AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0942560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0942560 MtrunA17_Chr6g0459071 99.673 306 1 0 1 306 1 306 0.0 630
Msa0942560 MtrunA17_Chr6g0459091 93.160 307 20 1 1 306 1 307 0.0 592
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0942560 AT3G27240.1 87.255 306 39 0 1 306 2 307 0.0 510
Msa0942560 AT5G40810.1 86.275 306 42 0 1 306 2 307 0.0 509
Msa0942560 AT5G40810.2 92.692 260 19 0 47 306 1 260 1.56e-168 468

Find 121 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGGTGTCTCAGGTCTTT+TGG 0.163244 6_3:-17615942 Msa0942560:CDS
TTTATATATGAAACTGTTAT+TGG 0.165636 6_3:-17613000 Msa0942560:three_prime_UTR
TTAAGAGCCCTTGCTTTAAT+TGG 0.175578 6_3:-17615965 Msa0942560:CDS
TTCTGTAACTCCAACGAATT+TGG 0.201397 6_3:+17613362 None:intergenic
ACTTGCAGATGGGATTTAAA+TGG 0.252277 6_3:-17613558 Msa0942560:intron
TTGGGACTTGGGAGGTGTTT+GGG 0.294675 6_3:+17619802 None:intergenic
TGGATATTGCTGTATAATAA+AGG 0.298145 6_3:-17612894 None:intergenic
GAGTGTCAGAATGTTCTTAT+TGG 0.313681 6_3:-17613135 Msa0942560:three_prime_UTR
TAAAATGCATCTCACATATA+TGG 0.326001 6_3:+17613300 None:intergenic
ATTGGGACTTGGGAGGTGTT+TGG 0.328159 6_3:+17619801 None:intergenic
ATGGATATTTGTACTTTCAT+TGG 0.329694 6_3:-17613539 Msa0942560:CDS
AGAATGTTCTTATTGGAAAC+TGG 0.336407 6_3:-17613128 Msa0942560:three_prime_UTR
ATGGCTCCACCAGGGAAATA+AGG 0.352039 6_3:+17613905 None:intergenic
TATGTGTTTGCTCTCCTAAC+TGG 0.353553 6_3:-17614553 Msa0942560:CDS
TTAGACATTTGTTAAGTGAT+TGG 0.359787 6_3:-17613200 Msa0942560:three_prime_UTR
AATTAAAGCAAGGGCTCTTA+AGG 0.362156 6_3:+17615967 None:intergenic
GAATTTGGCATGACGAGAAT+TGG 0.369422 6_3:+17613377 None:intergenic
CTACATACACTTATATAATC+TGG 0.372083 6_3:-17613227 Msa0942560:three_prime_UTR
ACAACATAATAAAATTGAAT+TGG 0.376817 6_3:+17613090 None:intergenic
TAGACATTTGTTAAGTGATT+GGG 0.377081 6_3:-17613199 Msa0942560:three_prime_UTR
AACATCTCACCCTCATCATT+GGG 0.377350 6_3:+17614792 None:intergenic
GTCTCAAAGAAAGACGGTTC+TGG 0.381617 6_3:-17616007 Msa0942560:CDS
TTAATTGGAGCTGGTGTCTC+AGG 0.388344 6_3:-17615950 Msa0942560:CDS
GTGATTGAAGAAGAGTCAAT+TGG 0.393532 6_3:+17619783 None:intergenic
TTCTTACCAGAGAATGAGAT+TGG 0.400483 6_3:+17617978 None:intergenic
CTCTCTGCAGCTTCTCTCTC+CGG 0.401840 6_3:-17619742 Msa0942560:five_prime_UTR
AAAGCGATCACTGAGTTTAC+CGG 0.403522 6_3:+17614761 None:intergenic
AAACATCTCACCCTCATCAT+TGG 0.411590 6_3:+17614791 None:intergenic
TTTGATATCATACCGTGATT+TGG 0.414012 6_3:-17614880 Msa0942560:CDS
CATTACAATCCTTATTTCCC+TGG 0.414300 6_3:-17613914 Msa0942560:CDS
GCAGCTGATTCATTTGCATA+TGG 0.415455 6_3:+17614732 None:intergenic
GCGCCATCATTAAGCATCTT+AGG 0.416554 6_3:+17613875 None:intergenic
TTACGAAATGGAAGCGCGAT+TGG 0.440990 6_3:+17619701 None:intergenic
AGTACCTGAGCTTCGGTAGC+AGG 0.443562 6_3:+17613830 None:intergenic
TACGAAATGGAAGCGCGATT+GGG 0.445237 6_3:+17619702 None:intergenic
AAAGACGGTTCTGGCTCTAC+TGG 0.446521 6_3:-17615998 Msa0942560:CDS
GCCCTTGCTTTAATTGGAGC+TGG 0.448077 6_3:-17615959 Msa0942560:CDS
AAGAAGAGTCAATTGGGACT+TGG 0.450778 6_3:+17619790 None:intergenic
CCGCATACTATCGTCGTCTT+CGG 0.462299 6_3:-17613504 Msa0942560:CDS
GGAAGAGAGAGGATCGAATC+CGG 0.467481 6_3:+17619723 None:intergenic
GAAACTCCAATCTCATTCTC+TGG 0.472075 6_3:-17617984 Msa0942560:intron
TGAGATGGAAGAGCGAAAAC+TGG 0.475157 6_3:-17613655 Msa0942560:intron
GATACTTATACCAACATACT+TGG 0.476088 6_3:+17612965 None:intergenic
TCAGCTGCTAGGTTTGCTAA+TGG 0.483837 6_3:-17614717 Msa0942560:CDS
ATACTTATACCAACATACTT+GGG 0.486119 6_3:+17612966 None:intergenic
TATCAAAGACATGGAATGGC+AGG 0.507429 6_3:+17614896 None:intergenic
TCTCGTCATGCCAAATTCGT+TGG 0.509698 6_3:-17613372 Msa0942560:three_prime_UTR
TCATAAAAGTACCTGAGCTT+CGG 0.512637 6_3:+17613823 None:intergenic
GGCATGGCAATGGCTCCACC+AGG 0.514815 6_3:+17613896 None:intergenic
TTGGTAATAAGACTTAGATC+AGG 0.519781 6_3:+17614681 None:intergenic
ACCGTCTTTCTTTGAGACAA+TGG 0.522311 6_3:+17616012 None:intergenic
AGAAGAAGAGGTAAAGGCTA+TGG 0.524696 6_3:-17614841 Msa0942560:CDS
AGAAGAGTCAATTGGGACTT+GGG 0.525895 6_3:+17619791 None:intergenic
AATACACATGTTTGAGAAGA+GGG 0.527196 6_3:+17613269 None:intergenic
GTACCTGAGCTTCGGTAGCA+GGG 0.529146 6_3:+17613831 None:intergenic
TGATTGAAGAAGAGTCAATT+GGG 0.529880 6_3:+17619784 None:intergenic
GGCTATGGCAGCTGAGATTG+AGG 0.530766 6_3:-17614826 Msa0942560:CDS
ATATAAGTGTATGTAGGTCC+TGG 0.537436 6_3:+17613234 None:intergenic
ATGATATCAAAGACATGGAA+TGG 0.537539 6_3:+17614892 None:intergenic
GCTGAGATTGAGGTGGAAGA+TGG 0.539723 6_3:-17614816 Msa0942560:CDS
GATTCATTTGCATATGGCTG+AGG 0.541130 6_3:+17614738 None:intergenic
TACCCCTGCTACCGAAGCTC+AGG 0.543312 6_3:-17613834 Msa0942560:intron
ATAATAATGTAGATCAGAGA+AGG 0.546231 6_3:-17613941 Msa0942560:intron
ACAGTCTGAACAGAGATGGC+TGG 0.550214 6_3:-17618034 Msa0942560:intron
TTACACAGAAGAAGAGGTAA+AGG 0.552168 6_3:-17614847 Msa0942560:CDS
GAATATACCGAAATACCAGC+AGG 0.552545 6_3:+17614517 None:intergenic
TACAATCCTTATTTCCCTGG+TGG 0.554688 6_3:-17613911 Msa0942560:CDS
AAGCGATCACTGAGTTTACC+GGG 0.554889 6_3:+17614762 None:intergenic
TCGCATCTCCACACTATCCA+TGG 0.559094 6_3:-17615877 Msa0942560:CDS
TGTTCTTAAGTCTCGCAAGT+TGG 0.563450 6_3:-17613476 Msa0942560:CDS
AAGACTTAGATCAGGAGGAT+AGG 0.563590 6_3:+17614689 None:intergenic
TTGGGCAGCAGAACCTGAGA+TGG 0.563754 6_3:-17613670 Msa0942560:CDS
CAGATTATATAAGTGTATGT+AGG 0.566337 6_3:+17613228 None:intergenic
AGGATTCCCTCGTGAGGCCA+TGG 0.566894 6_3:+17615860 None:intergenic
ATCATTAAGCATCTTAGGCA+TGG 0.575465 6_3:+17613880 None:intergenic
ATGCAAATGAATCAGCTGCT+AGG 0.576296 6_3:-17614728 Msa0942560:CDS
GGTGAGATGTTTACACGCCC+CGG 0.579989 6_3:-17614780 Msa0942560:CDS
CACCAGCTCCAATTAAAGCA+AGG 0.593167 6_3:+17615957 None:intergenic
AAATACACATGTTTGAGAAG+AGG 0.595794 6_3:+17613268 None:intergenic
TCAGCTGATGAAGCTGAGCA+TGG 0.598104 6_3:-17615902 Msa0942560:CDS
AATGAAGACCCCAAGTATGT+TGG 0.598413 6_3:-17612975 Msa0942560:three_prime_UTR
GTGTATGTAGGTCCTGGAGG+AGG 0.598701 6_3:+17613240 None:intergenic
TCCATTGTCTCAAAGAAAGA+CGG 0.601122 6_3:-17616013 Msa0942560:CDS
CATACTATCGTCGTCTTCGG+TGG 0.604083 6_3:-17613501 Msa0942560:CDS
GTAATAAGACTTAGATCAGG+AGG 0.606361 6_3:+17614684 None:intergenic
ACCAGCTCCAATTAAAGCAA+GGG 0.607014 6_3:+17615958 None:intergenic
ATCCACAGTCTGAACAGAGA+TGG 0.609865 6_3:-17618038 Msa0942560:intron
TGTTGCTTACACAGAAGAAG+AGG 0.612813 6_3:-17614853 Msa0942560:CDS
TCGTGAGGCCATGGATAGTG+TGG 0.617512 6_3:+17615869 None:intergenic
ATATCATACCGTGATTTGGT+TGG 0.618625 6_3:-17614876 Msa0942560:CDS
AAGCATCTTAGGCATGGCAA+TGG 0.619124 6_3:+17613886 None:intergenic
TACTTATACCAACATACTTG+GGG 0.620209 6_3:+17612967 None:intergenic
GAGACAATGGATGATACAGA+AGG 0.620313 6_3:+17616025 None:intergenic
TACCTGAGCTTCGGTAGCAG+GGG 0.625058 6_3:+17613832 None:intergenic
GGCGCTGTTGAATATGAAGA+TGG 0.625884 6_3:-17613857 Msa0942560:CDS
ACACTATCCATGGCCTCACG+AGG 0.626043 6_3:-17615867 Msa0942560:CDS
ACGGTATGATATCAAAGACA+TGG 0.629932 6_3:+17614887 None:intergenic
ATGCCTAAGATGCTTAATGA+TGG 0.630986 6_3:-17613878 Msa0942560:CDS
GGAAGATGGCCCCAATGATG+AGG 0.644119 6_3:-17614802 Msa0942560:CDS
GCTGCTAGGTTTGCTAATGG+AGG 0.646946 6_3:-17614714 Msa0942560:CDS
AGAGTCAATTGGGACTTGGG+AGG 0.651192 6_3:+17619794 None:intergenic
AATATACCGAAATACCAGCA+GGG 0.651584 6_3:+17614518 None:intergenic
ATATACCGAAATACCAGCAG+GGG 0.655558 6_3:+17614519 None:intergenic
AAGCAACACCAACCAAATCA+CGG 0.657890 6_3:+17614868 None:intergenic
ATGGATAGTGTGGAGATGCG+AGG 0.659382 6_3:+17615879 None:intergenic
GTCTGAACAGAGATGGCTGG+AGG 0.660770 6_3:-17618031 Msa0942560:exon
CACTATCCATGGCCTCACGA+GGG 0.662222 6_3:-17615866 Msa0942560:CDS
GAAGATGGCCCCAATGATGA+GGG 0.664245 6_3:-17614801 Msa0942560:CDS
ACATCTCACCCTCATCATTG+GGG 0.664508 6_3:+17614793 None:intergenic
TAAGTGTATGTAGGTCCTGG+AGG 0.685220 6_3:+17613237 None:intergenic
GTGTATAAACTTGATGACCA+CGG 0.686663 6_3:+17614931 None:intergenic
TATACCGAAATACCAGCAGG+GGG 0.699409 6_3:+17614520 None:intergenic
AAGCGTGATCATATGAACTG+AGG 0.699683 6_3:+17615840 None:intergenic
TATGGCAGCTGAGATTGAGG+TGG 0.700807 6_3:-17614823 Msa0942560:CDS
AAGCGCGATTGGGAAGAGAG+AGG 0.701234 6_3:+17619712 None:intergenic
GCATGGCAATGGCTCCACCA+GGG 0.715609 6_3:+17613897 None:intergenic
GAACTGAGGATTCCCTCGTG+AGG 0.723147 6_3:+17615854 None:intergenic
CCGAAGACGACGATAGTATG+CGG 0.728381 6_3:+17613504 None:intergenic
AGCGATCACTGAGTTTACCG+GGG 0.742025 6_3:+17614763 None:intergenic
TGTATGGACAGGATTCGCCG+TGG 0.758824 6_3:-17614948 Msa0942560:intron
ATACCGAAATACCAGCAGGG+GGG 0.810875 6_3:+17614521 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTTTTTTTTGTAT+TGG - chr6_3:17613368-17613387 Msa0942560:three_prime_UTR 10.0%
!!! AATTGAAATTTTAAAGTTAA+GGG - chr6_3:17613960-17613979 Msa0942560:intron 10.0%
!! GTATTATTTATAGAAATAAA+AGG + chr6_3:17617602-17617621 None:intergenic 10.0%
!! TAATAATTATCTATCAATTT+AGG - chr6_3:17618953-17618972 Msa0942560:intron 10.0%
!!! TTAGTTGTAATTTTATTCAT+TGG - chr6_3:17613273-17613292 Msa0942560:three_prime_UTR 15.0%
!! TAATGAATAAAGTAATAGTT+TGG - chr6_3:17613735-17613754 Msa0942560:intron 15.0%
!!! CTTATTTTTTAGTTTAAGTT+TGG - chr6_3:17613781-17613800 Msa0942560:intron 15.0%
!!! GTAACTTTAAAAGTTTTAAT+CGG - chr6_3:17613811-17613830 Msa0942560:intron 15.0%
!!! TAACTTTAAAAGTTTTAATC+GGG - chr6_3:17613812-17613831 Msa0942560:intron 15.0%
!!! CAATTGAAATTTTAAAGTTA+AGG - chr6_3:17613959-17613978 Msa0942560:intron 15.0%
!!! CTAATTTTATACGTAATTAT+GGG + chr6_3:17615921-17615940 None:intergenic 15.0%
!! AGAATAAATTTAAACTCTAA+AGG + chr6_3:17616239-17616258 None:intergenic 15.0%
!! TTAATACTATAAATAGGAAT+CGG - chr6_3:17616278-17616297 Msa0942560:intron 15.0%
!!! GTGAATATTTTTTATTGTTA+TGG - chr6_3:17616555-17616574 Msa0942560:intron 15.0%
!!! AATATTTTTTATTGTTATGG+TGG - chr6_3:17616558-17616577 Msa0942560:intron 15.0%
!!! GCATTAAATATTTTACAAAT+TGG + chr6_3:17618421-17618440 None:intergenic 15.0%
!! ATTTATAAAAAGATTACTGT+TGG - chr6_3:17619305-17619324 Msa0942560:intron 15.0%
!! ACAACATAATAAAATTGAAT+TGG + chr6_3:17619629-17619648 None:intergenic 15.0%
!! TTTATATATGAAACTGTTAT+TGG - chr6_3:17619716-17619735 Msa0942560:five_prime_UTR 15.0%
!! ACTATGAGAAATGAAAAAAT+TGG + chr6_3:17613098-17613117 None:intergenic 20.0%
!! ATCATTCATATTTCATAAAC+TGG + chr6_3:17613337-17613356 None:intergenic 20.0%
!!! TTTTTTTGGAGTTTAGATTT+TGG - chr6_3:17613442-17613461 Msa0942560:exon 20.0%
!! GCAATCAAATTATAATGTAA+AGG + chr6_3:17613474-17613493 None:intergenic 20.0%
!! CTAACACAATTTAAACAAAA+AGG + chr6_3:17613870-17613889 None:intergenic 20.0%
!! TTGTTTAAATTGTGTTAGAA+AGG - chr6_3:17613872-17613891 Msa0942560:CDS 20.0%
!! TGTTTAAATTGTGTTAGAAA+GGG - chr6_3:17613873-17613892 Msa0942560:CDS 20.0%
!!! TATAAAAGTATCATGAATAG+AGG + chr6_3:17614770-17614789 None:intergenic 20.0%
!!! ATTTTAAATCCCATAAGATA+AGG + chr6_3:17614818-17614837 None:intergenic 20.0%
!! AAGATAAATTCGAAAATGAA+AGG - chr6_3:17615261-17615280 Msa0942560:intron 20.0%
!! ATTAGGTTCTATCATTTAAT+GGG - chr6_3:17615376-17615395 Msa0942560:intron 20.0%
!! GAAAACAAAACAAAACAATT+TGG + chr6_3:17615421-17615440 None:intergenic 20.0%
!!! TCTATTTTATTCTGGTAAAT+AGG - chr6_3:17615805-17615824 Msa0942560:intron 20.0%
!!! TCTTATTTAACTACTTAGTA+TGG - chr6_3:17615879-17615898 Msa0942560:CDS 20.0%
!!! CCTAATTTTATACGTAATTA+TGG + chr6_3:17615922-17615941 None:intergenic 20.0%
!! CCATAATTACGTATAAAATT+AGG - chr6_3:17615919-17615938 Msa0942560:CDS 20.0%
!! ACTGAAAAAAATTAGGTAAT+TGG - chr6_3:17615998-17616017 Msa0942560:CDS 20.0%
!! CTGAAAAAAATTAGGTAATT+GGG - chr6_3:17615999-17616018 Msa0942560:CDS 20.0%
!! GTAAATTAAACATTTACCTA+TGG + chr6_3:17617022-17617041 None:intergenic 20.0%
!! GCTGAAAAAAATTAAAACTA+GGG + chr6_3:17617063-17617082 None:intergenic 20.0%
!! TGGTTAAAAACTTAAAATCT+TGG - chr6_3:17617142-17617161 Msa0942560:intron 20.0%
!! AGAATAAAACAAAGCAATAA+AGG + chr6_3:17617635-17617654 None:intergenic 20.0%
!! AGTTCAGATTAAATATATGA+TGG + chr6_3:17617694-17617713 None:intergenic 20.0%
!!! ATATATTAGCTGATTTTGTA+TGG - chr6_3:17617752-17617771 Msa0942560:intron 20.0%
!! TTCATACTATATAAAACCTA+AGG + chr6_3:17618089-17618108 None:intergenic 20.0%
!!! CTGTATTTAGTCTTAAAAAA+AGG + chr6_3:17618234-17618253 None:intergenic 20.0%
!!! CATTTAAAAGCACAATTTTT+TGG + chr6_3:17618330-17618349 None:intergenic 20.0%
!! TATTGAAAGAAAATCATCTA+TGG + chr6_3:17618470-17618489 None:intergenic 20.0%
!! AAATAAAAAACAAAGCTTGA+AGG + chr6_3:17619289-17619308 None:intergenic 20.0%
!! TTATCTTCAGTAAAGAAAAA+AGG - chr6_3:17619551-17619570 Msa0942560:intron 20.0%
!! TATCTTCAGTAAAGAAAAAA+GGG - chr6_3:17619552-17619571 Msa0942560:intron 20.0%
!! GAATGGAAAATGAATAAAAA+TGG - chr6_3:17619802-17619821 Msa0942560:five_prime_UTR 20.0%
!!! TTTTTTTTGTCTTTCACTGT+AGG + chr6_3:17613701-17613720 None:intergenic 25.0%
!!! AGCTAGTTTTGGTTTTAATA+TGG - chr6_3:17613843-17613862 Msa0942560:CDS 25.0%
! TTCGTGAAAGTTTATCAATT+TGG + chr6_3:17613900-17613919 None:intergenic 25.0%
! TGATAAACTTTCACGAAATA+AGG - chr6_3:17613903-17613922 Msa0942560:CDS 25.0%
! GATAAACTTTCACGAAATAA+GGG - chr6_3:17613904-17613923 Msa0942560:CDS 25.0%
!!! CTAACTTCTTATTTTCAGTT+TGG + chr6_3:17613987-17614006 None:intergenic 25.0%
! TGAAAATAAGAAGTTAGACA+AGG - chr6_3:17613990-17614009 Msa0942560:intron 25.0%
! GAAAATAAGAAGTTAGACAA+GGG - chr6_3:17613991-17614010 Msa0942560:intron 25.0%
!! AAAGACATCTTTTAATGTGT+TGG - chr6_3:17614179-17614198 Msa0942560:intron 25.0%
!! AAGACATCTTTTAATGTGTT+GGG - chr6_3:17614180-17614199 Msa0942560:intron 25.0%
!! TGAAATTTCTTCAGTTTTCA+TGG - chr6_3:17614242-17614261 Msa0942560:intron 25.0%
! TCTCATGTTATAAGATTATG+TGG - chr6_3:17614267-17614286 Msa0942560:intron 25.0%
! GAAAAGATAGACAATACAAA+AGG + chr6_3:17614321-17614340 None:intergenic 25.0%
!!! AAATTTTGACAAGAAGAATG+TGG + chr6_3:17614343-17614362 None:intergenic 25.0%
! ATGTTAAACACTCGATAAAT+AGG + chr6_3:17614395-17614414 None:intergenic 25.0%
! TATTTATCGAGTGTTTAACA+TGG - chr6_3:17614394-17614413 Msa0942560:intron 25.0%
! GTATTTCAAATTTCATATCG+TGG + chr6_3:17614449-17614468 None:intergenic 25.0%
!! TTCTGGCAATTTTCTTTTAT+GGG - chr6_3:17614479-17614498 Msa0942560:intron 25.0%
!!! TTTTATGGGTTCATTTTTCA+TGG - chr6_3:17614493-17614512 Msa0942560:intron 25.0%
! AAAATGAGTTTATGTAGTGA+TGG + chr6_3:17614551-17614570 None:intergenic 25.0%
! TGTTCATACAAAAAAGACTA+AGG + chr6_3:17614658-17614677 None:intergenic 25.0%
!!! GTGTTTTTCAACAATTATTG+AGG - chr6_3:17614707-17614726 Msa0942560:CDS 25.0%
!!! TTTTTCAACAATTATTGAGG+AGG - chr6_3:17614710-17614729 Msa0942560:CDS 25.0%
!!! ATTTTGTTATACATATGCGA+GGG - chr6_3:17614878-17614897 Msa0942560:CDS 25.0%
!! CAACAGTTTTACTGATAAAT+TGG + chr6_3:17615000-17615019 None:intergenic 25.0%
! CAATTTATCAGTAAAACTGT+TGG - chr6_3:17614998-17615017 Msa0942560:intron 25.0%
! ATGATAAACTAGTAATGCAA+GGG + chr6_3:17615139-17615158 None:intergenic 25.0%
! AATGATAAACTAGTAATGCA+AGG + chr6_3:17615140-17615159 None:intergenic 25.0%
! CATTAAATGATAGAACCTAA+TGG + chr6_3:17615377-17615396 None:intergenic 25.0%
! CATTAGGTTCTATCATTTAA+TGG - chr6_3:17615375-17615394 Msa0942560:intron 25.0%
! TGTCTTAATTTACTCTCAAA+TGG - chr6_3:17615480-17615499 Msa0942560:intron 25.0%
!! ACAGTATGTCTATTTTATTC+TGG - chr6_3:17615797-17615816 Msa0942560:intron 25.0%
! AGTAGTTAAATAAGATCATG+AGG + chr6_3:17615874-17615893 None:intergenic 25.0%
!!! TACCTAATTTTTTTCAGTCA+GGG + chr6_3:17615996-17616015 None:intergenic 25.0%
!!! TTACCTAATTTTTTTCAGTC+AGG + chr6_3:17615997-17616016 None:intergenic 25.0%
!! TATCCAAGTTTAACTTTAGA+TGG - chr6_3:17616409-17616428 Msa0942560:intron 25.0%
!! AATCCATCTAAAGTTAAACT+TGG + chr6_3:17616415-17616434 None:intergenic 25.0%
! AATAAGCTTATCATGAAAGA+TGG + chr6_3:17616514-17616533 None:intergenic 25.0%
!! ATTGTCATTGATTGTCATAT+TGG - chr6_3:17616531-17616550 Msa0942560:intron 25.0%
! TATTAGAAAAAGACATGATC+AGG + chr6_3:17616647-17616666 None:intergenic 25.0%
!!! AGTTTTTCCTTCGTTTTTTT+TGG - chr6_3:17616914-17616933 Msa0942560:intron 25.0%
! GTACGTTTAAGCAAAATAAA+AGG + chr6_3:17616946-17616965 None:intergenic 25.0%
! GGCTGAAAAAAATTAAAACT+AGG + chr6_3:17617064-17617083 None:intergenic 25.0%
!!! GTTTTAATTTTTTTCAGCCT+TGG - chr6_3:17617065-17617084 Msa0942560:intron 25.0%
! TTAAGAGAAATAGAGAAAGT+GGG - chr6_3:17617427-17617446 Msa0942560:intron 25.0%
! TCAGATTAAATATATGATGG+AGG + chr6_3:17617691-17617710 None:intergenic 25.0%
! AAATCATCTATGGTATCAAA+AGG + chr6_3:17618460-17618479 None:intergenic 25.0%
! TTCGATATAATACTTTCATG+TGG - chr6_3:17618506-17618525 Msa0942560:intron 25.0%
! ATATAATACTTTCATGTGGA+TGG - chr6_3:17618510-17618529 Msa0942560:intron 25.0%
! ATAATAATGTAGATCAGAGA+AGG - chr6_3:17618775-17618794 Msa0942560:intron 25.0%
!!! TTTTATTTGTTGTTGCAGAT+GGG - chr6_3:17618999-17619018 Msa0942560:intron 25.0%
! ATGGATATTTGTACTTTCAT+TGG - chr6_3:17619177-17619196 Msa0942560:intron 25.0%
! TAAAATGCATCTCACATATA+TGG + chr6_3:17619419-17619438 None:intergenic 25.0%
! CAGATTATATAAGTGTATGT+AGG + chr6_3:17619491-17619510 None:intergenic 25.0%
! CTACATACACTTATATAATC+TGG - chr6_3:17619489-17619508 Msa0942560:intron 25.0%
!! TTAGACATTTGTTAAGTGAT+TGG - chr6_3:17619516-17619535 Msa0942560:intron 25.0%
!! TAGACATTTGTTAAGTGATT+GGG - chr6_3:17619517-17619536 Msa0942560:intron 25.0%
!!! TAAGTGATTGGGTTTATTTT+TGG - chr6_3:17619528-17619547 Msa0942560:intron 25.0%
! AGTAAAGAAAAAAGGGAAAA+GGG - chr6_3:17619559-17619578 Msa0942560:intron 25.0%
! ATACTTATACCAACATACTT+GGG + chr6_3:17619753-17619772 None:intergenic 25.0%
!!! CTGAATATTTCTTTTGAGAA+TGG - chr6_3:17619785-17619804 Msa0942560:five_prime_UTR 25.0%
TGATTGAAGAAGAGTCAATT+GGG + chr6_3:17612935-17612954 None:intergenic 30.0%
TACGCAACTATGCAAAATTA+GGG + chr6_3:17613168-17613187 None:intergenic 30.0%
ATACGCAACTATGCAAAATT+AGG + chr6_3:17613169-17613188 None:intergenic 30.0%
! ATTTTGCATAGTTGCGTATT+TGG - chr6_3:17613170-17613189 Msa0942560:three_prime_UTR 30.0%
! AATTTTATTCATTGGCGAGA+TGG - chr6_3:17613281-17613300 Msa0942560:three_prime_UTR 30.0%
! TTGGAGTTTAGATTTTGGAT+TGG - chr6_3:17613447-17613466 Msa0942560:exon 30.0%
!! TTGACTTTTAGAAGTTTCAG+TGG + chr6_3:17614018-17614037 None:intergenic 30.0%
! ACTGAAACTTCTAAAAGTCA+AGG - chr6_3:17614017-17614036 Msa0942560:intron 30.0%
!!! CTTGTTTTTTGGTTTCAGTT+CGG + chr6_3:17614045-17614064 None:intergenic 30.0%
GAACTGAAACCAAAAAACAA+GGG - chr6_3:17614044-17614063 Msa0942560:intron 30.0%
!!! ATCATATGTCCCTTGTTTTT+TGG + chr6_3:17614056-17614075 None:intergenic 30.0%
! AGACATCTTTTAATGTGTTG+GGG - chr6_3:17614181-17614200 Msa0942560:intron 30.0%
TGTACAACAAAAAACACCAA+TGG + chr6_3:17614209-17614228 None:intergenic 30.0%
TGTATAGTCTGTCTAATTCA+TGG + chr6_3:17614372-17614391 None:intergenic 30.0%
! GTTCTGGCAATTTTCTTTTA+TGG - chr6_3:17614478-17614497 Msa0942560:intron 30.0%
! ATGTTTCTGACCTTATCTTA+TGG - chr6_3:17614805-17614824 Msa0942560:CDS 30.0%
! TGTTTCTGACCTTATCTTAT+GGG - chr6_3:17614806-17614825 Msa0942560:CDS 30.0%
!! GATTTTGTTATACATATGCG+AGG - chr6_3:17614877-17614896 Msa0942560:CDS 30.0%
! AAATCAGAAGTTGTCTTTTC+TGG - chr6_3:17614901-17614920 Msa0942560:CDS 30.0%
TCAACAAGCATTATAAGACA+AGG + chr6_3:17614961-17614980 None:intergenic 30.0%
! AATTTTGCAAAAGAGTTTCC+AGG - chr6_3:17615078-17615097 Msa0942560:intron 30.0%
TATCTATGACTGTTAGATGA+GGG + chr6_3:17615107-17615126 None:intergenic 30.0%
ATATCTATGACTGTTAGATG+AGG + chr6_3:17615108-17615127 None:intergenic 30.0%
TTAGTGTCAACTAAACTCTT+GGG + chr6_3:17615186-17615205 None:intergenic 30.0%
ATTAGTGTCAACTAAACTCT+TGG + chr6_3:17615187-17615206 None:intergenic 30.0%
GAATTAAGCTTGATCATAGT+TGG + chr6_3:17615324-17615343 None:intergenic 30.0%
GTTCTATCATTTAATGGGAT+TGG - chr6_3:17615381-17615400 Msa0942560:intron 30.0%
!! CAAATCATAAGGTATTGCTA+CGG + chr6_3:17615556-17615575 None:intergenic 30.0%
TTGTAGAGATGCAAATCATA+AGG + chr6_3:17615567-17615586 None:intergenic 30.0%
ATTGCAATTGTAGTCATGAT+AGG + chr6_3:17615591-17615610 None:intergenic 30.0%
TAAAATAGACATACTGTTGC+TGG + chr6_3:17615794-17615813 None:intergenic 30.0%
AGAAGATACTAGATTAGTAG+CGG + chr6_3:17615847-17615866 None:intergenic 30.0%
TATACGTAATTATGGGTGAA+AGG + chr6_3:17615914-17615933 None:intergenic 30.0%
AAAATTAGGTAATTGGGAGT+TGG - chr6_3:17616005-17616024 Msa0942560:CDS 30.0%
!! TGTTCTAGAGTAACATGATT+TGG + chr6_3:17616191-17616210 None:intergenic 30.0%
!! GTAAATTCTTTTGACTGTTC+AGG - chr6_3:17616337-17616356 Msa0942560:intron 30.0%
! TTTTATAACAATGTGTCCCT+CGG - chr6_3:17616616-17616635 Msa0942560:intron 30.0%
GAATTGTCCAAAAAAAACGA+AGG + chr6_3:17616924-17616943 None:intergenic 30.0%
! CAAAACCATGAAAGCATAAT+AGG + chr6_3:17617104-17617123 None:intergenic 30.0%
!! ATTATGCTTTCATGGTTTTG+AGG - chr6_3:17617104-17617123 Msa0942560:intron 30.0%
! ATAGGACTCATCCTATTTTA+AGG - chr6_3:17617265-17617284 Msa0942560:intron 30.0%
!!! CTATTTTAAGGCTTTCTTCT+GGG - chr6_3:17617277-17617296 Msa0942560:intron 30.0%
GTTAAGAGAAATAGAGAAAG+TGG - chr6_3:17617426-17617445 Msa0942560:intron 30.0%
! GAATTTGTGTTATTGTTGAG+TGG - chr6_3:17617466-17617485 Msa0942560:intron 30.0%
AGAGAACATTAGTTCCTTTA+AGG - chr6_3:17617532-17617551 Msa0942560:intron 30.0%
ATGATATCAAAGACATGGAA+TGG + chr6_3:17617827-17617846 None:intergenic 30.0%
TTTGATATCATACCGTGATT+TGG - chr6_3:17617836-17617855 Msa0942560:intron 30.0%
! TTGGTAATAAGACTTAGATC+AGG + chr6_3:17618038-17618057 None:intergenic 30.0%
GCAGAAAATTGACATTACTT+TGG + chr6_3:17618057-17618076 None:intergenic 30.0%
TTTCTGCTAGTAATTTCCTT+AGG - chr6_3:17618070-17618089 Msa0942560:intron 30.0%
AAGAATGCAAGTTACTGTAA+TGG + chr6_3:17618257-17618276 None:intergenic 30.0%
! TTGTGCTTTTAAATGTTGTG+TGG - chr6_3:17618335-17618354 Msa0942560:intron 30.0%
! ATTTTACAAATTGGTGTGCA+GGG + chr6_3:17618412-17618431 None:intergenic 30.0%
! TATTTTACAAATTGGTGTGC+AGG + chr6_3:17618413-17618432 None:intergenic 30.0%
GAAACATTAATATTGTGTGC+TGG + chr6_3:17618553-17618572 None:intergenic 30.0%
TTGTCAATCATGCACATATA+TGG - chr6_3:17618603-17618622 Msa0942560:intron 30.0%
!! TGCTCTTGATCTTTTGTTTA+TGG - chr6_3:17618741-17618760 Msa0942560:intron 30.0%
!!! CTTTTATTTGTTGTTGCAGA+TGG - chr6_3:17618998-17619017 Msa0942560:intron 30.0%
!! TTTATTTGTTGTTGCAGATG+GGG - chr6_3:17619000-17619019 Msa0942560:intron 30.0%
!!! ATGTTGTGTCATTTTTGTCT+TGG - chr6_3:17619027-17619046 Msa0942560:intron 30.0%
!!! TGTTGTGTCATTTTTGTCTT+GGG - chr6_3:17619028-17619047 Msa0942560:intron 30.0%
CTGATAGAAGACGAAAATAA+AGG + chr6_3:17619094-17619113 None:intergenic 30.0%
AATACACATGTTTGAGAAGA+GGG + chr6_3:17619450-17619469 None:intergenic 30.0%
AAATACACATGTTTGAGAAG+AGG + chr6_3:17619451-17619470 None:intergenic 30.0%
CAGTAAAGAAAAAAGGGAAA+AGG - chr6_3:17619558-17619577 Msa0942560:intron 30.0%
AGAATGTTCTTATTGGAAAC+TGG - chr6_3:17619588-17619607 Msa0942560:intron 30.0%
TACTTATACCAACATACTTG+GGG + chr6_3:17619752-17619771 None:intergenic 30.0%
GATACTTATACCAACATACT+TGG + chr6_3:17619754-17619773 None:intergenic 30.0%
GTGATTGAAGAAGAGTCAAT+TGG + chr6_3:17612936-17612955 None:intergenic 35.0%
CTCTAGCTATCACTTTGATT+TGG - chr6_3:17613050-17613069 Msa0942560:three_prime_UTR 35.0%
!! GGATTGTGTTGTTTGAGATT+TGG - chr6_3:17613390-17613409 Msa0942560:three_prime_UTR 35.0%
TATGTAATTCCTAGCTTGAC+CGG - chr6_3:17613588-17613607 Msa0942560:intron 35.0%
CAACCTAAAAATATCGGCAT+TGG + chr6_3:17613614-17613633 None:intergenic 35.0%
!!! CAATGCCGATATTTTTAGGT+TGG - chr6_3:17613612-17613631 Msa0942560:intron 35.0%
GGTGTCCAACCTAAAAATAT+CGG + chr6_3:17613620-17613639 None:intergenic 35.0%
CGAACTGAAACCAAAAAACA+AGG - chr6_3:17614043-17614062 Msa0942560:intron 35.0%
GAAATACGCTATGTTTGTTC+TGG - chr6_3:17614462-17614481 Msa0942560:intron 35.0%
AGATCAAGAAATAACGCACA+AGG + chr6_3:17614596-17614615 None:intergenic 35.0%
TTCTTACCAGAGAATGAGAT+TGG + chr6_3:17614741-17614760 None:intergenic 35.0%
! GATTTAAAATTGAGACCCCT+AGG - chr6_3:17614828-17614847 Msa0942560:CDS 35.0%
ATCTATGACTGTTAGATGAG+GGG + chr6_3:17615106-17615125 None:intergenic 35.0%
TGATCAAGCTTAATTCCGTT+AGG - chr6_3:17615328-17615347 Msa0942560:intron 35.0%
AAAACTGTGCAAGCTACAAA+TGG + chr6_3:17615667-17615686 None:intergenic 35.0%
!!! CTAATTTTTTTCAGTCAGGG+AGG + chr6_3:17615993-17616012 None:intergenic 35.0%
CTCCCTGACTGAAAAAAATT+AGG - chr6_3:17615991-17616010 Msa0942560:CDS 35.0%
! CTAGAGTAACATGATTTGGA+GGG + chr6_3:17616187-17616206 None:intergenic 35.0%
! TCTAGAGTAACATGATTTGG+AGG + chr6_3:17616188-17616207 None:intergenic 35.0%
!!! TGTGTTTGCGAATTGGTTTT+TGG + chr6_3:17616216-17616235 None:intergenic 35.0%
AACTCAGTTGTAGTACTAAG+AGG + chr6_3:17616464-17616483 None:intergenic 35.0%
TAGTACTACAACTGAGTTCT+TGG - chr6_3:17616466-17616485 Msa0942560:intron 35.0%
TCCATTGTCTCAAAGAAAGA+CGG - chr6_3:17616703-17616722 Msa0942560:intron 35.0%
AATTAAAGCAAGGGCTCTTA+AGG + chr6_3:17616752-17616771 None:intergenic 35.0%
TTAAGAGCCCTTGCTTTAAT+TGG - chr6_3:17616751-17616770 Msa0942560:intron 35.0%
CACTTATGATCACAAATGCA+AGG + chr6_3:17616985-17617004 None:intergenic 35.0%
CTTGCATTTGTGATCATAAG+TGG - chr6_3:17616983-17617002 Msa0942560:intron 35.0%
GTCTTCCTATTATGCTTTCA+TGG - chr6_3:17617096-17617115 Msa0942560:intron 35.0%
CTAGCAAATATCGCAATACA+TGG + chr6_3:17617202-17617221 None:intergenic 35.0%
TCCTATCACAGGATCTATAA+CGG + chr6_3:17617251-17617270 None:intergenic 35.0%
CCAGAAGAAAGCCTTAAAAT+AGG + chr6_3:17617279-17617298 None:intergenic 35.0%
!!! CCTATTTTAAGGCTTTCTTC+TGG - chr6_3:17617276-17617295 Msa0942560:intron 35.0%
AGTTAGCACATCAGTTGTAT+AGG - chr6_3:17617382-17617401 Msa0942560:intron 35.0%
ACATCAGTTGTATAGGTTCA+TGG - chr6_3:17617389-17617408 Msa0942560:intron 35.0%
!! TTAGCTGATTTTGTATGGAC+AGG - chr6_3:17617757-17617776 Msa0942560:intron 35.0%
! GTGTATAAACTTGATGACCA+CGG + chr6_3:17617788-17617807 None:intergenic 35.0%
ACGGTATGATATCAAAGACA+TGG + chr6_3:17617832-17617851 None:intergenic 35.0%
!! ATATCATACCGTGATTTGGT+TGG - chr6_3:17617840-17617859 Msa0942560:intron 35.0%
TTACACAGAAGAAGAGGTAA+AGG - chr6_3:17617869-17617888 Msa0942560:intron 35.0%
GTAATAAGACTTAGATCAGG+AGG + chr6_3:17618035-17618054 None:intergenic 35.0%
AATATACCGAAATACCAGCA+GGG + chr6_3:17618201-17618220 None:intergenic 35.0%
ATTCTTCAGAAGTTGTCATG+TGG - chr6_3:17618271-17618290 Msa0942560:intron 35.0%
! CATTACAATCCTTATTTCCC+TGG - chr6_3:17618802-17618821 Msa0942560:intron 35.0%
ATCATTAAGCATCTTAGGCA+TGG + chr6_3:17618839-17618858 None:intergenic 35.0%
ATGCCTAAGATGCTTAATGA+TGG - chr6_3:17618838-17618857 Msa0942560:intron 35.0%
!! TCATAAAAGTACCTGAGCTT+CGG + chr6_3:17618896-17618915 None:intergenic 35.0%
ACTTGCAGATGGGATTTAAA+TGG - chr6_3:17619158-17619177 Msa0942560:intron 35.0%
TTCTGTAACTCCAACGAATT+TGG + chr6_3:17619357-17619376 None:intergenic 35.0%
ATATAAGTGTATGTAGGTCC+TGG + chr6_3:17619485-17619504 None:intergenic 35.0%
GAGTGTCAGAATGTTCTTAT+TGG - chr6_3:17619581-17619600 Msa0942560:intron 35.0%
AGAAGAGTCAATTGGGACTT+GGG + chr6_3:17612928-17612947 None:intergenic 40.0%
AAGAAGAGTCAATTGGGACT+TGG + chr6_3:17612929-17612948 None:intergenic 40.0%
AGAGAAAGAGGCTTACGAAA+TGG + chr6_3:17613030-17613049 None:intergenic 40.0%
TGATAGCTAGAGAGAGAAAG+AGG + chr6_3:17613042-17613061 None:intergenic 40.0%
!! CTAAAAATATCGGCATTGGC+CGG + chr6_3:17613610-17613629 None:intergenic 40.0%
!! GGGTCTCTTATAGCTAGTTT+TGG - chr6_3:17613832-17613851 Msa0942560:intron 40.0%
! TTAATGTGTTGGGGTACCAT+TGG - chr6_3:17614190-17614209 Msa0942560:intron 40.0%
GAAACTCCAATCTCATTCTC+TGG - chr6_3:17614732-17614751 Msa0942560:CDS 40.0%
GGATTAATGTCACGATTCTC+TGG - chr6_3:17615019-17615038 Msa0942560:intron 40.0%
TCAAGCTTAATTCCGTTAGG+TGG - chr6_3:17615331-17615350 Msa0942560:intron 40.0%
GCTAGTCATTTGATGCCATT+AGG - chr6_3:17615359-17615378 Msa0942560:intron 40.0%
!!! CTGTCCACCACTTTTTTCTT+TGG - chr6_3:17615444-17615463 Msa0942560:intron 40.0%
CATGCCAAAGAAAAAAGTGG+TGG + chr6_3:17615451-17615470 None:intergenic 40.0%
CCACATGCCAAAGAAAAAAG+TGG + chr6_3:17615454-17615473 None:intergenic 40.0%
!!! CCACTTTTTTCTTTGGCATG+TGG - chr6_3:17615451-17615470 Msa0942560:intron 40.0%
CTCTCAAATGGTCGTTATCA+AGG - chr6_3:17615492-17615511 Msa0942560:intron 40.0%
! TTACCGTAGTCCAGTAGTTT+TGG - chr6_3:17615627-17615646 Msa0942560:intron 40.0%
AAGCCAAAACTACTGGACTA+CGG + chr6_3:17615633-17615652 None:intergenic 40.0%
AGCTCATAAGCCAAAACTAC+TGG + chr6_3:17615640-17615659 None:intergenic 40.0%
! GGTAATTGGGAGTTGGATTT+TGG - chr6_3:17616012-17616031 Msa0942560:CDS 40.0%
! AATTGGGAGTTGGATTTTGG+AGG - chr6_3:17616015-17616034 Msa0942560:CDS 40.0%
! ATTGGGAGTTGGATTTTGGA+GGG - chr6_3:17616016-17616035 Msa0942560:CDS 40.0%
! CTAAAGGTGTGTTTGCGAAT+TGG + chr6_3:17616223-17616242 None:intergenic 40.0%
! TGAGTTCTTGGCTCCAATTT+TGG - chr6_3:17616478-17616497 Msa0942560:intron 40.0%
TGGCATGCAGTAACCAAAAT+TGG + chr6_3:17616494-17616513 None:intergenic 40.0%
GAGACAATGGATGATACAGA+AGG + chr6_3:17616694-17616713 None:intergenic 40.0%
!! ACCGTCTTTCTTTGAGACAA+TGG + chr6_3:17616707-17616726 None:intergenic 40.0%
ACCAGCTCCAATTAAAGCAA+GGG + chr6_3:17616761-17616780 None:intergenic 40.0%
TGGTTGTCAAAGTCAACCAT+AGG - chr6_3:17617003-17617022 Msa0942560:intron 40.0%
TAGGAAGACTAGATTCTCCA+AGG + chr6_3:17617085-17617104 None:intergenic 40.0%
TGAGGTGACATGATCTAACA+TGG - chr6_3:17617122-17617141 Msa0942560:intron 40.0%
AATAGGATGAGTCCTATCAC+AGG + chr6_3:17617262-17617281 None:intergenic 40.0%
! TTCTTGTTTGCTCTACACCT+CGG - chr6_3:17617323-17617342 Msa0942560:intron 40.0%
AGTTGTATAGGTTCATGGTG+TGG - chr6_3:17617394-17617413 Msa0942560:intron 40.0%
AGTGGGAAATGAATTGTGCA+AGG - chr6_3:17617444-17617463 Msa0942560:intron 40.0%
ATTGTTGAGTGGAGAGAGAA+AGG - chr6_3:17617477-17617496 Msa0942560:intron 40.0%
!! GAGAGAGAAAGGTATCAAGA+GGG - chr6_3:17617488-17617507 Msa0942560:intron 40.0%
CATAGAGCTAAGCTCCTTAA+AGG + chr6_3:17617549-17617568 None:intergenic 40.0%
!! CTTTAAGGAGCTTAGCTCTA+TGG - chr6_3:17617547-17617566 Msa0942560:intron 40.0%
TATCAAAGACATGGAATGGC+AGG + chr6_3:17617823-17617842 None:intergenic 40.0%
AAGCAACACCAACCAAATCA+CGG + chr6_3:17617851-17617870 None:intergenic 40.0%
! TGTTGCTTACACAGAAGAAG+AGG - chr6_3:17617863-17617882 Msa0942560:intron 40.0%
AGAAGAAGAGGTAAAGGCTA+TGG - chr6_3:17617875-17617894 Msa0942560:intron 40.0%
AACATCTCACCCTCATCATT+GGG + chr6_3:17617927-17617946 None:intergenic 40.0%
AAACATCTCACCCTCATCAT+TGG + chr6_3:17617928-17617947 None:intergenic 40.0%
AAAGCGATCACTGAGTTTAC+CGG + chr6_3:17617958-17617977 None:intergenic 40.0%
GATTCATTTGCATATGGCTG+AGG + chr6_3:17617981-17618000 None:intergenic 40.0%
! GCAGCTGATTCATTTGCATA+TGG + chr6_3:17617987-17618006 None:intergenic 40.0%
ATGCAAATGAATCAGCTGCT+AGG - chr6_3:17617988-17618007 Msa0942560:CDS 40.0%
AAGACTTAGATCAGGAGGAT+AGG + chr6_3:17618030-17618049 None:intergenic 40.0%
TATGTGTTTGCTCTCCTAAC+TGG - chr6_3:17618163-17618182 Msa0942560:intron 40.0%
ATATACCGAAATACCAGCAG+GGG + chr6_3:17618200-17618219 None:intergenic 40.0%
GAATATACCGAAATACCAGC+AGG + chr6_3:17618202-17618221 None:intergenic 40.0%
AAATTGCTTGACCACCTGAT+GGG - chr6_3:17618294-17618313 Msa0942560:intron 40.0%
ATACTTTCATGTGGATGGCT+TGG - chr6_3:17618515-17618534 Msa0942560:intron 40.0%
AGTATTGTCACACGGATACA+AGG + chr6_3:17618722-17618741 None:intergenic 40.0%
TCAAGAGCAGTATTGTCACA+CGG + chr6_3:17618730-17618749 None:intergenic 40.0%
! TACAATCCTTATTTCCCTGG+TGG - chr6_3:17618805-17618824 Msa0942560:intron 40.0%
! GGTACTTTTATGAGCTGATG+AGG - chr6_3:17618903-17618922 Msa0942560:intron 40.0%
ACATTGCTACTACTTGCAGA+TGG - chr6_3:17619147-17619166 Msa0942560:intron 40.0%
CATTGCTACTACTTGCAGAT+GGG - chr6_3:17619148-17619167 Msa0942560:intron 40.0%
TGTTCTTAAGTCTCGCAAGT+TGG - chr6_3:17619240-17619259 Msa0942560:intron 40.0%
GAATTTGGCATGACGAGAAT+TGG + chr6_3:17619342-17619361 None:intergenic 40.0%
! TGTATTTTGTTACCTCCTCC+AGG - chr6_3:17619464-17619483 Msa0942560:intron 40.0%
AATGAAGACCCCAAGTATGT+TGG - chr6_3:17619741-17619760 Msa0942560:five_prime_UTR 40.0%
AGAGAGAGAGAGAGAGAAGT+TGG + chr6_3:17612958-17612977 None:intergenic 45.0%
! TACGAAATGGAAGCGCGATT+GGG + chr6_3:17613017-17613036 None:intergenic 45.0%
! TTACGAAATGGAAGCGCGAT+TGG + chr6_3:17613018-17613037 None:intergenic 45.0%
! CGGCCAATGCCGATATTTTT+AGG - chr6_3:17613608-17613627 Msa0942560:intron 45.0%
CACAGTTGTGTGTGAGTTTC+AGG - chr6_3:17613666-17613685 Msa0942560:CDS 45.0%
AGTTGTGTGTGAGTTTCAGG+TGG - chr6_3:17613669-17613688 Msa0942560:CDS 45.0%
CTTTGCAATTGCCTTGCTTG+AGG - chr6_3:17614104-17614123 Msa0942560:intron 45.0%
GCTAGAAGTTCTTGAACGAG+AGG - chr6_3:17614128-17614147 Msa0942560:intron 45.0%
ATCCACAGTCTGAACAGAGA+TGG - chr6_3:17614678-17614697 Msa0942560:intron 45.0%
ATCCCTCAAAGTCTAGCCTA+GGG + chr6_3:17614847-17614866 None:intergenic 45.0%
! TAGGCTAGACTTTGAGGGAT+GGG - chr6_3:17614847-17614866 Msa0942560:CDS 45.0%
!! GACTAGCTTAGTCCACCTAA+CGG + chr6_3:17615346-17615365 None:intergenic 45.0%
!! TAAGGTATTGCTACGGCATC+AGG + chr6_3:17615549-17615568 None:intergenic 45.0%
!! TTGGGAGTTGGATTTTGGAG+GGG - chr6_3:17616017-17616036 Msa0942560:CDS 45.0%
!! GATTTTGGAGGGGAATGCTT+TGG - chr6_3:17616027-17616046 Msa0942560:CDS 45.0%
ACATGATCAGGATCTTCCGA+GGG + chr6_3:17616635-17616654 None:intergenic 45.0%
GTCTCAAAGAAAGACGGTTC+TGG - chr6_3:17616709-17616728 Msa0942560:intron 45.0%
CACCAGCTCCAATTAAAGCA+AGG + chr6_3:17616762-17616781 None:intergenic 45.0%
TTAATTGGAGCTGGTGTCTC+AGG - chr6_3:17616766-17616785 Msa0942560:intron 45.0%
GCCGTTATAGATCCTGTGAT+AGG - chr6_3:17617247-17617266 Msa0942560:intron 45.0%
TTAAGGCTTTCTTCTGGGTC+AGG - chr6_3:17617282-17617301 Msa0942560:intron 45.0%
TGTATAGGTTCATGGTGTGG+AGG - chr6_3:17617397-17617416 Msa0942560:intron 45.0%
GTATAGGTTCATGGTGTGGA+GGG - chr6_3:17617398-17617417 Msa0942560:intron 45.0%
!! GGAGAGAGAAAGGTATCAAG+AGG - chr6_3:17617487-17617506 Msa0942560:intron 45.0%
AGGGATCATGCAGTCTGTTA+GGG - chr6_3:17617507-17617526 Msa0942560:intron 45.0%
ACATCTCACCCTCATCATTG+GGG + chr6_3:17617926-17617945 None:intergenic 45.0%
AAGCGATCACTGAGTTTACC+GGG + chr6_3:17617957-17617976 None:intergenic 45.0%
!! TCAGCTGCTAGGTTTGCTAA+TGG - chr6_3:17617999-17618018 Msa0942560:CDS 45.0%
! CGTTTGCCCTTTGTGTTTTC+AGG - chr6_3:17618120-17618139 Msa0942560:intron 45.0%
GACGAGCCTGAAAACACAAA+GGG + chr6_3:17618129-17618148 None:intergenic 45.0%
TGACGAGCCTGAAAACACAA+AGG + chr6_3:17618130-17618149 None:intergenic 45.0%
!! TGTTTTCAGGCTCGTCACAA+TGG - chr6_3:17618133-17618152 Msa0942560:intron 45.0%
TATACCGAAATACCAGCAGG+GGG + chr6_3:17618199-17618218 None:intergenic 45.0%
GAAATTGCTTGACCACCTGA+TGG - chr6_3:17618293-17618312 Msa0942560:intron 45.0%
CAAATTGGTGTGCAGGGAAA+GGG + chr6_3:17618406-17618425 None:intergenic 45.0%
ACAAATTGGTGTGCAGGGAA+AGG + chr6_3:17618407-17618426 None:intergenic 45.0%
AAGCATCTTAGGCATGGCAA+TGG + chr6_3:17618833-17618852 None:intergenic 45.0%
GCGCCATCATTAAGCATCTT+AGG + chr6_3:17618844-17618863 None:intergenic 45.0%
GGCGCTGTTGAATATGAAGA+TGG - chr6_3:17618859-17618878 Msa0942560:intron 45.0%
! AGTTTTCGCTCTTCCATCTC+AGG + chr6_3:17619062-17619081 None:intergenic 45.0%
TGAGATGGAAGAGCGAAAAC+TGG - chr6_3:17619061-17619080 Msa0942560:intron 45.0%
TCTCGTCATGCCAAATTCGT+TGG - chr6_3:17619344-17619363 Msa0942560:intron 45.0%
TAAGTGTATGTAGGTCCTGG+AGG + chr6_3:17619482-17619501 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTGTATT+GGG - chr6_3:17613369-17613388 Msa0942560:three_prime_UTR 5.0%
!!! TAAAGTATTTTTTTTTTTTT+TGG - chr6_3:17613428-17613447 Msa0942560:three_prime_UTR 5.0%
!!! TTTTTTTTTTTTTTTGATTT+AGG - chr6_3:17613526-17613545 Msa0942560:CDS 5.0%
!!! AAATTTTTAATACTATAAAT+AGG - chr6_3:17616272-17616291 Msa0942560:intron 5.0%
!! TTGGGACTTGGGAGGTGTTT+GGG + chr6_3:17612917-17612936 None:intergenic 50.0%
!! ATTGGGACTTGGGAGGTGTT+TGG + chr6_3:17612918-17612937 None:intergenic 50.0%
AGAGTCAATTGGGACTTGGG+AGG + chr6_3:17612925-17612944 None:intergenic 50.0%
GGAAGAGAGAGGATCGAATC+CGG + chr6_3:17612996-17613015 None:intergenic 50.0%
!! TTAGGTTGGACACCTTCACC+TGG - chr6_3:17613626-17613645 Msa0942560:intron 50.0%
! TAGGTTGGACACCTTCACCT+GGG - chr6_3:17613627-17613646 Msa0942560:intron 50.0%
CACACACAACTGTGAGATCC+CGG + chr6_3:17613660-17613679 None:intergenic 50.0%
AACTTCTAGCGCCTCAAGCA+AGG + chr6_3:17614118-17614137 None:intergenic 50.0%
AGCCATCTCTGTTCAGACTG+TGG + chr6_3:17614683-17614702 None:intergenic 50.0%
ACAGTCTGAACAGAGATGGC+TGG - chr6_3:17614682-17614701 Msa0942560:CDS 50.0%
ACCCCTAGGCTAGACTTTGA+GGG - chr6_3:17614842-17614861 Msa0942560:CDS 50.0%
TCCCTCAAAGTCTAGCCTAG+GGG + chr6_3:17614846-17614865 None:intergenic 50.0%
CATCCCTCAAAGTCTAGCCT+AGG + chr6_3:17614848-17614867 None:intergenic 50.0%
! CTAGGCTAGACTTTGAGGGA+TGG - chr6_3:17614846-17614865 Msa0942560:CDS 50.0%
! AGGCTAGACTTTGAGGGATG+GGG - chr6_3:17614848-17614867 Msa0942560:CDS 50.0%
ACTGTTAGATGAGGGGAACC+TGG + chr6_3:17615099-17615118 None:intergenic 50.0%
ATCAGGTGATGTGGATCGCA+TGG + chr6_3:17615532-17615551 None:intergenic 50.0%
CAGGGAGGATTGACGAAGAT+TGG + chr6_3:17615978-17615997 None:intergenic 50.0%
! TTGGAGGGGAATGCTTTGGA+AGG - chr6_3:17616031-17616050 Msa0942560:CDS 50.0%
GACATGATCAGGATCTTCCG+AGG + chr6_3:17616636-17616655 None:intergenic 50.0%
!! AAAGACGGTTCTGGCTCTAC+TGG - chr6_3:17616718-17616737 Msa0942560:intron 50.0%
GCCCTTGCTTTAATTGGAGC+TGG - chr6_3:17616757-17616776 Msa0942560:intron 50.0%
! AGCTGGTGTCTCAGGTCTTT+TGG - chr6_3:17616774-17616793 Msa0942560:intron 50.0%
! GCTGGTGTCTCAGGTCTTTT+GGG - chr6_3:17616775-17616794 Msa0942560:intron 50.0%
TCAGCTGATGAAGCTGAGCA+TGG - chr6_3:17616814-17616833 Msa0942560:intron 50.0%
ATGGATAGTGTGGAGATGCG+AGG + chr6_3:17616840-17616859 None:intergenic 50.0%
TCGCATCTCCACACTATCCA+TGG - chr6_3:17616839-17616858 Msa0942560:intron 50.0%
GTTTGCTCTACACCTCGGAT+AGG - chr6_3:17617328-17617347 Msa0942560:intron 50.0%
GGATAGGAGCCTGAATGAGA+AGG - chr6_3:17617344-17617363 Msa0942560:intron 50.0%
TAGGAGCCTGAATGAGAAGG+TGG - chr6_3:17617347-17617366 Msa0942560:intron 50.0%
AGGAGCCTGAATGAGAAGGT+GGG - chr6_3:17617348-17617367 Msa0942560:intron 50.0%
TTGAGCCCACCTTCTCATTC+AGG + chr6_3:17617356-17617375 None:intergenic 50.0%
GAGGGATCATGCAGTCTGTT+AGG - chr6_3:17617506-17617525 Msa0942560:intron 50.0%
GGGATCATGCAGTCTGTTAG+GGG - chr6_3:17617508-17617527 Msa0942560:intron 50.0%
TATGGCAGCTGAGATTGAGG+TGG - chr6_3:17617893-17617912 Msa0942560:intron 50.0%
GCTGAGATTGAGGTGGAAGA+TGG - chr6_3:17617900-17617919 Msa0942560:intron 50.0%
GAAGATGGCCCCAATGATGA+GGG - chr6_3:17617915-17617934 Msa0942560:intron 50.0%
AGCGATCACTGAGTTTACCG+GGG + chr6_3:17617956-17617975 None:intergenic 50.0%
!! GCTGCTAGGTTTGCTAATGG+AGG - chr6_3:17618002-17618021 Msa0942560:CDS 50.0%
ATACCGAAATACCAGCAGGG+GGG + chr6_3:17618198-17618217 None:intergenic 50.0%
TTGGTTCCAAACCACCCATC+AGG + chr6_3:17618311-17618330 None:intergenic 50.0%
ATGGCTCCACCAGGGAAATA+AGG + chr6_3:17618814-17618833 None:intergenic 50.0%
CCGAAGACGACGATAGTATG+CGG + chr6_3:17619215-17619234 None:intergenic 50.0%
CCGCATACTATCGTCGTCTT+CGG - chr6_3:17619212-17619231 Msa0942560:intron 50.0%
CATACTATCGTCGTCTTCGG+TGG - chr6_3:17619215-17619234 Msa0942560:intron 50.0%
CTCTCTGCAGCTTCTCTCTC+CGG - chr6_3:17612974-17612993 Msa0942560:three_prime_UTR 55.0%
AAGCGCGATTGGGAAGAGAG+AGG + chr6_3:17613007-17613026 None:intergenic 55.0%
GTCTGAACAGAGATGGCTGG+AGG - chr6_3:17614685-17614704 Msa0942560:CDS 55.0%
GACCCCTAGGCTAGACTTTG+AGG - chr6_3:17614841-17614860 Msa0942560:CDS 55.0%
! GGCTAGACTTTGAGGGATGG+GGG - chr6_3:17614849-17614868 Msa0942560:CDS 55.0%
TGCTACGGCATCAGGTGATG+TGG + chr6_3:17615541-17615560 None:intergenic 55.0%
TCGTGAGGCCATGGATAGTG+TGG + chr6_3:17616850-17616869 None:intergenic 55.0%
ACACTATCCATGGCCTCACG+AGG - chr6_3:17616849-17616868 Msa0942560:intron 55.0%
CACTATCCATGGCCTCACGA+GGG - chr6_3:17616850-17616869 Msa0942560:intron 55.0%
GAACTGAGGATTCCCTCGTG+AGG + chr6_3:17616865-17616884 None:intergenic 55.0%
CTCATTCAGGCTCCTATCCG+AGG + chr6_3:17617343-17617362 None:intergenic 55.0%
TGTATGGACAGGATTCGCCG+TGG - chr6_3:17617768-17617787 Msa0942560:intron 55.0%
GGCTATGGCAGCTGAGATTG+AGG - chr6_3:17617890-17617909 Msa0942560:intron 55.0%
GGAAGATGGCCCCAATGATG+AGG - chr6_3:17617914-17617933 Msa0942560:intron 55.0%
GGTGAGATGTTTACACGCCC+CGG - chr6_3:17617936-17617955 Msa0942560:intron 55.0%
AAATACCAGCAGGGGGGTCA+CGG + chr6_3:17618192-17618211 None:intergenic 55.0%
TGACCCCCCTGCTGGTATTT+CGG - chr6_3:17618192-17618211 Msa0942560:intron 55.0%
TTGCTTGACCACCTGATGGG+TGG - chr6_3:17618297-17618316 Msa0942560:intron 55.0%
! TGACCACCTGATGGGTGGTT+TGG - chr6_3:17618302-17618321 Msa0942560:intron 55.0%
GTTCCAAACCACCCATCAGG+TGG + chr6_3:17618308-17618327 None:intergenic 55.0%
TACCTGAGCTTCGGTAGCAG+GGG + chr6_3:17618887-17618906 None:intergenic 55.0%
GTACCTGAGCTTCGGTAGCA+GGG + chr6_3:17618888-17618907 None:intergenic 55.0%
AGTACCTGAGCTTCGGTAGC+AGG + chr6_3:17618889-17618908 None:intergenic 55.0%
TTGGGCAGCAGAACCTGAGA+TGG - chr6_3:17619046-17619065 Msa0942560:intron 55.0%
GTGTATGTAGGTCCTGGAGG+AGG + chr6_3:17619479-17619498 None:intergenic 55.0%
CCTTCACCTGGGTTCGAGTC+CGG - chr6_3:17613638-17613657 Msa0942560:intron 60.0%
CTTCACCTGGGTTCGAGTCC+GGG - chr6_3:17613639-17613658 Msa0942560:intron 60.0%
AGGATTCCCTCGTGAGGCCA+TGG + chr6_3:17616859-17616878 None:intergenic 60.0%
GGGGGTCACGGTAACCAGTT+AGG + chr6_3:17618180-17618199 None:intergenic 60.0%
GCATGGCAATGGCTCCACCA+GGG + chr6_3:17618822-17618841 None:intergenic 60.0%
TACCCCTGCTACCGAAGCTC+AGG - chr6_3:17618882-17618901 Msa0942560:intron 60.0%
!! CGGCATTGGCCGGTCAAGCT+AGG + chr6_3:17613600-17613619 None:intergenic 65.0%
CCGGACTCGAACCCAGGTGA+AGG + chr6_3:17613641-17613660 None:intergenic 65.0%
GAGATCCCGGACTCGAACCC+AGG + chr6_3:17613647-17613666 None:intergenic 65.0%
GGCATGGCAATGGCTCCACC+AGG + chr6_3:17618823-17618842 None:intergenic 65.0%
GGTTACCGTGACCCCCCTGC+TGG - chr6_3:17618184-17618203 Msa0942560:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 17612896 17619842 17612896 ID=Msa0942560;Name=Msa0942560
chr6_3 mRNA 17612896 17619842 17612896 ID=Msa0942560-mRNA-1;Parent=Msa0942560;Name=Msa0942560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=149|1|1|1|0.85|0.75|8|560|306
chr6_3 exon 17612896 17613572 17612896 ID=Msa0942560-mRNA-1:exon:5287;Parent=Msa0942560-mRNA-1
chr6_3 exon 17613656 17613721 17613656 ID=Msa0942560-mRNA-1:exon:5286;Parent=Msa0942560-mRNA-1
chr6_3 exon 17613835 17613951 17613835 ID=Msa0942560-mRNA-1:exon:5285;Parent=Msa0942560-mRNA-1
chr6_3 exon 17614525 17614596 17614525 ID=Msa0942560-mRNA-1:exon:5284;Parent=Msa0942560-mRNA-1
chr6_3 exon 17614680 17614959 17614680 ID=Msa0942560-mRNA-1:exon:5283;Parent=Msa0942560-mRNA-1
chr6_3 exon 17615839 17616050 17615839 ID=Msa0942560-mRNA-1:exon:5282;Parent=Msa0942560-mRNA-1
chr6_3 exon 17617985 17618052 17617985 ID=Msa0942560-mRNA-1:exon:5281;Parent=Msa0942560-mRNA-1
chr6_3 exon 17619705 17619842 17619705 ID=Msa0942560-mRNA-1:exon:5280;Parent=Msa0942560-mRNA-1
chr6_3 five_prime_UTR 17619705 17619842 17619705 ID=Msa0942560-mRNA-1:five_prime_utr;Parent=Msa0942560-mRNA-1
chr6_3 five_prime_UTR 17618042 17618052 17618042 ID=Msa0942560-mRNA-1:five_prime_utr;Parent=Msa0942560-mRNA-1
chr6_3 CDS 17617985 17618041 17617985 ID=Msa0942560-mRNA-1:cds;Parent=Msa0942560-mRNA-1
chr6_3 CDS 17615839 17616050 17615839 ID=Msa0942560-mRNA-1:cds;Parent=Msa0942560-mRNA-1
chr6_3 CDS 17614680 17614959 17614680 ID=Msa0942560-mRNA-1:cds;Parent=Msa0942560-mRNA-1
chr6_3 CDS 17614525 17614596 17614525 ID=Msa0942560-mRNA-1:cds;Parent=Msa0942560-mRNA-1
chr6_3 CDS 17613835 17613951 17613835 ID=Msa0942560-mRNA-1:cds;Parent=Msa0942560-mRNA-1
chr6_3 CDS 17613656 17613721 17613656 ID=Msa0942560-mRNA-1:cds;Parent=Msa0942560-mRNA-1
chr6_3 CDS 17613456 17613572 17613456 ID=Msa0942560-mRNA-1:cds;Parent=Msa0942560-mRNA-1
chr6_3 three_prime_UTR 17612896 17613455 17612896 ID=Msa0942560-mRNA-1:three_prime_utr;Parent=Msa0942560-mRNA-1
Gene Sequence

>Msa0942560

ATGGCTGGAGGTGTTTTTCAACAATTATTGAGGAGGAAACTCCAATCTCATTCTCTGAGTCCTTCTGTATCATCCATTGTCTCAAAGAAAGACGGTTCTGGCTCTACTGGCAGCAGTTCCTTAAGAGCCCTTGCTTTAATTGGAGCTGGTGTCTCAGGTCTTTTGGGTTTTGCAACAACAGCATCAGCTGATGAAGCTGAGCATGGCCTCGCATCTCCACACTATCCATGGCCTCACGAGGGAATCCTCAGTTCATATGATCACGCTTCGATTCGCCGTGGTCATCAAGTTTATACACAAGTCTGTGCTTCCTGCCATTCCATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTACACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGAAGATGGCCCCAATGATGAGGGTGAGATGTTTACACGCCCCGGTAAACTCAGTGATCGCTTTCCTCAGCCATATGCAAATGAATCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCTGATCTAAGTCTTATTACCAAAGCTCGTCACAATGGTCAGAACTATGTGTTTGCTCTCCTAACTGGTTACCGTGACCCCCCTGCTGGTATTTCGATCAGAGAAGGATTGCATTACAATCCTTATTTCCCTGGTGGAGCCATTGCCATGCCTAAGATGCTTAATGATGGCGCTGTTGAATATGAAGATGGTACCCCTGCTACCGAAGCTCAGATGGGGAAAGATGTTGTGTCATTTTTGTCTTGGGCAGCAGAACCTGAGATGGAAGAGCGAAAACTGATGGGATTTAAATGGATATTTGTACTTTCATTGGCATTACTTCAAGCCGCATACTATCGTCGTCTTCGGTGGTCTGTTCTTAAGTCTCGCAAGTTGGTTCTTGATGTTGTCAACTAG
Protein sequence

>Msa0942560

MAGGVFQQLLRRKLQSHSLSPSVSSIVSKKDGSGSTGSSSLRALALIGAGVSGLLGFATTASADEAEHGLASPHYPWPHEGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN*