGCAGACTCTACATAG+TGG + chr1_1:67068981-67069000 Msa0037880:intron 40.0%
TGTAGCAGACTCTACATAGT+GGG + chr1_1:67068982-67069001 Msa0037880:intron 40.0%
! AGACTCTACATAGTGGGAAA+AGG + chr1_1:67068988-67069007 Msa0037880:intron 40.0%
TTCAGAGAGAAAAAAGGGGA+GGG - chr1_1:67069180-67069199 None:intergenic 40.0%
TTTCAGAGAGAAAAAAGGGG+AGG - chr1_1:67069181-67069200 None:intergenic 40.0%
! AGCCAAAGCACTTTCTAAAC+GGG + chr1_1:67069632-67069651 Msa0037880:CDS 40.0%
TTTCAAAGTCGTGTGCAAGT+TGG + chr1_1:67069817-67069836 Msa0037880:three_prime_UTR 40.0%
! TGTTTTCCCAGGATACTTAC+AGG + chr1_1:67069850-67069869 Msa0037880:three_prime_UTR 40.0%
CCTATATCCTGTAAGTATCC+TGG - chr1_1:67069860-67069879 None:intergenic 40.0%
CCAGGATACTTACAGGATAT+AGG + chr1_1:67069857-67069876 Msa0037880:three_prime_UTR 40.0%
TTCAGAGGGAAGGTAATGAT+AGG + chr1_1:67070000-67070019 Msa0037880:three_prime_UTR 40.0%
TAGTGGTTGAAGTCCTGAAA+AGG - chr1_1:67070083-67070102 None:intergenic 40.0%
AACTCATCCAAAACCCATAC+GGG - chr1_1:67070216-67070235 None:intergenic 40.0%
CAACTCATCCAAAACCCATA+CGG - chr1_1:67070217-67070236 None:intergenic 40.0%
CGATACTATCATGTCTGTGC+GGG + chr1_1:67066649-67066668 Msa0037880:intron 45.0%
ATGGGGGAAGCTACCTTTAA+GGG + chr1_1:67066739-67066758 Msa0037880:intron 45.0%
ACAGGGTAGATTAGAACCTG+TGG + chr1_1:67067074-67067093 Msa0037880:intron 45.0%
CTGCTTATTGTCTCCTTTGG+AGG - chr1_1:67067181-67067200 None:intergenic 45.0%
CTCCAAAGGAGACAATAAGC+AGG + chr1_1:67067179-67067198 Msa0037880:CDS 45.0%
CTCCCAAACATAAGCAAAGC+TGG - chr1_1:67067709-67067728 None:intergenic 45.0%
! CGACAATCTTTAGAAGCAGG+TGG + chr1_1:67068163-67068182 Msa0037880:intron 45.0%
CTGACATTGTATGCCCCTTT+AGG - chr1_1:67068280-67068299 None:intergenic 45.0%
GATGGTAGAATCCCGACTTA+TGG + chr1_1:67068768-67068787 Msa0037880:intron 45.0%
TGCCCAAAACACCATAAGTC+GGG - chr1_1:67068782-67068801 None:intergenic 45.0%
TCAGAGAGAAAAAAGGGGAG+GGG - chr1_1:67069179-67069198 None:intergenic 45.0%
!! CTGTCCCACTGATTCAATAC+AGG - chr1_1:67069416-67069435 None:intergenic 45.0%
!! CACCCGTTTAGAAAGTGCTT+TGG - chr1_1:67069637-67069656 None:intergenic 45.0%
! GCGCTTTCTTTAGAGAGTTC+TGG + chr1_1:67069706-67069725 Msa0037880:CDS 45.0%
!! GGAAGTGTCTTTAGAGCTAG+TGG - chr1_1:67070100-67070119 None:intergenic 45.0%
!! TTCTTGAGAGTACCCCGTAT+GGG + chr1_1:67070200-67070219 Msa0037880:three_prime_UTR 45.0%
ACTCATCCAAAACCCATACG+GGG - chr1_1:67070215-67070234 None:intergenic 45.0%
!!! CGTATGGGTTTTGGATGAGT+TGG + chr1_1:67070215-67070234 Msa0037880:three_prime_UTR 45.0%
!! AAATTCAATAAAATAAAATA+AGG - chr1_1:67067415-67067434 None:intergenic 5.0%
!!! TTATTTTATTTTATTGAATT+TGG + chr1_1:67067414-67067433 Msa0037880:intron 5.0%
!! AATTAAAAATATATTTAAAG+TGG + chr1_1:67068369-67068388 Msa0037880:intron 5.0%
!!! ATTAAAAATATATTTAAAGT+GGG + chr1_1:67068370-67068389 Msa0037880:intron 5.0%
GAAGAGAAGAGACAGAGAGG+AGG + chr1_1:67066089-67066108 Msa0037880:five_prime_UTR 50.0%
CGACGTTTCTTCCATGGCTA+TGG - chr1_1:67066338-67066357 None:intergenic 50.0%
CATGGTTGGAAAGAAGGGAC+TGG + chr1_1:67066521-67066540 Msa0037880:CDS 50.0%
!! TGGAAAGAAGGGACTGGTCT+TGG + chr1_1:67066527-67066546 Msa0037880:CDS 50.0%
! TGGTCTTGGAATCTCTGAGC+AGG + chr1_1:67066541-67066560 Msa0037880:CDS 50.0%
! CTTCTGATCGAAGGCGTGTT+CGG - chr1_1:67066695-67066714 None:intergenic 50.0%
! ACGCCTTCGATCAGAAGTGT+CGG + chr1_1:67066698-67066717 Msa0037880:intron 50.0%
!! TGCCTTTGAAGTCCCTGGAT+GGG + chr1_1:67066721-67066740 Msa0037880:intron 50.0%
GATGGGGGAAGCTACCTTTA+AGG + chr1_1:67066738-67066757 Msa0037880:intron 50.0%
TTGGAGGAATCACCGTGATC+AGG - chr1_1:67067165-67067184 None:intergenic 50.0%
GATCACGGTGATTCCTCCAA+AGG + chr1_1:67067165-67067184 Msa0037880:CDS 50.0%
!! GTGGGGGTTGGTATAGTACT+TGG + chr1_1:67067441-67067460 Msa0037880:intron 50.0%
CAGAGAGAAAAAAGGGGAGG+GGG - chr1_1:67069178-67069197 None:intergenic 50.0%
CAAGGGAAAAGCCCCTTTCA+CGG + chr1_1:67069456-67069475 Msa0037880:intron 50.0%
! GTGTGCAAGTTGGATCTCGA+AGG + chr1_1:67069827-67069846 Msa0037880:three_prime_UTR 50.0%
!!! GATCTCGAAGGTGTTTTCCC+AGG + chr1_1:67069839-67069858 Msa0037880:three_prime_UTR 50.0%
ATGATAGGCCATGTCCTTCC+TGG + chr1_1:67070015-67070034 Msa0037880:three_prime_UTR 50.0%
!! GTTCTTGAGAGTACCCCGTA+TGG + chr1_1:67070199-67070218 Msa0037880:three_prime_UTR 50.0%
!! AGAGTACCCCGTATGGGTTT+TGG + chr1_1:67070206-67070225 Msa0037880:three_prime_UTR 50.0%
! GCACCGACACTTCTGATCGA+AGG - chr1_1:67066704-67066723 None:intergenic 55.0%
!! GTGCCTTTGAAGTCCCTGGA+TGG + chr1_1:67066720-67066739 Msa0037880:intron 55.0%
!! GCCTTTGAAGTCCCTGGATG+GGG + chr1_1:67066722-67066741 Msa0037880:intron 55.0%
!! CCTTTGAAGTCCCTGGATGG+GGG + chr1_1:67066723-67066742 Msa0037880:intron 55.0%
AAGGTAGCTTCCCCCATCCA+GGG - chr1_1:67066736-67066755 None:intergenic 55.0%
AAAGGTAGCTTCCCCCATCC+AGG - chr1_1:67066737-67066756 None:intergenic 55.0%
! GAATTTGGTGAGGTGGGGGT+TGG + chr1_1:67067429-67067448 Msa0037880:intron 55.0%
GGGGTGACGTTGCACAATAG+TGG + chr1_1:67068390-67068409 Msa0037880:intron 55.0%
!! GTCGGTGCCTTTGAAGTCCC+TGG + chr1_1:67066716-67066735 Msa0037880:intron 60.0%
CCCCCATCCAGGGACTTCAA+AGG - chr1_1:67066726-67066745 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67066087 67070349 67066087 ID=Msa0037880;Name=Msa0037880
chr1_1 mRNA 67066087 67070349 67066087 ID=Msa0037880-mRNA-1;Parent=Msa0037880;Name=Msa0037880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=103|1|1|1|0.75|0.6|5|606|122
chr1_1 exon 67066087 67066164 67066087 ID=Msa0037880-mRNA-1:exon:21685;Parent=Msa0037880-mRNA-1
chr1_1 exon 67066318 67066402 67066318 ID=Msa0037880-mRNA-1:exon:21686;Parent=Msa0037880-mRNA-1
chr1_1 exon 67066509 67066562 67066509 ID=Msa0037880-mRNA-1:exon:21687;Parent=Msa0037880-mRNA-1
chr1_1 exon 67067078 67067200 67067078 ID=Msa0037880-mRNA-1:exon:21688;Parent=Msa0037880-mRNA-1
chr1_1 exon 67069612 67070349 67069612 ID=Msa0037880-mRNA-1:exon:21689;Parent=Msa0037880-mRNA-1
chr1_1 five_prime_UTR 67066087 67066164 67066087 ID=Msa0037880-mRNA-1:five_prime_utr;Parent=Msa0037880-mRNA-1
chr1_1 five_prime_UTR 67066318 67066342 67066318 ID=Msa0037880-mRNA-1:five_prime_utr;Parent=Msa0037880-mRNA-1
chr1_1 CDS 67066343 67066402 67066343 ID=Msa0037880-mRNA-1:cds;Parent=Msa0037880-mRNA-1
chr1_1 CDS 67066509 67066562 67066509 ID=Msa0037880-mRNA-1:cds;Parent=Msa0037880-mRNA-1
chr1_1 CDS 67067078 67067200 67067078 ID=Msa0037880-mRNA-1:cds;Parent=Msa0037880-mRNA-1
chr1_1 CDS 67069612 67069743 67069612 ID=Msa0037880-mRNA-1:cds;Parent=Msa0037880-mRNA-1
chr1_1 three_prime_UTR 67069744 67070349 67069744 ID=Msa0037880-mRNA-1:three_prime_utr;Parent=Msa0037880-mRNA-1
Gene Sequence

>Msa0037880

ATGGAAGAAACGTCGAGTTTAGCAACAACAACAATCAACTCTTCTAATATAGGGTTTCAGCTTTTGAAGAAGCATGGTTGGAAAGAAGGGACTGGTCTTGGAATCTCTGAGCAGGGTAGATTAGAACCTGTGGAAACTCGTGTAAAGAATAATAAACGAGGTTTGGGAGCAGATATAGTGAAGAAGAAGGTTGTGAAACCTGATCACGGTGATTCCTCCAAAGGAGACAATAAGCAGGAACAGTTGTCTCAAAAGAAAGCCAAAGCACTTTCTAAACGGGTGAGAAAGATGCAAGAGATTGAAAAGAAGATGCAAGAGAAGGAATTCGAGCGCGCTTTCTTTAGAGAGTTCTGGCCTGAAAATGTATGA

Protein sequence

>Msa0037880

MEETSSLATTTINSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADIVKKKVVKPDHGDSSKGDNKQEQLSQKKAKALSKRVRKMQEIEKKMQEKEFERAFFREFWPENV*