AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1237940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237940 MtrunA17_Chr8g0349051 100.000 82 0 0 1 82 1 82 4.30e-50 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237940 AT2G45860.1 65.432 81 25 1 1 81 1 78 6.39e-11 53.5

Find 32 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCAAATTCATACAAATT+AGG 0.156463 8_2:-17660026 None:intergenic
CTTAAAATGGTATCCCTTTC+CGG 0.185449 8_2:+17658126 None:intergenic
GGGTGGTGGAAGTGGATTTA+AGG 0.234381 8_2:-17658512 Msa1237940:CDS
TCCCAAATTCATACAAATTA+GGG 0.240413 8_2:-17660025 None:intergenic
CTAATCAGACGGCCAGAAAA+AGG 0.300444 8_2:+17658093 None:intergenic
AGGACTCGTTATCCTTAAAA+TGG 0.309268 8_2:+17658113 None:intergenic
GGAAAATTTGTTTAGGTTGA+TGG 0.363350 8_2:-17658553 Msa1237940:intron
TTCGTGTTGTCTCTTTCTCT+TGG 0.387601 8_2:+17659928 None:intergenic
GCAATGGAGCTCGACAAATA+AGG 0.389446 8_2:-17658430 Msa1237940:exon
GAGCTGACAACCTGGTCTTC+AGG 0.408279 8_2:+17658476 None:intergenic
ATGAAATTCACCACCGGAAA+GGG 0.415538 8_2:-17658139 Msa1237940:three_prime_UTR
AATGTAACGCACGTTTGGTT+TGG 0.424655 8_2:-17658049 Msa1237940:three_prime_UTR
TGTTAAGTTATTTGACTATG+AGG 0.436028 8_2:-17658307 Msa1237940:three_prime_UTR
AGCTAAAGCTGCGCAGGCAA+TGG 0.436809 8_2:-17658446 Msa1237940:CDS
AGTCCAATGTAACGCACGTT+TGG 0.449089 8_2:-17658054 Msa1237940:three_prime_UTR
ATCTATTAATTTCACTGCAT+CGG 0.452439 8_2:+17658371 None:intergenic
AAACCAAACGTGCGTTACAT+TGG 0.503848 8_2:+17658051 None:intergenic
GTCGAAAGCTAAAGCTGCGC+AGG 0.513870 8_2:-17658452 Msa1237940:CDS
TAATTTCACTGCATCGGCAT+CGG 0.526109 8_2:+17658377 None:intergenic
TGGTGGAAGTGGATTTAAGG+TGG 0.555596 8_2:-17658509 Msa1237940:CDS
CAATGTCTAAATAAATGTGT+TGG 0.566363 8_2:-17658019 Msa1237940:three_prime_UTR
TAATATATTGTCTAATCAGA+CGG 0.571590 8_2:+17658082 None:intergenic
GGTGGAAGTGGATTTAAGGT+GGG 0.573086 8_2:-17658508 Msa1237940:CDS
ACAAATAAGGCGGCATTGTG+AGG 0.576172 8_2:-17658417 Msa1237940:exon
GTTGTCTCTTTCTCTTGGCG+AGG 0.588958 8_2:+17659933 None:intergenic
TTTCGACAGAGCTGACAACC+TGG 0.591148 8_2:+17658468 None:intergenic
CACAGAATGAAATTCACCAC+CGG 0.607378 8_2:-17658145 Msa1237940:three_prime_UTR
AATGAAATTCACCACCGGAA+AGG 0.615913 8_2:-17658140 Msa1237940:three_prime_UTR
TAGATGACAGAGTTGTTCTG+AGG 0.617871 8_2:-17658353 Msa1237940:three_prime_UTR
GAAAGAAATACCTGAAGACC+AGG 0.620236 8_2:-17658486 Msa1237940:CDS
AAAATGGTATCCCTTTCCGG+TGG 0.682021 8_2:+17658129 None:intergenic
ATGGAGCTCGACAAATAAGG+CGG 0.701989 8_2:-17658427 Msa1237940:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGATAATATATGATTT+TGG - chr8_2:17658332-17658351 Msa1237940:three_prime_UTR 10.0%
!!! AAAAGATAATATATGATTTT+GGG - chr8_2:17658333-17658352 Msa1237940:three_prime_UTR 10.0%
!!! TTTTGTTTTTTAAATGATAT+TGG - chr8_2:17658518-17658537 Msa1237940:CDS 10.0%
!!! AAAAAGATAATATATGATTT+TGG - chr8_2:17658332-17658351 Msa1237940:three_prime_UTR 10.0%
!!! AAAAGATAATATATGATTTT+GGG - chr8_2:17658333-17658352 Msa1237940:three_prime_UTR 10.0%
!!! TTTTGTTTTTTAAATGATAT+TGG - chr8_2:17658518-17658537 Msa1237940:CDS 10.0%
!! ATGTGAAAAATTAGAAAATT+AGG + chr8_2:17658181-17658200 None:intergenic 15.0%
!!! ATTAACTCTAAAACAAATAT+AGG + chr8_2:17658557-17658576 None:intergenic 15.0%
!!! TTTTATATTATTGAGATTGT+GGG - chr8_2:17658604-17658623 Msa1237940:intron 15.0%
!! ATCTATGAAAATAAAAGTAA+TGG - chr8_2:17658815-17658834 Msa1237940:intron 15.0%
!!! AGATATAAATAAAAAGTACA+TGG + chr8_2:17659824-17659843 None:intergenic 15.0%
!! ATGTGAAAAATTAGAAAATT+AGG + chr8_2:17658181-17658200 None:intergenic 15.0%
!!! ATTAACTCTAAAACAAATAT+AGG + chr8_2:17658557-17658576 None:intergenic 15.0%
!!! TTTTATATTATTGAGATTGT+GGG - chr8_2:17658604-17658623 Msa1237940:intron 15.0%
!! ATCTATGAAAATAAAAGTAA+TGG - chr8_2:17658815-17658834 Msa1237940:intron 15.0%
!!! AGATATAAATAAAAAGTACA+TGG + chr8_2:17659824-17659843 None:intergenic 15.0%
!!! AGAAAATTAGGTTTGAAATT+GGG + chr8_2:17658169-17658188 None:intergenic 20.0%
!!! TAGAAAATTAGGTTTGAAAT+TGG + chr8_2:17658170-17658189 None:intergenic 20.0%
!! AATATAAAAGTTCACAACTT+TGG + chr8_2:17658593-17658612 None:intergenic 20.0%
!!! CTTTTATATTATTGAGATTG+TGG - chr8_2:17658603-17658622 Msa1237940:intron 20.0%
!! AAATACCAAAAAGTAGATTA+TGG + chr8_2:17658634-17658653 None:intergenic 20.0%
!! TATTTATAGAGTAGGTTTAA+AGG - chr8_2:17659082-17659101 Msa1237940:intron 20.0%
!! TGGATATTAGATTTAAACTT+TGG - chr8_2:17659356-17659375 Msa1237940:intron 20.0%
!! TATTAGATTTAAACTTTGGA+AGG - chr8_2:17659360-17659379 Msa1237940:intron 20.0%
!!! TTTTGTTGGAAAATTTGTTT+AGG - chr8_2:17659473-17659492 Msa1237940:intron 20.0%
!! TAATATATTGTCTAATCAGA+CGG + chr8_2:17659954-17659973 None:intergenic 20.0%
!!! AGAAAATTAGGTTTGAAATT+GGG + chr8_2:17658169-17658188 None:intergenic 20.0%
!!! TAGAAAATTAGGTTTGAAAT+TGG + chr8_2:17658170-17658189 None:intergenic 20.0%
!! AATATAAAAGTTCACAACTT+TGG + chr8_2:17658593-17658612 None:intergenic 20.0%
!!! CTTTTATATTATTGAGATTG+TGG - chr8_2:17658603-17658622 Msa1237940:intron 20.0%
!! AAATACCAAAAAGTAGATTA+TGG + chr8_2:17658634-17658653 None:intergenic 20.0%
!! TATTTATAGAGTAGGTTTAA+AGG - chr8_2:17659082-17659101 Msa1237940:intron 20.0%
!! TGGATATTAGATTTAAACTT+TGG - chr8_2:17659356-17659375 Msa1237940:intron 20.0%
!! TATTAGATTTAAACTTTGGA+AGG - chr8_2:17659360-17659379 Msa1237940:intron 20.0%
!!! TTTTGTTGGAAAATTTGTTT+AGG - chr8_2:17659473-17659492 Msa1237940:intron 20.0%
!! TAATATATTGTCTAATCAGA+CGG + chr8_2:17659954-17659973 None:intergenic 20.0%
!! AAAATTAGGTTTGAAATTGG+GGG + chr8_2:17658167-17658186 None:intergenic 25.0%
!! GAAAATTAGGTTTGAAATTG+GGG + chr8_2:17658168-17658187 None:intergenic 25.0%
!! TTTTTGCAATGATTTCTTTC+AGG - chr8_2:17658211-17658230 Msa1237940:three_prime_UTR 25.0%
!! TTGTGAACTTTTTGTTCAAT+GGG - chr8_2:17658401-17658420 Msa1237940:three_prime_UTR 25.0%
!! TTTTTGTTCAATGGGATAAT+GGG - chr8_2:17658409-17658428 Msa1237940:three_prime_UTR 25.0%
!!! GTTAGTTGATGAACATAAAT+TGG - chr8_2:17658489-17658508 Msa1237940:CDS 25.0%
! TTAAATGATATTGGTGAGTT+TGG - chr8_2:17658527-17658546 Msa1237940:CDS 25.0%
! TAAATGATATTGGTGAGTTT+GGG - chr8_2:17658528-17658547 Msa1237940:CDS 25.0%
!! CAAATTCAACACCTAATTTT+CGG + chr8_2:17658690-17658709 None:intergenic 25.0%
! ATCTATTAATTTCACTGCAT+CGG + chr8_2:17659665-17659684 None:intergenic 25.0%
! TGTTAAGTTATTTGACTATG+AGG - chr8_2:17659726-17659745 Msa1237940:intron 25.0%
!! ATTGATGAAATTTTACATGC+TGG - chr8_2:17659852-17659871 Msa1237940:intron 25.0%
! CAATGTCTAAATAAATGTGT+TGG - chr8_2:17660014-17660033 Msa1237940:five_prime_UTR 25.0%
!! AAAATTAGGTTTGAAATTGG+GGG + chr8_2:17658167-17658186 None:intergenic 25.0%
!! GAAAATTAGGTTTGAAATTG+GGG + chr8_2:17658168-17658187 None:intergenic 25.0%
!! TTTTTGCAATGATTTCTTTC+AGG - chr8_2:17658211-17658230 Msa1237940:three_prime_UTR 25.0%
!! TTGTGAACTTTTTGTTCAAT+GGG - chr8_2:17658401-17658420 Msa1237940:three_prime_UTR 25.0%
!! TTTTTGTTCAATGGGATAAT+GGG - chr8_2:17658409-17658428 Msa1237940:three_prime_UTR 25.0%
!!! GTTAGTTGATGAACATAAAT+TGG - chr8_2:17658489-17658508 Msa1237940:CDS 25.0%
! TTAAATGATATTGGTGAGTT+TGG - chr8_2:17658527-17658546 Msa1237940:CDS 25.0%
! TAAATGATATTGGTGAGTTT+GGG - chr8_2:17658528-17658547 Msa1237940:CDS 25.0%
!! CAAATTCAACACCTAATTTT+CGG + chr8_2:17658690-17658709 None:intergenic 25.0%
! ATCTATTAATTTCACTGCAT+CGG + chr8_2:17659665-17659684 None:intergenic 25.0%
! TGTTAAGTTATTTGACTATG+AGG - chr8_2:17659726-17659745 Msa1237940:intron 25.0%
!! ATTGATGAAATTTTACATGC+TGG - chr8_2:17659852-17659871 Msa1237940:intron 25.0%
GAACAAAAAGTTCACAACTT+TGG + chr8_2:17658398-17658417 None:intergenic 30.0%
! GTTGTGAACTTTTTGTTCAA+TGG - chr8_2:17658400-17658419 Msa1237940:three_prime_UTR 30.0%
! CTTTTTGTTCAATGGGATAA+TGG - chr8_2:17658408-17658427 Msa1237940:three_prime_UTR 30.0%
!! GTCAACCATAATCTACTTTT+TGG - chr8_2:17658626-17658645 Msa1237940:intron 30.0%
GTTTATAGTAGCCGAAAATT+AGG - chr8_2:17658676-17658695 Msa1237940:intron 30.0%
AGTGGAATGATAAGTATATG+TGG - chr8_2:17659020-17659039 Msa1237940:intron 30.0%
GTGGAATGATAAGTATATGT+GGG - chr8_2:17659021-17659040 Msa1237940:intron 30.0%
ACTCTATAAATACTAGCTCA+TGG + chr8_2:17659074-17659093 None:intergenic 30.0%
TGAGCTAGTATTTATAGAGT+AGG - chr8_2:17659074-17659093 Msa1237940:intron 30.0%
! TAGAGTAGGTTTAAAGGTTT+TGG - chr8_2:17659088-17659107 Msa1237940:intron 30.0%
!! GATTGAAAGTGTTCTGATAT+GGG + chr8_2:17659277-17659296 None:intergenic 30.0%
!! AGATTGAAAGTGTTCTGATA+TGG + chr8_2:17659278-17659297 None:intergenic 30.0%
AGAACACTTTCAATCTAAAG+TGG - chr8_2:17659282-17659301 Msa1237940:intron 30.0%
ACTAAAAGTAGAGATTAGAG+AGG - chr8_2:17659386-17659405 Msa1237940:intron 30.0%
!! GGAAAATTTGTTTAGGTTGA+TGG - chr8_2:17659480-17659499 Msa1237940:intron 30.0%
GAACAAAAAGTTCACAACTT+TGG + chr8_2:17658398-17658417 None:intergenic 30.0%
! GTTGTGAACTTTTTGTTCAA+TGG - chr8_2:17658400-17658419 Msa1237940:three_prime_UTR 30.0%
! CTTTTTGTTCAATGGGATAA+TGG - chr8_2:17658408-17658427 Msa1237940:three_prime_UTR 30.0%
!! GTCAACCATAATCTACTTTT+TGG - chr8_2:17658626-17658645 Msa1237940:intron 30.0%
GTTTATAGTAGCCGAAAATT+AGG - chr8_2:17658676-17658695 Msa1237940:intron 30.0%
AGTGGAATGATAAGTATATG+TGG - chr8_2:17659020-17659039 Msa1237940:intron 30.0%
GTGGAATGATAAGTATATGT+GGG - chr8_2:17659021-17659040 Msa1237940:intron 30.0%
ACTCTATAAATACTAGCTCA+TGG + chr8_2:17659074-17659093 None:intergenic 30.0%
TGAGCTAGTATTTATAGAGT+AGG - chr8_2:17659074-17659093 Msa1237940:intron 30.0%
! TAGAGTAGGTTTAAAGGTTT+TGG - chr8_2:17659088-17659107 Msa1237940:intron 30.0%
!! GATTGAAAGTGTTCTGATAT+GGG + chr8_2:17659277-17659296 None:intergenic 30.0%
!! AGATTGAAAGTGTTCTGATA+TGG + chr8_2:17659278-17659297 None:intergenic 30.0%
AGAACACTTTCAATCTAAAG+TGG - chr8_2:17659282-17659301 Msa1237940:intron 30.0%
ACTAAAAGTAGAGATTAGAG+AGG - chr8_2:17659386-17659405 Msa1237940:intron 30.0%
!! GGAAAATTTGTTTAGGTTGA+TGG - chr8_2:17659480-17659499 Msa1237940:intron 30.0%
TTCAGGAGAAAAACTTGAGA+AGG - chr8_2:17658228-17658247 Msa1237940:three_prime_UTR 35.0%
!!! TCATCTTGTTTTTCTTCGCT+TGG + chr8_2:17658273-17658292 None:intergenic 35.0%
!! CTAACTTTTCAGGGAGATTA+TGG + chr8_2:17658439-17658458 None:intergenic 35.0%
! CAAACACTGCTAACTTTTCA+GGG + chr8_2:17658448-17658467 None:intergenic 35.0%
! TCAAACACTGCTAACTTTTC+AGG + chr8_2:17658449-17658468 None:intergenic 35.0%
AATACTAGCTCATGGACATT+AGG + chr8_2:17659066-17659085 None:intergenic 35.0%
! ACACTTTCAATCTAAAGTGG+CGG - chr8_2:17659285-17659304 Msa1237940:intron 35.0%
CAATCACACGCATAATATGT+AGG + chr8_2:17659324-17659343 None:intergenic 35.0%
TGTGATTGTGCAATAAAAGC+TGG - chr8_2:17659336-17659355 Msa1237940:intron 35.0%
GTGTGTATCATGAGGATTAA+TGG - chr8_2:17659436-17659455 Msa1237940:intron 35.0%
CATGAGGATTAATGGTTGTA+TGG - chr8_2:17659444-17659463 Msa1237940:intron 35.0%
GGATTAATGGTTGTATGGTT+CGG - chr8_2:17659449-17659468 Msa1237940:intron 35.0%
!!! TTGTATGGTTCGGTTTTTGT+TGG - chr8_2:17659459-17659478 Msa1237940:intron 35.0%
! TGGTAGTGACAAGAAAAAGA+AGG - chr8_2:17659500-17659519 Msa1237940:intron 35.0%
GGTAGTGACAAGAAAAAGAA+GGG - chr8_2:17659501-17659520 Msa1237940:intron 35.0%
CTTAAAATGGTATCCCTTTC+CGG + chr8_2:17659910-17659929 None:intergenic 35.0%
AGGACTCGTTATCCTTAAAA+TGG + chr8_2:17659923-17659942 None:intergenic 35.0%
TTCAGGAGAAAAACTTGAGA+AGG - chr8_2:17658228-17658247 Msa1237940:three_prime_UTR 35.0%
!!! TCATCTTGTTTTTCTTCGCT+TGG + chr8_2:17658273-17658292 None:intergenic 35.0%
!! CTAACTTTTCAGGGAGATTA+TGG + chr8_2:17658439-17658458 None:intergenic 35.0%
! CAAACACTGCTAACTTTTCA+GGG + chr8_2:17658448-17658467 None:intergenic 35.0%
! TCAAACACTGCTAACTTTTC+AGG + chr8_2:17658449-17658468 None:intergenic 35.0%
AATACTAGCTCATGGACATT+AGG + chr8_2:17659066-17659085 None:intergenic 35.0%
! ACACTTTCAATCTAAAGTGG+CGG - chr8_2:17659285-17659304 Msa1237940:intron 35.0%
CAATCACACGCATAATATGT+AGG + chr8_2:17659324-17659343 None:intergenic 35.0%
TGTGATTGTGCAATAAAAGC+TGG - chr8_2:17659336-17659355 Msa1237940:intron 35.0%
GTGTGTATCATGAGGATTAA+TGG - chr8_2:17659436-17659455 Msa1237940:intron 35.0%
CATGAGGATTAATGGTTGTA+TGG - chr8_2:17659444-17659463 Msa1237940:intron 35.0%
GGATTAATGGTTGTATGGTT+CGG - chr8_2:17659449-17659468 Msa1237940:intron 35.0%
!!! TTGTATGGTTCGGTTTTTGT+TGG - chr8_2:17659459-17659478 Msa1237940:intron 35.0%
! TGGTAGTGACAAGAAAAAGA+AGG - chr8_2:17659500-17659519 Msa1237940:intron 35.0%
GGTAGTGACAAGAAAAAGAA+GGG - chr8_2:17659501-17659520 Msa1237940:intron 35.0%
CTTAAAATGGTATCCCTTTC+CGG + chr8_2:17659910-17659929 None:intergenic 35.0%
AGGACTCGTTATCCTTAAAA+TGG + chr8_2:17659923-17659942 None:intergenic 35.0%
TTCGTGTTGTCTCTTTCTCT+TGG + chr8_2:17658108-17658127 None:intergenic 40.0%
! GTTGTCCAAGTAAAGGTACA+GGG + chr8_2:17659115-17659134 None:intergenic 40.0%
! AGTTGTCCAAGTAAAGGTAC+AGG + chr8_2:17659116-17659135 None:intergenic 40.0%
ACTCACAGTTGTCCAAGTAA+AGG + chr8_2:17659122-17659141 None:intergenic 40.0%
TAAACAGATAACCTGGTCTG+TGG + chr8_2:17659170-17659189 None:intergenic 40.0%
GAGTGTTTGTGTGTATCATG+AGG - chr8_2:17659428-17659447 Msa1237940:intron 40.0%
AGTGACAAGAAAAAGAAGGG+TGG - chr8_2:17659504-17659523 Msa1237940:intron 40.0%
GAAAGAAATACCTGAAGACC+AGG - chr8_2:17659547-17659566 Msa1237940:intron 40.0%
! TAATTTCACTGCATCGGCAT+CGG + chr8_2:17659659-17659678 None:intergenic 40.0%
TAGATGACAGAGTTGTTCTG+AGG - chr8_2:17659680-17659699 Msa1237940:intron 40.0%
CACAGAATGAAATTCACCAC+CGG - chr8_2:17659888-17659907 Msa1237940:intron 40.0%
AATGAAATTCACCACCGGAA+AGG - chr8_2:17659893-17659912 Msa1237940:intron 40.0%
ATGAAATTCACCACCGGAAA+GGG - chr8_2:17659894-17659913 Msa1237940:intron 40.0%
! CGGAAAGGGATACCATTTTA+AGG - chr8_2:17659908-17659927 Msa1237940:intron 40.0%
! AGGATAACGAGTCCTTTTTC+TGG - chr8_2:17659928-17659947 Msa1237940:CDS 40.0%
AAACCAAACGTGCGTTACAT+TGG + chr8_2:17659985-17660004 None:intergenic 40.0%
AATGTAACGCACGTTTGGTT+TGG - chr8_2:17659984-17660003 Msa1237940:five_prime_UTR 40.0%
TTCGTGTTGTCTCTTTCTCT+TGG + chr8_2:17658108-17658127 None:intergenic 40.0%
! GTTGTCCAAGTAAAGGTACA+GGG + chr8_2:17659115-17659134 None:intergenic 40.0%
! AGTTGTCCAAGTAAAGGTAC+AGG + chr8_2:17659116-17659135 None:intergenic 40.0%
ACTCACAGTTGTCCAAGTAA+AGG + chr8_2:17659122-17659141 None:intergenic 40.0%
TAAACAGATAACCTGGTCTG+TGG + chr8_2:17659170-17659189 None:intergenic 40.0%
GAGTGTTTGTGTGTATCATG+AGG - chr8_2:17659428-17659447 Msa1237940:intron 40.0%
AGTGACAAGAAAAAGAAGGG+TGG - chr8_2:17659504-17659523 Msa1237940:intron 40.0%
GAAAGAAATACCTGAAGACC+AGG - chr8_2:17659547-17659566 Msa1237940:intron 40.0%
! TAATTTCACTGCATCGGCAT+CGG + chr8_2:17659659-17659678 None:intergenic 40.0%
TAGATGACAGAGTTGTTCTG+AGG - chr8_2:17659680-17659699 Msa1237940:intron 40.0%
CACAGAATGAAATTCACCAC+CGG - chr8_2:17659888-17659907 Msa1237940:intron 40.0%
AATGAAATTCACCACCGGAA+AGG - chr8_2:17659893-17659912 Msa1237940:intron 40.0%
ATGAAATTCACCACCGGAAA+GGG - chr8_2:17659894-17659913 Msa1237940:intron 40.0%
! CGGAAAGGGATACCATTTTA+AGG - chr8_2:17659908-17659927 Msa1237940:intron 40.0%
! AGGATAACGAGTCCTTTTTC+TGG - chr8_2:17659928-17659947 Msa1237940:CDS 40.0%
AAACCAAACGTGCGTTACAT+TGG + chr8_2:17659985-17660004 None:intergenic 40.0%
AATGTAACGCACGTTTGGTT+TGG - chr8_2:17659984-17660003 Msa1237940:five_prime_UTR 40.0%
GAAATTGGGGGCAAAATCGA+AGG + chr8_2:17658155-17658174 None:intergenic 45.0%
!! TGGCAGGATTAGAAAGTGTC+TGG + chr8_2:17658870-17658889 None:intergenic 45.0%
CATTGAATGGCCTCTGAGTA+GGG - chr8_2:17658913-17658932 Msa1237940:intron 45.0%
CTTCTTCTTTGGGCGAATGA+GGG - chr8_2:17658955-17658974 Msa1237940:intron 45.0%
TTGGTCCCTGTACCTTTACT+TGG - chr8_2:17659107-17659126 Msa1237940:intron 45.0%
ACTAATCTCTCAAGGGACCA+GGG + chr8_2:17659146-17659165 None:intergenic 45.0%
CTGTGGCACTAATCTCTCAA+GGG + chr8_2:17659153-17659172 None:intergenic 45.0%
TCTGTGGCACTAATCTCTCA+AGG + chr8_2:17659154-17659173 None:intergenic 45.0%
CCAAGCGTAAACAGATAACC+TGG + chr8_2:17659177-17659196 None:intergenic 45.0%
CCAGGTTATCTGTTTACGCT+TGG - chr8_2:17659174-17659193 Msa1237940:intron 45.0%
TCCTCGCACAAGGAATCATT+GGG + chr8_2:17659221-17659240 None:intergenic 45.0%
GACCACAAGTATGTCCCAAA+GGG + chr8_2:17659245-17659264 None:intergenic 45.0%
TGACCACAAGTATGTCCCAA+AGG + chr8_2:17659246-17659265 None:intergenic 45.0%
! TTTGGGACATACTTGTGGTC+AGG - chr8_2:17659245-17659264 Msa1237940:intron 45.0%
CTAAAGTGGCGGTGATTCAT+AGG - chr8_2:17659296-17659315 Msa1237940:intron 45.0%
GACAAGAAAAAGAAGGGTGG+TGG - chr8_2:17659507-17659526 Msa1237940:intron 45.0%
!! AAAAAGAAGGGTGGTGGAAG+TGG - chr8_2:17659513-17659532 Msa1237940:intron 45.0%
! TGGTGGAAGTGGATTTAAGG+TGG - chr8_2:17659524-17659543 Msa1237940:intron 45.0%
! GGTGGAAGTGGATTTAAGGT+GGG - chr8_2:17659525-17659544 Msa1237940:intron 45.0%
GCAATGGAGCTCGACAAATA+AGG - chr8_2:17659603-17659622 Msa1237940:intron 45.0%
ATGGAGCTCGACAAATAAGG+CGG - chr8_2:17659606-17659625 Msa1237940:intron 45.0%
ACAAATAAGGCGGCATTGTG+AGG - chr8_2:17659616-17659635 Msa1237940:intron 45.0%
AAAATGGTATCCCTTTCCGG+TGG + chr8_2:17659907-17659926 None:intergenic 45.0%
CTAATCAGACGGCCAGAAAA+AGG + chr8_2:17659943-17659962 None:intergenic 45.0%
AGTCCAATGTAACGCACGTT+TGG - chr8_2:17659979-17659998 Msa1237940:five_prime_UTR 45.0%
GAAATTGGGGGCAAAATCGA+AGG + chr8_2:17658155-17658174 None:intergenic 45.0%
!! TGGCAGGATTAGAAAGTGTC+TGG + chr8_2:17658870-17658889 None:intergenic 45.0%
CATTGAATGGCCTCTGAGTA+GGG - chr8_2:17658913-17658932 Msa1237940:intron 45.0%
CTTCTTCTTTGGGCGAATGA+GGG - chr8_2:17658955-17658974 Msa1237940:intron 45.0%
TTGGTCCCTGTACCTTTACT+TGG - chr8_2:17659107-17659126 Msa1237940:intron 45.0%
ACTAATCTCTCAAGGGACCA+GGG + chr8_2:17659146-17659165 None:intergenic 45.0%
CTGTGGCACTAATCTCTCAA+GGG + chr8_2:17659153-17659172 None:intergenic 45.0%
TCTGTGGCACTAATCTCTCA+AGG + chr8_2:17659154-17659173 None:intergenic 45.0%
CCAAGCGTAAACAGATAACC+TGG + chr8_2:17659177-17659196 None:intergenic 45.0%
CCAGGTTATCTGTTTACGCT+TGG - chr8_2:17659174-17659193 Msa1237940:intron 45.0%
TCCTCGCACAAGGAATCATT+GGG + chr8_2:17659221-17659240 None:intergenic 45.0%
GACCACAAGTATGTCCCAAA+GGG + chr8_2:17659245-17659264 None:intergenic 45.0%
TGACCACAAGTATGTCCCAA+AGG + chr8_2:17659246-17659265 None:intergenic 45.0%
! TTTGGGACATACTTGTGGTC+AGG - chr8_2:17659245-17659264 Msa1237940:intron 45.0%
CTAAAGTGGCGGTGATTCAT+AGG - chr8_2:17659296-17659315 Msa1237940:intron 45.0%
GACAAGAAAAAGAAGGGTGG+TGG - chr8_2:17659507-17659526 Msa1237940:intron 45.0%
!! AAAAAGAAGGGTGGTGGAAG+TGG - chr8_2:17659513-17659532 Msa1237940:intron 45.0%
! TGGTGGAAGTGGATTTAAGG+TGG - chr8_2:17659524-17659543 Msa1237940:intron 45.0%
! GGTGGAAGTGGATTTAAGGT+GGG - chr8_2:17659525-17659544 Msa1237940:intron 45.0%
GCAATGGAGCTCGACAAATA+AGG - chr8_2:17659603-17659622 Msa1237940:intron 45.0%
ATGGAGCTCGACAAATAAGG+CGG - chr8_2:17659606-17659625 Msa1237940:intron 45.0%
ACAAATAAGGCGGCATTGTG+AGG - chr8_2:17659616-17659635 Msa1237940:intron 45.0%
AAAATGGTATCCCTTTCCGG+TGG + chr8_2:17659907-17659926 None:intergenic 45.0%
CTAATCAGACGGCCAGAAAA+AGG + chr8_2:17659943-17659962 None:intergenic 45.0%
AGTCCAATGTAACGCACGTT+TGG - chr8_2:17659979-17659998 Msa1237940:five_prime_UTR 45.0%
GTTGTCTCTTTCTCTTGGCG+AGG + chr8_2:17658103-17658122 None:intergenic 50.0%
CTGCCAGACTTGAGATCCTT+GGG - chr8_2:17658884-17658903 Msa1237940:intron 50.0%
ACACCCAAGGATCTCAAGTC+TGG + chr8_2:17658890-17658909 None:intergenic 50.0%
GACTTGAGATCCTTGGGTGT+TGG - chr8_2:17658890-17658909 Msa1237940:intron 50.0%
CCATTCAATGCCAACACCCA+AGG + chr8_2:17658903-17658922 None:intergenic 50.0%
!! CCTTGGGTGTTGGCATTGAA+TGG - chr8_2:17658900-17658919 Msa1237940:intron 50.0%
GCATTGAATGGCCTCTGAGT+AGG - chr8_2:17658912-17658931 Msa1237940:intron 50.0%
AAGAAGAAGGCTGCAGTCGA+CGG + chr8_2:17658944-17658963 None:intergenic 50.0%
TCGACTGCAGCCTTCTTCTT+TGG - chr8_2:17658944-17658963 Msa1237940:intron 50.0%
CGACTGCAGCCTTCTTCTTT+GGG - chr8_2:17658945-17658964 Msa1237940:intron 50.0%
CCTCATTCGCCCAAAGAAGA+AGG + chr8_2:17658957-17658976 None:intergenic 50.0%
CCTTCTTCTTTGGGCGAATG+AGG - chr8_2:17658954-17658973 Msa1237940:intron 50.0%
! GCGCTTGCTAACTAGACTGT+TGG + chr8_2:17659000-17659019 None:intergenic 50.0%
AGTCTAGTTAGCAAGCGCAG+TGG - chr8_2:17659002-17659021 Msa1237940:intron 50.0%
CACTAATCTCTCAAGGGACC+AGG + chr8_2:17659147-17659166 None:intergenic 50.0%
AGAGATTAGTGCCACAGACC+AGG - chr8_2:17659156-17659175 Msa1237940:intron 50.0%
TTTACGCTTGGCCTCATGTG+CGG - chr8_2:17659186-17659205 Msa1237940:intron 50.0%
CCTCGCACAAGGAATCATTG+GGG + chr8_2:17659220-17659239 None:intergenic 50.0%
CTCCTCGCACAAGGAATCAT+TGG + chr8_2:17659222-17659241 None:intergenic 50.0%
!! AGCCCTTTGGGACATACTTG+TGG - chr8_2:17659240-17659259 Msa1237940:intron 50.0%
!! GGGTGGTGGAAGTGGATTTA+AGG - chr8_2:17659521-17659540 Msa1237940:intron 50.0%
TTTCGACAGAGCTGACAACC+TGG + chr8_2:17659568-17659587 None:intergenic 50.0%
GTTGTCTCTTTCTCTTGGCG+AGG + chr8_2:17658103-17658122 None:intergenic 50.0%
CTGCCAGACTTGAGATCCTT+GGG - chr8_2:17658884-17658903 Msa1237940:intron 50.0%
ACACCCAAGGATCTCAAGTC+TGG + chr8_2:17658890-17658909 None:intergenic 50.0%
GACTTGAGATCCTTGGGTGT+TGG - chr8_2:17658890-17658909 Msa1237940:intron 50.0%
CCATTCAATGCCAACACCCA+AGG + chr8_2:17658903-17658922 None:intergenic 50.0%
!! CCTTGGGTGTTGGCATTGAA+TGG - chr8_2:17658900-17658919 Msa1237940:intron 50.0%
GCATTGAATGGCCTCTGAGT+AGG - chr8_2:17658912-17658931 Msa1237940:intron 50.0%
AAGAAGAAGGCTGCAGTCGA+CGG + chr8_2:17658944-17658963 None:intergenic 50.0%
TCGACTGCAGCCTTCTTCTT+TGG - chr8_2:17658944-17658963 Msa1237940:intron 50.0%
CGACTGCAGCCTTCTTCTTT+GGG - chr8_2:17658945-17658964 Msa1237940:intron 50.0%
CCTCATTCGCCCAAAGAAGA+AGG + chr8_2:17658957-17658976 None:intergenic 50.0%
CCTTCTTCTTTGGGCGAATG+AGG - chr8_2:17658954-17658973 Msa1237940:intron 50.0%
! GCGCTTGCTAACTAGACTGT+TGG + chr8_2:17659000-17659019 None:intergenic 50.0%
AGTCTAGTTAGCAAGCGCAG+TGG - chr8_2:17659002-17659021 Msa1237940:intron 50.0%
CACTAATCTCTCAAGGGACC+AGG + chr8_2:17659147-17659166 None:intergenic 50.0%
AGAGATTAGTGCCACAGACC+AGG - chr8_2:17659156-17659175 Msa1237940:intron 50.0%
TTTACGCTTGGCCTCATGTG+CGG - chr8_2:17659186-17659205 Msa1237940:intron 50.0%
CCTCGCACAAGGAATCATTG+GGG + chr8_2:17659220-17659239 None:intergenic 50.0%
CTCCTCGCACAAGGAATCAT+TGG + chr8_2:17659222-17659241 None:intergenic 50.0%
!! AGCCCTTTGGGACATACTTG+TGG - chr8_2:17659240-17659259 Msa1237940:intron 50.0%
!! GGGTGGTGGAAGTGGATTTA+AGG - chr8_2:17659521-17659540 Msa1237940:intron 50.0%
TTTCGACAGAGCTGACAACC+TGG + chr8_2:17659568-17659587 None:intergenic 50.0%
CCAAGGATCTCAAGTCTGGC+AGG + chr8_2:17658886-17658905 None:intergenic 55.0%
CCTGCCAGACTTGAGATCCT+TGG - chr8_2:17658883-17658902 Msa1237940:intron 55.0%
TTGGACAACTGTGAGTGCCC+TGG - chr8_2:17659126-17659145 Msa1237940:intron 55.0%
GGGTTGTGATACCGCACATG+AGG + chr8_2:17659200-17659219 None:intergenic 55.0%
CCCCAATGATTCCTTGTGCG+AGG - chr8_2:17659217-17659236 Msa1237940:intron 55.0%
! GAGCTGACAACCTGGTCTTC+AGG + chr8_2:17659560-17659579 None:intergenic 55.0%
GTCGAAAGCTAAAGCTGCGC+AGG - chr8_2:17659581-17659600 Msa1237940:intron 55.0%
AGCTAAAGCTGCGCAGGCAA+TGG - chr8_2:17659587-17659606 Msa1237940:intron 55.0%
CCAAGGATCTCAAGTCTGGC+AGG + chr8_2:17658886-17658905 None:intergenic 55.0%
CCTGCCAGACTTGAGATCCT+TGG - chr8_2:17658883-17658902 Msa1237940:intron 55.0%
TTGGACAACTGTGAGTGCCC+TGG - chr8_2:17659126-17659145 Msa1237940:intron 55.0%
GGGTTGTGATACCGCACATG+AGG + chr8_2:17659200-17659219 None:intergenic 55.0%
CCCCAATGATTCCTTGTGCG+AGG - chr8_2:17659217-17659236 Msa1237940:intron 55.0%
! GAGCTGACAACCTGGTCTTC+AGG + chr8_2:17659560-17659579 None:intergenic 55.0%
GTCGAAAGCTAAAGCTGCGC+AGG - chr8_2:17659581-17659600 Msa1237940:intron 55.0%
AGCTAAAGCTGCGCAGGCAA+TGG - chr8_2:17659587-17659606 Msa1237940:intron 55.0%
AAGAAGGCTGCAGTCGACGG+AGG + chr8_2:17658941-17658960 None:intergenic 60.0%
TCCTTGTGCGAGGAGCCCTT+TGG - chr8_2:17659227-17659246 Msa1237940:intron 60.0%
CCTTGTGCGAGGAGCCCTTT+GGG - chr8_2:17659228-17659247 Msa1237940:intron 60.0%
AAGAAGGCTGCAGTCGACGG+AGG + chr8_2:17658941-17658960 None:intergenic 60.0%
TCCTTGTGCGAGGAGCCCTT+TGG - chr8_2:17659227-17659246 Msa1237940:intron 60.0%
CCTTGTGCGAGGAGCCCTTT+GGG - chr8_2:17659228-17659247 Msa1237940:intron 60.0%
!! GACGGAGGTGCCCTACTCAG+AGG + chr8_2:17658926-17658945 None:intergenic 65.0%
CCCAAAGGGCTCCTCGCACA+AGG + chr8_2:17659231-17659250 None:intergenic 65.0%
!! GACGGAGGTGCCCTACTCAG+AGG + chr8_2:17658926-17658945 None:intergenic 65.0%
CCCAAAGGGCTCCTCGCACA+AGG + chr8_2:17659231-17659250 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 17658019 17660036 17658019 ID=Msa1237940;Name=Msa1237940
chr8_2 mRNA 17658019 17660036 17658019 ID=Msa1237940-mRNA-1;Parent=Msa1237940;Name=Msa1237940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=64|1|1|1|1|1|3|413|82
chr8_2 exon 17658019 17658560 17658019 ID=Msa1237940-mRNA-1:exon:6721;Parent=Msa1237940-mRNA-1
chr8_2 exon 17659761 17659822 17659761 ID=Msa1237940-mRNA-1:exon:6720;Parent=Msa1237940-mRNA-1
chr8_2 exon 17659915 17660036 17659915 ID=Msa1237940-mRNA-1:exon:6719;Parent=Msa1237940-mRNA-1
chr8_2 five_prime_UTR 17659973 17660036 17659973 ID=Msa1237940-mRNA-1:five_prime_utr;Parent=Msa1237940-mRNA-1
chr8_2 CDS 17659915 17659972 17659915 ID=Msa1237940-mRNA-1:cds;Parent=Msa1237940-mRNA-1
chr8_2 CDS 17659761 17659822 17659761 ID=Msa1237940-mRNA-1:cds;Parent=Msa1237940-mRNA-1
chr8_2 CDS 17658432 17658560 17658432 ID=Msa1237940-mRNA-1:cds;Parent=Msa1237940-mRNA-1
chr8_2 three_prime_UTR 17658019 17658431 17658019 ID=Msa1237940-mRNA-1:three_prime_utr;Parent=Msa1237940-mRNA-1
Gene Sequence

>Msa1237940

ATGTCGAAGAAGAACGACCTCGCCAAGAGAAAGAGACAACACGAATTCGAACTGCGAAGAGAAAAACTTGAGAAGGAGAAGAAAGAAAAGAAGCTCCAAGCGAAGAAAAACAAGATGAAAGTTGATGGTAGTGACAAGAAAAAGAAGGGTGGTGGAAGTGGATTTAAGGTGGGAAAGAAATACCTGAAGACCAGGTTGTCAGCTCTGTCGAAAGCTAAAGCTGCGCAGGCAATGGAGCTCGACAAATAA

Protein sequence

>Msa1237940

MSKKNDLAKRKRQHEFELRREKLEKEKKEKKLQAKKNKMKVDGSDKKKKGGGSGFKVGKKYLKTRLSALSKAKAAQAMELDK*