AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968680 MtrunA17_Chr2g0286231 100.000 152 0 0 1 152 409 560 1.38e-104 309
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968680 AT2G39090.1 82.237 152 27 0 1 152 407 558 4.27e-86 262
Msa0968680 AT2G39090.2 86.667 105 14 0 1 105 407 511 6.05e-58 188

Find 66 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTCCCACCAGAATTAC+TGG 0.231176 6_4:+9732 None:intergenic
CGCATTATCAGGCTGCATTA+AGG 0.287884 6_4:-9411 Msa0968680:intron
TCATTGTCTTCATCTTCTTC+AGG 0.314723 6_4:+8811 None:intergenic
GGAAGCTTTGTCGCATTATC+AGG 0.318728 6_4:-9422 Msa0968680:CDS
CCTTGGTGCTGCACTAGCTT+TGG 0.339345 6_4:-9575 Msa0968680:CDS
ATATATTGAGTGAGTGGTTT+GGG 0.353572 6_4:-8509 Msa0968680:three_prime_UTR
TCATCTTCTTCAGGTGCATC+AGG 0.357087 6_4:+8820 None:intergenic
CCAGAATGAAGCAGCAAAAC+GGG 0.358228 6_4:-9072 Msa0968680:CDS
GATGTGCATGCCAGTAATTC+TGG 0.359532 6_4:-9742 Msa0968680:CDS
CATATATTGAGTGAGTGGTT+TGG 0.390424 6_4:-8510 Msa0968680:three_prime_UTR
GCAAAGGCTTTAAAATTAGT+AGG 0.411992 6_4:-9766 Msa0968680:CDS
GATATATGTTAACCAATGTT+TGG 0.427495 6_4:-8362 Msa0968680:three_prime_UTR
CATGCATTCCATGTTTAATA+CGG 0.430450 6_4:+8552 None:intergenic
TTATCGCCAACTGTTGCATC+TGG 0.434614 6_4:-8578 Msa0968680:three_prime_UTR
TTTAAAGCCTTTGCAGATTG+AGG 0.438951 6_4:+9775 None:intergenic
TAAGATTATTTCTGTGCTCC+TGG 0.443224 6_4:-8399 Msa0968680:three_prime_UTR
CATGTTATCGAGGGTCGAAA+TGG 0.443860 6_4:-9544 Msa0968680:CDS
AGCTTCCGACAGCATATTTG+TGG 0.448816 6_4:+9438 None:intergenic
CCCAGAATGAAGCAGCAAAA+CGG 0.458552 6_4:-9073 Msa0968680:CDS
CTATGAGTCTGCGTTAAGGC+TGG 0.470224 6_4:-9608 Msa0968680:CDS
AACAATATATACTATTTCCA+AGG 0.500175 6_4:+8712 None:intergenic
AGGCTGGAACCTGGTTACCT+TGG 0.502118 6_4:-9592 Msa0968680:CDS
GCGTTTAGAGAAGCAAATGA+AGG 0.504166 6_4:-9042 Msa0968680:intron
GTGAGTGGTTTGGGTTGGAC+TGG 0.504570 6_4:-8500 Msa0968680:three_prime_UTR
ATTGAGTGAGTGGTTTGGGT+TGG 0.505428 6_4:-8505 Msa0968680:three_prime_UTR
CTCATTTCACCCTACTGCTA+AGG 0.512262 6_4:+8680 None:intergenic
TTTGAGATGGCCTTAGCAGT+AGG 0.513918 6_4:-8690 Msa0968680:three_prime_UTR
TTGAGCGATATCTTAAAGAC+TGG 0.515465 6_4:-9504 Msa0968680:CDS
TTGAGATGGCCTTAGCAGTA+GGG 0.515605 6_4:-8689 Msa0968680:three_prime_UTR
CGTATTAAACATGGAATGCA+TGG 0.519504 6_4:-8551 Msa0968680:three_prime_UTR
AGTTCTATGAGTCTGCGTTA+AGG 0.520034 6_4:-9612 Msa0968680:CDS
CATTTCGACCCTCGATAACA+TGG 0.525276 6_4:+9545 None:intergenic
GACTGAACTTCTATGAGTAT+TGG 0.530270 6_4:-8758 Msa0968680:exon
AACGAAGGGAAAAGTACCCT+TGG 0.534134 6_4:-8729 Msa0968680:three_prime_UTR
ATTCTCATATATTGAGTGAG+TGG 0.534861 6_4:-8515 Msa0968680:three_prime_UTR
ACCTTGGTGGCCTATGTGGA+AGG 0.536008 6_4:-8653 Msa0968680:three_prime_UTR
CTAAACTTGTGACCAAACAT+TGG 0.539438 6_4:+8350 None:intergenic
TAATTCTGGTGGGAGAGAAA+AGG 0.541741 6_4:-9728 Msa0968680:intron
GGCTGAGCTCCATGTTATCG+AGG 0.543303 6_4:-9554 Msa0968680:CDS
ATGTATTATTAAGCTCAAGC+TGG 0.554436 6_4:-8442 Msa0968680:three_prime_UTR
TGCTGCCACAAATATGCTGT+CGG 0.561575 6_4:-9443 Msa0968680:CDS
AGTGCAGCACCAAGGTAACC+AGG 0.566814 6_4:+9583 None:intergenic
AATTACCTTGGTGGCCTATG+TGG 0.570053 6_4:-8657 Msa0968680:three_prime_UTR
GCTGAGCTCCATGTTATCGA+GGG 0.579949 6_4:-9553 Msa0968680:CDS
AGTATTGGTATCCAAACGAA+GGG 0.582241 6_4:-8743 Msa0968680:three_prime_UTR
CAGAATGTTGAAGTTCAAGC+TGG 0.583895 6_4:-8476 Msa0968680:three_prime_UTR
GAAGACAATGATGTTGAAGA+TGG 0.585143 6_4:-8799 Msa0968680:CDS
AGCAATGCCTCAATCTGCAA+AGG 0.593004 6_4:-9782 Msa0968680:CDS
TCTGCGTTAAGGCTGGAACC+TGG 0.600767 6_4:-9601 Msa0968680:CDS
TGAAATGAGAATTACCTTGG+TGG 0.614718 6_4:-8666 Msa0968680:three_prime_UTR
AATGATGTTGAAGATGGTGA+TGG 0.615312 6_4:-8793 Msa0968680:CDS
TGAGCGATATCTTAAAGACT+GGG 0.616659 6_4:-9503 Msa0968680:CDS
ACCTTCCACATAGGCCACCA+AGG 0.621027 6_4:+8652 None:intergenic
ACAATATATACTATTTCCAA+GGG 0.625101 6_4:+8713 None:intergenic
GAGTATTGGTATCCAAACGA+AGG 0.627840 6_4:-8744 Msa0968680:three_prime_UTR
GGGTGAAATGAGAATTACCT+TGG 0.633665 6_4:-8669 Msa0968680:three_prime_UTR
ATATCGCTCAAGCAGAGACA+CGG 0.641164 6_4:+9516 None:intergenic
TATTATTAAGCTCAAGCTGG+AGG 0.641464 6_4:-8439 Msa0968680:three_prime_UTR
TCTGGTGACCGTATTAAACA+TGG 0.642994 6_4:-8560 Msa0968680:three_prime_UTR
CGGTCACCAGATGCAACAGT+TGG 0.644603 6_4:+8572 None:intergenic
TATCTTACAAATATATAACC+AGG 0.650026 6_4:+8381 None:intergenic
ACAGTGAAAACCTTCCACAT+AGG 0.667609 6_4:+8643 None:intergenic
CAGAATGAAGCAGCAAAACG+GGG 0.672162 6_4:-9071 Msa0968680:CDS
GTGCATGCCAGTAATTCTGG+TGG 0.684548 6_4:-9739 Msa0968680:CDS
TGCATGCCAGTAATTCTGGT+GGG 0.685043 6_4:-9738 Msa0968680:CDS
CCAAAGCTAGTGCAGCACCA+AGG 0.694097 6_4:+9575 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATATAAATATCATAGCAA+CGG - chr6_4:8759-8778 Msa0968680:exon 20.0%
!! ATAAAAACTGTGCAAATAAT+GGG + chr6_4:9066-9085 None:intergenic 20.0%
!! TATAAAAACTGTGCAAATAA+TGG + chr6_4:9067-9086 None:intergenic 20.0%
!!! ATTTTGATTGACAATATTAG+AGG - chr6_4:9122-9141 Msa0968680:intron 20.0%
!! ACAATATATACTATTTCCAA+GGG + chr6_4:9309-9328 None:intergenic 20.0%
!! AACAATATATACTATTTCCA+AGG + chr6_4:9310-9329 None:intergenic 20.0%
!!! TAGTATATATTGTTTTGAGA+TGG - chr6_4:9316-9335 Msa0968680:intron 20.0%
!! TATCTTACAAATATATAACC+AGG + chr6_4:9641-9660 None:intergenic 20.0%
!! AGATATAAATATCATAGCAA+CGG - chr6_4:8759-8778 Msa0968680:exon 20.0%
!! ATAAAAACTGTGCAAATAAT+GGG + chr6_4:9066-9085 None:intergenic 20.0%
!! TATAAAAACTGTGCAAATAA+TGG + chr6_4:9067-9086 None:intergenic 20.0%
!!! ATTTTGATTGACAATATTAG+AGG - chr6_4:9122-9141 Msa0968680:intron 20.0%
!! ACAATATATACTATTTCCAA+GGG + chr6_4:9309-9328 None:intergenic 20.0%
!! AACAATATATACTATTTCCA+AGG + chr6_4:9310-9329 None:intergenic 20.0%
!!! TAGTATATATTGTTTTGAGA+TGG - chr6_4:9316-9335 Msa0968680:intron 20.0%
!! TATCTTACAAATATATAACC+AGG + chr6_4:9641-9660 None:intergenic 20.0%
!!! TTTTATGACAAAGTATCTTC+AGG - chr6_4:8327-8346 Msa0968680:three_prime_UTR 25.0%
! ACTTAATGCATTCATCATAT+AGG - chr6_4:8378-8397 Msa0968680:three_prime_UTR 25.0%
!! ATTTTATAACTCCACCTTTT+GGG + chr6_4:8691-8710 None:intergenic 25.0%
!! TATTTTATAACTCCACCTTT+TGG + chr6_4:8692-8711 None:intergenic 25.0%
!! GATTTTGCAATTTTATATCC+CGG - chr6_4:8736-8755 Msa0968680:three_prime_UTR 25.0%
! TGCTATGATATTTATATCTC+CGG + chr6_4:8758-8777 None:intergenic 25.0%
! TTGACATTTATTATGATGAC+AGG - chr6_4:8916-8935 Msa0968680:intron 25.0%
! TATATGAAAGAATAGATGCA+CGG - chr6_4:9083-9102 Msa0968680:CDS 25.0%
! GATATATGTTAACCAATGTT+TGG - chr6_4:9657-9676 Msa0968680:intron 25.0%
!!! TTTTATGACAAAGTATCTTC+AGG - chr6_4:8327-8346 Msa0968680:three_prime_UTR 25.0%
! ACTTAATGCATTCATCATAT+AGG - chr6_4:8378-8397 Msa0968680:three_prime_UTR 25.0%
!! ATTTTATAACTCCACCTTTT+GGG + chr6_4:8691-8710 None:intergenic 25.0%
!! TATTTTATAACTCCACCTTT+TGG + chr6_4:8692-8711 None:intergenic 25.0%
!! GATTTTGCAATTTTATATCC+CGG - chr6_4:8736-8755 Msa0968680:three_prime_UTR 25.0%
! TGCTATGATATTTATATCTC+CGG + chr6_4:8758-8777 None:intergenic 25.0%
! TTGACATTTATTATGATGAC+AGG - chr6_4:8916-8935 Msa0968680:intron 25.0%
! TATATGAAAGAATAGATGCA+CGG - chr6_4:9083-9102 Msa0968680:CDS 25.0%
! GATATATGTTAACCAATGTT+TGG - chr6_4:9657-9676 Msa0968680:intron 25.0%
!! GCAAAGGCTTTAAAATTAGT+AGG - chr6_4:8253-8272 Msa0968680:three_prime_UTR 30.0%
TCATTCTGTAAACATCTGTT+GGG - chr6_4:8640-8659 Msa0968680:three_prime_UTR 30.0%
! TTTTATAACTCCACCTTTTG+GGG + chr6_4:8690-8709 None:intergenic 30.0%
TTAATTCCGCATCACTTATA+TGG - chr6_4:8714-8733 Msa0968680:three_prime_UTR 30.0%
CAAAATCCATATAAGTGATG+CGG + chr6_4:8723-8742 None:intergenic 30.0%
GCTATGATATTTATATCTCC+GGG + chr6_4:8757-8776 None:intergenic 30.0%
TATAAATATCATAGCAACGG+TGG - chr6_4:8762-8781 Msa0968680:exon 30.0%
ATAAAAGGATTGAGAGAAAG+GGG + chr6_4:8802-8821 None:intergenic 30.0%
CATAAAAGGATTGAGAGAAA+GGG + chr6_4:8803-8822 None:intergenic 30.0%
ATGAAAAATCACAAACACAG+AGG + chr6_4:8892-8911 None:intergenic 30.0%
! TTGTGATTTTGTATCTGTTC+AGG - chr6_4:9168-9187 Msa0968680:intron 30.0%
! TGTGATTTTGTATCTGTTCA+GGG - chr6_4:9169-9188 Msa0968680:intron 30.0%
AGAGTTCACATCTAAAAACA+AGG - chr6_4:9411-9430 Msa0968680:intron 30.0%
CATGCATTCCATGTTTAATA+CGG + chr6_4:9470-9489 None:intergenic 30.0%
ATTCTCATATATTGAGTGAG+TGG - chr6_4:9504-9523 Msa0968680:CDS 30.0%
ATATATTGAGTGAGTGGTTT+GGG - chr6_4:9510-9529 Msa0968680:CDS 30.0%
ATGTATTATTAAGCTCAAGC+TGG - chr6_4:9577-9596 Msa0968680:CDS 30.0%
!! GCAAAGGCTTTAAAATTAGT+AGG - chr6_4:8253-8272 Msa0968680:three_prime_UTR 30.0%
TCATTCTGTAAACATCTGTT+GGG - chr6_4:8640-8659 Msa0968680:three_prime_UTR 30.0%
! TTTTATAACTCCACCTTTTG+GGG + chr6_4:8690-8709 None:intergenic 30.0%
TTAATTCCGCATCACTTATA+TGG - chr6_4:8714-8733 Msa0968680:three_prime_UTR 30.0%
CAAAATCCATATAAGTGATG+CGG + chr6_4:8723-8742 None:intergenic 30.0%
GCTATGATATTTATATCTCC+GGG + chr6_4:8757-8776 None:intergenic 30.0%
TATAAATATCATAGCAACGG+TGG - chr6_4:8762-8781 Msa0968680:exon 30.0%
ATAAAAGGATTGAGAGAAAG+GGG + chr6_4:8802-8821 None:intergenic 30.0%
CATAAAAGGATTGAGAGAAA+GGG + chr6_4:8803-8822 None:intergenic 30.0%
ATGAAAAATCACAAACACAG+AGG + chr6_4:8892-8911 None:intergenic 30.0%
! TTGTGATTTTGTATCTGTTC+AGG - chr6_4:9168-9187 Msa0968680:intron 30.0%
! TGTGATTTTGTATCTGTTCA+GGG - chr6_4:9169-9188 Msa0968680:intron 30.0%
AGAGTTCACATCTAAAAACA+AGG - chr6_4:9411-9430 Msa0968680:intron 30.0%
CATGCATTCCATGTTTAATA+CGG + chr6_4:9470-9489 None:intergenic 30.0%
ATTCTCATATATTGAGTGAG+TGG - chr6_4:9504-9523 Msa0968680:CDS 30.0%
ATATATTGAGTGAGTGGTTT+GGG - chr6_4:9510-9529 Msa0968680:CDS 30.0%
ATGTATTATTAAGCTCAAGC+TGG - chr6_4:9577-9596 Msa0968680:CDS 30.0%
! TTTAAAGCCTTTGCAGATTG+AGG + chr6_4:8247-8266 None:intergenic 35.0%
TTGAGCGATATCTTAAAGAC+TGG - chr6_4:8515-8534 Msa0968680:three_prime_UTR 35.0%
TGAGCGATATCTTAAAGACT+GGG - chr6_4:8516-8535 Msa0968680:three_prime_UTR 35.0%
CTCATTCTGTAAACATCTGT+TGG - chr6_4:8639-8658 Msa0968680:three_prime_UTR 35.0%
CATTCTGTAAACATCTGTTG+GGG - chr6_4:8641-8660 Msa0968680:three_prime_UTR 35.0%
! TTTATAACTCCACCTTTTGG+GGG + chr6_4:8689-8708 None:intergenic 35.0%
GCATAAAAGGATTGAGAGAA+AGG + chr6_4:8804-8823 None:intergenic 35.0%
GAGGAAGTTTACTGCATAAA+AGG + chr6_4:8817-8836 None:intergenic 35.0%
AAAGAATAGATGCACGGTTT+AGG - chr6_4:9089-9108 Msa0968680:intron 35.0%
TCATTGTCTTCATCTTCTTC+AGG + chr6_4:9211-9230 None:intergenic 35.0%
GAAGACAATGATGTTGAAGA+TGG - chr6_4:9220-9239 Msa0968680:intron 35.0%
AATGATGTTGAAGATGGTGA+TGG - chr6_4:9226-9245 Msa0968680:intron 35.0%
GACTGAACTTCTATGAGTAT+TGG - chr6_4:9261-9280 Msa0968680:intron 35.0%
!! AGTATTGGTATCCAAACGAA+GGG - chr6_4:9276-9295 Msa0968680:intron 35.0%
TGAAATGAGAATTACCTTGG+TGG - chr6_4:9353-9372 Msa0968680:intron 35.0%
CGTATTAAACATGGAATGCA+TGG - chr6_4:9468-9487 Msa0968680:CDS 35.0%
CATATATTGAGTGAGTGGTT+TGG - chr6_4:9509-9528 Msa0968680:CDS 35.0%
TATTATTAAGCTCAAGCTGG+AGG - chr6_4:9580-9599 Msa0968680:CDS 35.0%
!! TAAGATTATTTCTGTGCTCC+TGG - chr6_4:9620-9639 Msa0968680:CDS 35.0%
CTAAACTTGTGACCAAACAT+TGG + chr6_4:9672-9691 None:intergenic 35.0%
! TTTAAAGCCTTTGCAGATTG+AGG + chr6_4:8247-8266 None:intergenic 35.0%
TTGAGCGATATCTTAAAGAC+TGG - chr6_4:8515-8534 Msa0968680:three_prime_UTR 35.0%
TGAGCGATATCTTAAAGACT+GGG - chr6_4:8516-8535 Msa0968680:three_prime_UTR 35.0%
CTCATTCTGTAAACATCTGT+TGG - chr6_4:8639-8658 Msa0968680:three_prime_UTR 35.0%
CATTCTGTAAACATCTGTTG+GGG - chr6_4:8641-8660 Msa0968680:three_prime_UTR 35.0%
! TTTATAACTCCACCTTTTGG+GGG + chr6_4:8689-8708 None:intergenic 35.0%
GCATAAAAGGATTGAGAGAA+AGG + chr6_4:8804-8823 None:intergenic 35.0%
GAGGAAGTTTACTGCATAAA+AGG + chr6_4:8817-8836 None:intergenic 35.0%
AAAGAATAGATGCACGGTTT+AGG - chr6_4:9089-9108 Msa0968680:intron 35.0%
TCATTGTCTTCATCTTCTTC+AGG + chr6_4:9211-9230 None:intergenic 35.0%
GAAGACAATGATGTTGAAGA+TGG - chr6_4:9220-9239 Msa0968680:intron 35.0%
AATGATGTTGAAGATGGTGA+TGG - chr6_4:9226-9245 Msa0968680:intron 35.0%
GACTGAACTTCTATGAGTAT+TGG - chr6_4:9261-9280 Msa0968680:intron 35.0%
!! AGTATTGGTATCCAAACGAA+GGG - chr6_4:9276-9295 Msa0968680:intron 35.0%
TGAAATGAGAATTACCTTGG+TGG - chr6_4:9353-9372 Msa0968680:intron 35.0%
CGTATTAAACATGGAATGCA+TGG - chr6_4:9468-9487 Msa0968680:CDS 35.0%
CATATATTGAGTGAGTGGTT+TGG - chr6_4:9509-9528 Msa0968680:CDS 35.0%
TATTATTAAGCTCAAGCTGG+AGG - chr6_4:9580-9599 Msa0968680:CDS 35.0%
!! TAAGATTATTTCTGTGCTCC+TGG - chr6_4:9620-9639 Msa0968680:CDS 35.0%
CTAAACTTGTGACCAAACAT+TGG + chr6_4:9672-9691 None:intergenic 35.0%
TAATTCTGGTGGGAGAGAAA+AGG - chr6_4:8291-8310 Msa0968680:three_prime_UTR 40.0%
AGTTCTATGAGTCTGCGTTA+AGG - chr6_4:8407-8426 Msa0968680:three_prime_UTR 40.0%
! TTATAACTCCACCTTTTGGG+GGG + chr6_4:8688-8707 None:intergenic 40.0%
! TCGATCGATTCTTAAATGCG+AGG + chr6_4:8836-8855 None:intergenic 40.0%
! AAACACAGAGGCATATCACA+TGG + chr6_4:8880-8899 None:intergenic 40.0%
GCGTTTAGAGAAGCAAATGA+AGG - chr6_4:8977-8996 Msa0968680:intron 40.0%
!! GAGTATTGGTATCCAAACGA+AGG - chr6_4:9275-9294 Msa0968680:intron 40.0%
GGGTGAAATGAGAATTACCT+TGG - chr6_4:9350-9369 Msa0968680:intron 40.0%
ACAGTGAAAACCTTCCACAT+AGG + chr6_4:9379-9398 None:intergenic 40.0%
TCTGGTGACCGTATTAAACA+TGG - chr6_4:9459-9478 Msa0968680:CDS 40.0%
CAGAATGTTGAAGTTCAAGC+TGG - chr6_4:9543-9562 Msa0968680:CDS 40.0%
TAATTCTGGTGGGAGAGAAA+AGG - chr6_4:8291-8310 Msa0968680:three_prime_UTR 40.0%
AGTTCTATGAGTCTGCGTTA+AGG - chr6_4:8407-8426 Msa0968680:three_prime_UTR 40.0%
! TTATAACTCCACCTTTTGGG+GGG + chr6_4:8688-8707 None:intergenic 40.0%
! TCGATCGATTCTTAAATGCG+AGG + chr6_4:8836-8855 None:intergenic 40.0%
! AAACACAGAGGCATATCACA+TGG + chr6_4:8880-8899 None:intergenic 40.0%
GCGTTTAGAGAAGCAAATGA+AGG - chr6_4:8977-8996 Msa0968680:intron 40.0%
!! GAGTATTGGTATCCAAACGA+AGG - chr6_4:9275-9294 Msa0968680:intron 40.0%
GGGTGAAATGAGAATTACCT+TGG - chr6_4:9350-9369 Msa0968680:intron 40.0%
ACAGTGAAAACCTTCCACAT+AGG + chr6_4:9379-9398 None:intergenic 40.0%
TCTGGTGACCGTATTAAACA+TGG - chr6_4:9459-9478 Msa0968680:CDS 40.0%
CAGAATGTTGAAGTTCAAGC+TGG - chr6_4:9543-9562 Msa0968680:CDS 40.0%
AGCAATGCCTCAATCTGCAA+AGG - chr6_4:8237-8256 Msa0968680:three_prime_UTR 45.0%
GATGTGCATGCCAGTAATTC+TGG - chr6_4:8277-8296 Msa0968680:three_prime_UTR 45.0%
TGCATGCCAGTAATTCTGGT+GGG - chr6_4:8281-8300 Msa0968680:three_prime_UTR 45.0%
TTCTCTCCCACCAGAATTAC+TGG + chr6_4:8290-8309 None:intergenic 45.0%
CATTTCGACCCTCGATAACA+TGG + chr6_4:8477-8496 None:intergenic 45.0%
CATGTTATCGAGGGTCGAAA+TGG - chr6_4:8475-8494 Msa0968680:three_prime_UTR 45.0%
ATATCGCTCAAGCAGAGACA+CGG + chr6_4:8506-8525 None:intergenic 45.0%
TGCTGCCACAAATATGCTGT+CGG - chr6_4:8576-8595 Msa0968680:three_prime_UTR 45.0%
AGCTTCCGACAGCATATTTG+TGG + chr6_4:8584-8603 None:intergenic 45.0%
! GGAAGCTTTGTCGCATTATC+AGG - chr6_4:8597-8616 Msa0968680:three_prime_UTR 45.0%
CGCATTATCAGGCTGCATTA+AGG - chr6_4:8608-8627 Msa0968680:three_prime_UTR 45.0%
!! TATAACTCCACCTTTTGGGG+GGG + chr6_4:8687-8706 None:intergenic 45.0%
TGGATATCCCCTGACTACAA+GGG + chr6_4:8860-8879 None:intergenic 45.0%
ATGGATATCCCCTGACTACA+AGG + chr6_4:8861-8880 None:intergenic 45.0%
!! GTTTTGCTGCTTCATTCTGG+GGG + chr6_4:8947-8966 None:intergenic 45.0%
!! CGTTTTGCTGCTTCATTCTG+GGG + chr6_4:8948-8967 None:intergenic 45.0%
!! CCGTTTTGCTGCTTCATTCT+GGG + chr6_4:8949-8968 None:intergenic 45.0%
CCCAGAATGAAGCAGCAAAA+CGG - chr6_4:8946-8965 Msa0968680:intron 45.0%
CCAGAATGAAGCAGCAAAAC+GGG - chr6_4:8947-8966 Msa0968680:intron 45.0%
CAGAATGAAGCAGCAAAACG+GGG - chr6_4:8948-8967 Msa0968680:intron 45.0%
TCATCTTCTTCAGGTGCATC+AGG + chr6_4:9202-9221 None:intergenic 45.0%
!! AGGGTACTTTTCCCTTCGTT+TGG + chr6_4:9290-9309 None:intergenic 45.0%
!! AACGAAGGGAAAAGTACCCT+TGG - chr6_4:9290-9309 Msa0968680:intron 45.0%
! TTTGAGATGGCCTTAGCAGT+AGG - chr6_4:9329-9348 Msa0968680:intron 45.0%
! TTGAGATGGCCTTAGCAGTA+GGG - chr6_4:9330-9349 Msa0968680:intron 45.0%
CTCATTTCACCCTACTGCTA+AGG + chr6_4:9342-9361 None:intergenic 45.0%
! AATTACCTTGGTGGCCTATG+TGG - chr6_4:9362-9381 Msa0968680:intron 45.0%
TTATCGCCAACTGTTGCATC+TGG - chr6_4:9441-9460 Msa0968680:CDS 45.0%
! ATTGAGTGAGTGGTTTGGGT+TGG - chr6_4:9514-9533 Msa0968680:CDS 45.0%
AGCAATGCCTCAATCTGCAA+AGG - chr6_4:8237-8256 Msa0968680:three_prime_UTR 45.0%
GATGTGCATGCCAGTAATTC+TGG - chr6_4:8277-8296 Msa0968680:three_prime_UTR 45.0%
TGCATGCCAGTAATTCTGGT+GGG - chr6_4:8281-8300 Msa0968680:three_prime_UTR 45.0%
TTCTCTCCCACCAGAATTAC+TGG + chr6_4:8290-8309 None:intergenic 45.0%
CATTTCGACCCTCGATAACA+TGG + chr6_4:8477-8496 None:intergenic 45.0%
CATGTTATCGAGGGTCGAAA+TGG - chr6_4:8475-8494 Msa0968680:three_prime_UTR 45.0%
ATATCGCTCAAGCAGAGACA+CGG + chr6_4:8506-8525 None:intergenic 45.0%
TGCTGCCACAAATATGCTGT+CGG - chr6_4:8576-8595 Msa0968680:three_prime_UTR 45.0%
AGCTTCCGACAGCATATTTG+TGG + chr6_4:8584-8603 None:intergenic 45.0%
! GGAAGCTTTGTCGCATTATC+AGG - chr6_4:8597-8616 Msa0968680:three_prime_UTR 45.0%
CGCATTATCAGGCTGCATTA+AGG - chr6_4:8608-8627 Msa0968680:three_prime_UTR 45.0%
!! TATAACTCCACCTTTTGGGG+GGG + chr6_4:8687-8706 None:intergenic 45.0%
TGGATATCCCCTGACTACAA+GGG + chr6_4:8860-8879 None:intergenic 45.0%
ATGGATATCCCCTGACTACA+AGG + chr6_4:8861-8880 None:intergenic 45.0%
!! GTTTTGCTGCTTCATTCTGG+GGG + chr6_4:8947-8966 None:intergenic 45.0%
!! CGTTTTGCTGCTTCATTCTG+GGG + chr6_4:8948-8967 None:intergenic 45.0%
!! CCGTTTTGCTGCTTCATTCT+GGG + chr6_4:8949-8968 None:intergenic 45.0%
CCCAGAATGAAGCAGCAAAA+CGG - chr6_4:8946-8965 Msa0968680:intron 45.0%
CCAGAATGAAGCAGCAAAAC+GGG - chr6_4:8947-8966 Msa0968680:intron 45.0%
CAGAATGAAGCAGCAAAACG+GGG - chr6_4:8948-8967 Msa0968680:intron 45.0%
TCATCTTCTTCAGGTGCATC+AGG + chr6_4:9202-9221 None:intergenic 45.0%
!! AGGGTACTTTTCCCTTCGTT+TGG + chr6_4:9290-9309 None:intergenic 45.0%
!! AACGAAGGGAAAAGTACCCT+TGG - chr6_4:9290-9309 Msa0968680:intron 45.0%
! TTTGAGATGGCCTTAGCAGT+AGG - chr6_4:9329-9348 Msa0968680:intron 45.0%
! TTGAGATGGCCTTAGCAGTA+GGG - chr6_4:9330-9349 Msa0968680:intron 45.0%
CTCATTTCACCCTACTGCTA+AGG + chr6_4:9342-9361 None:intergenic 45.0%
! AATTACCTTGGTGGCCTATG+TGG - chr6_4:9362-9381 Msa0968680:intron 45.0%
TTATCGCCAACTGTTGCATC+TGG - chr6_4:9441-9460 Msa0968680:CDS 45.0%
! ATTGAGTGAGTGGTTTGGGT+TGG - chr6_4:9514-9533 Msa0968680:CDS 45.0%
GTGCATGCCAGTAATTCTGG+TGG - chr6_4:8280-8299 Msa0968680:three_prime_UTR 50.0%
CTATGAGTCTGCGTTAAGGC+TGG - chr6_4:8411-8430 Msa0968680:three_prime_UTR 50.0%
GCTGAGCTCCATGTTATCGA+GGG - chr6_4:8466-8485 Msa0968680:three_prime_UTR 50.0%
!! ATAACTCCACCTTTTGGGGG+GGG + chr6_4:8686-8705 None:intergenic 50.0%
TCGATCGAACCCTTGTAGTC+AGG - chr6_4:8848-8867 Msa0968680:intron 50.0%
CGATCGAACCCTTGTAGTCA+GGG - chr6_4:8849-8868 Msa0968680:intron 50.0%
GATCGAACCCTTGTAGTCAG+GGG - chr6_4:8850-8869 Msa0968680:intron 50.0%
!! CCCGTTTTGCTGCTTCATTC+TGG + chr6_4:8950-8969 None:intergenic 50.0%
GTGCATGCCAGTAATTCTGG+TGG - chr6_4:8280-8299 Msa0968680:three_prime_UTR 50.0%
CTATGAGTCTGCGTTAAGGC+TGG - chr6_4:8411-8430 Msa0968680:three_prime_UTR 50.0%
GCTGAGCTCCATGTTATCGA+GGG - chr6_4:8466-8485 Msa0968680:three_prime_UTR 50.0%
!! ATAACTCCACCTTTTGGGGG+GGG + chr6_4:8686-8705 None:intergenic 50.0%
TCGATCGAACCCTTGTAGTC+AGG - chr6_4:8848-8867 Msa0968680:intron 50.0%
CGATCGAACCCTTGTAGTCA+GGG - chr6_4:8849-8868 Msa0968680:intron 50.0%
GATCGAACCCTTGTAGTCAG+GGG - chr6_4:8850-8869 Msa0968680:intron 50.0%
!! CCCGTTTTGCTGCTTCATTC+TGG + chr6_4:8950-8969 None:intergenic 50.0%
TCTGCGTTAAGGCTGGAACC+TGG - chr6_4:8418-8437 Msa0968680:three_prime_UTR 55.0%
AGGCTGGAACCTGGTTACCT+TGG - chr6_4:8427-8446 Msa0968680:three_prime_UTR 55.0%
AGTGCAGCACCAAGGTAACC+AGG + chr6_4:8439-8458 None:intergenic 55.0%
CCAAAGCTAGTGCAGCACCA+AGG + chr6_4:8447-8466 None:intergenic 55.0%
!! CCTTGGTGCTGCACTAGCTT+TGG - chr6_4:8444-8463 Msa0968680:three_prime_UTR 55.0%
GGCTGAGCTCCATGTTATCG+AGG - chr6_4:8465-8484 Msa0968680:three_prime_UTR 55.0%
!! TAACTCCACCTTTTGGGGGG+GGG + chr6_4:8685-8704 None:intergenic 55.0%
! ACCTTGGTGGCCTATGTGGA+AGG - chr6_4:9366-9385 Msa0968680:intron 55.0%
ACCTTCCACATAGGCCACCA+AGG + chr6_4:9370-9389 None:intergenic 55.0%
CGGTCACCAGATGCAACAGT+TGG + chr6_4:9450-9469 None:intergenic 55.0%
!! GTGAGTGGTTTGGGTTGGAC+TGG - chr6_4:9519-9538 Msa0968680:CDS 55.0%
TCTGCGTTAAGGCTGGAACC+TGG - chr6_4:8418-8437 Msa0968680:three_prime_UTR 55.0%
AGGCTGGAACCTGGTTACCT+TGG - chr6_4:8427-8446 Msa0968680:three_prime_UTR 55.0%
AGTGCAGCACCAAGGTAACC+AGG + chr6_4:8439-8458 None:intergenic 55.0%
CCAAAGCTAGTGCAGCACCA+AGG + chr6_4:8447-8466 None:intergenic 55.0%
!! CCTTGGTGCTGCACTAGCTT+TGG - chr6_4:8444-8463 Msa0968680:three_prime_UTR 55.0%
GGCTGAGCTCCATGTTATCG+AGG - chr6_4:8465-8484 Msa0968680:three_prime_UTR 55.0%
!! TAACTCCACCTTTTGGGGGG+GGG + chr6_4:8685-8704 None:intergenic 55.0%
! ACCTTGGTGGCCTATGTGGA+AGG - chr6_4:9366-9385 Msa0968680:intron 55.0%
ACCTTCCACATAGGCCACCA+AGG + chr6_4:9370-9389 None:intergenic 55.0%
CGGTCACCAGATGCAACAGT+TGG + chr6_4:9450-9469 None:intergenic 55.0%
!! GTGAGTGGTTTGGGTTGGAC+TGG - chr6_4:9519-9538 Msa0968680:CDS 55.0%
!! AACTCCACCTTTTGGGGGGG+GGG + chr6_4:8684-8703 None:intergenic 60.0%
!! AACTCCACCTTTTGGGGGGG+GGG + chr6_4:8684-8703 None:intergenic 60.0%
TTTACCCCCCCCCCCCCAAA+AGG - chr6_4:8674-8693 Msa0968680:three_prime_UTR 65.0%
!! ACTCCACCTTTTGGGGGGGG+GGG + chr6_4:8683-8702 None:intergenic 65.0%
TTTACCCCCCCCCCCCCAAA+AGG - chr6_4:8674-8693 Msa0968680:three_prime_UTR 65.0%
!! ACTCCACCTTTTGGGGGGGG+GGG + chr6_4:8683-8702 None:intergenic 65.0%
!! TCCACCTTTTGGGGGGGGGG+GGG + chr6_4:8681-8700 None:intergenic 70.0%
!! CTCCACCTTTTGGGGGGGGG+GGG + chr6_4:8682-8701 None:intergenic 70.0%
!! TCCACCTTTTGGGGGGGGGG+GGG + chr6_4:8681-8700 None:intergenic 70.0%
!! CTCCACCTTTTGGGGGGGGG+GGG + chr6_4:8682-8701 None:intergenic 70.0%
ACCCCCCCCCCCCCAAAAGG+TGG - chr6_4:8677-8696 Msa0968680:three_prime_UTR 75.0%
ACCCCCCCCCCCCCAAAAGG+TGG - chr6_4:8677-8696 Msa0968680:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 8232 9809 8232 ID=Msa0968680;Name=Msa0968680
chr6_4 mRNA 8232 9809 8232 ID=Msa0968680-mRNA-1;Parent=Msa0968680;Name=Msa0968680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.66|0.5|0.75|1|1|4|533|152
chr6_4 exon 8232 8851 8232 ID=Msa0968680-mRNA-1:exon:38;Parent=Msa0968680-mRNA-1
chr6_4 exon 9043 9103 9043 ID=Msa0968680-mRNA-1:exon:37;Parent=Msa0968680-mRNA-1
chr6_4 exon 9412 9641 9412 ID=Msa0968680-mRNA-1:exon:36;Parent=Msa0968680-mRNA-1
chr6_4 exon 9729 9809 9729 ID=Msa0968680-mRNA-1:exon:35;Parent=Msa0968680-mRNA-1
chr6_4 CDS 9729 9809 9729 ID=Msa0968680-mRNA-1:cds;Parent=Msa0968680-mRNA-1
chr6_4 CDS 9412 9641 9412 ID=Msa0968680-mRNA-1:cds;Parent=Msa0968680-mRNA-1
chr6_4 CDS 9043 9103 9043 ID=Msa0968680-mRNA-1:cds;Parent=Msa0968680-mRNA-1
chr6_4 CDS 8765 8851 8765 ID=Msa0968680-mRNA-1:cds;Parent=Msa0968680-mRNA-1
chr6_4 three_prime_UTR 8232 8764 8232 ID=Msa0968680-mRNA-1:three_prime_utr;Parent=Msa0968680-mRNA-1
Gene Sequence

>Msa0968680

ATGAAAGCAATGCCTCAATCTGCAAAGGCTTTAAAATTAGTAGGTGATGTGCATGCCAGTAATTCTGGTGGGAGAGAAAAGGCGAAAAAGTTCTATGAGTCTGCGTTAAGGCTGGAACCTGGTTACCTTGGTGCTGCACTAGCTTTGGCTGAGCTCCATGTTATCGAGGGTCGAAATGGAGATGCCGTGTCTCTGCTTGAGCGATATCTTAAAGACTGGGCTGATGACTCTCTTCATGTGAAATTAGCACAAGTTTTTGCTGCCACAAATATGCTGTCGGAAGCTTTGTCGCATTATCAGGCTGCATTAAGGTTAAACCCCCAGAATGAAGCAGCAAAACGGGGTTTAGAGCGTTTAGAGAAGCAAATGAAGGGTGTTGATCCTGATGCACCTGAAGAAGATGAAGACAATGATGTTGAAGATGGTGATGGAGATCAAGACGAGACTGAACTTCTATGA

Protein sequence

>Msa0968680

MKAMPQSAKALKLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLSEALSHYQAALRLNPQNEAAKRGLERLEKQMKGVDPDAPEEDEDNDVEDGDGDQDETELL*