AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336420 MtrunA17_Chr2g0286231 100.000 149 0 0 1 149 412 560 2.70e-102 303
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336420 AT2G39090.1 82.550 149 26 0 1 149 410 558 1.36e-84 258
Msa0336420 AT2G39090.2 87.255 102 13 0 1 102 410 511 1.24e-56 184

Find 66 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTCCCACCAGAATTAC+TGG 0.231176 2_4:+55818296 None:intergenic
CGCATTATCAGGCTGCATTA+AGG 0.287884 2_4:-55817975 Msa0336420:intron
TCATTGTCTTCATCTTCTTC+AGG 0.314723 2_4:+55817375 None:intergenic
GGAAGCTTTGTCGCATTATC+AGG 0.318728 2_4:-55817986 Msa0336420:CDS
CCTTGGTGCTGCACTAGCTT+TGG 0.339345 2_4:-55818139 Msa0336420:CDS
ATATATTGAGTGAGTGGTTT+GGG 0.353572 2_4:-55817073 Msa0336420:three_prime_UTR
TCATCTTCTTCAGGTGCATC+AGG 0.357087 2_4:+55817384 None:intergenic
CCAGAATGAAGCAGCAAAAC+GGG 0.358228 2_4:-55817636 Msa0336420:CDS
GATGTGCATGCCAGTAATTC+TGG 0.359532 2_4:-55818306 Msa0336420:CDS
CATATATTGAGTGAGTGGTT+TGG 0.390424 2_4:-55817074 Msa0336420:three_prime_UTR
GCAAAGGCTTTAAAATTAGT+AGG 0.411992 2_4:-55818330 Msa0336420:CDS
GATATATGTTAACCAATGTT+TGG 0.427495 2_4:-55816926 Msa0336420:three_prime_UTR
CATGCATTCCATGTTTAATA+CGG 0.430450 2_4:+55817116 None:intergenic
TTATCGCCAACTGTTGCATC+TGG 0.434614 2_4:-55817142 Msa0336420:three_prime_UTR
TTTAAAGCCTTTGCAGATTG+AGG 0.438951 2_4:+55818339 None:intergenic
TAAGATTATTTCTGTGCTCC+TGG 0.443224 2_4:-55816963 Msa0336420:three_prime_UTR
CATGTTATCGAGGGTCGAAA+TGG 0.443860 2_4:-55818108 Msa0336420:CDS
AGCTTCCGACAGCATATTTG+TGG 0.448816 2_4:+55818002 None:intergenic
CCCAGAATGAAGCAGCAAAA+CGG 0.458552 2_4:-55817637 Msa0336420:CDS
CTATGAGTCTGCGTTAAGGC+TGG 0.470224 2_4:-55818172 Msa0336420:CDS
AACAATATATACTATTTCCA+AGG 0.500175 2_4:+55817276 None:intergenic
AGGCTGGAACCTGGTTACCT+TGG 0.502118 2_4:-55818156 Msa0336420:CDS
GCGTTTAGAGAAGCAAATGA+AGG 0.504166 2_4:-55817606 Msa0336420:intron
GTGAGTGGTTTGGGTTGGAC+TGG 0.504570 2_4:-55817064 Msa0336420:three_prime_UTR
ATTGAGTGAGTGGTTTGGGT+TGG 0.505428 2_4:-55817069 Msa0336420:three_prime_UTR
CTCATTTCACCCTACTGCTA+AGG 0.512262 2_4:+55817244 None:intergenic
TTTGAGATGGCCTTAGCAGT+AGG 0.513918 2_4:-55817254 Msa0336420:three_prime_UTR
TTGAGCGATATCTTAAAGAC+TGG 0.515465 2_4:-55818068 Msa0336420:CDS
TTGAGATGGCCTTAGCAGTA+GGG 0.515605 2_4:-55817253 Msa0336420:three_prime_UTR
CGTATTAAACATGGAATGCA+TGG 0.519504 2_4:-55817115 Msa0336420:three_prime_UTR
AGTTCTATGAGTCTGCGTTA+AGG 0.520034 2_4:-55818176 Msa0336420:CDS
CATTTCGACCCTCGATAACA+TGG 0.525276 2_4:+55818109 None:intergenic
GACTGAACTTCTATGAGTAT+TGG 0.530270 2_4:-55817322 Msa0336420:exon
AACGAAGGGAAAAGTACCCT+TGG 0.534134 2_4:-55817293 Msa0336420:three_prime_UTR
ATTCTCATATATTGAGTGAG+TGG 0.534861 2_4:-55817079 Msa0336420:three_prime_UTR
ACCTTGGTGGCCTATGTGGA+AGG 0.536008 2_4:-55817217 Msa0336420:three_prime_UTR
CTAAACTTGTGACCAAACAT+TGG 0.539438 2_4:+55816914 None:intergenic
TAATTCTGGTGGGAGAGAAA+AGG 0.541741 2_4:-55818292 Msa0336420:intron
GGCTGAGCTCCATGTTATCG+AGG 0.543303 2_4:-55818118 Msa0336420:CDS
ATGTATTATTAAGCTCAAGC+TGG 0.554436 2_4:-55817006 Msa0336420:three_prime_UTR
TGCTGCCACAAATATGCTGT+CGG 0.561575 2_4:-55818007 Msa0336420:CDS
AGTGCAGCACCAAGGTAACC+AGG 0.566814 2_4:+55818147 None:intergenic
AATTACCTTGGTGGCCTATG+TGG 0.570053 2_4:-55817221 Msa0336420:three_prime_UTR
GCTGAGCTCCATGTTATCGA+GGG 0.579949 2_4:-55818117 Msa0336420:CDS
AGTATTGGTATCCAAACGAA+GGG 0.582241 2_4:-55817307 Msa0336420:three_prime_UTR
CAGAATGTTGAAGTTCAAGC+TGG 0.583895 2_4:-55817040 Msa0336420:three_prime_UTR
GAAGACAATGATGTTGAAGA+TGG 0.585143 2_4:-55817363 Msa0336420:CDS
AGCAATGCCTCAATCTGCAA+AGG 0.593004 2_4:-55818346 None:intergenic
TCTGCGTTAAGGCTGGAACC+TGG 0.600767 2_4:-55818165 Msa0336420:CDS
TGAAATGAGAATTACCTTGG+TGG 0.614718 2_4:-55817230 Msa0336420:three_prime_UTR
AATGATGTTGAAGATGGTGA+TGG 0.615312 2_4:-55817357 Msa0336420:CDS
TGAGCGATATCTTAAAGACT+GGG 0.616659 2_4:-55818067 Msa0336420:CDS
ACCTTCCACATAGGCCACCA+AGG 0.621027 2_4:+55817216 None:intergenic
ACAATATATACTATTTCCAA+GGG 0.625101 2_4:+55817277 None:intergenic
GAGTATTGGTATCCAAACGA+AGG 0.627840 2_4:-55817308 Msa0336420:three_prime_UTR
GGGTGAAATGAGAATTACCT+TGG 0.633665 2_4:-55817233 Msa0336420:three_prime_UTR
ATATCGCTCAAGCAGAGACA+CGG 0.641164 2_4:+55818080 None:intergenic
TATTATTAAGCTCAAGCTGG+AGG 0.641464 2_4:-55817003 Msa0336420:three_prime_UTR
TCTGGTGACCGTATTAAACA+TGG 0.642994 2_4:-55817124 Msa0336420:three_prime_UTR
CGGTCACCAGATGCAACAGT+TGG 0.644603 2_4:+55817136 None:intergenic
TATCTTACAAATATATAACC+AGG 0.650026 2_4:+55816945 None:intergenic
ACAGTGAAAACCTTCCACAT+AGG 0.667609 2_4:+55817207 None:intergenic
CAGAATGAAGCAGCAAAACG+GGG 0.672162 2_4:-55817635 Msa0336420:CDS
GTGCATGCCAGTAATTCTGG+TGG 0.684548 2_4:-55818303 Msa0336420:CDS
TGCATGCCAGTAATTCTGGT+GGG 0.685043 2_4:-55818302 Msa0336420:CDS
CCAAAGCTAGTGCAGCACCA+AGG 0.694097 2_4:+55818139 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATATAAATATCATAGCAA+CGG - chr2_4:55817314-55817333 Msa0336420:exon 20.0%
!! ATAAAAACTGTGCAAATAAT+GGG + chr2_4:55817621-55817640 None:intergenic 20.0%
!! TATAAAAACTGTGCAAATAA+TGG + chr2_4:55817622-55817641 None:intergenic 20.0%
!!! ATTTTGATTGACAATATTAG+AGG - chr2_4:55817677-55817696 Msa0336420:intron 20.0%
!! ACAATATATACTATTTCCAA+GGG + chr2_4:55817864-55817883 None:intergenic 20.0%
!! AACAATATATACTATTTCCA+AGG + chr2_4:55817865-55817884 None:intergenic 20.0%
!!! TAGTATATATTGTTTTGAGA+TGG - chr2_4:55817871-55817890 Msa0336420:intron 20.0%
!! TATCTTACAAATATATAACC+AGG + chr2_4:55818196-55818215 None:intergenic 20.0%
!! AGATATAAATATCATAGCAA+CGG - chr2_4:55817314-55817333 Msa0336420:exon 20.0%
!! ATAAAAACTGTGCAAATAAT+GGG + chr2_4:55817621-55817640 None:intergenic 20.0%
!! TATAAAAACTGTGCAAATAA+TGG + chr2_4:55817622-55817641 None:intergenic 20.0%
!!! ATTTTGATTGACAATATTAG+AGG - chr2_4:55817677-55817696 Msa0336420:intron 20.0%
!! ACAATATATACTATTTCCAA+GGG + chr2_4:55817864-55817883 None:intergenic 20.0%
!! AACAATATATACTATTTCCA+AGG + chr2_4:55817865-55817884 None:intergenic 20.0%
!!! TAGTATATATTGTTTTGAGA+TGG - chr2_4:55817871-55817890 Msa0336420:intron 20.0%
!! TATCTTACAAATATATAACC+AGG + chr2_4:55818196-55818215 None:intergenic 20.0%
!!! TTTTATGACAAAGTATCTTC+AGG - chr2_4:55816882-55816901 Msa0336420:three_prime_UTR 25.0%
! ACTTAATGCATTCATCATAT+AGG - chr2_4:55816933-55816952 Msa0336420:three_prime_UTR 25.0%
!! ATTTTATAACTCCACCTTTT+GGG + chr2_4:55817246-55817265 None:intergenic 25.0%
!! TATTTTATAACTCCACCTTT+TGG + chr2_4:55817247-55817266 None:intergenic 25.0%
!! GATTTTGCAATTTTATATCC+CGG - chr2_4:55817291-55817310 Msa0336420:three_prime_UTR 25.0%
! TGCTATGATATTTATATCTC+CGG + chr2_4:55817313-55817332 None:intergenic 25.0%
! TTGACATTTATTATGATGAC+AGG - chr2_4:55817471-55817490 Msa0336420:intron 25.0%
! TATATGAAAGAATAGATGCA+CGG - chr2_4:55817638-55817657 Msa0336420:CDS 25.0%
! GATATATGTTAACCAATGTT+TGG - chr2_4:55818212-55818231 Msa0336420:intron 25.0%
!!! TTTTATGACAAAGTATCTTC+AGG - chr2_4:55816882-55816901 Msa0336420:three_prime_UTR 25.0%
! ACTTAATGCATTCATCATAT+AGG - chr2_4:55816933-55816952 Msa0336420:three_prime_UTR 25.0%
!! ATTTTATAACTCCACCTTTT+GGG + chr2_4:55817246-55817265 None:intergenic 25.0%
!! TATTTTATAACTCCACCTTT+TGG + chr2_4:55817247-55817266 None:intergenic 25.0%
!! GATTTTGCAATTTTATATCC+CGG - chr2_4:55817291-55817310 Msa0336420:three_prime_UTR 25.0%
! TGCTATGATATTTATATCTC+CGG + chr2_4:55817313-55817332 None:intergenic 25.0%
! TTGACATTTATTATGATGAC+AGG - chr2_4:55817471-55817490 Msa0336420:intron 25.0%
! TATATGAAAGAATAGATGCA+CGG - chr2_4:55817638-55817657 Msa0336420:CDS 25.0%
! GATATATGTTAACCAATGTT+TGG - chr2_4:55818212-55818231 Msa0336420:intron 25.0%
!! GCAAAGGCTTTAAAATTAGT+AGG - chr2_4:55816808-55816827 Msa0336420:three_prime_UTR 30.0%
TCATTCTGTAAACATCTGTT+GGG - chr2_4:55817195-55817214 Msa0336420:three_prime_UTR 30.0%
! TTTTATAACTCCACCTTTTG+GGG + chr2_4:55817245-55817264 None:intergenic 30.0%
TTAATTCCGCATCACTTATA+TGG - chr2_4:55817269-55817288 Msa0336420:three_prime_UTR 30.0%
CAAAATCCATATAAGTGATG+CGG + chr2_4:55817278-55817297 None:intergenic 30.0%
GCTATGATATTTATATCTCC+GGG + chr2_4:55817312-55817331 None:intergenic 30.0%
TATAAATATCATAGCAACGG+TGG - chr2_4:55817317-55817336 Msa0336420:exon 30.0%
ATAAAAGGATTGAGAGAAAG+GGG + chr2_4:55817357-55817376 None:intergenic 30.0%
CATAAAAGGATTGAGAGAAA+GGG + chr2_4:55817358-55817377 None:intergenic 30.0%
ATGAAAAATCACAAACACAG+AGG + chr2_4:55817447-55817466 None:intergenic 30.0%
! TTGTGATTTTGTATCTGTTC+AGG - chr2_4:55817723-55817742 Msa0336420:intron 30.0%
! TGTGATTTTGTATCTGTTCA+GGG - chr2_4:55817724-55817743 Msa0336420:intron 30.0%
AGAGTTCACATCTAAAAACA+AGG - chr2_4:55817966-55817985 Msa0336420:intron 30.0%
CATGCATTCCATGTTTAATA+CGG + chr2_4:55818025-55818044 None:intergenic 30.0%
ATTCTCATATATTGAGTGAG+TGG - chr2_4:55818059-55818078 Msa0336420:CDS 30.0%
ATATATTGAGTGAGTGGTTT+GGG - chr2_4:55818065-55818084 Msa0336420:CDS 30.0%
ATGTATTATTAAGCTCAAGC+TGG - chr2_4:55818132-55818151 Msa0336420:CDS 30.0%
!! GCAAAGGCTTTAAAATTAGT+AGG - chr2_4:55816808-55816827 Msa0336420:three_prime_UTR 30.0%
TCATTCTGTAAACATCTGTT+GGG - chr2_4:55817195-55817214 Msa0336420:three_prime_UTR 30.0%
! TTTTATAACTCCACCTTTTG+GGG + chr2_4:55817245-55817264 None:intergenic 30.0%
TTAATTCCGCATCACTTATA+TGG - chr2_4:55817269-55817288 Msa0336420:three_prime_UTR 30.0%
CAAAATCCATATAAGTGATG+CGG + chr2_4:55817278-55817297 None:intergenic 30.0%
GCTATGATATTTATATCTCC+GGG + chr2_4:55817312-55817331 None:intergenic 30.0%
TATAAATATCATAGCAACGG+TGG - chr2_4:55817317-55817336 Msa0336420:exon 30.0%
ATAAAAGGATTGAGAGAAAG+GGG + chr2_4:55817357-55817376 None:intergenic 30.0%
CATAAAAGGATTGAGAGAAA+GGG + chr2_4:55817358-55817377 None:intergenic 30.0%
ATGAAAAATCACAAACACAG+AGG + chr2_4:55817447-55817466 None:intergenic 30.0%
! TTGTGATTTTGTATCTGTTC+AGG - chr2_4:55817723-55817742 Msa0336420:intron 30.0%
! TGTGATTTTGTATCTGTTCA+GGG - chr2_4:55817724-55817743 Msa0336420:intron 30.0%
AGAGTTCACATCTAAAAACA+AGG - chr2_4:55817966-55817985 Msa0336420:intron 30.0%
CATGCATTCCATGTTTAATA+CGG + chr2_4:55818025-55818044 None:intergenic 30.0%
ATTCTCATATATTGAGTGAG+TGG - chr2_4:55818059-55818078 Msa0336420:CDS 30.0%
ATATATTGAGTGAGTGGTTT+GGG - chr2_4:55818065-55818084 Msa0336420:CDS 30.0%
ATGTATTATTAAGCTCAAGC+TGG - chr2_4:55818132-55818151 Msa0336420:CDS 30.0%
! TTTAAAGCCTTTGCAGATTG+AGG + chr2_4:55816802-55816821 None:intergenic 35.0%
TTGAGCGATATCTTAAAGAC+TGG - chr2_4:55817070-55817089 Msa0336420:three_prime_UTR 35.0%
TGAGCGATATCTTAAAGACT+GGG - chr2_4:55817071-55817090 Msa0336420:three_prime_UTR 35.0%
CTCATTCTGTAAACATCTGT+TGG - chr2_4:55817194-55817213 Msa0336420:three_prime_UTR 35.0%
CATTCTGTAAACATCTGTTG+GGG - chr2_4:55817196-55817215 Msa0336420:three_prime_UTR 35.0%
! TTTATAACTCCACCTTTTGG+GGG + chr2_4:55817244-55817263 None:intergenic 35.0%
GCATAAAAGGATTGAGAGAA+AGG + chr2_4:55817359-55817378 None:intergenic 35.0%
GAGGAAGTTTACTGCATAAA+AGG + chr2_4:55817372-55817391 None:intergenic 35.0%
AAAGAATAGATGCACGGTTT+AGG - chr2_4:55817644-55817663 Msa0336420:CDS 35.0%
TCATTGTCTTCATCTTCTTC+AGG + chr2_4:55817766-55817785 None:intergenic 35.0%
GAAGACAATGATGTTGAAGA+TGG - chr2_4:55817775-55817794 Msa0336420:intron 35.0%
AATGATGTTGAAGATGGTGA+TGG - chr2_4:55817781-55817800 Msa0336420:intron 35.0%
GACTGAACTTCTATGAGTAT+TGG - chr2_4:55817816-55817835 Msa0336420:intron 35.0%
!! AGTATTGGTATCCAAACGAA+GGG - chr2_4:55817831-55817850 Msa0336420:intron 35.0%
TGAAATGAGAATTACCTTGG+TGG - chr2_4:55817908-55817927 Msa0336420:intron 35.0%
CGTATTAAACATGGAATGCA+TGG - chr2_4:55818023-55818042 Msa0336420:CDS 35.0%
CATATATTGAGTGAGTGGTT+TGG - chr2_4:55818064-55818083 Msa0336420:CDS 35.0%
TATTATTAAGCTCAAGCTGG+AGG - chr2_4:55818135-55818154 Msa0336420:CDS 35.0%
!! TAAGATTATTTCTGTGCTCC+TGG - chr2_4:55818175-55818194 Msa0336420:CDS 35.0%
CTAAACTTGTGACCAAACAT+TGG + chr2_4:55818227-55818246 None:intergenic 35.0%
! TTTAAAGCCTTTGCAGATTG+AGG + chr2_4:55816802-55816821 None:intergenic 35.0%
TTGAGCGATATCTTAAAGAC+TGG - chr2_4:55817070-55817089 Msa0336420:three_prime_UTR 35.0%
TGAGCGATATCTTAAAGACT+GGG - chr2_4:55817071-55817090 Msa0336420:three_prime_UTR 35.0%
CTCATTCTGTAAACATCTGT+TGG - chr2_4:55817194-55817213 Msa0336420:three_prime_UTR 35.0%
CATTCTGTAAACATCTGTTG+GGG - chr2_4:55817196-55817215 Msa0336420:three_prime_UTR 35.0%
! TTTATAACTCCACCTTTTGG+GGG + chr2_4:55817244-55817263 None:intergenic 35.0%
GCATAAAAGGATTGAGAGAA+AGG + chr2_4:55817359-55817378 None:intergenic 35.0%
GAGGAAGTTTACTGCATAAA+AGG + chr2_4:55817372-55817391 None:intergenic 35.0%
AAAGAATAGATGCACGGTTT+AGG - chr2_4:55817644-55817663 Msa0336420:CDS 35.0%
TCATTGTCTTCATCTTCTTC+AGG + chr2_4:55817766-55817785 None:intergenic 35.0%
GAAGACAATGATGTTGAAGA+TGG - chr2_4:55817775-55817794 Msa0336420:intron 35.0%
AATGATGTTGAAGATGGTGA+TGG - chr2_4:55817781-55817800 Msa0336420:intron 35.0%
GACTGAACTTCTATGAGTAT+TGG - chr2_4:55817816-55817835 Msa0336420:intron 35.0%
!! AGTATTGGTATCCAAACGAA+GGG - chr2_4:55817831-55817850 Msa0336420:intron 35.0%
TGAAATGAGAATTACCTTGG+TGG - chr2_4:55817908-55817927 Msa0336420:intron 35.0%
CGTATTAAACATGGAATGCA+TGG - chr2_4:55818023-55818042 Msa0336420:CDS 35.0%
CATATATTGAGTGAGTGGTT+TGG - chr2_4:55818064-55818083 Msa0336420:CDS 35.0%
TATTATTAAGCTCAAGCTGG+AGG - chr2_4:55818135-55818154 Msa0336420:CDS 35.0%
!! TAAGATTATTTCTGTGCTCC+TGG - chr2_4:55818175-55818194 Msa0336420:CDS 35.0%
CTAAACTTGTGACCAAACAT+TGG + chr2_4:55818227-55818246 None:intergenic 35.0%
TAATTCTGGTGGGAGAGAAA+AGG - chr2_4:55816846-55816865 Msa0336420:three_prime_UTR 40.0%
AGTTCTATGAGTCTGCGTTA+AGG - chr2_4:55816962-55816981 Msa0336420:three_prime_UTR 40.0%
! TTATAACTCCACCTTTTGGG+GGG + chr2_4:55817243-55817262 None:intergenic 40.0%
! TCGATCGATTCTTAAATGCG+AGG + chr2_4:55817391-55817410 None:intergenic 40.0%
! AAACACAGAGGCATATCACA+TGG + chr2_4:55817435-55817454 None:intergenic 40.0%
GCGTTTAGAGAAGCAAATGA+AGG - chr2_4:55817532-55817551 Msa0336420:intron 40.0%
!! GAGTATTGGTATCCAAACGA+AGG - chr2_4:55817830-55817849 Msa0336420:intron 40.0%
GGGTGAAATGAGAATTACCT+TGG - chr2_4:55817905-55817924 Msa0336420:intron 40.0%
ACAGTGAAAACCTTCCACAT+AGG + chr2_4:55817934-55817953 None:intergenic 40.0%
TCTGGTGACCGTATTAAACA+TGG - chr2_4:55818014-55818033 Msa0336420:CDS 40.0%
CAGAATGTTGAAGTTCAAGC+TGG - chr2_4:55818098-55818117 Msa0336420:CDS 40.0%
TAATTCTGGTGGGAGAGAAA+AGG - chr2_4:55816846-55816865 Msa0336420:three_prime_UTR 40.0%
AGTTCTATGAGTCTGCGTTA+AGG - chr2_4:55816962-55816981 Msa0336420:three_prime_UTR 40.0%
! TTATAACTCCACCTTTTGGG+GGG + chr2_4:55817243-55817262 None:intergenic 40.0%
! TCGATCGATTCTTAAATGCG+AGG + chr2_4:55817391-55817410 None:intergenic 40.0%
! AAACACAGAGGCATATCACA+TGG + chr2_4:55817435-55817454 None:intergenic 40.0%
GCGTTTAGAGAAGCAAATGA+AGG - chr2_4:55817532-55817551 Msa0336420:intron 40.0%
!! GAGTATTGGTATCCAAACGA+AGG - chr2_4:55817830-55817849 Msa0336420:intron 40.0%
GGGTGAAATGAGAATTACCT+TGG - chr2_4:55817905-55817924 Msa0336420:intron 40.0%
ACAGTGAAAACCTTCCACAT+AGG + chr2_4:55817934-55817953 None:intergenic 40.0%
TCTGGTGACCGTATTAAACA+TGG - chr2_4:55818014-55818033 Msa0336420:CDS 40.0%
CAGAATGTTGAAGTTCAAGC+TGG - chr2_4:55818098-55818117 Msa0336420:CDS 40.0%
GATGTGCATGCCAGTAATTC+TGG - chr2_4:55816832-55816851 Msa0336420:three_prime_UTR 45.0%
TGCATGCCAGTAATTCTGGT+GGG - chr2_4:55816836-55816855 Msa0336420:three_prime_UTR 45.0%
TTCTCTCCCACCAGAATTAC+TGG + chr2_4:55816845-55816864 None:intergenic 45.0%
CATTTCGACCCTCGATAACA+TGG + chr2_4:55817032-55817051 None:intergenic 45.0%
CATGTTATCGAGGGTCGAAA+TGG - chr2_4:55817030-55817049 Msa0336420:three_prime_UTR 45.0%
ATATCGCTCAAGCAGAGACA+CGG + chr2_4:55817061-55817080 None:intergenic 45.0%
TGCTGCCACAAATATGCTGT+CGG - chr2_4:55817131-55817150 Msa0336420:three_prime_UTR 45.0%
AGCTTCCGACAGCATATTTG+TGG + chr2_4:55817139-55817158 None:intergenic 45.0%
! GGAAGCTTTGTCGCATTATC+AGG - chr2_4:55817152-55817171 Msa0336420:three_prime_UTR 45.0%
CGCATTATCAGGCTGCATTA+AGG - chr2_4:55817163-55817182 Msa0336420:three_prime_UTR 45.0%
!! TATAACTCCACCTTTTGGGG+GGG + chr2_4:55817242-55817261 None:intergenic 45.0%
TGGATATCCCCTGACTACAA+GGG + chr2_4:55817415-55817434 None:intergenic 45.0%
ATGGATATCCCCTGACTACA+AGG + chr2_4:55817416-55817435 None:intergenic 45.0%
!! GTTTTGCTGCTTCATTCTGG+GGG + chr2_4:55817502-55817521 None:intergenic 45.0%
!! CGTTTTGCTGCTTCATTCTG+GGG + chr2_4:55817503-55817522 None:intergenic 45.0%
!! CCGTTTTGCTGCTTCATTCT+GGG + chr2_4:55817504-55817523 None:intergenic 45.0%
CCCAGAATGAAGCAGCAAAA+CGG - chr2_4:55817501-55817520 Msa0336420:intron 45.0%
CCAGAATGAAGCAGCAAAAC+GGG - chr2_4:55817502-55817521 Msa0336420:intron 45.0%
CAGAATGAAGCAGCAAAACG+GGG - chr2_4:55817503-55817522 Msa0336420:intron 45.0%
TCATCTTCTTCAGGTGCATC+AGG + chr2_4:55817757-55817776 None:intergenic 45.0%
!! AGGGTACTTTTCCCTTCGTT+TGG + chr2_4:55817845-55817864 None:intergenic 45.0%
!! AACGAAGGGAAAAGTACCCT+TGG - chr2_4:55817845-55817864 Msa0336420:intron 45.0%
! TTTGAGATGGCCTTAGCAGT+AGG - chr2_4:55817884-55817903 Msa0336420:intron 45.0%
! TTGAGATGGCCTTAGCAGTA+GGG - chr2_4:55817885-55817904 Msa0336420:intron 45.0%
CTCATTTCACCCTACTGCTA+AGG + chr2_4:55817897-55817916 None:intergenic 45.0%
! AATTACCTTGGTGGCCTATG+TGG - chr2_4:55817917-55817936 Msa0336420:intron 45.0%
TTATCGCCAACTGTTGCATC+TGG - chr2_4:55817996-55818015 Msa0336420:CDS 45.0%
! ATTGAGTGAGTGGTTTGGGT+TGG - chr2_4:55818069-55818088 Msa0336420:CDS 45.0%
GATGTGCATGCCAGTAATTC+TGG - chr2_4:55816832-55816851 Msa0336420:three_prime_UTR 45.0%
TGCATGCCAGTAATTCTGGT+GGG - chr2_4:55816836-55816855 Msa0336420:three_prime_UTR 45.0%
TTCTCTCCCACCAGAATTAC+TGG + chr2_4:55816845-55816864 None:intergenic 45.0%
CATTTCGACCCTCGATAACA+TGG + chr2_4:55817032-55817051 None:intergenic 45.0%
CATGTTATCGAGGGTCGAAA+TGG - chr2_4:55817030-55817049 Msa0336420:three_prime_UTR 45.0%
ATATCGCTCAAGCAGAGACA+CGG + chr2_4:55817061-55817080 None:intergenic 45.0%
TGCTGCCACAAATATGCTGT+CGG - chr2_4:55817131-55817150 Msa0336420:three_prime_UTR 45.0%
AGCTTCCGACAGCATATTTG+TGG + chr2_4:55817139-55817158 None:intergenic 45.0%
! GGAAGCTTTGTCGCATTATC+AGG - chr2_4:55817152-55817171 Msa0336420:three_prime_UTR 45.0%
CGCATTATCAGGCTGCATTA+AGG - chr2_4:55817163-55817182 Msa0336420:three_prime_UTR 45.0%
!! TATAACTCCACCTTTTGGGG+GGG + chr2_4:55817242-55817261 None:intergenic 45.0%
TGGATATCCCCTGACTACAA+GGG + chr2_4:55817415-55817434 None:intergenic 45.0%
ATGGATATCCCCTGACTACA+AGG + chr2_4:55817416-55817435 None:intergenic 45.0%
!! GTTTTGCTGCTTCATTCTGG+GGG + chr2_4:55817502-55817521 None:intergenic 45.0%
!! CGTTTTGCTGCTTCATTCTG+GGG + chr2_4:55817503-55817522 None:intergenic 45.0%
!! CCGTTTTGCTGCTTCATTCT+GGG + chr2_4:55817504-55817523 None:intergenic 45.0%
CCCAGAATGAAGCAGCAAAA+CGG - chr2_4:55817501-55817520 Msa0336420:intron 45.0%
CCAGAATGAAGCAGCAAAAC+GGG - chr2_4:55817502-55817521 Msa0336420:intron 45.0%
CAGAATGAAGCAGCAAAACG+GGG - chr2_4:55817503-55817522 Msa0336420:intron 45.0%
TCATCTTCTTCAGGTGCATC+AGG + chr2_4:55817757-55817776 None:intergenic 45.0%
!! AGGGTACTTTTCCCTTCGTT+TGG + chr2_4:55817845-55817864 None:intergenic 45.0%
!! AACGAAGGGAAAAGTACCCT+TGG - chr2_4:55817845-55817864 Msa0336420:intron 45.0%
! TTTGAGATGGCCTTAGCAGT+AGG - chr2_4:55817884-55817903 Msa0336420:intron 45.0%
! TTGAGATGGCCTTAGCAGTA+GGG - chr2_4:55817885-55817904 Msa0336420:intron 45.0%
CTCATTTCACCCTACTGCTA+AGG + chr2_4:55817897-55817916 None:intergenic 45.0%
! AATTACCTTGGTGGCCTATG+TGG - chr2_4:55817917-55817936 Msa0336420:intron 45.0%
TTATCGCCAACTGTTGCATC+TGG - chr2_4:55817996-55818015 Msa0336420:CDS 45.0%
! ATTGAGTGAGTGGTTTGGGT+TGG - chr2_4:55818069-55818088 Msa0336420:CDS 45.0%
GTGCATGCCAGTAATTCTGG+TGG - chr2_4:55816835-55816854 Msa0336420:three_prime_UTR 50.0%
CTATGAGTCTGCGTTAAGGC+TGG - chr2_4:55816966-55816985 Msa0336420:three_prime_UTR 50.0%
GCTGAGCTCCATGTTATCGA+GGG - chr2_4:55817021-55817040 Msa0336420:three_prime_UTR 50.0%
!! ATAACTCCACCTTTTGGGGG+GGG + chr2_4:55817241-55817260 None:intergenic 50.0%
TCGATCGAACCCTTGTAGTC+AGG - chr2_4:55817403-55817422 Msa0336420:intron 50.0%
CGATCGAACCCTTGTAGTCA+GGG - chr2_4:55817404-55817423 Msa0336420:intron 50.0%
GATCGAACCCTTGTAGTCAG+GGG - chr2_4:55817405-55817424 Msa0336420:intron 50.0%
!! CCCGTTTTGCTGCTTCATTC+TGG + chr2_4:55817505-55817524 None:intergenic 50.0%
GTGCATGCCAGTAATTCTGG+TGG - chr2_4:55816835-55816854 Msa0336420:three_prime_UTR 50.0%
CTATGAGTCTGCGTTAAGGC+TGG - chr2_4:55816966-55816985 Msa0336420:three_prime_UTR 50.0%
GCTGAGCTCCATGTTATCGA+GGG - chr2_4:55817021-55817040 Msa0336420:three_prime_UTR 50.0%
!! ATAACTCCACCTTTTGGGGG+GGG + chr2_4:55817241-55817260 None:intergenic 50.0%
TCGATCGAACCCTTGTAGTC+AGG - chr2_4:55817403-55817422 Msa0336420:intron 50.0%
CGATCGAACCCTTGTAGTCA+GGG - chr2_4:55817404-55817423 Msa0336420:intron 50.0%
GATCGAACCCTTGTAGTCAG+GGG - chr2_4:55817405-55817424 Msa0336420:intron 50.0%
!! CCCGTTTTGCTGCTTCATTC+TGG + chr2_4:55817505-55817524 None:intergenic 50.0%
TCTGCGTTAAGGCTGGAACC+TGG - chr2_4:55816973-55816992 Msa0336420:three_prime_UTR 55.0%
AGGCTGGAACCTGGTTACCT+TGG - chr2_4:55816982-55817001 Msa0336420:three_prime_UTR 55.0%
AGTGCAGCACCAAGGTAACC+AGG + chr2_4:55816994-55817013 None:intergenic 55.0%
CCAAAGCTAGTGCAGCACCA+AGG + chr2_4:55817002-55817021 None:intergenic 55.0%
!! CCTTGGTGCTGCACTAGCTT+TGG - chr2_4:55816999-55817018 Msa0336420:three_prime_UTR 55.0%
GGCTGAGCTCCATGTTATCG+AGG - chr2_4:55817020-55817039 Msa0336420:three_prime_UTR 55.0%
!! TAACTCCACCTTTTGGGGGG+GGG + chr2_4:55817240-55817259 None:intergenic 55.0%
! ACCTTGGTGGCCTATGTGGA+AGG - chr2_4:55817921-55817940 Msa0336420:intron 55.0%
ACCTTCCACATAGGCCACCA+AGG + chr2_4:55817925-55817944 None:intergenic 55.0%
CGGTCACCAGATGCAACAGT+TGG + chr2_4:55818005-55818024 None:intergenic 55.0%
!! GTGAGTGGTTTGGGTTGGAC+TGG - chr2_4:55818074-55818093 Msa0336420:CDS 55.0%
TCTGCGTTAAGGCTGGAACC+TGG - chr2_4:55816973-55816992 Msa0336420:three_prime_UTR 55.0%
AGGCTGGAACCTGGTTACCT+TGG - chr2_4:55816982-55817001 Msa0336420:three_prime_UTR 55.0%
AGTGCAGCACCAAGGTAACC+AGG + chr2_4:55816994-55817013 None:intergenic 55.0%
CCAAAGCTAGTGCAGCACCA+AGG + chr2_4:55817002-55817021 None:intergenic 55.0%
!! CCTTGGTGCTGCACTAGCTT+TGG - chr2_4:55816999-55817018 Msa0336420:three_prime_UTR 55.0%
GGCTGAGCTCCATGTTATCG+AGG - chr2_4:55817020-55817039 Msa0336420:three_prime_UTR 55.0%
!! TAACTCCACCTTTTGGGGGG+GGG + chr2_4:55817240-55817259 None:intergenic 55.0%
! ACCTTGGTGGCCTATGTGGA+AGG - chr2_4:55817921-55817940 Msa0336420:intron 55.0%
ACCTTCCACATAGGCCACCA+AGG + chr2_4:55817925-55817944 None:intergenic 55.0%
CGGTCACCAGATGCAACAGT+TGG + chr2_4:55818005-55818024 None:intergenic 55.0%
!! GTGAGTGGTTTGGGTTGGAC+TGG - chr2_4:55818074-55818093 Msa0336420:CDS 55.0%
!! AACTCCACCTTTTGGGGGGG+GGG + chr2_4:55817239-55817258 None:intergenic 60.0%
!! AACTCCACCTTTTGGGGGGG+GGG + chr2_4:55817239-55817258 None:intergenic 60.0%
TTTACCCCCCCCCCCCCAAA+AGG - chr2_4:55817229-55817248 Msa0336420:three_prime_UTR 65.0%
!! ACTCCACCTTTTGGGGGGGG+GGG + chr2_4:55817238-55817257 None:intergenic 65.0%
TTTACCCCCCCCCCCCCAAA+AGG - chr2_4:55817229-55817248 Msa0336420:three_prime_UTR 65.0%
!! ACTCCACCTTTTGGGGGGGG+GGG + chr2_4:55817238-55817257 None:intergenic 65.0%
!! TCCACCTTTTGGGGGGGGGG+GGG + chr2_4:55817236-55817255 None:intergenic 70.0%
!! CTCCACCTTTTGGGGGGGGG+GGG + chr2_4:55817237-55817256 None:intergenic 70.0%
!! TCCACCTTTTGGGGGGGGGG+GGG + chr2_4:55817236-55817255 None:intergenic 70.0%
!! CTCCACCTTTTGGGGGGGGG+GGG + chr2_4:55817237-55817256 None:intergenic 70.0%
ACCCCCCCCCCCCCAAAAGG+TGG - chr2_4:55817232-55817251 Msa0336420:three_prime_UTR 75.0%
ACCCCCCCCCCCCCAAAAGG+TGG - chr2_4:55817232-55817251 Msa0336420:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55816796 55818364 55816796 ID=Msa0336420;Name=Msa0336420
chr2_4 mRNA 55816796 55818364 55816796 ID=Msa0336420-mRNA-1;Parent=Msa0336420;Name=Msa0336420-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.66|0.5|0.75|1|1|4|533|149
chr2_4 exon 55816796 55817415 55816796 ID=Msa0336420-mRNA-1:exon:16984;Parent=Msa0336420-mRNA-1
chr2_4 exon 55817607 55817667 55817607 ID=Msa0336420-mRNA-1:exon:16983;Parent=Msa0336420-mRNA-1
chr2_4 exon 55817976 55818205 55817976 ID=Msa0336420-mRNA-1:exon:16982;Parent=Msa0336420-mRNA-1
chr2_4 exon 55818293 55818364 55818293 ID=Msa0336420-mRNA-1:exon:16981;Parent=Msa0336420-mRNA-1
chr2_4 CDS 55818293 55818364 55818293 ID=Msa0336420-mRNA-1:cds;Parent=Msa0336420-mRNA-1
chr2_4 CDS 55817976 55818205 55817976 ID=Msa0336420-mRNA-1:cds;Parent=Msa0336420-mRNA-1
chr2_4 CDS 55817607 55817667 55817607 ID=Msa0336420-mRNA-1:cds;Parent=Msa0336420-mRNA-1
chr2_4 CDS 55817329 55817415 55817329 ID=Msa0336420-mRNA-1:cds;Parent=Msa0336420-mRNA-1
chr2_4 three_prime_UTR 55816796 55817328 55816796 ID=Msa0336420-mRNA-1:three_prime_utr;Parent=Msa0336420-mRNA-1
Gene Sequence

>Msa0336420

ATGCCTCAATCTGCAAAGGCTTTAAAATTAGTAGGTGATGTGCATGCCAGTAATTCTGGTGGGAGAGAAAAGGCGAAAAAGTTCTATGAGTCTGCGTTAAGGCTGGAACCTGGTTACCTTGGTGCTGCACTAGCTTTGGCTGAGCTCCATGTTATCGAGGGTCGAAATGGAGATGCCGTGTCTCTGCTTGAGCGATATCTTAAAGACTGGGCTGATGACTCTCTTCATGTGAAATTAGCACAAGTTTTTGCTGCCACAAATATGCTGTCGGAAGCTTTGTCGCATTATCAGGCTGCATTAAGGTTAAACCCCCAGAATGAAGCAGCAAAACGGGGTTTAGAGCGTTTAGAGAAGCAAATGAAGGGTGTTGATCCTGATGCACCTGAAGAAGATGAAGACAATGATGTTGAAGATGGTGATGGAGATCAAGACGAGACTGAACTTCTATGA

Protein sequence

>Msa0336420

MPQSAKALKLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLSEALSHYQAALRLNPQNEAAKRGLERLEKQMKGVDPDAPEEDEDNDVEDGDGDQDETELL*