Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210750 | sp|Q2V9B0|MY1R1_SOLTU | 47.387 | 287 | 111 | 9 | 13 | 269 | 21 | 297 | 1.28e-41 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210750 | A0A896WBR5 | 84.354 | 294 | 18 | 5 | 1 | 269 | 1 | 291 | 3.62e-151 | 433 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa1210750 | 0.820114 | 8.136881e-53 | -8.615850e-47 |
| Msa0024210 | Msa1210750 | 0.834929 | 2.255090e-56 | -8.615850e-47 |
| Msa0119850 | Msa1210750 | -0.801511 | 8.699017e-49 | -8.615850e-47 |
| Msa0120020 | Msa1210750 | 0.800763 | 1.237412e-48 | -8.615850e-47 |
| Msa0617640 | Msa1210750 | -0.812579 | 3.949071e-51 | -8.615850e-47 |
| Msa0657460 | Msa1210750 | 0.807641 | 4.578075e-50 | -8.615850e-47 |
| Msa0777570 | Msa1210750 | 0.800754 | 1.242549e-48 | -8.615850e-47 |
| Msa0160550 | Msa1210750 | -0.800001 | 1.768611e-48 | -8.615850e-47 |
| Msa0162770 | Msa1210750 | 0.817710 | 2.863457e-52 | -8.615850e-47 |
| Msa0228070 | Msa1210750 | -0.819413 | 1.176881e-52 | -8.615850e-47 |
| Msa0229490 | Msa1210750 | 0.814172 | 1.763739e-51 | -8.615850e-47 |
| Msa0465670 | Msa1210750 | 0.800399 | 1.467987e-48 | -8.615850e-47 |
| Msa0279210 | Msa1210750 | 0.801710 | 7.919477e-49 | -8.615850e-47 |
| Msa0336420 | Msa1210750 | -0.816905 | 4.345925e-52 | -8.615850e-47 |
| Msa1125760 | Msa1210750 | -0.810130 | 1.342962e-50 | -8.615850e-47 |
| Msa1143930 | Msa1210750 | 0.833240 | 5.973618e-56 | -8.615850e-47 |
| Msa1191470 | Msa1210750 | 0.812409 | 4.301975e-51 | -8.615850e-47 |
| Msa1210660 | Msa1210750 | 0.930643 | 1.214577e-93 | -8.615850e-47 |
| Msa1210750 | Msa1217430 | 0.806777 | 6.977495e-50 | -8.615850e-47 |
| Msa1210750 | Msa1237940 | -0.808652 | 2.788399e-50 | -8.615850e-47 |
| Msa1210750 | Msa1259490 | 0.944478 | 1.811125e-103 | -8.615850e-47 |
| Msa1210750 | Msa1299180 | 0.895056 | 1.376967e-75 | -8.615850e-47 |
| Msa1210750 | Msa1302190 | 0.831068 | 2.058447e-55 | -8.615850e-47 |
| Msa1210750 | Msa1425010 | -0.816673 | 4.898801e-52 | -8.615850e-47 |
| Msa1210750 | Msa1444310 | -0.811277 | 7.589344e-51 | -8.615850e-47 |
| Msa1210750 | Msa1453780 | 0.813794 | 2.136778e-51 | -8.615850e-47 |
| Msa0553220 | Msa1210750 | 0.815424 | 9.310773e-52 | -8.615850e-47 |
| Msa0585000 | Msa1210750 | 0.810689 | 1.017591e-50 | -8.615850e-47 |
| Msa0589190 | Msa1210750 | -0.804288 | 2.321407e-49 | -8.615850e-47 |
| Msa0942560 | Msa1210750 | 0.802214 | 6.239845e-49 | -8.615850e-47 |
| Msa0968680 | Msa1210750 | -0.810596 | 1.065439e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210750 | MtrunA17_Chr4g0059701 | 85.374 | 294 | 11 | 6 | 1 | 269 | 1 | 287 | 8.83e-153 | 427 |
| Msa1210750 | MtrunA17_Chr5g0415191 | 45.946 | 185 | 46 | 6 | 6 | 154 | 19 | 185 | 2.82e-28 | 110 |
| Msa1210750 | MtrunA17_Chr4g0055931 | 45.775 | 142 | 48 | 5 | 18 | 134 | 25 | 162 | 3.14e-28 | 110 |
| Msa1210750 | MtrunA17_Chr2g0331031 | 36.316 | 190 | 60 | 6 | 3 | 146 | 15 | 189 | 4.71e-24 | 99.4 |
| Msa1210750 | MtrunA17_Chr3g0092621 | 55.952 | 84 | 15 | 2 | 88 | 149 | 84 | 167 | 2.45e-19 | 82.8 |
| Msa1210750 | MtrunA17_Chr6g0488471 | 38.095 | 147 | 54 | 5 | 13 | 131 | 24 | 161 | 1.86e-17 | 80.1 |
| Msa1210750 | MtrunA17_Chr3g0104071 | 43.617 | 94 | 28 | 2 | 76 | 144 | 135 | 228 | 7.51e-17 | 79.0 |
| Msa1210750 | MtrunA17_Chr4g0062741 | 50.000 | 74 | 16 | 1 | 81 | 133 | 131 | 204 | 1.29e-16 | 78.2 |
| Msa1210750 | MtrunA17_Chr1g0210471 | 42.718 | 103 | 36 | 3 | 81 | 160 | 117 | 219 | 2.06e-16 | 76.6 |
| Msa1210750 | MtrunA17_Chr1g0162081 | 36.975 | 119 | 49 | 2 | 81 | 173 | 115 | 233 | 2.51e-16 | 77.0 |
| Msa1210750 | MtrunA17_Chr8g0389241 | 50.704 | 71 | 13 | 2 | 82 | 131 | 99 | 168 | 1.47e-15 | 74.7 |
| Msa1210750 | MtrunA17_Chr5g0429521 | 45.679 | 81 | 23 | 1 | 78 | 137 | 122 | 202 | 4.77e-15 | 73.6 |
| Msa1210750 | MtrunA17_Chr7g0241761 | 34.783 | 115 | 51 | 2 | 76 | 166 | 128 | 242 | 3.76e-14 | 71.2 |
| Msa1210750 | MtrunA17_Chr5g0436501 | 42.353 | 85 | 26 | 2 | 76 | 137 | 113 | 197 | 5.70e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210750 | AT1G74840.1 | 48.684 | 228 | 75 | 9 | 8 | 208 | 16 | 228 | 3.72e-40 | 140 |
| Msa1210750 | AT1G74840.2 | 54.167 | 192 | 57 | 7 | 8 | 173 | 16 | 202 | 1.21e-39 | 138 |
| Msa1210750 | AT1G19000.2 | 50.838 | 179 | 50 | 5 | 1 | 144 | 4 | 179 | 1.53e-32 | 121 |
| Msa1210750 | AT1G19000.1 | 50.838 | 179 | 50 | 5 | 1 | 144 | 4 | 179 | 1.53e-32 | 121 |
| Msa1210750 | AT5G47390.1 | 42.857 | 161 | 61 | 4 | 18 | 152 | 25 | 180 | 2.72e-31 | 119 |
| Msa1210750 | AT1G70000.1 | 50.292 | 171 | 42 | 7 | 5 | 147 | 23 | 178 | 1.15e-28 | 110 |
| Msa1210750 | AT1G70000.2 | 50.292 | 171 | 42 | 7 | 5 | 147 | 23 | 178 | 1.15e-28 | 110 |
| Msa1210750 | AT3G16350.1 | 36.019 | 211 | 84 | 8 | 18 | 186 | 49 | 250 | 7.52e-20 | 88.6 |
| Msa1210750 | AT1G49010.1 | 51.351 | 74 | 15 | 1 | 81 | 133 | 127 | 200 | 7.73e-17 | 79.3 |
| Msa1210750 | AT5G58900.1 | 36.522 | 115 | 46 | 2 | 76 | 169 | 129 | 237 | 1.46e-16 | 78.2 |
| Msa1210750 | AT2G38090.1 | 44.444 | 90 | 29 | 1 | 65 | 133 | 118 | 207 | 2.29e-16 | 77.8 |
| Msa1210750 | AT5G04760.1 | 44.828 | 87 | 26 | 2 | 76 | 140 | 87 | 173 | 3.27e-16 | 75.9 |
| Msa1210750 | AT5G61620.1 | 31.383 | 188 | 77 | 7 | 4 | 156 | 22 | 192 | 2.85e-15 | 74.7 |
| Msa1210750 | AT5G08520.1 | 47.297 | 74 | 18 | 1 | 81 | 133 | 111 | 184 | 3.72e-15 | 74.3 |
| Msa1210750 | AT5G56840.1 | 41.748 | 103 | 27 | 5 | 63 | 143 | 73 | 164 | 1.12e-13 | 68.9 |
| Msa1210750 | AT5G01200.1 | 45.946 | 74 | 19 | 1 | 81 | 133 | 139 | 212 | 4.34e-13 | 67.8 |
| Msa1210750 | AT5G05790.2 | 42.500 | 80 | 25 | 1 | 75 | 133 | 118 | 197 | 1.31e-12 | 66.6 |
| Msa1210750 | AT5G05790.1 | 42.500 | 80 | 25 | 1 | 75 | 133 | 118 | 197 | 1.31e-12 | 66.6 |
| Msa1210750 | AT3G11280.2 | 42.500 | 80 | 25 | 1 | 75 | 133 | 114 | 193 | 1.59e-12 | 66.2 |
| Msa1210750 | AT3G11280.1 | 42.500 | 80 | 25 | 1 | 75 | 133 | 114 | 193 | 1.59e-12 | 66.2 |
Find 62 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTTCGCGGTCGCGGTTTC+TGG | 0.130907 | 8_1:+69961300 | None:intergenic |
| AACTCATATACTGACATAAA+AGG | 0.288173 | 8_1:+69960226 | None:intergenic |
| ATGCCATGTTTCAATAATAA+TGG | 0.319591 | 8_1:-69959965 | Msa1210750:CDS |
| ATCAGACACAATGGAAGCTT+TGG | 0.326101 | 8_1:+69960090 | None:intergenic |
| GGAAGAGCACAAGCTGTTCT+TGG | 0.356599 | 8_1:-69961157 | Msa1210750:CDS |
| TTGACCTGTTCTTCCTCCAT+TGG | 0.357105 | 8_1:+69960310 | None:intergenic |
| AATTGAATAGATTGTTGGTT+TGG | 0.361654 | 8_1:+69960137 | None:intergenic |
| GTCATCGGCGGAGGCGTAAC+CGG | 0.383661 | 8_1:+69961342 | None:intergenic |
| CTCGTTTACGTTCGCGGTCG+CGG | 0.408987 | 8_1:+69961293 | None:intergenic |
| TGGAACCTCGTTTACGTTCG+CGG | 0.412917 | 8_1:+69961287 | None:intergenic |
| AATTGAATTGAATAGATTGT+TGG | 0.420883 | 8_1:+69960132 | None:intergenic |
| TTTATGTCAGTATATGAGTT+GGG | 0.444220 | 8_1:-69960223 | Msa1210750:CDS |
| ACCGCAGACTCCACCGTCTC+CGG | 0.449707 | 8_1:-69961511 | Msa1210750:CDS |
| AATTCCAATGGAGGAAGAAC+AGG | 0.463202 | 8_1:-69960314 | Msa1210750:CDS |
| TCAGACACAATGGAAGCTTT+GGG | 0.470464 | 8_1:+69960091 | None:intergenic |
| TGGAGGGTCAATGGATGAAC+TGG | 0.479134 | 8_1:+69960054 | None:intergenic |
| GGAAAGTGTTGGAGGGTCAA+TGG | 0.479524 | 8_1:+69960045 | None:intergenic |
| GAGCACAAGCTGTTCTTGGT+TGG | 0.483963 | 8_1:-69961153 | Msa1210750:CDS |
| CCAATGGAAGAACTCACTCT+TGG | 0.488703 | 8_1:-69960184 | Msa1210750:CDS |
| AGGAACGGCGTCATCGGCGG+AGG | 0.501551 | 8_1:+69961333 | None:intergenic |
| TCCGGCGAATTCATGCTCTT+CGG | 0.514098 | 8_1:-69961493 | Msa1210750:CDS |
| CCAAGAGTGAGTTCTTCCAT+TGG | 0.515535 | 8_1:+69960184 | None:intergenic |
| GAGCATGAATTCGCCGGAGA+CGG | 0.519327 | 8_1:+69961498 | None:intergenic |
| TTTCCTTCTCGTCCGATCAA+AGG | 0.521674 | 8_1:-69960015 | Msa1210750:CDS |
| GACCCTCCAACACTTTCCCT+CGG | 0.522607 | 8_1:-69960040 | Msa1210750:CDS |
| TTGGGATCTGAAACAACAAA+AGG | 0.525424 | 8_1:+69960109 | None:intergenic |
| TGGATCAGGGATTCCGTGGA+CGG | 0.525462 | 8_1:-69961181 | Msa1210750:intron |
| TGATGATGTCTTCCTTTGAT+CGG | 0.527840 | 8_1:+69960003 | None:intergenic |
| ATGATGTTGTTGTTGTCTTG+AGG | 0.532951 | 8_1:+69961400 | None:intergenic |
| GGTGGTGATATCAAAGAGAC+TGG | 0.540239 | 8_1:+69960893 | None:intergenic |
| TTGTGCTCTTCCTCCGTCCA+CGG | 0.546086 | 8_1:+69961168 | None:intergenic |
| AGTCCGAGGGAAAGTGTTGG+AGG | 0.562456 | 8_1:+69960037 | None:intergenic |
| TTCGCGGTCGCGGTTTCTGG+CGG | 0.563265 | 8_1:+69961303 | None:intergenic |
| CATGAATTCGCCGGAGACGG+TGG | 0.565729 | 8_1:+69961501 | None:intergenic |
| TCAGGTATCTGCAATTCCAA+TGG | 0.575185 | 8_1:-69960326 | Msa1210750:intron |
| CTTCCTTTGATCGGACGAGA+AGG | 0.575650 | 8_1:+69960012 | None:intergenic |
| GCCGGAGACGGTGGAGTCTG+CGG | 0.589898 | 8_1:+69961510 | None:intergenic |
| TTGAGGAACGGCGTCATCGG+CGG | 0.592610 | 8_1:+69961330 | None:intergenic |
| TATCAAAGAGACTGGATCTA+CGG | 0.592657 | 8_1:+69960901 | None:intergenic |
| CGTTAATGAGAGTACTCCAA+TGG | 0.593695 | 8_1:-69960200 | Msa1210750:CDS |
| TCCGAAGAGCATGAATTCGC+CGG | 0.594213 | 8_1:+69961492 | None:intergenic |
| AGACAACAACAACATCATCA+AGG | 0.604820 | 8_1:-69961395 | Msa1210750:CDS |
| TCTCCATTATTATTGAAACA+TGG | 0.609269 | 8_1:+69959962 | None:intergenic |
| AACAAAGACGTTATCACCGC+CGG | 0.612643 | 8_1:-69961361 | Msa1210750:CDS |
| AATGGATGAACTGGAACTAG+AGG | 0.623042 | 8_1:+69960063 | None:intergenic |
| GAAGAACTCACTCTTGGACA+AGG | 0.624406 | 8_1:-69960178 | Msa1210750:CDS |
| ATCGGCGGAGGCGTAACCGG+CGG | 0.626944 | 8_1:+69961345 | None:intergenic |
| CAGAAAAGTTACCGTGTCGG+TGG | 0.629241 | 8_1:+69960875 | None:intergenic |
| GGCGATTGAGATTACTTCGG+CGG | 0.629813 | 8_1:+69960928 | None:intergenic |
| CGCGACCGCGAACGTAAACG+AGG | 0.635630 | 8_1:-69961292 | Msa1210750:intron |
| CTTTGATATCACCACCGACA+CGG | 0.638033 | 8_1:-69960886 | Msa1210750:intron |
| GTCCGAGGGAAAGTGTTGGA+GGG | 0.638496 | 8_1:+69960038 | None:intergenic |
| GAAAGTCCGAGGGAAAGTGT+TGG | 0.638503 | 8_1:+69960034 | None:intergenic |
| TGCCAGAAAAGTTACCGTGT+CGG | 0.638678 | 8_1:+69960872 | None:intergenic |
| CGGACGAGAAGGAAAGTCCG+AGG | 0.639721 | 8_1:+69960023 | None:intergenic |
| GACGGCGATTGAGATTACTT+CGG | 0.641222 | 8_1:+69960925 | None:intergenic |
| GGTATCTGCAATTCCAATGG+AGG | 0.648622 | 8_1:-69960323 | Msa1210750:CDS |
| AGAGGTGATATCAGACACAA+TGG | 0.652354 | 8_1:+69960081 | None:intergenic |
| GGACGAGAAGGAAAGTCCGA+GGG | 0.654533 | 8_1:+69960024 | None:intergenic |
| GGAGACGGTGGAGTCTGCGG+TGG | 0.660956 | 8_1:+69961513 | None:intergenic |
| ATCAGGGATTCCGTGGACGG+AGG | 0.665588 | 8_1:-69961178 | Msa1210750:intron |
| AGAGACTGGATCTACGGCGA+CGG | 0.684123 | 8_1:+69960907 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTCTCTCTTATTTAT+TGG | - | chr8_1:69960705-69960724 | Msa1210750:intron | 15.0% |
| !!! | CTTTTTTTTTTTTTTTTGTG+TGG | - | chr8_1:69960795-69960814 | Msa1210750:intron | 15.0% |
| !! | GTGATATAAGATTAATATAT+AGG | - | chr8_1:69960864-69960883 | Msa1210750:intron | 15.0% |
| !!! | TAATTTTCTCTCTTATTTAT+TGG | - | chr8_1:69960705-69960724 | Msa1210750:intron | 15.0% |
| !!! | CTTTTTTTTTTTTTTTTGTG+TGG | - | chr8_1:69960795-69960814 | Msa1210750:intron | 15.0% |
| !! | GTGATATAAGATTAATATAT+AGG | - | chr8_1:69960864-69960883 | Msa1210750:intron | 15.0% |
| !! | AATGCTATTAAAGATTGTAA+AGG | - | chr8_1:69960745-69960764 | Msa1210750:intron | 20.0% |
| !! | AAGGAAACAAAAAAATACAA+TGG | - | chr8_1:69960764-69960783 | Msa1210750:intron | 20.0% |
| !! | AGATTTCTTAACAACTATAA+AGG | + | chr8_1:69960825-69960844 | None:intergenic | 20.0% |
| !! | ATAAGATATATATCAACTCT+TGG | + | chr8_1:69960931-69960950 | None:intergenic | 20.0% |
| !! | AATTGAATTGAATAGATTGT+TGG | + | chr8_1:69961340-69961359 | None:intergenic | 20.0% |
| !! | AATGCTATTAAAGATTGTAA+AGG | - | chr8_1:69960745-69960764 | Msa1210750:intron | 20.0% |
| !! | AAGGAAACAAAAAAATACAA+TGG | - | chr8_1:69960764-69960783 | Msa1210750:intron | 20.0% |
| !! | AGATTTCTTAACAACTATAA+AGG | + | chr8_1:69960825-69960844 | None:intergenic | 20.0% |
| !! | ATAAGATATATATCAACTCT+TGG | + | chr8_1:69960931-69960950 | None:intergenic | 20.0% |
| !! | AATTGAATTGAATAGATTGT+TGG | + | chr8_1:69961340-69961359 | None:intergenic | 20.0% |
| !!! | GTGATTATCGTTATTGATTT+TGG | - | chr8_1:69960268-69960287 | Msa1210750:CDS | 25.0% |
| ! | TAGTTACTAATCAATAGAGT+AGG | - | chr8_1:69960657-69960676 | Msa1210750:intron | 25.0% |
| ! | TAATCAATAGAGTAGGATTA+TGG | - | chr8_1:69960664-69960683 | Msa1210750:intron | 25.0% |
| ! | GAAATCTAACAAAACTAGAA+TGG | - | chr8_1:69960838-69960857 | Msa1210750:intron | 25.0% |
| ! | CTTATAATAGTTGATCTATC+TGG | - | chr8_1:69960946-69960965 | Msa1210750:CDS | 25.0% |
| ! | TTGTTTATACTTAGTAACAG+AGG | + | chr8_1:69960987-69961006 | None:intergenic | 25.0% |
| ! | AACTCATATACTGACATAAA+AGG | + | chr8_1:69961246-69961265 | None:intergenic | 25.0% |
| !! | TTTTATGTCAGTATATGAGT+TGG | - | chr8_1:69961245-69961264 | Msa1210750:intron | 25.0% |
| ! | TTTATGTCAGTATATGAGTT+GGG | - | chr8_1:69961246-69961265 | Msa1210750:intron | 25.0% |
| !! | AATTGAATAGATTGTTGGTT+TGG | + | chr8_1:69961335-69961354 | None:intergenic | 25.0% |
| ! | ATGCCATGTTTCAATAATAA+TGG | - | chr8_1:69961504-69961523 | Msa1210750:CDS | 25.0% |
| ! | TCTCCATTATTATTGAAACA+TGG | + | chr8_1:69961510-69961529 | None:intergenic | 25.0% |
| !!! | GTGATTATCGTTATTGATTT+TGG | - | chr8_1:69960268-69960287 | Msa1210750:CDS | 25.0% |
| ! | TAGTTACTAATCAATAGAGT+AGG | - | chr8_1:69960657-69960676 | Msa1210750:intron | 25.0% |
| ! | TAATCAATAGAGTAGGATTA+TGG | - | chr8_1:69960664-69960683 | Msa1210750:intron | 25.0% |
| ! | GAAATCTAACAAAACTAGAA+TGG | - | chr8_1:69960838-69960857 | Msa1210750:intron | 25.0% |
| ! | CTTATAATAGTTGATCTATC+TGG | - | chr8_1:69960946-69960965 | Msa1210750:CDS | 25.0% |
| ! | TTGTTTATACTTAGTAACAG+AGG | + | chr8_1:69960987-69961006 | None:intergenic | 25.0% |
| ! | AACTCATATACTGACATAAA+AGG | + | chr8_1:69961246-69961265 | None:intergenic | 25.0% |
| !! | TTTTATGTCAGTATATGAGT+TGG | - | chr8_1:69961245-69961264 | Msa1210750:intron | 25.0% |
| ! | TTTATGTCAGTATATGAGTT+GGG | - | chr8_1:69961246-69961265 | Msa1210750:intron | 25.0% |
| !! | AATTGAATAGATTGTTGGTT+TGG | + | chr8_1:69961335-69961354 | None:intergenic | 25.0% |
| ! | ATGCCATGTTTCAATAATAA+TGG | - | chr8_1:69961504-69961523 | Msa1210750:CDS | 25.0% |
| ! | TCTCCATTATTATTGAAACA+TGG | + | chr8_1:69961510-69961529 | None:intergenic | 25.0% |
| ATTGAAGAGATTGATCGAAT+TGG | + | chr8_1:69960205-69960224 | None:intergenic | 30.0% | |
| !!! | ATCGTTATTGATTTTGGATC+AGG | - | chr8_1:69960274-69960293 | Msa1210750:CDS | 30.0% |
| !!! | TCGTTATTGATTTTGGATCA+GGG | - | chr8_1:69960275-69960294 | Msa1210750:CDS | 30.0% |
| ATGCATTTCAAAGAGTTTAC+TGG | - | chr8_1:69960905-69960924 | Msa1210750:CDS | 30.0% | |
| AACAACTTTGTGTTTATGTC+AGG | - | chr8_1:69961125-69961144 | Msa1210750:intron | 30.0% | |
| !!! | TCCATTGATTTTTCTAGCTT+CGG | + | chr8_1:69961220-69961239 | None:intergenic | 30.0% |
| ATTGAAGAGATTGATCGAAT+TGG | + | chr8_1:69960205-69960224 | None:intergenic | 30.0% | |
| !!! | ATCGTTATTGATTTTGGATC+AGG | - | chr8_1:69960274-69960293 | Msa1210750:CDS | 30.0% |
| !!! | TCGTTATTGATTTTGGATCA+GGG | - | chr8_1:69960275-69960294 | Msa1210750:CDS | 30.0% |
| ATGCATTTCAAAGAGTTTAC+TGG | - | chr8_1:69960905-69960924 | Msa1210750:CDS | 30.0% | |
| AACAACTTTGTGTTTATGTC+AGG | - | chr8_1:69961125-69961144 | Msa1210750:intron | 30.0% | |
| !!! | TCCATTGATTTTTCTAGCTT+CGG | + | chr8_1:69961220-69961239 | None:intergenic | 30.0% |
| ! | ATGATGTTGTTGTTGTCTTG+AGG | + | chr8_1:69960072-69960091 | None:intergenic | 35.0% |
| AGACAACAACAACATCATCA+AGG | - | chr8_1:69960074-69960093 | Msa1210750:CDS | 35.0% | |
| TTCGATCAATCTCTTCAATC+TGG | - | chr8_1:69960206-69960225 | Msa1210750:CDS | 35.0% | |
| AGAAAGTTGGAAAAGGTGAT+TGG | - | chr8_1:69960344-69960363 | Msa1210750:intron | 35.0% | |
| TATCAAAGAGACTGGATCTA+CGG | + | chr8_1:69960571-69960590 | None:intergenic | 35.0% | |
| !!! | ATTGATTTTTCTAGCTTCGG+GGG | + | chr8_1:69961217-69961236 | None:intergenic | 35.0% |
| !!! | CATTGATTTTTCTAGCTTCG+GGG | + | chr8_1:69961218-69961237 | None:intergenic | 35.0% |
| !!! | CCATTGATTTTTCTAGCTTC+GGG | + | chr8_1:69961219-69961238 | None:intergenic | 35.0% |
| ! | TTGGGATCTGAAACAACAAA+AGG | + | chr8_1:69961363-69961382 | None:intergenic | 35.0% |
| ! | TGATGATGTCTTCCTTTGAT+CGG | + | chr8_1:69961469-69961488 | None:intergenic | 35.0% |
| ! | ATGATGTTGTTGTTGTCTTG+AGG | + | chr8_1:69960072-69960091 | None:intergenic | 35.0% |
| AGACAACAACAACATCATCA+AGG | - | chr8_1:69960074-69960093 | Msa1210750:CDS | 35.0% | |
| TTCGATCAATCTCTTCAATC+TGG | - | chr8_1:69960206-69960225 | Msa1210750:CDS | 35.0% | |
| AGAAAGTTGGAAAAGGTGAT+TGG | - | chr8_1:69960344-69960363 | Msa1210750:intron | 35.0% | |
| TATCAAAGAGACTGGATCTA+CGG | + | chr8_1:69960571-69960590 | None:intergenic | 35.0% | |
| !!! | ATTGATTTTTCTAGCTTCGG+GGG | + | chr8_1:69961217-69961236 | None:intergenic | 35.0% |
| !!! | CATTGATTTTTCTAGCTTCG+GGG | + | chr8_1:69961218-69961237 | None:intergenic | 35.0% |
| !!! | CCATTGATTTTTCTAGCTTC+GGG | + | chr8_1:69961219-69961238 | None:intergenic | 35.0% |
| ! | TTGGGATCTGAAACAACAAA+AGG | + | chr8_1:69961363-69961382 | None:intergenic | 35.0% |
| ! | TGATGATGTCTTCCTTTGAT+CGG | + | chr8_1:69961469-69961488 | None:intergenic | 35.0% |
| TTGGTTGGATTGCAGAAAGT+TGG | - | chr8_1:69960331-69960350 | Msa1210750:intron | 40.0% | |
| GGATTGCAGAAAGTTGGAAA+AGG | - | chr8_1:69960337-69960356 | Msa1210750:intron | 40.0% | |
| TCAGGTATCTGCAATTCCAA+TGG | - | chr8_1:69961143-69961162 | Msa1210750:CDS | 40.0% | |
| AATTCCAATGGAGGAAGAAC+AGG | - | chr8_1:69961155-69961174 | Msa1210750:CDS | 40.0% | |
| CCCGAAGCTAGAAAAATCAA+TGG | - | chr8_1:69961216-69961235 | Msa1210750:intron | 40.0% | |
| !! | CGTTAATGAGAGTACTCCAA+TGG | - | chr8_1:69961269-69961288 | Msa1210750:intron | 40.0% |
| TCAGACACAATGGAAGCTTT+GGG | + | chr8_1:69961381-69961400 | None:intergenic | 40.0% | |
| ATCAGACACAATGGAAGCTT+TGG | + | chr8_1:69961382-69961401 | None:intergenic | 40.0% | |
| AGAGGTGATATCAGACACAA+TGG | + | chr8_1:69961391-69961410 | None:intergenic | 40.0% | |
| AATGGATGAACTGGAACTAG+AGG | + | chr8_1:69961409-69961428 | None:intergenic | 40.0% | |
| TTGGTTGGATTGCAGAAAGT+TGG | - | chr8_1:69960331-69960350 | Msa1210750:intron | 40.0% | |
| GGATTGCAGAAAGTTGGAAA+AGG | - | chr8_1:69960337-69960356 | Msa1210750:intron | 40.0% | |
| TCAGGTATCTGCAATTCCAA+TGG | - | chr8_1:69961143-69961162 | Msa1210750:CDS | 40.0% | |
| AATTCCAATGGAGGAAGAAC+AGG | - | chr8_1:69961155-69961174 | Msa1210750:CDS | 40.0% | |
| CCCGAAGCTAGAAAAATCAA+TGG | - | chr8_1:69961216-69961235 | Msa1210750:intron | 40.0% | |
| !! | CGTTAATGAGAGTACTCCAA+TGG | - | chr8_1:69961269-69961288 | Msa1210750:intron | 40.0% |
| TCAGACACAATGGAAGCTTT+GGG | + | chr8_1:69961381-69961400 | None:intergenic | 40.0% | |
| ATCAGACACAATGGAAGCTT+TGG | + | chr8_1:69961382-69961401 | None:intergenic | 40.0% | |
| AGAGGTGATATCAGACACAA+TGG | + | chr8_1:69961391-69961410 | None:intergenic | 40.0% | |
| AATGGATGAACTGGAACTAG+AGG | + | chr8_1:69961409-69961428 | None:intergenic | 40.0% | |
| AACAAAGACGTTATCACCGC+CGG | - | chr8_1:69960108-69960127 | Msa1210750:CDS | 45.0% | |
| ! | ATTTTGGATCAGGGATTCCG+TGG | - | chr8_1:69960284-69960303 | Msa1210750:CDS | 45.0% |
| GTTGGAAAAGGTGATTGGAG+AGG | - | chr8_1:69960349-69960368 | Msa1210750:intron | 45.0% | |
| GAAAACAAGAACACCTACGC+AGG | - | chr8_1:69960490-69960509 | Msa1210750:intron | 45.0% | |
| GACGGCGATTGAGATTACTT+CGG | + | chr8_1:69960547-69960566 | None:intergenic | 45.0% | |
| GGTGGTGATATCAAAGAGAC+TGG | + | chr8_1:69960579-69960598 | None:intergenic | 45.0% | |
| CTTTGATATCACCACCGACA+CGG | - | chr8_1:69960583-69960602 | Msa1210750:intron | 45.0% | |
| TGCCAGAAAAGTTACCGTGT+CGG | + | chr8_1:69960600-69960619 | None:intergenic | 45.0% | |
| GGTATCTGCAATTCCAATGG+AGG | - | chr8_1:69961146-69961165 | Msa1210750:CDS | 45.0% | |
| TTGACCTGTTCTTCCTCCAT+TGG | + | chr8_1:69961162-69961181 | None:intergenic | 45.0% | |
| CCAAGAGTGAGTTCTTCCAT+TGG | + | chr8_1:69961288-69961307 | None:intergenic | 45.0% | |
| CCAATGGAAGAACTCACTCT+TGG | - | chr8_1:69961285-69961304 | Msa1210750:intron | 45.0% | |
| GAAGAACTCACTCTTGGACA+AGG | - | chr8_1:69961291-69961310 | Msa1210750:intron | 45.0% | |
| TTTCCTTCTCGTCCGATCAA+AGG | - | chr8_1:69961454-69961473 | Msa1210750:CDS | 45.0% | |
| AACAAAGACGTTATCACCGC+CGG | - | chr8_1:69960108-69960127 | Msa1210750:CDS | 45.0% | |
| ! | ATTTTGGATCAGGGATTCCG+TGG | - | chr8_1:69960284-69960303 | Msa1210750:CDS | 45.0% |
| GTTGGAAAAGGTGATTGGAG+AGG | - | chr8_1:69960349-69960368 | Msa1210750:intron | 45.0% | |
| GAAAACAAGAACACCTACGC+AGG | - | chr8_1:69960490-69960509 | Msa1210750:intron | 45.0% | |
| GACGGCGATTGAGATTACTT+CGG | + | chr8_1:69960547-69960566 | None:intergenic | 45.0% | |
| GGTGGTGATATCAAAGAGAC+TGG | + | chr8_1:69960579-69960598 | None:intergenic | 45.0% | |
| CTTTGATATCACCACCGACA+CGG | - | chr8_1:69960583-69960602 | Msa1210750:intron | 45.0% | |
| TGCCAGAAAAGTTACCGTGT+CGG | + | chr8_1:69960600-69960619 | None:intergenic | 45.0% | |
| GGTATCTGCAATTCCAATGG+AGG | - | chr8_1:69961146-69961165 | Msa1210750:CDS | 45.0% | |
| TTGACCTGTTCTTCCTCCAT+TGG | + | chr8_1:69961162-69961181 | None:intergenic | 45.0% | |
| CCAAGAGTGAGTTCTTCCAT+TGG | + | chr8_1:69961288-69961307 | None:intergenic | 45.0% | |
| CCAATGGAAGAACTCACTCT+TGG | - | chr8_1:69961285-69961304 | Msa1210750:intron | 45.0% | |
| GAAGAACTCACTCTTGGACA+AGG | - | chr8_1:69961291-69961310 | Msa1210750:intron | 45.0% | |
| TTTCCTTCTCGTCCGATCAA+AGG | - | chr8_1:69961454-69961473 | Msa1210750:CDS | 45.0% | |
| TCCGGCGAATTCATGCTCTT+CGG | - | chr8_1:69959976-69959995 | Msa1210750:CDS | 50.0% | |
| ! | TCCGAAGAGCATGAATTCGC+CGG | + | chr8_1:69959980-69959999 | None:intergenic | 50.0% |
| !!! | GTTTTGAGGAACGGCGTCAT+CGG | + | chr8_1:69960145-69960164 | None:intergenic | 50.0% |
| !!! | TCTGGCGGAGTTTTGAGGAA+CGG | + | chr8_1:69960154-69960173 | None:intergenic | 50.0% |
| TGGAACCTCGTTTACGTTCG+CGG | + | chr8_1:69960185-69960204 | None:intergenic | 50.0% | |
| ! | GGAAGAGCACAAGCTGTTCT+TGG | - | chr8_1:69960312-69960331 | Msa1210750:CDS | 50.0% |
| GAGCACAAGCTGTTCTTGGT+TGG | - | chr8_1:69960316-69960335 | Msa1210750:CDS | 50.0% | |
| GGCGATTGAGATTACTTCGG+CGG | + | chr8_1:69960544-69960563 | None:intergenic | 50.0% | |
| CAGAAAAGTTACCGTGTCGG+TGG | + | chr8_1:69960597-69960616 | None:intergenic | 50.0% | |
| ! | CACCGACACGGTAACTTTTC+TGG | - | chr8_1:69960595-69960614 | Msa1210750:intron | 50.0% |
| TGGAGGGTCAATGGATGAAC+TGG | + | chr8_1:69961418-69961437 | None:intergenic | 50.0% | |
| !! | GGAAAGTGTTGGAGGGTCAA+TGG | + | chr8_1:69961427-69961446 | None:intergenic | 50.0% |
| ! | GAAAGTCCGAGGGAAAGTGT+TGG | + | chr8_1:69961438-69961457 | None:intergenic | 50.0% |
| CTTCCTTTGATCGGACGAGA+AGG | + | chr8_1:69961460-69961479 | None:intergenic | 50.0% | |
| TCCGGCGAATTCATGCTCTT+CGG | - | chr8_1:69959976-69959995 | Msa1210750:CDS | 50.0% | |
| ! | TCCGAAGAGCATGAATTCGC+CGG | + | chr8_1:69959980-69959999 | None:intergenic | 50.0% |
| !!! | GTTTTGAGGAACGGCGTCAT+CGG | + | chr8_1:69960145-69960164 | None:intergenic | 50.0% |
| !!! | TCTGGCGGAGTTTTGAGGAA+CGG | + | chr8_1:69960154-69960173 | None:intergenic | 50.0% |
| TGGAACCTCGTTTACGTTCG+CGG | + | chr8_1:69960185-69960204 | None:intergenic | 50.0% | |
| ! | GGAAGAGCACAAGCTGTTCT+TGG | - | chr8_1:69960312-69960331 | Msa1210750:CDS | 50.0% |
| GAGCACAAGCTGTTCTTGGT+TGG | - | chr8_1:69960316-69960335 | Msa1210750:CDS | 50.0% | |
| GGCGATTGAGATTACTTCGG+CGG | + | chr8_1:69960544-69960563 | None:intergenic | 50.0% | |
| CAGAAAAGTTACCGTGTCGG+TGG | + | chr8_1:69960597-69960616 | None:intergenic | 50.0% | |
| ! | CACCGACACGGTAACTTTTC+TGG | - | chr8_1:69960595-69960614 | Msa1210750:intron | 50.0% |
| TGGAGGGTCAATGGATGAAC+TGG | + | chr8_1:69961418-69961437 | None:intergenic | 50.0% | |
| !! | GGAAAGTGTTGGAGGGTCAA+TGG | + | chr8_1:69961427-69961446 | None:intergenic | 50.0% |
| ! | GAAAGTCCGAGGGAAAGTGT+TGG | + | chr8_1:69961438-69961457 | None:intergenic | 50.0% |
| CTTCCTTTGATCGGACGAGA+AGG | + | chr8_1:69961460-69961479 | None:intergenic | 50.0% | |
| GAGCATGAATTCGCCGGAGA+CGG | + | chr8_1:69959974-69959993 | None:intergenic | 55.0% | |
| !!! | CGGTTTCTGGCGGAGTTTTG+AGG | + | chr8_1:69960159-69960178 | None:intergenic | 55.0% |
| TGGATCAGGGATTCCGTGGA+CGG | - | chr8_1:69960288-69960307 | Msa1210750:CDS | 55.0% | |
| TTGTGCTCTTCCTCCGTCCA+CGG | + | chr8_1:69960304-69960323 | None:intergenic | 55.0% | |
| ! | GCATGACTTGCAACCTGCGT+AGG | + | chr8_1:69960506-69960525 | None:intergenic | 55.0% |
| AGAGACTGGATCTACGGCGA+CGG | + | chr8_1:69960565-69960584 | None:intergenic | 55.0% | |
| GACCCTCCAACACTTTCCCT+CGG | - | chr8_1:69961429-69961448 | Msa1210750:CDS | 55.0% | |
| !! | GTCCGAGGGAAAGTGTTGGA+GGG | + | chr8_1:69961434-69961453 | None:intergenic | 55.0% |
| !! | AGTCCGAGGGAAAGTGTTGG+AGG | + | chr8_1:69961435-69961454 | None:intergenic | 55.0% |
| GGACGAGAAGGAAAGTCCGA+GGG | + | chr8_1:69961448-69961467 | None:intergenic | 55.0% | |
| GAGCATGAATTCGCCGGAGA+CGG | + | chr8_1:69959974-69959993 | None:intergenic | 55.0% | |
| !!! | CGGTTTCTGGCGGAGTTTTG+AGG | + | chr8_1:69960159-69960178 | None:intergenic | 55.0% |
| TGGATCAGGGATTCCGTGGA+CGG | - | chr8_1:69960288-69960307 | Msa1210750:CDS | 55.0% | |
| TTGTGCTCTTCCTCCGTCCA+CGG | + | chr8_1:69960304-69960323 | None:intergenic | 55.0% | |
| ! | GCATGACTTGCAACCTGCGT+AGG | + | chr8_1:69960506-69960525 | None:intergenic | 55.0% |
| AGAGACTGGATCTACGGCGA+CGG | + | chr8_1:69960565-69960584 | None:intergenic | 55.0% | |
| GACCCTCCAACACTTTCCCT+CGG | - | chr8_1:69961429-69961448 | Msa1210750:CDS | 55.0% | |
| !! | GTCCGAGGGAAAGTGTTGGA+GGG | + | chr8_1:69961434-69961453 | None:intergenic | 55.0% |
| !! | AGTCCGAGGGAAAGTGTTGG+AGG | + | chr8_1:69961435-69961454 | None:intergenic | 55.0% |
| GGACGAGAAGGAAAGTCCGA+GGG | + | chr8_1:69961448-69961467 | None:intergenic | 55.0% | |
| CATGAATTCGCCGGAGACGG+TGG | + | chr8_1:69959971-69959990 | None:intergenic | 60.0% | |
| TTGAGGAACGGCGTCATCGG+CGG | + | chr8_1:69960142-69960161 | None:intergenic | 60.0% | |
| CTCGTTTACGTTCGCGGTCG+CGG | + | chr8_1:69960179-69960198 | None:intergenic | 60.0% | |
| ATCAGGGATTCCGTGGACGG+AGG | - | chr8_1:69960291-69960310 | Msa1210750:CDS | 60.0% | |
| !! | TTCTAGCTTCGGGGGCTGCA+GGG | + | chr8_1:69961209-69961228 | None:intergenic | 60.0% |
| !! | TTTCTAGCTTCGGGGGCTGC+AGG | + | chr8_1:69961210-69961229 | None:intergenic | 60.0% |
| CGGACGAGAAGGAAAGTCCG+AGG | + | chr8_1:69961449-69961468 | None:intergenic | 60.0% | |
| CATGAATTCGCCGGAGACGG+TGG | + | chr8_1:69959971-69959990 | None:intergenic | 60.0% | |
| TTGAGGAACGGCGTCATCGG+CGG | + | chr8_1:69960142-69960161 | None:intergenic | 60.0% | |
| CTCGTTTACGTTCGCGGTCG+CGG | + | chr8_1:69960179-69960198 | None:intergenic | 60.0% | |
| ATCAGGGATTCCGTGGACGG+AGG | - | chr8_1:69960291-69960310 | Msa1210750:CDS | 60.0% | |
| !! | TTCTAGCTTCGGGGGCTGCA+GGG | + | chr8_1:69961209-69961228 | None:intergenic | 60.0% |
| !! | TTTCTAGCTTCGGGGGCTGC+AGG | + | chr8_1:69961210-69961229 | None:intergenic | 60.0% |
| CGGACGAGAAGGAAAGTCCG+AGG | + | chr8_1:69961449-69961468 | None:intergenic | 60.0% | |
| ACCGCAGACTCCACCGTCTC+CGG | - | chr8_1:69959958-69959977 | Msa1210750:CDS | 65.0% | |
| ! | GTCATCGGCGGAGGCGTAAC+CGG | + | chr8_1:69960130-69960149 | None:intergenic | 65.0% |
| ! | TTCGCGGTCGCGGTTTCTGG+CGG | + | chr8_1:69960169-69960188 | None:intergenic | 65.0% |
| ACGTTCGCGGTCGCGGTTTC+TGG | + | chr8_1:69960172-69960191 | None:intergenic | 65.0% | |
| CGCGACCGCGAACGTAAACG+AGG | - | chr8_1:69960177-69960196 | Msa1210750:CDS | 65.0% | |
| ACCGCAGACTCCACCGTCTC+CGG | - | chr8_1:69959958-69959977 | Msa1210750:CDS | 65.0% | |
| ! | GTCATCGGCGGAGGCGTAAC+CGG | + | chr8_1:69960130-69960149 | None:intergenic | 65.0% |
| ! | TTCGCGGTCGCGGTTTCTGG+CGG | + | chr8_1:69960169-69960188 | None:intergenic | 65.0% |
| ACGTTCGCGGTCGCGGTTTC+TGG | + | chr8_1:69960172-69960191 | None:intergenic | 65.0% | |
| CGCGACCGCGAACGTAAACG+AGG | - | chr8_1:69960177-69960196 | Msa1210750:CDS | 65.0% | |
| GGAGACGGTGGAGTCTGCGG+TGG | + | chr8_1:69959959-69959978 | None:intergenic | 70.0% | |
| GCCGGAGACGGTGGAGTCTG+CGG | + | chr8_1:69959962-69959981 | None:intergenic | 70.0% | |
| ! | ATCGGCGGAGGCGTAACCGG+CGG | + | chr8_1:69960127-69960146 | None:intergenic | 70.0% |
| AGGAACGGCGTCATCGGCGG+AGG | + | chr8_1:69960139-69960158 | None:intergenic | 70.0% | |
| GGAGACGGTGGAGTCTGCGG+TGG | + | chr8_1:69959959-69959978 | None:intergenic | 70.0% | |
| GCCGGAGACGGTGGAGTCTG+CGG | + | chr8_1:69959962-69959981 | None:intergenic | 70.0% | |
| ! | ATCGGCGGAGGCGTAACCGG+CGG | + | chr8_1:69960127-69960146 | None:intergenic | 70.0% |
| AGGAACGGCGTCATCGGCGG+AGG | + | chr8_1:69960139-69960158 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 69959940 | 69961551 | 69959940 | ID=Msa1210750;Name=Msa1210750 |
| chr8_1 | mRNA | 69959940 | 69961551 | 69959940 | ID=Msa1210750-mRNA-1;Parent=Msa1210750;Name=Msa1210750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|269 |
| chr8_1 | exon | 69961293 | 69961551 | 69961293 | ID=Msa1210750-mRNA-1:exon:23385;Parent=Msa1210750-mRNA-1 |
| chr8_1 | exon | 69961143 | 69961195 | 69961143 | ID=Msa1210750-mRNA-1:exon:23384;Parent=Msa1210750-mRNA-1 |
| chr8_1 | exon | 69960887 | 69960979 | 69960887 | ID=Msa1210750-mRNA-1:exon:23383;Parent=Msa1210750-mRNA-1 |
| chr8_1 | exon | 69959940 | 69960344 | 69959940 | ID=Msa1210750-mRNA-1:exon:23382;Parent=Msa1210750-mRNA-1 |
| chr8_1 | CDS | 69961293 | 69961551 | 69961293 | ID=Msa1210750-mRNA-1:cds;Parent=Msa1210750-mRNA-1 |
| chr8_1 | CDS | 69961143 | 69961195 | 69961143 | ID=Msa1210750-mRNA-1:cds;Parent=Msa1210750-mRNA-1 |
| chr8_1 | CDS | 69960887 | 69960979 | 69960887 | ID=Msa1210750-mRNA-1:cds;Parent=Msa1210750-mRNA-1 |
| chr8_1 | CDS | 69959940 | 69960344 | 69959940 | ID=Msa1210750-mRNA-1:cds;Parent=Msa1210750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
