AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1444310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444310 MtrunA17_Chr8g0349051 100.000 82 0 0 1 82 1 82 4.30e-50 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444310 AT2G45860.1 65.432 81 25 1 1 81 1 78 6.39e-11 53.5

Find 20 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCAAATTCATACAAATT+AGG 0.156463 tig0030688:+16963 None:intergenic
GGGTGGTGGAAGTGGATTTA+AGG 0.234381 tig0030688:+18477 Msa1444310:CDS
TCCCAAATTCATACAAATTA+GGG 0.240413 tig0030688:+16964 None:intergenic
GGAAAATTTGTTTAGGTTGA+TGG 0.363350 tig0030688:+18436 Msa1444310:intron
TTCGTGTTGTCTCTTTCTCT+TGG 0.387601 tig0030688:-17061 None:intergenic
GCAATGGAGCTCGACAAATA+AGG 0.389446 tig0030688:+18559 Msa1444310:CDS
GAGCTGACAACCTGGTCTTC+AGG 0.408279 tig0030688:-18531 None:intergenic
TGTTAAGTTATTTGACTATG+AGG 0.436028 tig0030688:+18682 Msa1444310:three_prime_UTR
AGCTAAAGCTGCGCAGGCAA+TGG 0.436809 tig0030688:+18543 Msa1444310:CDS
ATCTATTAATTTCACTGCAT+CGG 0.452439 tig0030688:-18636 None:intergenic
GTCGAAAGCTAAAGCTGCGC+AGG 0.513870 tig0030688:+18537 Msa1444310:CDS
TAATTTCACTGCATCGGCAT+CGG 0.526109 tig0030688:-18630 None:intergenic
TGGTGGAAGTGGATTTAAGG+TGG 0.555596 tig0030688:+18480 Msa1444310:CDS
GGTGGAAGTGGATTTAAGGT+GGG 0.573086 tig0030688:+18481 Msa1444310:CDS
ACAAATAAGGCGGCATTGTG+AGG 0.576172 tig0030688:+18572 Msa1444310:exon
GTTGTCTCTTTCTCTTGGCG+AGG 0.588958 tig0030688:-17056 None:intergenic
TTTCGACAGAGCTGACAACC+TGG 0.591148 tig0030688:-18539 None:intergenic
TAGATGACAGAGTTGTTCTG+AGG 0.617871 tig0030688:+18636 Msa1444310:three_prime_UTR
GAAAGAAATACCTGAAGACC+AGG 0.620236 tig0030688:+18503 Msa1444310:CDS
ATGGAGCTCGACAAATAAGG+CGG 0.701989 tig0030688:+18562 Msa1444310:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGATAATATATGATTT+TGG + tig0030688:17288-17307 Msa1444310:intron 10.0%
!!! AAAAGATAATATATGATTTT+GGG + tig0030688:17289-17308 Msa1444310:intron 10.0%
!!! TTTTGTTTTTTAAATGATAT+TGG + tig0030688:17474-17493 Msa1444310:intron 10.0%
!!! AAAAAGATAATATATGATTT+TGG + tig0030688:17288-17307 Msa1444310:intron 10.0%
!!! AAAAGATAATATATGATTTT+GGG + tig0030688:17289-17308 Msa1444310:intron 10.0%
!!! TTTTGTTTTTTAAATGATAT+TGG + tig0030688:17474-17493 Msa1444310:intron 10.0%
!! ATGTGAAAAATTAGAAAATT+AGG - tig0030688:17137-17156 None:intergenic 15.0%
!!! ATTAACTCTAAAACAAATAT+AGG - tig0030688:17513-17532 None:intergenic 15.0%
!!! TTTTATATTATTGAGATTGT+GGG + tig0030688:17560-17579 Msa1444310:intron 15.0%
!! ATCTATGAAAATAAAAGTAA+TGG + tig0030688:17771-17790 Msa1444310:intron 15.0%
!! ATGTGAAAAATTAGAAAATT+AGG - tig0030688:17137-17156 None:intergenic 15.0%
!!! ATTAACTCTAAAACAAATAT+AGG - tig0030688:17513-17532 None:intergenic 15.0%
!!! TTTTATATTATTGAGATTGT+GGG + tig0030688:17560-17579 Msa1444310:intron 15.0%
!! ATCTATGAAAATAAAAGTAA+TGG + tig0030688:17771-17790 Msa1444310:intron 15.0%
!!! AGAAAATTAGGTTTGAAATT+GGG - tig0030688:17125-17144 None:intergenic 20.0%
!!! TAGAAAATTAGGTTTGAAAT+TGG - tig0030688:17126-17145 None:intergenic 20.0%
!! AATATAAAAGTTCACAACTT+TGG - tig0030688:17549-17568 None:intergenic 20.0%
!!! CTTTTATATTATTGAGATTG+TGG + tig0030688:17559-17578 Msa1444310:intron 20.0%
!! AAATACCAAAAAGTAGATTA+TGG - tig0030688:17590-17609 None:intergenic 20.0%
!! TATTTATAGAGTAGGTTTAA+AGG + tig0030688:18038-18057 Msa1444310:intron 20.0%
!! TGGATATTAGATTTAAACTT+TGG + tig0030688:18312-18331 Msa1444310:intron 20.0%
!! TATTAGATTTAAACTTTGGA+AGG + tig0030688:18316-18335 Msa1444310:intron 20.0%
!!! TTTTGTTGGAAAATTTGTTT+AGG + tig0030688:18429-18448 Msa1444310:intron 20.0%
!!! AGAAAATTAGGTTTGAAATT+GGG - tig0030688:17125-17144 None:intergenic 20.0%
!!! TAGAAAATTAGGTTTGAAAT+TGG - tig0030688:17126-17145 None:intergenic 20.0%
!! AATATAAAAGTTCACAACTT+TGG - tig0030688:17549-17568 None:intergenic 20.0%
!!! CTTTTATATTATTGAGATTG+TGG + tig0030688:17559-17578 Msa1444310:intron 20.0%
!! AAATACCAAAAAGTAGATTA+TGG - tig0030688:17590-17609 None:intergenic 20.0%
!! TATTTATAGAGTAGGTTTAA+AGG + tig0030688:18038-18057 Msa1444310:intron 20.0%
!! TGGATATTAGATTTAAACTT+TGG + tig0030688:18312-18331 Msa1444310:intron 20.0%
!! TATTAGATTTAAACTTTGGA+AGG + tig0030688:18316-18335 Msa1444310:intron 20.0%
!!! TTTTGTTGGAAAATTTGTTT+AGG + tig0030688:18429-18448 Msa1444310:intron 20.0%
!! AAAATTAGGTTTGAAATTGG+GGG - tig0030688:17123-17142 None:intergenic 25.0%
!! GAAAATTAGGTTTGAAATTG+GGG - tig0030688:17124-17143 None:intergenic 25.0%
!! TTTTTGCAATGATTTCTTTC+AGG + tig0030688:17167-17186 Msa1444310:intron 25.0%
!! TTGTGAACTTTTTGTTCAAT+GGG + tig0030688:17357-17376 Msa1444310:intron 25.0%
!! TTTTTGTTCAATGGGATAAT+GGG + tig0030688:17365-17384 Msa1444310:intron 25.0%
!!! GTTAGTTGATGAACATAAAT+TGG + tig0030688:17445-17464 Msa1444310:intron 25.0%
! TTAAATGATATTGGTGAGTT+TGG + tig0030688:17483-17502 Msa1444310:intron 25.0%
! TAAATGATATTGGTGAGTTT+GGG + tig0030688:17484-17503 Msa1444310:intron 25.0%
!! CAAATTCAACACCTAATTTT+CGG - tig0030688:17646-17665 None:intergenic 25.0%
! ATCTATTAATTTCACTGCAT+CGG - tig0030688:18621-18640 None:intergenic 25.0%
! TGTTAAGTTATTTGACTATG+AGG + tig0030688:18682-18701 Msa1444310:three_prime_UTR 25.0%
!! AAAATTAGGTTTGAAATTGG+GGG - tig0030688:17123-17142 None:intergenic 25.0%
!! GAAAATTAGGTTTGAAATTG+GGG - tig0030688:17124-17143 None:intergenic 25.0%
!! TTTTTGCAATGATTTCTTTC+AGG + tig0030688:17167-17186 Msa1444310:intron 25.0%
!! TTGTGAACTTTTTGTTCAAT+GGG + tig0030688:17357-17376 Msa1444310:intron 25.0%
!! TTTTTGTTCAATGGGATAAT+GGG + tig0030688:17365-17384 Msa1444310:intron 25.0%
!!! GTTAGTTGATGAACATAAAT+TGG + tig0030688:17445-17464 Msa1444310:intron 25.0%
! TTAAATGATATTGGTGAGTT+TGG + tig0030688:17483-17502 Msa1444310:intron 25.0%
! TAAATGATATTGGTGAGTTT+GGG + tig0030688:17484-17503 Msa1444310:intron 25.0%
!! CAAATTCAACACCTAATTTT+CGG - tig0030688:17646-17665 None:intergenic 25.0%
! ATCTATTAATTTCACTGCAT+CGG - tig0030688:18621-18640 None:intergenic 25.0%
! TGTTAAGTTATTTGACTATG+AGG + tig0030688:18682-18701 Msa1444310:three_prime_UTR 25.0%
GAACAAAAAGTTCACAACTT+TGG - tig0030688:17354-17373 None:intergenic 30.0%
! GTTGTGAACTTTTTGTTCAA+TGG + tig0030688:17356-17375 Msa1444310:intron 30.0%
! CTTTTTGTTCAATGGGATAA+TGG + tig0030688:17364-17383 Msa1444310:intron 30.0%
!! GTCAACCATAATCTACTTTT+TGG + tig0030688:17582-17601 Msa1444310:intron 30.0%
GTTTATAGTAGCCGAAAATT+AGG + tig0030688:17632-17651 Msa1444310:intron 30.0%
AGTGGAATGATAAGTATATG+TGG + tig0030688:17976-17995 Msa1444310:intron 30.0%
GTGGAATGATAAGTATATGT+GGG + tig0030688:17977-17996 Msa1444310:intron 30.0%
ACTCTATAAATACTAGCTCA+TGG - tig0030688:18030-18049 None:intergenic 30.0%
TGAGCTAGTATTTATAGAGT+AGG + tig0030688:18030-18049 Msa1444310:intron 30.0%
! TAGAGTAGGTTTAAAGGTTT+TGG + tig0030688:18044-18063 Msa1444310:intron 30.0%
!! GATTGAAAGTGTTCTGATAT+GGG - tig0030688:18233-18252 None:intergenic 30.0%
!! AGATTGAAAGTGTTCTGATA+TGG - tig0030688:18234-18253 None:intergenic 30.0%
AGAACACTTTCAATCTAAAG+TGG + tig0030688:18238-18257 Msa1444310:intron 30.0%
ACTAAAAGTAGAGATTAGAG+AGG + tig0030688:18342-18361 Msa1444310:intron 30.0%
!! GGAAAATTTGTTTAGGTTGA+TGG + tig0030688:18436-18455 Msa1444310:intron 30.0%
GAACAAAAAGTTCACAACTT+TGG - tig0030688:17354-17373 None:intergenic 30.0%
! GTTGTGAACTTTTTGTTCAA+TGG + tig0030688:17356-17375 Msa1444310:intron 30.0%
! CTTTTTGTTCAATGGGATAA+TGG + tig0030688:17364-17383 Msa1444310:intron 30.0%
!! GTCAACCATAATCTACTTTT+TGG + tig0030688:17582-17601 Msa1444310:intron 30.0%
GTTTATAGTAGCCGAAAATT+AGG + tig0030688:17632-17651 Msa1444310:intron 30.0%
AGTGGAATGATAAGTATATG+TGG + tig0030688:17976-17995 Msa1444310:intron 30.0%
GTGGAATGATAAGTATATGT+GGG + tig0030688:17977-17996 Msa1444310:intron 30.0%
ACTCTATAAATACTAGCTCA+TGG - tig0030688:18030-18049 None:intergenic 30.0%
TGAGCTAGTATTTATAGAGT+AGG + tig0030688:18030-18049 Msa1444310:intron 30.0%
! TAGAGTAGGTTTAAAGGTTT+TGG + tig0030688:18044-18063 Msa1444310:intron 30.0%
!! GATTGAAAGTGTTCTGATAT+GGG - tig0030688:18233-18252 None:intergenic 30.0%
!! AGATTGAAAGTGTTCTGATA+TGG - tig0030688:18234-18253 None:intergenic 30.0%
AGAACACTTTCAATCTAAAG+TGG + tig0030688:18238-18257 Msa1444310:intron 30.0%
ACTAAAAGTAGAGATTAGAG+AGG + tig0030688:18342-18361 Msa1444310:intron 30.0%
!! GGAAAATTTGTTTAGGTTGA+TGG + tig0030688:18436-18455 Msa1444310:intron 30.0%
TTCAGGAGAAAAACTTGAGA+AGG + tig0030688:17184-17203 Msa1444310:intron 35.0%
!!! TCATCTTGTTTTTCTTCGCT+TGG - tig0030688:17229-17248 None:intergenic 35.0%
!! CTAACTTTTCAGGGAGATTA+TGG - tig0030688:17395-17414 None:intergenic 35.0%
! CAAACACTGCTAACTTTTCA+GGG - tig0030688:17404-17423 None:intergenic 35.0%
! TCAAACACTGCTAACTTTTC+AGG - tig0030688:17405-17424 None:intergenic 35.0%
AATACTAGCTCATGGACATT+AGG - tig0030688:18022-18041 None:intergenic 35.0%
! ACACTTTCAATCTAAAGTGG+CGG + tig0030688:18241-18260 Msa1444310:intron 35.0%
CAATCACACGCATAATATGT+AGG - tig0030688:18280-18299 None:intergenic 35.0%
TGTGATTGTGCAATAAAAGC+TGG + tig0030688:18292-18311 Msa1444310:intron 35.0%
GTGTGTATCATGAGGATTAA+TGG + tig0030688:18392-18411 Msa1444310:intron 35.0%
CATGAGGATTAATGGTTGTA+TGG + tig0030688:18400-18419 Msa1444310:intron 35.0%
GGATTAATGGTTGTATGGTT+CGG + tig0030688:18405-18424 Msa1444310:intron 35.0%
!!! TTGTATGGTTCGGTTTTTGT+TGG + tig0030688:18415-18434 Msa1444310:intron 35.0%
! TGGTAGTGACAAGAAAAAGA+AGG + tig0030688:18456-18475 Msa1444310:CDS 35.0%
GGTAGTGACAAGAAAAAGAA+GGG + tig0030688:18457-18476 Msa1444310:CDS 35.0%
TTCAGGAGAAAAACTTGAGA+AGG + tig0030688:17184-17203 Msa1444310:intron 35.0%
!!! TCATCTTGTTTTTCTTCGCT+TGG - tig0030688:17229-17248 None:intergenic 35.0%
!! CTAACTTTTCAGGGAGATTA+TGG - tig0030688:17395-17414 None:intergenic 35.0%
! CAAACACTGCTAACTTTTCA+GGG - tig0030688:17404-17423 None:intergenic 35.0%
! TCAAACACTGCTAACTTTTC+AGG - tig0030688:17405-17424 None:intergenic 35.0%
AATACTAGCTCATGGACATT+AGG - tig0030688:18022-18041 None:intergenic 35.0%
! ACACTTTCAATCTAAAGTGG+CGG + tig0030688:18241-18260 Msa1444310:intron 35.0%
CAATCACACGCATAATATGT+AGG - tig0030688:18280-18299 None:intergenic 35.0%
TGTGATTGTGCAATAAAAGC+TGG + tig0030688:18292-18311 Msa1444310:intron 35.0%
GTGTGTATCATGAGGATTAA+TGG + tig0030688:18392-18411 Msa1444310:intron 35.0%
CATGAGGATTAATGGTTGTA+TGG + tig0030688:18400-18419 Msa1444310:intron 35.0%
GGATTAATGGTTGTATGGTT+CGG + tig0030688:18405-18424 Msa1444310:intron 35.0%
!!! TTGTATGGTTCGGTTTTTGT+TGG + tig0030688:18415-18434 Msa1444310:intron 35.0%
! TGGTAGTGACAAGAAAAAGA+AGG + tig0030688:18456-18475 Msa1444310:CDS 35.0%
GGTAGTGACAAGAAAAAGAA+GGG + tig0030688:18457-18476 Msa1444310:CDS 35.0%
TTCGTGTTGTCTCTTTCTCT+TGG - tig0030688:17064-17083 None:intergenic 40.0%
! GTTGTCCAAGTAAAGGTACA+GGG - tig0030688:18071-18090 None:intergenic 40.0%
! AGTTGTCCAAGTAAAGGTAC+AGG - tig0030688:18072-18091 None:intergenic 40.0%
ACTCACAGTTGTCCAAGTAA+AGG - tig0030688:18078-18097 None:intergenic 40.0%
TAAACAGATAACCTGGTCTG+TGG - tig0030688:18126-18145 None:intergenic 40.0%
GAGTGTTTGTGTGTATCATG+AGG + tig0030688:18384-18403 Msa1444310:intron 40.0%
AGTGACAAGAAAAAGAAGGG+TGG + tig0030688:18460-18479 Msa1444310:CDS 40.0%
GAAAGAAATACCTGAAGACC+AGG + tig0030688:18503-18522 Msa1444310:CDS 40.0%
! TAATTTCACTGCATCGGCAT+CGG - tig0030688:18615-18634 None:intergenic 40.0%
TAGATGACAGAGTTGTTCTG+AGG + tig0030688:18636-18655 Msa1444310:three_prime_UTR 40.0%
TTCGTGTTGTCTCTTTCTCT+TGG - tig0030688:17064-17083 None:intergenic 40.0%
! GTTGTCCAAGTAAAGGTACA+GGG - tig0030688:18071-18090 None:intergenic 40.0%
! AGTTGTCCAAGTAAAGGTAC+AGG - tig0030688:18072-18091 None:intergenic 40.0%
ACTCACAGTTGTCCAAGTAA+AGG - tig0030688:18078-18097 None:intergenic 40.0%
TAAACAGATAACCTGGTCTG+TGG - tig0030688:18126-18145 None:intergenic 40.0%
GAGTGTTTGTGTGTATCATG+AGG + tig0030688:18384-18403 Msa1444310:intron 40.0%
AGTGACAAGAAAAAGAAGGG+TGG + tig0030688:18460-18479 Msa1444310:CDS 40.0%
GAAAGAAATACCTGAAGACC+AGG + tig0030688:18503-18522 Msa1444310:CDS 40.0%
! TAATTTCACTGCATCGGCAT+CGG - tig0030688:18615-18634 None:intergenic 40.0%
TAGATGACAGAGTTGTTCTG+AGG + tig0030688:18636-18655 Msa1444310:three_prime_UTR 40.0%
GAAATTGGGGGCAAAATCGA+AGG - tig0030688:17111-17130 None:intergenic 45.0%
!! TGGCAGGATTAGAAAGTGTC+TGG - tig0030688:17826-17845 None:intergenic 45.0%
CATTGAATGGCCTCTGAGTA+GGG + tig0030688:17869-17888 Msa1444310:intron 45.0%
CTTCTTCTTTGGGCGAATGA+GGG + tig0030688:17911-17930 Msa1444310:intron 45.0%
TTGGTCCCTGTACCTTTACT+TGG + tig0030688:18063-18082 Msa1444310:intron 45.0%
ACTAATCTCTCAAGGGACCA+GGG - tig0030688:18102-18121 None:intergenic 45.0%
CTGTGGCACTAATCTCTCAA+GGG - tig0030688:18109-18128 None:intergenic 45.0%
TCTGTGGCACTAATCTCTCA+AGG - tig0030688:18110-18129 None:intergenic 45.0%
CCAAGCGTAAACAGATAACC+TGG - tig0030688:18133-18152 None:intergenic 45.0%
CCAGGTTATCTGTTTACGCT+TGG + tig0030688:18130-18149 Msa1444310:intron 45.0%
TCCTCGCACAAGGAATCATT+GGG - tig0030688:18177-18196 None:intergenic 45.0%
GACCACAAGTATGTCCCAAA+GGG - tig0030688:18201-18220 None:intergenic 45.0%
TGACCACAAGTATGTCCCAA+AGG - tig0030688:18202-18221 None:intergenic 45.0%
! TTTGGGACATACTTGTGGTC+AGG + tig0030688:18201-18220 Msa1444310:intron 45.0%
CTAAAGTGGCGGTGATTCAT+AGG + tig0030688:18252-18271 Msa1444310:intron 45.0%
GACAAGAAAAAGAAGGGTGG+TGG + tig0030688:18463-18482 Msa1444310:CDS 45.0%
!! AAAAAGAAGGGTGGTGGAAG+TGG + tig0030688:18469-18488 Msa1444310:CDS 45.0%
! TGGTGGAAGTGGATTTAAGG+TGG + tig0030688:18480-18499 Msa1444310:CDS 45.0%
! GGTGGAAGTGGATTTAAGGT+GGG + tig0030688:18481-18500 Msa1444310:CDS 45.0%
GCAATGGAGCTCGACAAATA+AGG + tig0030688:18559-18578 Msa1444310:CDS 45.0%
ATGGAGCTCGACAAATAAGG+CGG + tig0030688:18562-18581 Msa1444310:exon 45.0%
ACAAATAAGGCGGCATTGTG+AGG + tig0030688:18572-18591 Msa1444310:exon 45.0%
GAAATTGGGGGCAAAATCGA+AGG - tig0030688:17111-17130 None:intergenic 45.0%
!! TGGCAGGATTAGAAAGTGTC+TGG - tig0030688:17826-17845 None:intergenic 45.0%
CATTGAATGGCCTCTGAGTA+GGG + tig0030688:17869-17888 Msa1444310:intron 45.0%
CTTCTTCTTTGGGCGAATGA+GGG + tig0030688:17911-17930 Msa1444310:intron 45.0%
TTGGTCCCTGTACCTTTACT+TGG + tig0030688:18063-18082 Msa1444310:intron 45.0%
ACTAATCTCTCAAGGGACCA+GGG - tig0030688:18102-18121 None:intergenic 45.0%
CTGTGGCACTAATCTCTCAA+GGG - tig0030688:18109-18128 None:intergenic 45.0%
TCTGTGGCACTAATCTCTCA+AGG - tig0030688:18110-18129 None:intergenic 45.0%
CCAAGCGTAAACAGATAACC+TGG - tig0030688:18133-18152 None:intergenic 45.0%
CCAGGTTATCTGTTTACGCT+TGG + tig0030688:18130-18149 Msa1444310:intron 45.0%
TCCTCGCACAAGGAATCATT+GGG - tig0030688:18177-18196 None:intergenic 45.0%
GACCACAAGTATGTCCCAAA+GGG - tig0030688:18201-18220 None:intergenic 45.0%
TGACCACAAGTATGTCCCAA+AGG - tig0030688:18202-18221 None:intergenic 45.0%
! TTTGGGACATACTTGTGGTC+AGG + tig0030688:18201-18220 Msa1444310:intron 45.0%
CTAAAGTGGCGGTGATTCAT+AGG + tig0030688:18252-18271 Msa1444310:intron 45.0%
GACAAGAAAAAGAAGGGTGG+TGG + tig0030688:18463-18482 Msa1444310:CDS 45.0%
!! AAAAAGAAGGGTGGTGGAAG+TGG + tig0030688:18469-18488 Msa1444310:CDS 45.0%
! TGGTGGAAGTGGATTTAAGG+TGG + tig0030688:18480-18499 Msa1444310:CDS 45.0%
! GGTGGAAGTGGATTTAAGGT+GGG + tig0030688:18481-18500 Msa1444310:CDS 45.0%
GCAATGGAGCTCGACAAATA+AGG + tig0030688:18559-18578 Msa1444310:CDS 45.0%
ATGGAGCTCGACAAATAAGG+CGG + tig0030688:18562-18581 Msa1444310:exon 45.0%
ACAAATAAGGCGGCATTGTG+AGG + tig0030688:18572-18591 Msa1444310:exon 45.0%
GTTGTCTCTTTCTCTTGGCG+AGG - tig0030688:17059-17078 None:intergenic 50.0%
CTGCCAGACTTGAGATCCTT+GGG + tig0030688:17840-17859 Msa1444310:intron 50.0%
ACACCCAAGGATCTCAAGTC+TGG - tig0030688:17846-17865 None:intergenic 50.0%
GACTTGAGATCCTTGGGTGT+TGG + tig0030688:17846-17865 Msa1444310:intron 50.0%
CCATTCAATGCCAACACCCA+AGG - tig0030688:17859-17878 None:intergenic 50.0%
!! CCTTGGGTGTTGGCATTGAA+TGG + tig0030688:17856-17875 Msa1444310:intron 50.0%
GCATTGAATGGCCTCTGAGT+AGG + tig0030688:17868-17887 Msa1444310:intron 50.0%
AAGAAGAAGGCTGCAGTCGA+CGG - tig0030688:17900-17919 None:intergenic 50.0%
TCGACTGCAGCCTTCTTCTT+TGG + tig0030688:17900-17919 Msa1444310:intron 50.0%
CGACTGCAGCCTTCTTCTTT+GGG + tig0030688:17901-17920 Msa1444310:intron 50.0%
CCTCATTCGCCCAAAGAAGA+AGG - tig0030688:17913-17932 None:intergenic 50.0%
CCTTCTTCTTTGGGCGAATG+AGG + tig0030688:17910-17929 Msa1444310:intron 50.0%
! GCGCTTGCTAACTAGACTGT+TGG - tig0030688:17956-17975 None:intergenic 50.0%
AGTCTAGTTAGCAAGCGCAG+TGG + tig0030688:17958-17977 Msa1444310:intron 50.0%
CACTAATCTCTCAAGGGACC+AGG - tig0030688:18103-18122 None:intergenic 50.0%
AGAGATTAGTGCCACAGACC+AGG + tig0030688:18112-18131 Msa1444310:intron 50.0%
TTTACGCTTGGCCTCATGTG+CGG + tig0030688:18142-18161 Msa1444310:intron 50.0%
CCTCGCACAAGGAATCATTG+GGG - tig0030688:18176-18195 None:intergenic 50.0%
CTCCTCGCACAAGGAATCAT+TGG - tig0030688:18178-18197 None:intergenic 50.0%
!! AGCCCTTTGGGACATACTTG+TGG + tig0030688:18196-18215 Msa1444310:intron 50.0%
!! GGGTGGTGGAAGTGGATTTA+AGG + tig0030688:18477-18496 Msa1444310:CDS 50.0%
TTTCGACAGAGCTGACAACC+TGG - tig0030688:18524-18543 None:intergenic 50.0%
GTTGTCTCTTTCTCTTGGCG+AGG - tig0030688:17059-17078 None:intergenic 50.0%
CTGCCAGACTTGAGATCCTT+GGG + tig0030688:17840-17859 Msa1444310:intron 50.0%
ACACCCAAGGATCTCAAGTC+TGG - tig0030688:17846-17865 None:intergenic 50.0%
GACTTGAGATCCTTGGGTGT+TGG + tig0030688:17846-17865 Msa1444310:intron 50.0%
CCATTCAATGCCAACACCCA+AGG - tig0030688:17859-17878 None:intergenic 50.0%
!! CCTTGGGTGTTGGCATTGAA+TGG + tig0030688:17856-17875 Msa1444310:intron 50.0%
GCATTGAATGGCCTCTGAGT+AGG + tig0030688:17868-17887 Msa1444310:intron 50.0%
AAGAAGAAGGCTGCAGTCGA+CGG - tig0030688:17900-17919 None:intergenic 50.0%
TCGACTGCAGCCTTCTTCTT+TGG + tig0030688:17900-17919 Msa1444310:intron 50.0%
CGACTGCAGCCTTCTTCTTT+GGG + tig0030688:17901-17920 Msa1444310:intron 50.0%
CCTCATTCGCCCAAAGAAGA+AGG - tig0030688:17913-17932 None:intergenic 50.0%
CCTTCTTCTTTGGGCGAATG+AGG + tig0030688:17910-17929 Msa1444310:intron 50.0%
! GCGCTTGCTAACTAGACTGT+TGG - tig0030688:17956-17975 None:intergenic 50.0%
AGTCTAGTTAGCAAGCGCAG+TGG + tig0030688:17958-17977 Msa1444310:intron 50.0%
CACTAATCTCTCAAGGGACC+AGG - tig0030688:18103-18122 None:intergenic 50.0%
AGAGATTAGTGCCACAGACC+AGG + tig0030688:18112-18131 Msa1444310:intron 50.0%
TTTACGCTTGGCCTCATGTG+CGG + tig0030688:18142-18161 Msa1444310:intron 50.0%
CCTCGCACAAGGAATCATTG+GGG - tig0030688:18176-18195 None:intergenic 50.0%
CTCCTCGCACAAGGAATCAT+TGG - tig0030688:18178-18197 None:intergenic 50.0%
!! AGCCCTTTGGGACATACTTG+TGG + tig0030688:18196-18215 Msa1444310:intron 50.0%
!! GGGTGGTGGAAGTGGATTTA+AGG + tig0030688:18477-18496 Msa1444310:CDS 50.0%
TTTCGACAGAGCTGACAACC+TGG - tig0030688:18524-18543 None:intergenic 50.0%
CCAAGGATCTCAAGTCTGGC+AGG - tig0030688:17842-17861 None:intergenic 55.0%
CCTGCCAGACTTGAGATCCT+TGG + tig0030688:17839-17858 Msa1444310:intron 55.0%
TTGGACAACTGTGAGTGCCC+TGG + tig0030688:18082-18101 Msa1444310:intron 55.0%
GGGTTGTGATACCGCACATG+AGG - tig0030688:18156-18175 None:intergenic 55.0%
CCCCAATGATTCCTTGTGCG+AGG + tig0030688:18173-18192 Msa1444310:intron 55.0%
! GAGCTGACAACCTGGTCTTC+AGG - tig0030688:18516-18535 None:intergenic 55.0%
GTCGAAAGCTAAAGCTGCGC+AGG + tig0030688:18537-18556 Msa1444310:CDS 55.0%
AGCTAAAGCTGCGCAGGCAA+TGG + tig0030688:18543-18562 Msa1444310:CDS 55.0%
CCAAGGATCTCAAGTCTGGC+AGG - tig0030688:17842-17861 None:intergenic 55.0%
CCTGCCAGACTTGAGATCCT+TGG + tig0030688:17839-17858 Msa1444310:intron 55.0%
TTGGACAACTGTGAGTGCCC+TGG + tig0030688:18082-18101 Msa1444310:intron 55.0%
GGGTTGTGATACCGCACATG+AGG - tig0030688:18156-18175 None:intergenic 55.0%
CCCCAATGATTCCTTGTGCG+AGG + tig0030688:18173-18192 Msa1444310:intron 55.0%
! GAGCTGACAACCTGGTCTTC+AGG - tig0030688:18516-18535 None:intergenic 55.0%
GTCGAAAGCTAAAGCTGCGC+AGG + tig0030688:18537-18556 Msa1444310:CDS 55.0%
AGCTAAAGCTGCGCAGGCAA+TGG + tig0030688:18543-18562 Msa1444310:CDS 55.0%
AAGAAGGCTGCAGTCGACGG+AGG - tig0030688:17897-17916 None:intergenic 60.0%
TCCTTGTGCGAGGAGCCCTT+TGG + tig0030688:18183-18202 Msa1444310:intron 60.0%
CCTTGTGCGAGGAGCCCTTT+GGG + tig0030688:18184-18203 Msa1444310:intron 60.0%
AAGAAGGCTGCAGTCGACGG+AGG - tig0030688:17897-17916 None:intergenic 60.0%
TCCTTGTGCGAGGAGCCCTT+TGG + tig0030688:18183-18202 Msa1444310:intron 60.0%
CCTTGTGCGAGGAGCCCTTT+GGG + tig0030688:18184-18203 Msa1444310:intron 60.0%
!! GACGGAGGTGCCCTACTCAG+AGG - tig0030688:17882-17901 None:intergenic 65.0%
CCCAAAGGGCTCCTCGCACA+AGG - tig0030688:18187-18206 None:intergenic 65.0%
!! GACGGAGGTGCCCTACTCAG+AGG - tig0030688:17882-17901 None:intergenic 65.0%
CCCAAAGGGCTCCTCGCACA+AGG - tig0030688:18187-18206 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0030688 gene 16975 18743 16975 ID=Msa1444310;Name=Msa1444310
tig0030688 mRNA 16975 18743 16975 ID=Msa1444310-mRNA-1;Parent=Msa1444310;Name=Msa1444310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=64|1|1|1|1|1|3|164|82
tig0030688 exon 16975 17096 16975 ID=Msa1444310-mRNA-1:exon:14416;Parent=Msa1444310-mRNA-1
tig0030688 exon 17189 17250 17189 ID=Msa1444310-mRNA-1:exon:14417;Parent=Msa1444310-mRNA-1
tig0030688 exon 18451 18743 18451 ID=Msa1444310-mRNA-1:exon:14418;Parent=Msa1444310-mRNA-1
tig0030688 five_prime_UTR 16975 17038 16975 ID=Msa1444310-mRNA-1:five_prime_utr;Parent=Msa1444310-mRNA-1
tig0030688 CDS 17039 17096 17039 ID=Msa1444310-mRNA-1:cds;Parent=Msa1444310-mRNA-1
tig0030688 CDS 17189 17250 17189 ID=Msa1444310-mRNA-1:cds;Parent=Msa1444310-mRNA-1
tig0030688 CDS 18451 18579 18451 ID=Msa1444310-mRNA-1:cds;Parent=Msa1444310-mRNA-1
tig0030688 three_prime_UTR 18580 18743 18580 ID=Msa1444310-mRNA-1:three_prime_utr;Parent=Msa1444310-mRNA-1
Gene Sequence

>Msa1444310

ATGTCGAAGAAGAACGACCTCGCCAAGAGAAAGAGACAACACGAATTCGAACTGCGAAGAGAAAAACTTGAGAAGGAGAAGAAAGAAAAGAAGCTCCAAGCGAAGAAAAACAAGATGAAAGTTGATGGTAGTGACAAGAAAAAGAAGGGTGGTGGAAGTGGATTTAAGGTGGGAAAGAAATACCTGAAGACCAGGTTGTCAGCTCTGTCGAAAGCTAAAGCTGCGCAGGCAATGGAGCTCGACAAATAA

Protein sequence

>Msa1444310

MSKKNDLAKRKRQHEFELRREKLEKEKKEKKLQAKKNKMKVDGSDKKKKGGGSGFKVGKKYLKTRLSALSKAKAAQAMELDK*