AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0777570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777570 MtrunA17_Chr5g0432831 100.000 148 0 0 1 148 1 148 5.28e-110 308
Msa0777570 MtrunA17_Chr3g0108261 98.649 148 2 0 1 148 1 148 1.15e-108 305
Msa0777570 MtrunA17_Chr7g0275361 96.622 148 5 0 1 148 1 148 9.63e-107 300
Msa0777570 MtrunA17_Chr1g0154011 91.892 148 12 0 1 148 1 148 4.66e-103 291
Msa0777570 MtrunA17_Chr8g0369311 92.568 148 11 0 1 148 57 204 2.20e-102 291
Msa0777570 MtrunA17_Chr4g0037011 91.216 148 13 0 1 148 1 148 2.21e-102 289
Msa0777570 MtrunA17_Chr8g0378601 51.724 145 70 0 2 146 23 167 1.31e-55 172
Msa0777570 MtrunA17_Chr2g0316201 49.655 145 73 0 4 148 8 152 2.64e-48 152
Msa0777570 MtrunA17_Chr2g0316211 49.306 144 73 0 5 148 9 152 2.83e-47 150
Msa0777570 MtrunA17_Chr4g0060351 45.890 146 74 1 2 142 5 150 2.60e-45 145
Msa0777570 MtrunA17_Chr8g0362321 45.205 146 75 1 2 142 5 150 4.03e-45 144
Msa0777570 MtrunA17_Chr3g0131871 48.611 144 72 2 5 146 6 149 3.06e-42 139
Msa0777570 MtrunA17_Chr3g0139901 40.136 147 84 3 5 147 7 153 2.93e-34 117
Msa0777570 MtrunA17_Chr4g0038891 44.355 124 69 0 4 127 35 158 6.72e-34 117
Msa0777570 MtrunA17_Chr1g0199951 45.669 127 68 1 3 128 43 169 5.05e-33 115
Msa0777570 MtrunA17_Chr5g0396451 41.406 128 75 0 4 131 35 162 3.83e-32 112
Msa0777570 MtrunA17_Chr4g0053191 36.184 152 90 2 1 145 4 155 8.45e-30 105
Msa0777570 MtrunA17_Chr4g0031181 35.821 134 72 2 15 134 18 151 2.83e-27 99.8
Msa0777570 MtrunA17_Chr5g0401831 33.553 152 94 2 1 145 4 155 3.59e-27 99.4
Msa0777570 MtrunA17_Chr8g0348701 37.398 123 75 2 26 146 25 147 6.75e-27 99.4
Msa0777570 MtrunA17_Chr5g0403591 36.765 136 83 2 5 139 33 166 2.01e-26 98.2
Msa0777570 MtrunA17_Chr8g0387131 35.766 137 86 2 12 146 11 147 9.45e-26 96.3
Msa0777570 MtrunA17_Chr7g0254701 34.965 143 93 0 4 146 13 155 2.55e-25 97.4
Msa0777570 MtrunA17_Chr2g0328001 34.028 144 81 2 15 144 18 161 8.90e-25 93.6
Msa0777570 MtrunA17_Chr4g0059291 30.894 123 83 2 26 146 25 147 2.43e-22 87.8
Msa0777570 MtrunA17_Chr8g0372391 37.864 103 62 2 1 102 15 116 1.57e-18 77.0
Msa0777570 MtrunA17_Chr4g0068301 34.454 119 68 4 2 114 11 125 2.07e-18 79.7
Msa0777570 MtrunA17_Chr8g0376111 31.373 153 87 5 4 144 43 189 4.02e-18 79.0
Msa0777570 MtrunA17_Chr5g0404931 36.893 103 63 2 1 102 15 116 5.96e-18 75.5
Msa0777570 MtrunA17_Chr7g0233631 36.885 122 67 3 4 115 38 159 3.05e-17 76.6
Msa0777570 MtrunA17_Chr7g0233611 36.885 122 67 3 4 115 38 159 7.11e-17 75.5
Msa0777570 MtrunA17_Chr8g0345331 32.479 117 70 3 4 115 8 120 5.55e-16 72.0
Msa0777570 MtrunA17_Chr4g0047301 31.333 150 90 4 4 143 672 818 3.33e-15 71.6
Msa0777570 MtrunA17_Chr7g0222941 30.894 123 75 3 3 115 90 212 8.02e-15 68.9
Msa0777570 MtrunA17_Chr2g0282211 28.947 152 95 4 3 144 681 829 2.90e-14 68.9
Msa0777570 MtrunA17_Chr4g0045101 32.787 122 72 3 4 115 37 158 3.84e-14 67.8
Msa0777570 MtrunA17_Chr1g0186291 30.303 99 55 2 43 140 30 115 2.04e-13 63.2
Msa0777570 MtrunA17_Chr2g0317631 30.081 123 76 3 3 115 306 428 1.35e-12 63.9
Msa0777570 MtrunA17_Chr8g0376201 30.496 141 87 4 3 133 192 331 2.24e-12 63.2
Msa0777570 MtrunA17_Chr1g0198021 28.455 123 78 3 3 115 137 259 3.41e-12 62.8
Msa0777570 MtrunA17_Chr1g0211131 29.508 122 76 3 4 115 823 944 5.26e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777570 AT5G41700.5 97.297 148 4 0 1 148 1 148 5.33e-108 304
Msa0777570 AT5G41700.2 97.297 148 4 0 1 148 1 148 5.33e-108 304
Msa0777570 AT5G41700.1 97.297 148 4 0 1 148 1 148 5.33e-108 304
Msa0777570 AT1G64230.2 96.622 148 5 0 1 148 1 148 6.02e-108 303
Msa0777570 AT1G64230.1 96.622 148 5 0 1 148 1 148 6.02e-108 303
Msa0777570 AT4G27960.1 95.270 148 7 0 1 148 1 148 2.68e-106 299
Msa0777570 AT5G53300.2 95.270 148 7 0 1 148 1 148 5.98e-106 298
Msa0777570 AT5G53300.4 95.270 148 7 0 1 148 1 148 5.98e-106 298
Msa0777570 AT5G53300.1 95.270 148 7 0 1 148 1 148 5.98e-106 298
Msa0777570 AT4G27960.2 95.270 148 7 0 1 148 31 178 8.91e-106 299
Msa0777570 AT5G41700.4 95.973 149 5 1 1 148 1 149 3.47e-105 296
Msa0777570 AT3G08690.2 93.243 148 10 0 1 148 1 148 2.82e-104 294
Msa0777570 AT3G08690.1 93.243 148 10 0 1 148 1 148 2.82e-104 294
Msa0777570 AT1G64230.3 90.446 157 6 1 1 148 1 157 2.29e-103 292
Msa0777570 AT5G56150.1 88.514 148 17 0 1 148 1 148 5.54e-100 283
Msa0777570 AT1G64230.5 74.737 190 6 1 1 148 1 190 6.21e-99 282
Msa0777570 AT1G64230.4 74.737 190 6 1 1 148 1 190 6.21e-99 282
Msa0777570 AT2G16740.1 87.075 147 19 0 1 147 1 147 3.55e-98 279
Msa0777570 AT3G08700.2 79.195 149 30 1 1 148 1 149 3.19e-87 251
Msa0777570 AT3G08700.1 79.195 149 30 1 1 148 1 149 3.19e-87 251
Msa0777570 AT5G41700.3 96.154 104 4 0 1 104 1 104 1.21e-72 214
Msa0777570 AT5G53300.3 92.661 109 6 1 1 107 1 109 4.14e-71 209
Msa0777570 AT5G56150.2 86.408 103 14 0 1 103 1 103 1.58e-65 195
Msa0777570 AT3G13550.1 48.276 145 75 0 2 146 37 181 2.36e-53 167
Msa0777570 AT1G16890.2 50.345 145 72 0 4 148 8 152 7.49e-49 154
Msa0777570 AT1G78870.2 49.655 145 73 0 4 148 8 152 6.88e-48 152
Msa0777570 AT1G16890.3 48.052 154 71 1 4 148 8 161 3.51e-46 148
Msa0777570 AT5G62540.1 49.254 134 68 0 2 135 5 138 6.65e-46 147
Msa0777570 AT1G14400.1 46.575 146 73 1 2 142 5 150 1.42e-45 146
Msa0777570 AT1G14400.2 46.575 146 73 1 2 142 5 150 1.42e-45 146
Msa0777570 AT2G02760.1 45.890 146 74 1 2 142 5 150 3.12e-45 145
Msa0777570 AT2G02760.2 45.890 146 74 1 2 142 5 150 3.12e-45 145
Msa0777570 AT2G02760.4 45.890 146 74 1 2 142 5 150 3.12e-45 145
Msa0777570 AT2G02760.3 45.890 146 74 1 2 142 5 150 3.12e-45 145
Msa0777570 AT1G36340.2 48.966 145 73 1 2 146 9 152 3.95e-45 145
Msa0777570 AT1G36340.1 48.966 145 73 1 2 146 9 152 3.95e-45 145
Msa0777570 AT3G13550.2 50.000 114 57 0 2 115 37 150 3.12e-42 138
Msa0777570 AT1G16890.1 52.941 119 56 0 30 148 1 119 1.04e-41 135
Msa0777570 AT1G78870.4 52.941 119 56 0 30 148 1 119 1.82e-41 134
Msa0777570 AT1G78870.1 52.500 120 56 1 30 148 1 120 1.08e-39 130
Msa0777570 AT5G50870.1 45.833 144 76 2 5 146 6 149 1.99e-39 132
Msa0777570 AT2G32790.1 49.342 152 68 4 2 148 30 177 2.39e-36 123
Msa0777570 AT5G50870.2 42.581 155 76 3 5 146 6 160 5.10e-36 123
Msa0777570 AT3G24515.1 43.949 157 75 3 3 146 8 164 1.03e-34 125
Msa0777570 AT5G25760.1 38.776 147 86 3 5 147 7 153 1.24e-32 113
Msa0777570 AT5G25760.2 38.776 147 86 3 5 147 7 153 1.24e-32 113
Msa0777570 AT1G78870.3 48.571 105 54 0 4 108 8 112 2.19e-32 111
Msa0777570 AT3G24515.3 45.902 122 62 1 29 146 68 189 4.44e-32 118
Msa0777570 AT3G20060.1 42.742 124 71 0 4 127 39 162 8.43e-31 109
Msa0777570 AT1G50490.1 43.548 124 70 0 4 127 38 161 2.37e-30 108
Msa0777570 AT3G20060.2 43.636 110 62 0 22 131 12 121 3.08e-29 104
Msa0777570 AT2G46030.5 37.162 148 90 3 1 146 1 147 5.94e-29 105
Msa0777570 AT2G46030.1 37.162 148 90 3 1 146 1 147 5.94e-29 105
Msa0777570 AT2G46030.3 37.162 148 90 3 1 146 73 219 1.49e-28 105
Msa0777570 AT2G46030.4 39.837 123 72 2 26 146 28 150 2.22e-28 103
Msa0777570 AT2G46030.2 39.837 123 72 2 26 146 28 150 2.22e-28 103
Msa0777570 AT3G57870.1 34.868 152 92 2 1 145 5 156 4.76e-28 102
Msa0777570 AT5G05080.2 37.063 143 90 0 4 146 13 155 1.10e-27 103
Msa0777570 AT5G05080.3 37.063 143 90 0 4 146 13 155 1.10e-27 103
Msa0777570 AT5G05080.1 37.063 143 90 0 4 146 13 155 1.10e-27 103
Msa0777570 AT5G05080.4 37.063 143 90 0 4 146 13 155 1.10e-27 103
Msa0777570 AT3G55380.1 37.313 134 70 2 15 134 19 152 1.98e-27 100
Msa0777570 AT5G41340.1 38.211 123 74 2 26 146 25 147 8.98e-27 99.4
Msa0777570 AT1G63800.2 38.211 123 74 2 26 146 10 132 1.11e-26 98.6
Msa0777570 AT1G63800.1 38.211 123 74 2 26 146 25 147 1.22e-26 99.0
Msa0777570 AT5G59300.1 34.722 144 80 2 15 144 18 161 3.02e-25 95.1
Msa0777570 AT4G36800.2 35.036 137 84 3 5 139 34 167 4.38e-25 95.1
Msa0777570 AT4G36800.1 35.036 137 84 3 5 139 34 167 4.38e-25 95.1
Msa0777570 AT3G46460.1 34.028 144 81 2 15 144 18 161 5.36e-25 94.4
Msa0777570 AT5G41340.2 40.385 104 60 2 45 146 9 112 1.24e-23 90.5
Msa0777570 AT2G18600.1 35.036 137 84 3 5 139 35 168 2.46e-23 90.5
Msa0777570 AT2G18600.2 35.036 137 84 3 5 139 35 168 2.46e-23 90.5
Msa0777570 AT3G17000.1 36.975 119 65 4 2 114 12 126 2.10e-20 85.5
Msa0777570 AT3G55380.2 29.586 169 71 3 15 135 19 187 3.27e-20 82.8
Msa0777570 AT1G75440.1 37.963 108 61 3 1 107 15 117 3.94e-18 76.6
Msa0777570 AT1G45050.1 36.893 103 63 2 1 102 15 116 1.22e-17 75.1
Msa0777570 AT5G42990.1 37.864 103 62 2 1 102 15 116 1.97e-17 74.7
Msa0777570 AT3G46460.3 30.631 111 64 1 47 144 9 119 1.49e-16 71.2
Msa0777570 AT3G46460.2 30.631 111 64 1 47 144 9 119 1.49e-16 71.2
Msa0777570 AT1G17280.9 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0777570 AT1G17280.7 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0777570 AT1G17280.6 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0777570 AT1G17280.2 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0777570 AT1G17280.5 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0777570 AT1G17280.3 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0777570 AT1G17280.1 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0777570 AT1G17280.8 33.333 117 69 3 4 115 8 120 1.70e-16 73.9
Msa0777570 AT4G36410.1 34.259 108 65 3 1 107 15 117 1.72e-16 72.0
Msa0777570 AT5G50430.1 33.333 117 69 3 4 115 8 120 1.95e-16 73.6
Msa0777570 AT5G50430.2 33.333 117 69 3 4 115 8 120 1.95e-16 73.6
Msa0777570 AT1G17280.4 30.894 123 70 3 4 115 8 126 3.99e-15 70.1
Msa0777570 AT3G15355.1 28.947 152 95 4 3 144 334 482 3.26e-12 63.2
Msa0777570 AT1G53025.2 30.328 122 75 3 4 115 274 395 2.83e-11 60.5
Msa0777570 AT1G53025.1 30.328 122 75 3 4 115 274 395 3.16e-11 60.5
Msa0777570 AT1G45050.2 33.708 89 57 2 1 88 15 102 5.36e-11 56.6
Msa0777570 AT1G53023.1 31.148 122 74 3 4 115 60 181 7.11e-11 59.3

Find 87 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGAAATATCTTATTATT+TGG 0.151262 5_2:-56644964 Msa0777570:three_prime_UTR
CAATATTCACAATTGATAAA+TGG 0.173693 5_2:+56645062 None:intergenic
GCGAGCTGTGGCTTCATATT+TGG 0.212979 5_2:+56645245 None:intergenic
TTGTACATGTGTGCAATTTC+AGG 0.243362 5_2:+56645279 None:intergenic
TATTTAAGTTTGAGTGATTA+TGG 0.283035 5_2:-56649925 Msa0777570:intron
ATATACTGGTGGTGTGTTCC+TGG 0.285935 5_2:-56648085 Msa0777570:CDS
CTGCCATTACTGTTGATGTT+TGG 0.288456 5_2:+56645678 None:intergenic
AGGAACACACCACCAGTATA+TGG 0.290101 5_2:+56648087 None:intergenic
TGCCATTACTGTTGATGTTT+GGG 0.308240 5_2:+56645679 None:intergenic
ATGCCATCTTTATTGTTTAG+TGG 0.346543 5_2:-56645110 Msa0777570:three_prime_UTR
ACAAGTGGATCATCGGGGTT+GGG 0.347133 5_2:+56645303 None:intergenic
GTCAATTTGCTCGTTGTTGA+CGG 0.355439 5_2:-56645328 Msa0777570:CDS
AACCTGCACTGCATGAAGTT+GGG 0.370343 5_2:+56649856 None:intergenic
TGGAAGAAGAATGAATGATT+TGG 0.378241 5_2:+56650089 None:intergenic
ATTCTTGAAAATCAAAGAAA+TGG 0.380237 5_2:+56650199 None:intergenic
AATATTCACAATTGATAAAT+GGG 0.398355 5_2:+56645063 None:intergenic
TTGGATTGTGTTGTAGATCT+TGG 0.410601 5_2:-56644945 Msa0777570:three_prime_UTR
TCAGGAACAAGTGGATCATC+GGG 0.432078 5_2:+56645297 None:intergenic
GAATACCTTTGGTGGCTTGA+AGG 0.432336 5_2:+56648035 None:intergenic
GTAATATCAAACCTTGGAAA+TGG 0.433618 5_2:+56645611 None:intergenic
GGATGTGGATTAAGATGAAA+TGG 0.443229 5_2:+56644862 None:intergenic
ACCTTGGAAATGGTTAATGC+TGG 0.447093 5_2:+56645621 None:intergenic
ATGAAGCCACAGCTCGCAGC+TGG 0.457406 5_2:-56645239 Msa0777570:CDS
TTGTAAGACACTTGTTATTG+AGG 0.469139 5_2:-56645038 Msa0777570:three_prime_UTR
AGTGGAACTTGAAGCTGGTA+AGG 0.470147 5_2:-56645092 Msa0777570:three_prime_UTR
TTCTTCCACGCTTCCGACCC+AGG 0.471097 5_2:-56650074 Msa0777570:intron
CCGGCTGATAGCCCATATAC+TGG 0.473020 5_2:-56648099 Msa0777570:CDS
AATACCTTTGGTGGCTTGAA+GGG 0.473573 5_2:+56648036 None:intergenic
GGTGGCTTGAAGGGATAGTC+AGG 0.473711 5_2:+56648045 None:intergenic
AACAAGTGGATCATCGGGGT+TGG 0.475495 5_2:+56645302 None:intergenic
TTCAGGAACAAGTGGATCAT+CGG 0.479213 5_2:+56645296 None:intergenic
AAACCTGCACTGCATGAAGT+TGG 0.486829 5_2:+56649855 None:intergenic
CACTGGCAAGCCACAATCAT+GGG 0.492054 5_2:-56648123 Msa0777570:CDS
AGAATGAATGATTTGGAGAA+GGG 0.495620 5_2:+56650096 None:intergenic
GGCTTCATATTTGGCCCTGT+CGG 0.498542 5_2:+56645254 None:intergenic
CAAGTGGATCATCGGGGTTG+GGG 0.503531 5_2:+56645304 None:intergenic
TGTTTAGTGGAACTTGAAGC+TGG 0.513586 5_2:-56645097 Msa0777570:three_prime_UTR
GGAACACACCACCAGTATAT+GGG 0.514259 5_2:+56648088 None:intergenic
TATATCAGGTCCTGTGGCTG+AGG 0.520756 5_2:-56648154 Msa0777570:intron
ACCTGCACTGCATGAAGTTG+GGG 0.521550 5_2:+56649857 None:intergenic
GGCGTCGAAACGAATCTTGA+AGG 0.526427 5_2:-56649904 Msa0777570:CDS
CCACTGGCAAGCCACAATCA+TGG 0.528486 5_2:-56648124 Msa0777570:CDS
AAGAATGAATGATTTGGAGA+AGG 0.530077 5_2:+56650095 None:intergenic
GTTCCACTAAACAATAAAGA+TGG 0.532133 5_2:+56645107 None:intergenic
ACAACGAGCAAATTGACAAA+AGG 0.532368 5_2:+56645334 None:intergenic
CCCAGCATTAACCATTTCCA+AGG 0.532924 5_2:-56645622 Msa0777570:intron
GATTTGGAGAAGGGTGATGG+AGG 0.537338 5_2:+56650105 None:intergenic
GCAAGCCACAATCATGGGAC+CGG 0.541067 5_2:-56648118 Msa0777570:CDS
TTCCTATAGCTAGGAATACC+AGG 0.541264 5_2:+56644980 None:intergenic
CACACATGTACAAGACCGAC+AGG 0.541851 5_2:-56645269 Msa0777570:CDS
GACCTGGTATTCCTAGCTAT+AGG 0.542040 5_2:-56644982 Msa0777570:three_prime_UTR
AATCTTTGTACTTGTTGACC+TGG 0.546880 5_2:-56644998 Msa0777570:three_prime_UTR
ATAAGATATTTCCTATAGCT+AGG 0.549769 5_2:+56644971 None:intergenic
TGGCTGAGGACATGTTCCAC+TGG 0.551041 5_2:-56648140 Msa0777570:CDS
GCAGGGTAGAATACCTTTGG+TGG 0.551279 5_2:+56648027 None:intergenic
TGGAACATGTCCTCAGCCAC+AGG 0.551736 5_2:+56648144 None:intergenic
ATCAGCCGGTCCCATGATTG+TGG 0.551941 5_2:+56648113 None:intergenic
AATGATTTGGAGAAGGGTGA+TGG 0.555943 5_2:+56650102 None:intergenic
CACCCAAACATCAACAGTAA+TGG 0.557095 5_2:-56645681 Msa0777570:CDS
ACAAACCTGGGTCGGAAGCG+TGG 0.557176 5_2:+56650069 None:intergenic
GTGGAACTTGAAGCTGGTAA+GGG 0.557221 5_2:-56645091 Msa0777570:three_prime_UTR
CCTTGGAAATGGTTAATGCT+GGG 0.567271 5_2:+56645622 None:intergenic
CTGTGTCCAGCTGCGAGCTG+TGG 0.570255 5_2:+56645233 None:intergenic
ATTCACAATTGATAAATGGG+TGG 0.570929 5_2:+56645066 None:intergenic
ACGAATCTTGAAGGAGCTCA+AGG 0.573806 5_2:-56649895 Msa0777570:CDS
TTCACAATTGATAAATGGGT+GGG 0.583857 5_2:+56645067 None:intergenic
CCATGATTGTGGCTTGCCAG+TGG 0.587184 5_2:+56648124 None:intergenic
CATTACTGTTGATGTTTGGG+TGG 0.591313 5_2:+56645682 None:intergenic
GATGTTTGGGTGGAACACCT+TGG 0.592752 5_2:+56645692 None:intergenic
CCAGTATATGGGCTATCAGC+CGG 0.596648 5_2:+56648099 None:intergenic
GCTGCTCTTATTGAACAGCT+AGG 0.596651 5_2:+56645182 None:intergenic
CTGGACACAGAAGTATGCCA+TGG 0.597546 5_2:-56645220 Msa0777570:CDS
GTTGTTTATATCAGGTCCTG+TGG 0.599795 5_2:-56648160 Msa0777570:intron
TGTGCAATTTCAGGAACAAG+TGG 0.608694 5_2:+56645288 None:intergenic
TATATGTCTCGACATTCTGA+AGG 0.618427 5_2:-56645655 Msa0777570:CDS
CTATCCCTTCAAGCCACCAA+AGG 0.619090 5_2:-56648040 Msa0777570:intron
GAGGAAAATGAATTGAAACC+AGG 0.619103 5_2:+56648067 None:intergenic
CCTGCACTGCATGAAGTTGG+GGG 0.626857 5_2:+56649858 None:intergenic
GGAGCTCAAGGATTTGCAGA+AGG 0.628349 5_2:-56649883 Msa0777570:CDS
TGGACACAGAAGTATGCCAT+GGG 0.652544 5_2:-56645219 Msa0777570:CDS
GGACAAACATGATCATCCCA+TGG 0.655565 5_2:+56645203 None:intergenic
GGCTTGAAGGGATAGTCAGG+AGG 0.665116 5_2:+56648048 None:intergenic
TCGACATTCTGAAGGAACAG+TGG 0.672640 5_2:-56645647 Msa0777570:CDS
CTGCACTGCATGAAGTTGGG+GGG 0.679610 5_2:+56649859 None:intergenic
ACACATGTACAAGACCGACA+GGG 0.717087 5_2:-56645268 Msa0777570:CDS
GCTGATAGCCCATATACTGG+TGG 0.737012 5_2:-56648096 Msa0777570:CDS
CAGGAACAAGTGGATCATCG+GGG 0.748108 5_2:+56645298 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATATTTTTCTTTGAA+TGG + chr5_2:56644930-56644949 None:intergenic 10.0%
!!! TTTTCTTAAAACTTTTATAT+TGG - chr5_2:56645305-56645324 Msa0777570:CDS 10.0%
!!! AAAATTGCAAATTTTCAAAT+AGG + chr5_2:56645676-56645695 None:intergenic 15.0%
!!! TAAATTTGTTTCTTCTAAAA+TGG - chr5_2:56645925-56645944 Msa0777570:intron 15.0%
!!! TGTAATTTTTATCCATAAAA+TGG - chr5_2:56645966-56645985 Msa0777570:intron 15.0%
!!! GTAATTTTTATCCATAAAAT+GGG - chr5_2:56645967-56645986 Msa0777570:intron 15.0%
!!! TCTTTTTTTAAAATTTTGCT+TGG - chr5_2:56646035-56646054 Msa0777570:intron 15.0%
!! GCTTAAAAAAAAGATATTAA+TGG + chr5_2:56646225-56646244 None:intergenic 15.0%
!! AATAAAATGAAAATATAACC+CGG - chr5_2:56646289-56646308 Msa0777570:intron 15.0%
!! TGTTATAATATGTATGTTAA+TGG - chr5_2:56646464-56646483 Msa0777570:intron 15.0%
!! GAATAATTAATAACTAAACA+TGG - chr5_2:56646895-56646914 Msa0777570:intron 15.0%
!! CAACTATAAAATATTATGTA+AGG + chr5_2:56647655-56647674 None:intergenic 15.0%
!!! TACATAATATTTTATAGTTG+AGG - chr5_2:56647655-56647674 Msa0777570:intron 15.0%
!!! ACATAATATTTTATAGTTGA+GGG - chr5_2:56647656-56647675 Msa0777570:intron 15.0%
!! TTTCTATATTAAAATCATAG+AGG - chr5_2:56648498-56648517 Msa0777570:intron 15.0%
!! AATATTCACAATTGATAAAT+GGG + chr5_2:56650031-56650050 None:intergenic 15.0%
!! ATAGGAAATATCTTATTATT+TGG - chr5_2:56650127-56650146 Msa0777570:five_prime_UTR 15.0%
!! ATTCTTGAAAATCAAAGAAA+TGG + chr5_2:56644895-56644914 None:intergenic 20.0%
!! AAAAAGTTGAAGAATTGAAA+GGG + chr5_2:56645069-56645088 None:intergenic 20.0%
!! AAAAAAGTTGAAGAATTGAA+AGG + chr5_2:56645070-56645089 None:intergenic 20.0%
!! GATAAATGGTTAAAAATGAA+TGG + chr5_2:56645112-56645131 None:intergenic 20.0%
!!! TATTTAAGTTTGAGTGATTA+TGG - chr5_2:56645166-56645185 Msa0777570:three_prime_UTR 20.0%
!! TTAATAAAAAAAAGGGGAAA+TGG + chr5_2:56645277-56645296 None:intergenic 20.0%
!! TTATATGATCAAACTAAGTT+AGG + chr5_2:56645701-56645720 None:intergenic 20.0%
!! CACATAACTTATTAATGATT+TGG + chr5_2:56646186-56646205 None:intergenic 20.0%
!! ATCATTAATAAGTTATGTGA+TGG - chr5_2:56646187-56646206 Msa0777570:intron 20.0%
!!! TCATTTTATTTGCTGAAAAA+TGG + chr5_2:56646279-56646298 None:intergenic 20.0%
!! ATAAAATGAAAATATAACCC+GGG - chr5_2:56646290-56646309 Msa0777570:intron 20.0%
!! GAAAATGATAAATGTTTGAA+GGG - chr5_2:56646486-56646505 Msa0777570:intron 20.0%
!! AAAATGATAAATGTTTGAAG+GGG - chr5_2:56646487-56646506 Msa0777570:intron 20.0%
!!! AAATGAGACATACATTTTAT+AGG - chr5_2:56646663-56646682 Msa0777570:intron 20.0%
!! AAAGGTAAATATATGCTAAA+GGG + chr5_2:56646789-56646808 None:intergenic 20.0%
!! AAAAGGTAAATATATGCTAA+AGG + chr5_2:56646790-56646809 None:intergenic 20.0%
!! GATGAAATAACATATACAAA+AGG + chr5_2:56646807-56646826 None:intergenic 20.0%
!! TAATTATTCTTCAGAAGAAA+AGG + chr5_2:56646884-56646903 None:intergenic 20.0%
!!! TCGTTTTCTCAAATTATTTT+TGG - chr5_2:56647418-56647437 Msa0777570:intron 20.0%
!!! CATAATATTTTATAGTTGAG+GGG - chr5_2:56647657-56647676 Msa0777570:intron 20.0%
!!! ATTTTTTCCTTTTCATGATT+GGG - chr5_2:56648090-56648109 Msa0777570:CDS 20.0%
!! TTATTGAATAAAATCCATGT+GGG + chr5_2:56648283-56648302 None:intergenic 20.0%
!!! GTTTTAGTTAAGAAATTCAT+TGG - chr5_2:56648582-56648601 Msa0777570:intron 20.0%
!!! CTTTTACATAAATTATGACA+TGG + chr5_2:56649934-56649953 None:intergenic 20.0%
!! CAATATTCACAATTGATAAA+TGG + chr5_2:56650032-56650051 None:intergenic 20.0%
! AATTGAAAGGGAAAATGAAA+AGG + chr5_2:56645057-56645076 None:intergenic 25.0%
!!! TTGTTGATTTGTTGTGTTTA+TGG - chr5_2:56645364-56645383 Msa0777570:intron 25.0%
! AAAATAACCTATAACATGCT+TGG - chr5_2:56645472-56645491 Msa0777570:intron 25.0%
! TTAAGCTCAAAATTATGCAT+TGG - chr5_2:56645801-56645820 Msa0777570:intron 25.0%
! TGAAGAAACAATGAACAATT+AGG + chr5_2:56645876-56645895 None:intergenic 25.0%
!! TAATAAGTTATGTGATGGAA+TGG - chr5_2:56646192-56646211 Msa0777570:intron 25.0%
!!! TTTTTTAAGCCTGAAATACT+AGG - chr5_2:56646235-56646254 Msa0777570:intron 25.0%
! TAAAATGAAAATATAACCCG+GGG - chr5_2:56646291-56646310 Msa0777570:intron 25.0%
! AAAGTATAACATTAGTGTGT+GGG + chr5_2:56646430-56646449 None:intergenic 25.0%
!! AAAAGTATAACATTAGTGTG+TGG + chr5_2:56646431-56646450 None:intergenic 25.0%
! GGAAAATGATAAATGTTTGA+AGG - chr5_2:56646485-56646504 Msa0777570:intron 25.0%
!!! TGATTTGTTTGTAATTAGCT+TGG - chr5_2:56646851-56646870 Msa0777570:intron 25.0%
!! GATTTGTTTGTAATTAGCTT+GGG - chr5_2:56646852-56646871 Msa0777570:intron 25.0%
!! ATTTGTTTGTAATTAGCTTG+GGG - chr5_2:56646853-56646872 Msa0777570:intron 25.0%
!!! TTGTTGTTGTTGTTTATATC+AGG - chr5_2:56646923-56646942 Msa0777570:intron 25.0%
!!! TTCAAAAGCATTTTGATTCA+AGG - chr5_2:56647253-56647272 Msa0777570:intron 25.0%
!!! TTGTTTTTCTCTTTTGTTGT+GGG - chr5_2:56647815-56647834 Msa0777570:intron 25.0%
!!! GATTTTTTCCTTTTCATGAT+TGG - chr5_2:56648089-56648108 Msa0777570:CDS 25.0%
!! ATTTTTACCCAATCATGAAA+AGG + chr5_2:56648100-56648119 None:intergenic 25.0%
! CATGATTGGGTAAAAATATT+TGG - chr5_2:56648103-56648122 Msa0777570:CDS 25.0%
! CTTATTGAATAAAATCCATG+TGG + chr5_2:56648284-56648303 None:intergenic 25.0%
! GAAAACACATTACACATATA+TGG + chr5_2:56648449-56648468 None:intergenic 25.0%
! TGCTAAGAAAAGTTGAAATT+AGG - chr5_2:56648733-56648752 Msa0777570:intron 25.0%
! TGTATATTGTTTAGATACAG+AGG - chr5_2:56648816-56648835 Msa0777570:intron 25.0%
!!! TTTCTCGTAGATTTTTGTTT+CGG - chr5_2:56649113-56649132 Msa0777570:intron 25.0%
! CATTATTTATGTTCAGTAAG+TGG + chr5_2:56649525-56649544 None:intergenic 25.0%
! AAATATACTACGACAATACT+CGG + chr5_2:56649598-56649617 None:intergenic 25.0%
! ACTTCAACCAAAATTATAAC+CGG + chr5_2:56649646-56649665 None:intergenic 25.0%
! ATAAGATATTTCCTATAGCT+AGG + chr5_2:56650123-56650142 None:intergenic 25.0%
! AGAATGAATGATTTGGAGAA+GGG + chr5_2:56644998-56645017 None:intergenic 30.0%
! AAGAATGAATGATTTGGAGA+AGG + chr5_2:56644999-56645018 None:intergenic 30.0%
TGGAAGAAGAATGAATGATT+TGG + chr5_2:56645005-56645024 None:intergenic 30.0%
!!! TCTTCAACTTTTTTCGTTTC+TGG - chr5_2:56645076-56645095 Msa0777570:three_prime_UTR 30.0%
!!! CTTCAACTTTTTTCGTTTCT+GGG - chr5_2:56645077-56645096 Msa0777570:three_prime_UTR 30.0%
ATTATGAGACGAGTGATAAA+TGG + chr5_2:56645126-56645145 None:intergenic 30.0%
!! TGATTTGTTGTGTTTATGGA+TGG - chr5_2:56645368-56645387 Msa0777570:intron 30.0%
AAATCACAATTTCCTTATCC+CGG + chr5_2:56645519-56645538 None:intergenic 30.0%
! GGATAAGGAAATTGTGATTT+TGG - chr5_2:56645519-56645538 Msa0777570:intron 30.0%
! TGATAATGCGTTATTGATTG+TGG - chr5_2:56645549-56645568 Msa0777570:intron 30.0%
! ATAGGTAGAATCCCATTTTA+TGG + chr5_2:56645981-56646000 None:intergenic 30.0%
GAATTCAAACCTAGTATTTC+AGG + chr5_2:56646247-56646266 None:intergenic 30.0%
AAAATGAAAATATAACCCGG+GGG - chr5_2:56646292-56646311 Msa0777570:intron 30.0%
TAGAATCAACGTTAATCCAA+CGG + chr5_2:56646366-56646385 None:intergenic 30.0%
!! GGATTAACGTTGATTCTATT+TGG - chr5_2:56646368-56646387 Msa0777570:intron 30.0%
!! TAACGTTGATTCTATTTGGA+AGG - chr5_2:56646372-56646391 Msa0777570:intron 30.0%
TGTCTGTAATCAATTGTTTG+TGG - chr5_2:56646587-56646606 Msa0777570:intron 30.0%
! TAGTTGATACGTACATTTGT+TGG - chr5_2:56646626-56646645 Msa0777570:intron 30.0%
! TACGTACATTTGTTGGAATT+TGG - chr5_2:56646633-56646652 Msa0777570:intron 30.0%
TCTTCTTGAAGTTGTATCTA+TGG - chr5_2:56647188-56647207 Msa0777570:intron 30.0%
! ATGTGACTGTGAACTTATTT+TGG - chr5_2:56647280-56647299 Msa0777570:intron 30.0%
GAAGTTGTCTTCTTTGTAAA+AGG - chr5_2:56647756-56647775 Msa0777570:intron 30.0%
TCTTCTTTGTAAAAGGCAAA+TGG - chr5_2:56647763-56647782 Msa0777570:intron 30.0%
!! CTTGTTTTTCTCTTTTGTTG+TGG - chr5_2:56647814-56647833 Msa0777570:intron 30.0%
!!! TTTTGTTGACTTAGTTTCCT+AGG - chr5_2:56647840-56647859 Msa0777570:intron 30.0%
GAAAAATACAAGAGTGGATA+AGG + chr5_2:56647979-56647998 None:intergenic 30.0%
! AGATTAAGAGTAGAGTACTA+TGG - chr5_2:56648043-56648062 Msa0777570:CDS 30.0%
! GATTAAGAGTAGAGTACTAT+GGG - chr5_2:56648044-56648063 Msa0777570:CDS 30.0%
TTGTCCACTAATAGAGTTTA+CGG - chr5_2:56648151-56648170 Msa0777570:intron 30.0%
TCTAACAATCACTCTCTTAT+TGG - chr5_2:56648201-56648220 Msa0777570:intron 30.0%
CTAACAATCACTCTCTTATT+GGG - chr5_2:56648202-56648221 Msa0777570:intron 30.0%
TCTAAGTATAGATCTAGACA+TGG - chr5_2:56648635-56648654 Msa0777570:intron 30.0%
TTAGGATGCAAGAAGAAAAT+AGG - chr5_2:56648751-56648770 Msa0777570:intron 30.0%
GAGAGAAGATAGAGAAAAAT+AGG - chr5_2:56648786-56648805 Msa0777570:intron 30.0%
TTGTTTAGATACAGAGGAAA+TGG - chr5_2:56648822-56648841 Msa0777570:intron 30.0%
AAATGGATGTATGAGGAAAA+TGG - chr5_2:56648885-56648904 Msa0777570:intron 30.0%
TCAAAACTCAGAAATTGTGA+AGG + chr5_2:56648912-56648931 None:intergenic 30.0%
!! TCACAATTTCTGAGTTTTGA+AGG - chr5_2:56648912-56648931 Msa0777570:intron 30.0%
AGTAGGTTATGATTATTGCA+AGG + chr5_2:56649010-56649029 None:intergenic 30.0%
GATAGAAAAGGATAAGACAT+GGG + chr5_2:56649045-56649064 None:intergenic 30.0%
!!! CCTATTTTTATCTGTTTTGG+CGG - chr5_2:56649070-56649089 Msa0777570:intron 30.0%
!!! CTATTTTTATCTGTTTTGGC+GGG - chr5_2:56649071-56649090 Msa0777570:intron 30.0%
!! TTCTCGTAGATTTTTGTTTC+GGG - chr5_2:56649114-56649133 Msa0777570:intron 30.0%
GTCTTCTTATAACTTACAGT+AGG - chr5_2:56649238-56649257 Msa0777570:intron 30.0%
GTAATATCAAACCTTGGAAA+TGG + chr5_2:56649483-56649502 None:intergenic 30.0%
! TGTCGTAGTATATTTTCAGT+TGG - chr5_2:56649603-56649622 Msa0777570:intron 30.0%
! GTCGTAGTATATTTTCAGTT+GGG - chr5_2:56649604-56649623 Msa0777570:intron 30.0%
! GGTTGAAGTTTTACGTATAA+AGG - chr5_2:56649657-56649676 Msa0777570:intron 30.0%
!! TAATAGAGGGATTAGTTTCT+CGG + chr5_2:56649732-56649751 None:intergenic 30.0%
GAAACTAATCCCTCTATTAT+AGG - chr5_2:56649733-56649752 Msa0777570:intron 30.0%
ACAAAAGGACCTATAATAGA+GGG + chr5_2:56649745-56649764 None:intergenic 30.0%
ATGCCATCTTTATTGTTTAG+TGG - chr5_2:56649981-56650000 Msa0777570:intron 30.0%
GTTCCACTAAACAATAAAGA+TGG + chr5_2:56649987-56650006 None:intergenic 30.0%
TTCACAATTGATAAATGGGT+GGG + chr5_2:56650027-56650046 None:intergenic 30.0%
ATTCACAATTGATAAATGGG+TGG + chr5_2:56650028-56650047 None:intergenic 30.0%
!! TTGTAAGACACTTGTTATTG+AGG - chr5_2:56650053-56650072 Msa0777570:intron 30.0%
AGGAGAAGAAAAACAAACCT+GGG + chr5_2:56645037-56645056 None:intergenic 35.0%
AAGGAGAAGAAAAACAAACC+TGG + chr5_2:56645038-56645057 None:intergenic 35.0%
! GCAAATTTTCTATTGCAGGA+TGG + chr5_2:56645634-56645653 None:intergenic 35.0%
TCCTGCAATAGAAAATTTGC+AGG - chr5_2:56645634-56645653 Msa0777570:CDS 35.0%
! TCCTGCAAATTTTCTATTGC+AGG + chr5_2:56645638-56645657 None:intergenic 35.0%
CAAATAGGTCGTGATCAAAT+AGG + chr5_2:56645661-56645680 None:intergenic 35.0%
TCAACCGTGTCATGTATTAT+GGG - chr5_2:56645838-56645857 Msa0777570:intron 35.0%
! TCTAAAACCAATGCACACAA+AGG + chr5_2:56646079-56646098 None:intergenic 35.0%
!!! TTGTGTGCATTGGTTTTAGA+TGG - chr5_2:56646079-56646098 Msa0777570:intron 35.0%
!!! TGCATTGGTTTTAGATGGTT+AGG - chr5_2:56646084-56646103 Msa0777570:intron 35.0%
GTTCATTCCAGTGACTAATT+TGG - chr5_2:56646561-56646580 Msa0777570:intron 35.0%
AATCAATTGTTTGTGGAGCT+TGG - chr5_2:56646594-56646613 Msa0777570:intron 35.0%
ATCAATTGTTTGTGGAGCTT+GGG - chr5_2:56646595-56646614 Msa0777570:intron 35.0%
AAGGGAACTTATTAGAAGAG+AGG + chr5_2:56646771-56646790 None:intergenic 35.0%
GAGGAAAATGAATTGAAACC+AGG + chr5_2:56647027-56647046 None:intergenic 35.0%
CTAATGTGAGTAATGAAGCA+GGG + chr5_2:56647084-56647103 None:intergenic 35.0%
! TCTTGTATTGTCGTGCTTTT+TGG - chr5_2:56647106-56647125 Msa0777570:intron 35.0%
TCAAGAAGAACATGTTAGAG+AGG + chr5_2:56647177-56647196 None:intergenic 35.0%
TGTAAGCATTTGTGCAAAAC+AGG + chr5_2:56647557-56647576 None:intergenic 35.0%
AAACTATTTGAGTACCCTTC+TGG + chr5_2:56647723-56647742 None:intergenic 35.0%
GTAAAAGGCAAATGGAAGTA+TGG - chr5_2:56647771-56647790 Msa0777570:intron 35.0%
!!! TTAGTTTCCTAGGAGCATTT+TGG - chr5_2:56647850-56647869 Msa0777570:intron 35.0%
!!! TAGTTTCCTAGGAGCATTTT+GGG - chr5_2:56647851-56647870 Msa0777570:intron 35.0%
AAAAGAAACCACATAGGGAT+GGG + chr5_2:56647948-56647967 None:intergenic 35.0%
CCTTCAAAAGAAACCACATA+GGG + chr5_2:56647953-56647972 None:intergenic 35.0%
TCCTTCAAAAGAAACCACAT+AGG + chr5_2:56647954-56647973 None:intergenic 35.0%
ACAGAGGAAAAATACAAGAG+TGG + chr5_2:56647985-56648004 None:intergenic 35.0%
TTCCTCTGTATTTCATGATG+CGG - chr5_2:56647996-56648015 Msa0777570:intron 35.0%
AGTACTCTACTCTTAATCTG+TGG + chr5_2:56648042-56648061 None:intergenic 35.0%
! TGGATTTCTCAGTCCATTTT+AGG - chr5_2:56648123-56648142 Msa0777570:CDS 35.0%
CTTTCCGTAAACTCTATTAG+TGG + chr5_2:56648158-56648177 None:intergenic 35.0%
CTAATAGAGTTTACGGAAAG+AGG - chr5_2:56648158-56648177 Msa0777570:intron 35.0%
!! GAGTGTTAGAGAGTGTTATA+AGG - chr5_2:56648303-56648322 Msa0777570:intron 35.0%
! TAGATCTAGACATGGTTCTA+TGG - chr5_2:56648643-56648662 Msa0777570:intron 35.0%
! AGATCTAGACATGGTTCTAT+GGG - chr5_2:56648644-56648663 Msa0777570:intron 35.0%
! TTTGTTGGTTGAACGGAAAA+TGG - chr5_2:56648868-56648887 Msa0777570:intron 35.0%
ATTAGTATACACCGTTAAGG+TGG + chr5_2:56648971-56648990 None:intergenic 35.0%
ATGGGAGAAACAAAAACAGT+AGG + chr5_2:56649027-56649046 None:intergenic 35.0%
CGATAGAAAAGGATAAGACA+TGG + chr5_2:56649046-56649065 None:intergenic 35.0%
! TGTCTTATCCTTTTCTATCG+AGG - chr5_2:56649046-56649065 Msa0777570:intron 35.0%
! GTCTTATCCTTTTCTATCGA+GGG - chr5_2:56649047-56649066 Msa0777570:intron 35.0%
!!! GGGCCTATTTTTATCTGTTT+TGG - chr5_2:56649067-56649086 Msa0777570:intron 35.0%
CCGCCAAAACAGATAAAAAT+AGG + chr5_2:56649073-56649092 None:intergenic 35.0%
!! TCTCGTAGATTTTTGTTTCG+GGG - chr5_2:56649115-56649134 Msa0777570:intron 35.0%
AGAGAGCTATAAAAACAGAC+TGG + chr5_2:56649202-56649221 None:intergenic 35.0%
!!! AAACTACTGCTGTTTTACTG+TGG - chr5_2:56649285-56649304 Msa0777570:intron 35.0%
! GTTTTACTGTGGTAGTAAGT+TGG - chr5_2:56649296-56649315 Msa0777570:intron 35.0%
TGCCATTACTGTTGATGTTT+GGG + chr5_2:56649415-56649434 None:intergenic 35.0%
TATATGTCTCGACATTCTGA+AGG - chr5_2:56649436-56649455 Msa0777570:intron 35.0%
AGCAGAGTAATATCAAACCT+TGG + chr5_2:56649489-56649508 None:intergenic 35.0%
AATTATAACCGGCTAATGCT+CGG + chr5_2:56649635-56649654 None:intergenic 35.0%
! GCATTAGCCGGTTATAATTT+TGG - chr5_2:56649636-56649655 Msa0777570:intron 35.0%
!! AATAGAGGGATTAGTTTCTC+GGG + chr5_2:56649731-56649750 None:intergenic 35.0%
GACAAAAGGACCTATAATAG+AGG + chr5_2:56649746-56649765 None:intergenic 35.0%
ACAACGAGCAAATTGACAAA+AGG + chr5_2:56649760-56649779 None:intergenic 35.0%
TTGTACATGTGTGCAATTTC+AGG + chr5_2:56649815-56649834 None:intergenic 35.0%
! AATCTTTGTACTTGTTGACC+TGG - chr5_2:56650093-56650112 Msa0777570:five_prime_UTR 35.0%
TTGGATTGTGTTGTAGATCT+TGG - chr5_2:56650146-56650165 Msa0777570:five_prime_UTR 35.0%
! AATGATTTGGAGAAGGGTGA+TGG + chr5_2:56644992-56645011 None:intergenic 40.0%
GAAGAAAAACAAACCTGGGT+CGG + chr5_2:56645033-56645052 None:intergenic 40.0%
!!! GGATCCGAGGTTTTAAATAG+CGG - chr5_2:56645493-56645512 Msa0777570:intron 40.0%
! TATGCATTGGCATGCGTAAT+AGG - chr5_2:56645814-56645833 Msa0777570:intron 40.0%
! ATGCATTGGCATGCGTAATA+GGG - chr5_2:56645815-56645834 Msa0777570:intron 40.0%
GTCAACCGTGTCATGTATTA+TGG - chr5_2:56645837-56645856 Msa0777570:intron 40.0%
CGAAAACAGCTGCAACAAAA+CGG + chr5_2:56646005-56646024 None:intergenic 40.0%
!! TTTTGTTGCAGCTGTTTTCG+CGG - chr5_2:56646005-56646024 Msa0777570:intron 40.0%
!!! TGGTTTTAGATGGTTAGGTG+AGG - chr5_2:56646089-56646108 Msa0777570:intron 40.0%
!!! GGTTTTAGATGGTTAGGTGA+GGG - chr5_2:56646090-56646109 Msa0777570:intron 40.0%
! AGGTGAGGGTTACATTTTAG+CGG - chr5_2:56646104-56646123 Msa0777570:intron 40.0%
!! AGCTTGGTGGATTTCTTATG+AGG - chr5_2:56646130-56646149 Msa0777570:intron 40.0%
!! GCTTGGTGGATTTCTTATGA+GGG - chr5_2:56646131-56646150 Msa0777570:intron 40.0%
!! CTTGGTGGATTTCTTATGAG+GGG - chr5_2:56646132-56646151 Msa0777570:intron 40.0%
GACACATCCAAATTAGTCAC+TGG + chr5_2:56646571-56646590 None:intergenic 40.0%
TCAATTGTTTGTGGAGCTTG+GGG - chr5_2:56646596-56646615 Msa0777570:intron 40.0%
GTTGTTTATATCAGGTCCTG+TGG - chr5_2:56646931-56646950 Msa0777570:intron 40.0%
! AATACCTTTGGTGGCTTGAA+GGG + chr5_2:56647058-56647077 None:intergenic 40.0%
CCTAATGTGAGTAATGAAGC+AGG + chr5_2:56647085-56647104 None:intergenic 40.0%
CCTGCTTCATTACTCACATT+AGG - chr5_2:56647082-56647101 Msa0777570:intron 40.0%
TGGTCTCCTTCATTCTTAAG+CGG - chr5_2:56647300-56647319 Msa0777570:intron 40.0%
!! GTACCGACATTTTCGATGAA+AGG - chr5_2:56647350-56647369 Msa0777570:intron 40.0%
ACGCCTTTCATCGAAAATGT+CGG + chr5_2:56647356-56647375 None:intergenic 40.0%
TTCACTGCAATCACATGTCT+CGG + chr5_2:56647393-56647412 None:intergenic 40.0%
TGTCTTTGTCCTTGCTTCAT+AGG - chr5_2:56647462-56647481 Msa0777570:intron 40.0%
GTCTTTGTCCTTGCTTCATA+GGG - chr5_2:56647463-56647482 Msa0777570:intron 40.0%
ATTCTCAACCCTATGAAGCA+AGG + chr5_2:56647474-56647493 None:intergenic 40.0%
! GTTGAGGGGTAGAATACTTT+TGG - chr5_2:56647671-56647690 Msa0777570:intron 40.0%
! AGGGGTAGAATACTTTTGGT+GGG - chr5_2:56647675-56647694 Msa0777570:intron 40.0%
TAAATTTGAAGGGGCCAGAA+GGG - chr5_2:56647706-56647725 Msa0777570:intron 40.0%
! AAGGCAAATGGAAGTATGGT+TGG - chr5_2:56647775-56647794 Msa0777570:intron 40.0%
! AGGCAAATGGAAGTATGGTT+GGG - chr5_2:56647776-56647795 Msa0777570:intron 40.0%
!!! AGTTTCCTAGGAGCATTTTG+GGG - chr5_2:56647852-56647871 Msa0777570:intron 40.0%
TCCTTCTGATGTGTATGCTT+TGG - chr5_2:56647901-56647920 Msa0777570:intron 40.0%
CCTTCTGATGTGTATGCTTT+GGG - chr5_2:56647902-56647921 Msa0777570:intron 40.0%
CTTCTGATGTGTATGCTTTG+GGG - chr5_2:56647903-56647922 Msa0777570:intron 40.0%
TTCTGATGTGTATGCTTTGG+GGG - chr5_2:56647904-56647923 Msa0777570:intron 40.0%
AAAGAAACCACATAGGGATG+GGG + chr5_2:56647947-56647966 None:intergenic 40.0%
CAAAAGAAACCACATAGGGA+TGG + chr5_2:56647949-56647968 None:intergenic 40.0%
! CCCTATGTGGTTTCTTTTGA+AGG - chr5_2:56647950-56647969 Msa0777570:intron 40.0%
GTGGACAACTTCTCCTAAAA+TGG + chr5_2:56648139-56648158 None:intergenic 40.0%
TTATTCGTAAGCGAGAGTCT+TGG - chr5_2:56648524-56648543 Msa0777570:intron 40.0%
TGTTCAGCACAATCTCATCT+TGG - chr5_2:56648704-56648723 Msa0777570:intron 40.0%
GAACGGAAAATGGATGTATG+AGG - chr5_2:56648878-56648897 Msa0777570:intron 40.0%
! GGGATTAGTATACACCGTTA+AGG + chr5_2:56648974-56648993 None:intergenic 40.0%
AAATAGGCCCTCGATAGAAA+AGG + chr5_2:56649057-56649076 None:intergenic 40.0%
!! AACAGACTGGATTAGCAATG+TGG + chr5_2:56649189-56649208 None:intergenic 40.0%
CTAATGTGCTTAACAACTGC+AGG - chr5_2:56649364-56649383 Msa0777570:intron 40.0%
!!! AACAACTGCAGGTTGCTTTT+AGG - chr5_2:56649375-56649394 Msa0777570:intron 40.0%
CATTACTGTTGATGTTTGGG+TGG + chr5_2:56649412-56649431 None:intergenic 40.0%
CACCCAAACATCAACAGTAA+TGG - chr5_2:56649410-56649429 Msa0777570:intron 40.0%
CTGCCATTACTGTTGATGTT+TGG + chr5_2:56649416-56649435 None:intergenic 40.0%
CCTTGGAAATGGTTAATGCT+GGG + chr5_2:56649472-56649491 None:intergenic 40.0%
ACCTTGGAAATGGTTAATGC+TGG + chr5_2:56649473-56649492 None:intergenic 40.0%
!! ATAGAGGGATTAGTTTCTCG+GGG + chr5_2:56649730-56649749 None:intergenic 40.0%
! GTCAATTTGCTCGTTGTTGA+CGG - chr5_2:56649763-56649782 Msa0777570:intron 40.0%
TTCAGGAACAAGTGGATCAT+CGG + chr5_2:56649798-56649817 None:intergenic 40.0%
TGTGCAATTTCAGGAACAAG+TGG + chr5_2:56649806-56649825 None:intergenic 40.0%
TGTTTAGTGGAACTTGAAGC+TGG - chr5_2:56649994-56650013 Msa0777570:intron 40.0%
TTCCTATAGCTAGGAATACC+AGG + chr5_2:56650114-56650133 None:intergenic 40.0%
ACGAATCTTGAAGGAGCTCA+AGG - chr5_2:56645196-56645215 Msa0777570:exon 45.0%
AACCTGCACTGCATGAAGTT+GGG + chr5_2:56645238-56645257 None:intergenic 45.0%
AAACCTGCACTGCATGAAGT+TGG + chr5_2:56645239-56645258 None:intergenic 45.0%
CTCGGATCCAAGCATGTTAT+AGG + chr5_2:56645482-56645501 None:intergenic 45.0%
CTATAACATGCTTGGATCCG+AGG - chr5_2:56645480-56645499 Msa0777570:intron 45.0%
TTTAAATAGCGGCCGGGATA+AGG - chr5_2:56645504-56645523 Msa0777570:intron 45.0%
CCGTCCCATAATACATGACA+CGG + chr5_2:56645845-56645864 None:intergenic 45.0%
CCGTGTCATGTATTATGGGA+CGG - chr5_2:56645842-56645861 Msa0777570:intron 45.0%
TGTCATGTATTATGGGACGG+AGG - chr5_2:56645845-56645864 Msa0777570:intron 45.0%
GTCATGTATTATGGGACGGA+GGG - chr5_2:56645846-56645865 Msa0777570:intron 45.0%
CAGCTGCAACAAAACGGTAT+AGG + chr5_2:56645999-56646018 None:intergenic 45.0%
TCTGCTTCCTTTGTGTGCAT+TGG - chr5_2:56646069-56646088 Msa0777570:intron 45.0%
!! TACATTTTAGCGGCAGAGCT+TGG - chr5_2:56646114-56646133 Msa0777570:intron 45.0%
ACGTTAATCCAACGGTGTAG+TGG + chr5_2:56646358-56646377 None:intergenic 45.0%
CTGATCTTGTATGAGACAGC+GGG + chr5_2:56646522-56646541 None:intergenic 45.0%
GCTGATCTTGTATGAGACAG+CGG + chr5_2:56646523-56646542 None:intergenic 45.0%
TCTCATACAAGATCAGCCAC+TGG - chr5_2:56646526-56646545 Msa0777570:intron 45.0%
CTCATACAAGATCAGCCACT+GGG - chr5_2:56646527-56646546 Msa0777570:intron 45.0%
CAATTGTTTGTGGAGCTTGG+GGG - chr5_2:56646597-56646616 Msa0777570:intron 45.0%
! TCCATGCTTTTCCCTCTGAA+AGG - chr5_2:56646743-56646762 Msa0777570:intron 45.0%
GGAACACACCACCAGTATAT+GGG + chr5_2:56647006-56647025 None:intergenic 45.0%
AGGAACACACCACCAGTATA+TGG + chr5_2:56647007-56647026 None:intergenic 45.0%
! ATATACTGGTGGTGTGTTCC+TGG - chr5_2:56647006-56647025 Msa0777570:intron 45.0%
! GAATACCTTTGGTGGCTTGA+AGG + chr5_2:56647059-56647078 None:intergenic 45.0%
GAAGCAGGGTAGAATACCTT+TGG + chr5_2:56647070-56647089 None:intergenic 45.0%
!!! TGTCGTGCTTTTTGGTGTTG+TGG - chr5_2:56647114-56647133 Msa0777570:intron 45.0%
CCATGACCGCTTAAGAATGA+AGG + chr5_2:56647309-56647328 None:intergenic 45.0%
CCTTCATTCTTAAGCGGTCA+TGG - chr5_2:56647306-56647325 Msa0777570:intron 45.0%
CGAAAATGTCGGTACTACAG+AGG + chr5_2:56647345-56647364 None:intergenic 45.0%
AAGGACAAAGACACTGGACA+CGG + chr5_2:56647455-56647474 None:intergenic 45.0%
TGAAGCAAGGACAAAGACAC+TGG + chr5_2:56647461-56647480 None:intergenic 45.0%
CTGCTCGAATTGTTTCCAGT+TGG - chr5_2:56647520-56647539 Msa0777570:intron 45.0%
TCGAATTGTTTCCAGTTGGC+TGG - chr5_2:56647524-56647543 Msa0777570:intron 45.0%
! TTGTTTCCAGTTGGCTGGTT+TGG - chr5_2:56647529-56647548 Msa0777570:intron 45.0%
AGAGTGACAACCCTTGACAT+CGG - chr5_2:56647581-56647600 Msa0777570:intron 45.0%
AAAACCACACCCGATGTCAA+GGG + chr5_2:56647594-56647613 None:intergenic 45.0%
! GAGGGGTAGAATACTTTTGG+TGG - chr5_2:56647674-56647693 Msa0777570:intron 45.0%
! GGTAGAATACTTTTGGTGGG+TGG - chr5_2:56647678-56647697 Msa0777570:intron 45.0%
!! AGAATACTTTTGGTGGGTGG+TGG - chr5_2:56647681-56647700 Msa0777570:intron 45.0%
! GGTGGTGGCGTAAATTTGAA+GGG - chr5_2:56647696-56647715 Msa0777570:intron 45.0%
! GTGGTGGCGTAAATTTGAAG+GGG - chr5_2:56647697-56647716 Msa0777570:intron 45.0%
GTAAATTTGAAGGGGCCAGA+AGG - chr5_2:56647705-56647724 Msa0777570:intron 45.0%
CCCAAAGCATACACATCAGA+AGG + chr5_2:56647905-56647924 None:intergenic 45.0%
!!! TATGCTTTGGGGGTTTTCTG+TGG - chr5_2:56647914-56647933 Msa0777570:intron 45.0%
!!! ATGCTTTGGGGGTTTTCTGT+GGG - chr5_2:56647915-56647934 Msa0777570:intron 45.0%
AAGAAACCACATAGGGATGG+GGG + chr5_2:56647946-56647965 None:intergenic 45.0%
CTCCGCATCATGAAATACAG+AGG + chr5_2:56648001-56648020 None:intergenic 45.0%
CTCTGTATTTCATGATGCGG+AGG - chr5_2:56647999-56648018 Msa0777570:intron 45.0%
CTTATTGGGTGAAACCCATG+TGG - chr5_2:56648216-56648235 Msa0777570:intron 45.0%
! TGGATCCCACACTTTGGAAA+TGG - chr5_2:56648236-56648255 Msa0777570:intron 45.0%
GGGATCCATTTCCAAAGTGT+GGG + chr5_2:56648244-56648263 None:intergenic 45.0%
TGGGATCCATTTCCAAAGTG+TGG + chr5_2:56648245-56648264 None:intergenic 45.0%
GAAATGGATCCCACATAGAG+TGG - chr5_2:56648252-56648271 Msa0777570:intron 45.0%
CACTTAGCCATCCACCTTAA+CGG - chr5_2:56648957-56648976 Msa0777570:intron 45.0%
GTATACACCGTTAAGGTGGA+TGG + chr5_2:56648967-56648986 None:intergenic 45.0%
TTGCAAGGTAGCTAGTGAGA+GGG + chr5_2:56648995-56649014 None:intergenic 45.0%
ATTGCAAGGTAGCTAGTGAG+AGG + chr5_2:56648996-56649015 None:intergenic 45.0%
! TCGACATTCTGAAGGAACAG+TGG - chr5_2:56649444-56649463 Msa0777570:intron 45.0%
CCCAGCATTAACCATTTCCA+AGG - chr5_2:56649469-56649488 Msa0777570:intron 45.0%
!! TAGAGGGATTAGTTTCTCGG+GGG + chr5_2:56649729-56649748 None:intergenic 45.0%
TCAGGAACAAGTGGATCATC+GGG + chr5_2:56649797-56649816 None:intergenic 45.0%
ACACATGTACAAGACCGACA+GGG - chr5_2:56649823-56649842 Msa0777570:intron 45.0%
! TGGACACAGAAGTATGCCAT+GGG - chr5_2:56649872-56649891 Msa0777570:CDS 45.0%
GGACAAACATGATCATCCCA+TGG + chr5_2:56649891-56649910 None:intergenic 45.0%
GCTGCTCTTATTGAACAGCT+AGG + chr5_2:56649912-56649931 None:intergenic 45.0%
AGTGGAACTTGAAGCTGGTA+AGG - chr5_2:56649999-56650018 Msa0777570:intron 45.0%
GTGGAACTTGAAGCTGGTAA+GGG - chr5_2:56650000-56650019 Msa0777570:intron 45.0%
GACCTGGTATTCCTAGCTAT+AGG - chr5_2:56650109-56650128 Msa0777570:five_prime_UTR 45.0%
!!! AAATTTTTAATAAAAAAAAG+GGG + chr5_2:56645283-56645302 None:intergenic 5.0%
!!! CAAATTTTTAATAAAAAAAA+GGG + chr5_2:56645284-56645303 None:intergenic 5.0%
!!! ACAAATTTTTAATAAAAAAA+AGG + chr5_2:56645285-56645304 None:intergenic 5.0%
!! ATATATAATCTTAAAATATT+TGG + chr5_2:56646159-56646178 None:intergenic 5.0%
! GATTTGGAGAAGGGTGATGG+AGG + chr5_2:56644989-56645008 None:intergenic 50.0%
! GGCGTCGAAACGAATCTTGA+AGG - chr5_2:56645187-56645206 Msa0777570:three_prime_UTR 50.0%
GGAGCTCAAGGATTTGCAGA+AGG - chr5_2:56645208-56645227 Msa0777570:exon 50.0%
ACCTGCACTGCATGAAGTTG+GGG + chr5_2:56645237-56645256 None:intergenic 50.0%
! CCGGCCGCTATTTAAAACCT+CGG + chr5_2:56645500-56645519 None:intergenic 50.0%
!!! CCGAGGTTTTAAATAGCGGC+CGG - chr5_2:56645497-56645516 Msa0777570:intron 50.0%
!!! CGAGGTTTTAAATAGCGGCC+GGG - chr5_2:56645498-56645517 Msa0777570:intron 50.0%
!! ATTTTAGCGGCAGAGCTTGG+TGG - chr5_2:56646117-56646136 Msa0777570:intron 50.0%
GTCCTTCGAGCTGCAAAAGA+CGG - chr5_2:56646327-56646346 Msa0777570:intron 50.0%
TCTTGTATGAGACAGCGGGA+AGG + chr5_2:56646518-56646537 None:intergenic 50.0%
GAACGAACAATCTCACCCAG+TGG + chr5_2:56646545-56646564 None:intergenic 50.0%
GCCTTTCAGAGGGAAAAGCA+TGG + chr5_2:56646747-56646766 None:intergenic 50.0%
GAAGAGAGGAGCCTTTCAGA+GGG + chr5_2:56646757-56646776 None:intergenic 50.0%
AGAAGAGAGGAGCCTTTCAG+AGG + chr5_2:56646758-56646777 None:intergenic 50.0%
TATATCAGGTCCTGTGGCTG+AGG - chr5_2:56646937-56646956 Msa0777570:intron 50.0%
CACTGGCAAGCCACAATCAT+GGG - chr5_2:56646968-56646987 Msa0777570:intron 50.0%
! CCAGTATATGGGCTATCAGC+CGG + chr5_2:56646995-56647014 None:intergenic 50.0%
GCTGATAGCCCATATACTGG+TGG - chr5_2:56646995-56647014 Msa0777570:intron 50.0%
CTATCCCTTCAAGCCACCAA+AGG - chr5_2:56647051-56647070 Msa0777570:intron 50.0%
GCAGGGTAGAATACCTTTGG+TGG + chr5_2:56647067-56647086 None:intergenic 50.0%
GAGTGACAACCCTTGACATC+GGG - chr5_2:56647582-56647601 Msa0777570:intron 50.0%
GAAAACCACACCCGATGTCA+AGG + chr5_2:56647595-56647614 None:intergenic 50.0%
! GGGTGGTGGCGTAAATTTGA+AGG - chr5_2:56647695-56647714 Msa0777570:intron 50.0%
AACTGCCCCAAAATGCTCCT+AGG + chr5_2:56647860-56647879 None:intergenic 50.0%
!!! TGCTTTGGGGGTTTTCTGTG+GGG - chr5_2:56647916-56647935 Msa0777570:intron 50.0%
AGAAACCACATAGGGATGGG+GGG + chr5_2:56647945-56647964 None:intergenic 50.0%
ATGATGCGGAGGACATCAGA+AGG - chr5_2:56648010-56648029 Msa0777570:intron 50.0%
CCAAAGTGTGGGATCCACAT+GGG + chr5_2:56648233-56648252 None:intergenic 50.0%
TCCAAAGTGTGGGATCCACA+TGG + chr5_2:56648234-56648253 None:intergenic 50.0%
TGGGTCTCACCACTCTATGT+GGG + chr5_2:56648264-56648283 None:intergenic 50.0%
ATAGAGTGGTGAGACCCACA+TGG - chr5_2:56648266-56648285 Msa0777570:intron 50.0%
CGTTAAGGTGGATGGCTAAG+TGG + chr5_2:56648959-56648978 None:intergenic 50.0%
TGCAAGGTAGCTAGTGAGAG+GGG + chr5_2:56648994-56649013 None:intergenic 50.0%
!! CACGGTGGACTGTAAAAGAG+AGG + chr5_2:56649143-56649162 None:intergenic 50.0%
TTAGCAATGTGGCTGAGCAC+CGG + chr5_2:56649178-56649197 None:intergenic 50.0%
!!! GCAGGTTGCTTTTAGGACCA+AGG - chr5_2:56649382-56649401 Msa0777570:intron 50.0%
GATGTTTGGGTGGAACACCT+TGG + chr5_2:56649402-56649421 None:intergenic 50.0%
!! AGAGGGATTAGTTTCTCGGG+GGG + chr5_2:56649728-56649747 None:intergenic 50.0%
ACAAGTGGATCATCGGGGTT+GGG + chr5_2:56649791-56649810 None:intergenic 50.0%
AACAAGTGGATCATCGGGGT+TGG + chr5_2:56649792-56649811 None:intergenic 50.0%
CAGGAACAAGTGGATCATCG+GGG + chr5_2:56649796-56649815 None:intergenic 50.0%
CACACATGTACAAGACCGAC+AGG - chr5_2:56649822-56649841 Msa0777570:intron 50.0%
GGCTTCATATTTGGCCCTGT+CGG + chr5_2:56649840-56649859 None:intergenic 50.0%
GCGAGCTGTGGCTTCATATT+TGG + chr5_2:56649849-56649868 None:intergenic 50.0%
! CTGGACACAGAAGTATGCCA+TGG - chr5_2:56649871-56649890 Msa0777570:CDS 50.0%
CTGCACTGCATGAAGTTGGG+GGG + chr5_2:56645235-56645254 None:intergenic 55.0%
CCTGCACTGCATGAAGTTGG+GGG + chr5_2:56645236-56645255 None:intergenic 55.0%
GACACAAGTTCAACTCCCCC+GGG + chr5_2:56646310-56646329 None:intergenic 55.0%
GGACACAAGTTCAACTCCCC+CGG + chr5_2:56646311-56646330 None:intergenic 55.0%
! GACCGTCTTTTGCAGCTCGA+AGG + chr5_2:56646332-56646351 None:intergenic 55.0%
TGGAACATGTCCTCAGCCAC+AGG + chr5_2:56646950-56646969 None:intergenic 55.0%
TGGCTGAGGACATGTTCCAC+TGG - chr5_2:56646951-56646970 Msa0777570:intron 55.0%
! CCATGATTGTGGCTTGCCAG+TGG + chr5_2:56646970-56646989 None:intergenic 55.0%
CCACTGGCAAGCCACAATCA+TGG - chr5_2:56646967-56646986 Msa0777570:intron 55.0%
GCAAGCCACAATCATGGGAC+CGG - chr5_2:56646973-56646992 Msa0777570:intron 55.0%
ATCAGCCGGTCCCATGATTG+TGG + chr5_2:56646981-56647000 None:intergenic 55.0%
CCGGCTGATAGCCCATATAC+TGG - chr5_2:56646992-56647011 Msa0777570:intron 55.0%
GGCTTGAAGGGATAGTCAGG+AGG + chr5_2:56647046-56647065 None:intergenic 55.0%
GGTGGCTTGAAGGGATAGTC+AGG + chr5_2:56647049-56647068 None:intergenic 55.0%
CAGGATCCAAACCAGCCAAC+TGG + chr5_2:56647538-56647557 None:intergenic 55.0%
ACAACCCTTGACATCGGGTG+TGG - chr5_2:56647587-56647606 Msa0777570:intron 55.0%
!!! GGAGCATTTTGGGGCAGTTG+TGG - chr5_2:56647861-56647880 Msa0777570:intron 55.0%
!!! GCATTTTGGGGCAGTTGTGG+TGG - chr5_2:56647864-56647883 Msa0777570:intron 55.0%
CCCATGTGGATCCCACACTT+TGG - chr5_2:56648230-56648249 Msa0777570:intron 55.0%
GTGGGTCTCACCACTCTATG+TGG + chr5_2:56648265-56648284 None:intergenic 55.0%
CAGTCCACCGTGTTCTTGCA+TGG - chr5_2:56649151-56649170 Msa0777570:intron 55.0%
CACCGTGTTCTTGCATGGAC+CGG - chr5_2:56649156-56649175 Msa0777570:intron 55.0%
CACCGGTCCATGCAAGAACA+CGG + chr5_2:56649161-56649180 None:intergenic 55.0%
GGGAATAGCCGAGCATTAGC+CGG - chr5_2:56649624-56649643 Msa0777570:intron 55.0%
!! GAGGGATTAGTTTCTCGGGG+GGG + chr5_2:56649727-56649746 None:intergenic 55.0%
CAAGTGGATCATCGGGGTTG+GGG + chr5_2:56649790-56649809 None:intergenic 55.0%
TTCTTCCACGCTTCCGACCC+AGG - chr5_2:56645017-56645036 Msa0777570:three_prime_UTR 60.0%
ACAAACCTGGGTCGGAAGCG+TGG + chr5_2:56645025-56645044 None:intergenic 60.0%
CCCCCAACTTCATGCAGTGC+AGG - chr5_2:56645233-56645252 Msa0777570:CDS 60.0%
CGGTCTTGCCACTACACCGT+TGG - chr5_2:56646347-56646366 Msa0777570:intron 60.0%
GGTTTCCCCCCATCCCTATG+TGG - chr5_2:56647937-56647956 Msa0777570:intron 60.0%
CGGTCCATGCAAGAACACGG+TGG + chr5_2:56649158-56649177 None:intergenic 60.0%
ATGAAGCCACAGCTCGCAGC+TGG - chr5_2:56649852-56649871 Msa0777570:intron 60.0%
CTGTGTCCAGCTGCGAGCTG+TGG + chr5_2:56649861-56649880 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 56644864 56650249 56644864 ID=Msa0777570;Name=Msa0777570
chr5_2 mRNA 56644864 56650249 56644864 ID=Msa0777570-mRNA-1;Parent=Msa0777570;Name=Msa0777570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=186|1|1|1|0.75|0.6|5|351|148
chr5_2 exon 56644864 56645358 56644864 ID=Msa0777570-mRNA-1:exon:16763;Parent=Msa0777570-mRNA-1
chr5_2 exon 56645623 56645727 56645623 ID=Msa0777570-mRNA-1:exon:16762;Parent=Msa0777570-mRNA-1
chr5_2 exon 56648041 56648168 56648041 ID=Msa0777570-mRNA-1:exon:16761;Parent=Msa0777570-mRNA-1
chr5_2 exon 56649859 56649939 56649859 ID=Msa0777570-mRNA-1:exon:16760;Parent=Msa0777570-mRNA-1
chr5_2 exon 56650075 56650249 56650075 ID=Msa0777570-mRNA-1:exon:16759;Parent=Msa0777570-mRNA-1
chr5_2 five_prime_UTR 56650075 56650249 56650075 ID=Msa0777570-mRNA-1:five_prime_utr;Parent=Msa0777570-mRNA-1
chr5_2 five_prime_UTR 56649929 56649939 56649929 ID=Msa0777570-mRNA-1:five_prime_utr;Parent=Msa0777570-mRNA-1
chr5_2 CDS 56649859 56649928 56649859 ID=Msa0777570-mRNA-1:cds;Parent=Msa0777570-mRNA-1
chr5_2 CDS 56648041 56648168 56648041 ID=Msa0777570-mRNA-1:cds;Parent=Msa0777570-mRNA-1
chr5_2 CDS 56645623 56645727 56645623 ID=Msa0777570-mRNA-1:cds;Parent=Msa0777570-mRNA-1
chr5_2 CDS 56645215 56645358 56645215 ID=Msa0777570-mRNA-1:cds;Parent=Msa0777570-mRNA-1
chr5_2 three_prime_UTR 56644864 56645214 56644864 ID=Msa0777570-mRNA-1:three_prime_utr;Parent=Msa0777570-mRNA-1
Gene Sequence

>Msa0777570

ATGGCGTCGAAACGAATCTTGAAGGAGCTCAAGGATTTGCAGAAGGACCCCCCAACTTCATGCAGTGCAGGTCCTGTGGCTGAGGACATGTTCCACTGGCAAGCCACAATCATGGGACCGGCTGATAGCCCATATACTGGTGGTGTGTTCCTGGTTTCAATTCATTTTCCTCCTGACTATCCCTTCAAGCCACCAAAGGTTGCTTTTAGGACCAAGGTGTTCCACCCAAACATCAACAGTAATGGCAGTATATGTCTCGACATTCTGAAGGAACAGTGGAGCCCAGCATTAACCATTTCCAAGGTCCTTTTGTCAATTTGCTCGTTGTTGACGGACCCCAACCCCGATGATCCACTTGTTCCTGAAATTGCACACATGTACAAGACCGACAGGGCCAAATATGAAGCCACAGCTCGCAGCTGGACACAGAAGTATGCCATGGGATGA
Protein sequence

>Msa0777570

MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYTGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG*