AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1125760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125760 MtrunA17_Chr7g0266561 100.000 80 0 0 1 80 1 80 1.03e-53 161
Msa1125760 MtrunA17_Chr6g0477821 100.000 76 0 0 1 76 1 76 1.51e-50 153
Msa1125760 MtrunA17_Chr7g0240391 38.028 71 35 1 9 70 10 80 7.24e-13 58.5
Msa1125760 MtrunA17_Chr8g0351841 35.211 71 37 1 9 70 10 80 3.16e-11 54.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125760 AT2G23930.1 91.139 79 7 0 1 79 1 79 2.89e-49 150
Msa1125760 AT3G11500.2 91.139 79 7 0 1 79 1 79 4.75e-49 149
Msa1125760 AT3G11500.1 91.139 79 7 0 1 79 1 79 4.75e-49 149
Msa1125760 AT2G23930.2 88.679 53 6 0 27 79 1 53 1.70e-28 97.1
Msa1125760 AT2G03870.2 38.028 71 35 1 9 70 10 80 1.65e-12 57.8
Msa1125760 AT2G03870.1 38.028 71 35 1 9 70 10 80 1.65e-12 57.8

Find 41 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGACCAATTTATGAATT+TGG 0.200064 7_3:+77240138 Msa1125760:CDS
CTAACTAATTCTCAGAAGTT+AGG 0.225810 7_3:+77239012 None:intergenic
TGTGAGTGCTGGATGCATTT+AGG 0.243938 7_3:+77240529 Msa1125760:three_prime_UTR
GTGAGTGCTGGATGCATTTA+GGG 0.270068 7_3:+77240530 Msa1125760:three_prime_UTR
CAACAACCAAATTCATAAAT+TGG 0.293346 7_3:-77240144 None:intergenic
TCGAAAATTGCAGCTGTTGA+TGG 0.308847 7_3:+77240667 Msa1125760:three_prime_UTR
AATGCTTACTTCTTCAAATC+TGG 0.328903 7_3:-77239129 None:intergenic
TTCTCAGAAGTTAGGGTTTG+TGG 0.351451 7_3:+77239020 None:intergenic
AACGGAGAACGAAGATGATT+TGG 0.363843 7_3:-77239069 None:intergenic
TCTGGTTGGTTTGTGAGTGC+TGG 0.367081 7_3:+77240518 Msa1125760:three_prime_UTR
TGCAATTGTGGATTGTAATA+TGG 0.384204 7_3:+77240466 Msa1125760:three_prime_UTR
TCTTTCACCATGAGTAGGTC+AGG 0.395068 7_3:+77239099 Msa1125760:exon
TAACTAATTCTCAGAAGTTA+GGG 0.411179 7_3:+77239013 None:intergenic
AATTAGATGCTTCTGTTCAC+TGG 0.418853 7_3:-77240371 None:intergenic
ACATTTATAACTAAATTTCA+AGG 0.440241 7_3:+77240408 Msa1125760:three_prime_UTR
AGGGTTGTAGTGGATGGTAA+TGG 0.465552 7_3:+77240549 Msa1125760:three_prime_UTR
AAATGTGATTTCAACTAAAG+AGG 0.496559 7_3:-77240599 None:intergenic
GCATTTAGGGTTGTAGTGGA+TGG 0.497190 7_3:+77240543 Msa1125760:three_prime_UTR
ACAGAAACCGCTTAGATGCT+AGG 0.499392 7_3:+77240436 Msa1125760:three_prime_UTR
AATGCAAATCGCATGATTGT+TGG 0.502115 7_3:+77240103 Msa1125760:CDS
TCATAAATTGGTCGAAGCCA+CGG 0.529169 7_3:-77240132 None:intergenic
GGAGAACGAAGATGATTTGG+AGG 0.530047 7_3:-77239066 None:intergenic
CGCTTTCTGCAGGTGATCAG+AGG 0.541314 7_3:+77240317 Msa1125760:intron
TTCTTTCTTTCACCATGAGT+AGG 0.542219 7_3:+77239094 Msa1125760:exon
AACGAAGATGATTTGGAGGG+TGG 0.546349 7_3:-77239062 None:intergenic
GGATGCATTTAGGGTTGTAG+TGG 0.555307 7_3:+77240539 Msa1125760:three_prime_UTR
GACAATACTGTGGAGGTGAA+TGG 0.565835 7_3:+77240166 Msa1125760:CDS
TGGCTGCCCTGACCTACTCA+TGG 0.567702 7_3:-77239106 None:intergenic
ATGGTGAAAGAAAGAACAAA+CGG 0.567787 7_3:-77239087 None:intergenic
AAATAGTGTGGTCACTGTAG+AGG 0.581425 7_3:+77240340 Msa1125760:CDS
CTTTCACCATGAGTAGGTCA+GGG 0.582031 7_3:+77239100 Msa1125760:exon
CTAGGAGTAGAATGCAATTG+TGG 0.586469 7_3:+77240454 Msa1125760:three_prime_UTR
GCTTACTTCTTCAAATCTGG+TGG 0.598528 7_3:-77239126 None:intergenic
ATGATTGTTGGTACTCTCCG+TGG 0.628986 7_3:+77240115 Msa1125760:CDS
TCATCTTAGCGAGAAATCTG+AGG 0.629688 7_3:+77240489 Msa1125760:three_prime_UTR
TTCTACTCCTAGCATCTAAG+CGG 0.649009 7_3:-77240443 None:intergenic
CATCTTAGCGAGAAATCTGA+GGG 0.651111 7_3:+77240490 Msa1125760:three_prime_UTR
TTTGGTTGTTGACAATACTG+TGG 0.664176 7_3:+77240156 Msa1125760:CDS
GAGAACGAAGATGATTTGGA+GGG 0.675668 7_3:-77239065 None:intergenic
GGTTGTTGACAATACTGTGG+AGG 0.683546 7_3:+77240159 Msa1125760:CDS
GGTGATCAGAGGAAATAGTG+TGG 0.728293 7_3:+77240328 Msa1125760:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACCTTTTTTTTTTTTTTAA+TGG - chr7_3:77239406-77239425 None:intergenic 10.0%
!!! TAATTTTTTAACTGAATTTT+TGG + chr7_3:77239474-77239493 Msa1125760:intron 10.0%
!!! AACCTTTTTTTTTTTTTTAA+TGG - chr7_3:77239406-77239425 None:intergenic 10.0%
!!! TAATTTTTTAACTGAATTTT+TGG + chr7_3:77239474-77239493 Msa1125760:intron 10.0%
!! TGCCATTAAAAAAAAAAAAA+AGG + chr7_3:77239401-77239420 Msa1125760:intron 15.0%
!! TATTCATATAAATCTTTCTA+CGG + chr7_3:77239900-77239919 Msa1125760:intron 15.0%
!! ACATTTATAACTAAATTTCA+AGG + chr7_3:77240408-77240427 Msa1125760:three_prime_UTR 15.0%
!! TGCCATTAAAAAAAAAAAAA+AGG + chr7_3:77239401-77239420 Msa1125760:intron 15.0%
!! TATTCATATAAATCTTTCTA+CGG + chr7_3:77239900-77239919 Msa1125760:intron 15.0%
!! ACATTTATAACTAAATTTCA+AGG + chr7_3:77240408-77240427 Msa1125760:three_prime_UTR 15.0%
!!! TATGCATTTTTTTTTTCGAT+AGG + chr7_3:77239229-77239248 Msa1125760:intron 20.0%
!! ATATGGTAGCTTATATTATT+TGG + chr7_3:77239759-77239778 Msa1125760:intron 20.0%
!! ATTCATAAAGGAATGAAAAA+CGG - chr7_3:77239847-77239866 None:intergenic 20.0%
!!! TTTTTCATTCCTTTATGAAT+TGG + chr7_3:77239847-77239866 Msa1125760:intron 20.0%
!!! TTTTCATTCCTTTATGAATT+GGG + chr7_3:77239848-77239867 Msa1125760:intron 20.0%
!! ATTCATATAAATCTTTCTAC+GGG + chr7_3:77239901-77239920 Msa1125760:intron 20.0%
!!! TATGCATTTTTTTTTTCGAT+AGG + chr7_3:77239229-77239248 Msa1125760:intron 20.0%
!! ATATGGTAGCTTATATTATT+TGG + chr7_3:77239759-77239778 Msa1125760:intron 20.0%
!! ATTCATAAAGGAATGAAAAA+CGG - chr7_3:77239847-77239866 None:intergenic 20.0%
!!! TTTTTCATTCCTTTATGAAT+TGG + chr7_3:77239847-77239866 Msa1125760:intron 20.0%
!!! TTTTCATTCCTTTATGAATT+GGG + chr7_3:77239848-77239867 Msa1125760:intron 20.0%
!! ATTCATATAAATCTTTCTAC+GGG + chr7_3:77239901-77239920 Msa1125760:intron 20.0%
!!! TTTTTTTTTCGATAGGTACA+TGG + chr7_3:77239236-77239255 Msa1125760:intron 25.0%
! TAACCACTTCTTCTATTAAT+TGG - chr7_3:77239617-77239636 None:intergenic 25.0%
! TTTCATTCCTTTATGAATTG+GGG + chr7_3:77239849-77239868 Msa1125760:intron 25.0%
! ATATGTATCTATGTACATGT+GGG + chr7_3:77239972-77239991 Msa1125760:intron 25.0%
! ACATGTGTATAAATGGATAT+TGG + chr7_3:77239999-77240018 Msa1125760:intron 25.0%
! CAACAACCAAATTCATAAAT+TGG - chr7_3:77240147-77240166 None:intergenic 25.0%
! AAATGTGATTTCAACTAAAG+AGG - chr7_3:77240602-77240621 None:intergenic 25.0%
!!! TTTTTTTTTCGATAGGTACA+TGG + chr7_3:77239236-77239255 Msa1125760:intron 25.0%
! TAACCACTTCTTCTATTAAT+TGG - chr7_3:77239617-77239636 None:intergenic 25.0%
! TTTCATTCCTTTATGAATTG+GGG + chr7_3:77239849-77239868 Msa1125760:intron 25.0%
! ATATGTATCTATGTACATGT+GGG + chr7_3:77239972-77239991 Msa1125760:intron 25.0%
! ACATGTGTATAAATGGATAT+TGG + chr7_3:77239999-77240018 Msa1125760:intron 25.0%
! CAACAACCAAATTCATAAAT+TGG - chr7_3:77240147-77240166 None:intergenic 25.0%
! AAATGTGATTTCAACTAAAG+AGG - chr7_3:77240602-77240621 None:intergenic 25.0%
ATGGTGAAAGAAAGAACAAA+CGG - chr7_3:77239090-77239109 None:intergenic 30.0%
AATGCTTACTTCTTCAAATC+TGG - chr7_3:77239132-77239151 None:intergenic 30.0%
! TTTTGAATTTCTACTGCACT+TGG + chr7_3:77239196-77239215 Msa1125760:intron 30.0%
!! TTTTGTAGTTTGTGTGAAGA+TGG + chr7_3:77239426-77239445 Msa1125760:intron 30.0%
GATCCAATTAATAGAAGAAG+TGG + chr7_3:77239611-77239630 Msa1125760:intron 30.0%
TGTAATTTCTCTCGCTTATA+TGG + chr7_3:77239742-77239761 Msa1125760:intron 30.0%
TTCATTCCTTTATGAATTGG+GGG + chr7_3:77239850-77239869 Msa1125760:intron 30.0%
CATGTACATAGATACATATC+AGG - chr7_3:77239971-77239990 None:intergenic 30.0%
GATATGTATCTATGTACATG+TGG + chr7_3:77239971-77239990 Msa1125760:intron 30.0%
GGGTTTAACATGTGTATAAA+TGG + chr7_3:77239992-77240011 Msa1125760:intron 30.0%
AGGAATTATACTGAAGTATG+TGG + chr7_3:77240059-77240078 Msa1125760:intron 30.0%
CTTCGACCAATTTATGAATT+TGG + chr7_3:77240138-77240157 Msa1125760:CDS 30.0%
GCAATGAGAAAAATGACATA+GGG + chr7_3:77240188-77240207 Msa1125760:CDS 30.0%
!! ACTTGATAATGCATAGTATG+AGG - chr7_3:77240226-77240245 None:intergenic 30.0%
! TGCAATTGTGGATTGTAATA+TGG + chr7_3:77240466-77240485 Msa1125760:three_prime_UTR 30.0%
! TTCATTTATGTGCTCTTTTC+TGG + chr7_3:77240714-77240733 Msa1125760:three_prime_UTR 30.0%
ATGGTGAAAGAAAGAACAAA+CGG - chr7_3:77239090-77239109 None:intergenic 30.0%
AATGCTTACTTCTTCAAATC+TGG - chr7_3:77239132-77239151 None:intergenic 30.0%
! TTTTGAATTTCTACTGCACT+TGG + chr7_3:77239196-77239215 Msa1125760:intron 30.0%
!! TTTTGTAGTTTGTGTGAAGA+TGG + chr7_3:77239426-77239445 Msa1125760:intron 30.0%
GATCCAATTAATAGAAGAAG+TGG + chr7_3:77239611-77239630 Msa1125760:intron 30.0%
TGTAATTTCTCTCGCTTATA+TGG + chr7_3:77239742-77239761 Msa1125760:intron 30.0%
TTCATTCCTTTATGAATTGG+GGG + chr7_3:77239850-77239869 Msa1125760:intron 30.0%
CATGTACATAGATACATATC+AGG - chr7_3:77239971-77239990 None:intergenic 30.0%
GATATGTATCTATGTACATG+TGG + chr7_3:77239971-77239990 Msa1125760:intron 30.0%
GGGTTTAACATGTGTATAAA+TGG + chr7_3:77239992-77240011 Msa1125760:intron 30.0%
AGGAATTATACTGAAGTATG+TGG + chr7_3:77240059-77240078 Msa1125760:intron 30.0%
CTTCGACCAATTTATGAATT+TGG + chr7_3:77240138-77240157 Msa1125760:CDS 30.0%
GCAATGAGAAAAATGACATA+GGG + chr7_3:77240188-77240207 Msa1125760:CDS 30.0%
!! ACTTGATAATGCATAGTATG+AGG - chr7_3:77240226-77240245 None:intergenic 30.0%
! TGCAATTGTGGATTGTAATA+TGG + chr7_3:77240466-77240485 Msa1125760:three_prime_UTR 30.0%
! TTCATTTATGTGCTCTTTTC+TGG + chr7_3:77240714-77240733 Msa1125760:three_prime_UTR 30.0%
TTCTTTCTTTCACCATGAGT+AGG + chr7_3:77239094-77239113 Msa1125760:exon 35.0%
TTTCTAGGTACAAGATTGAG+TGG + chr7_3:77239524-77239543 Msa1125760:intron 35.0%
TTCTAGGTACAAGATTGAGT+GGG + chr7_3:77239525-77239544 Msa1125760:intron 35.0%
GCATTATAAAGTGAAGTTCG+AGG + chr7_3:77239781-77239800 Msa1125760:intron 35.0%
CATGTCTTATGATTTAGCTG+AGG + chr7_3:77240039-77240058 Msa1125760:intron 35.0%
AATGCAAATCGCATGATTGT+TGG + chr7_3:77240103-77240122 Msa1125760:CDS 35.0%
TTTGGTTGTTGACAATACTG+TGG + chr7_3:77240156-77240175 Msa1125760:CDS 35.0%
GGCAATGAGAAAAATGACAT+AGG + chr7_3:77240187-77240206 Msa1125760:CDS 35.0%
TGAGAAAAATGACATAGGGA+TGG + chr7_3:77240192-77240211 Msa1125760:CDS 35.0%
AATTAGATGCTTCTGTTCAC+TGG - chr7_3:77240374-77240393 None:intergenic 35.0%
TTCTTTCTTTCACCATGAGT+AGG + chr7_3:77239094-77239113 Msa1125760:exon 35.0%
TTTCTAGGTACAAGATTGAG+TGG + chr7_3:77239524-77239543 Msa1125760:intron 35.0%
TTCTAGGTACAAGATTGAGT+GGG + chr7_3:77239525-77239544 Msa1125760:intron 35.0%
GCATTATAAAGTGAAGTTCG+AGG + chr7_3:77239781-77239800 Msa1125760:intron 35.0%
CATGTCTTATGATTTAGCTG+AGG + chr7_3:77240039-77240058 Msa1125760:intron 35.0%
AATGCAAATCGCATGATTGT+TGG + chr7_3:77240103-77240122 Msa1125760:CDS 35.0%
TTTGGTTGTTGACAATACTG+TGG + chr7_3:77240156-77240175 Msa1125760:CDS 35.0%
GGCAATGAGAAAAATGACAT+AGG + chr7_3:77240187-77240206 Msa1125760:CDS 35.0%
TGAGAAAAATGACATAGGGA+TGG + chr7_3:77240192-77240211 Msa1125760:CDS 35.0%
AATTAGATGCTTCTGTTCAC+TGG - chr7_3:77240374-77240393 None:intergenic 35.0%
! GAGAACGAAGATGATTTGGA+GGG - chr7_3:77239068-77239087 None:intergenic 40.0%
AACGGAGAACGAAGATGATT+TGG - chr7_3:77239072-77239091 None:intergenic 40.0%
GCTTACTTCTTCAAATCTGG+TGG - chr7_3:77239129-77239148 None:intergenic 40.0%
GGACAAACAGCTTCAAAGTA+AGG + chr7_3:77239257-77239276 Msa1125760:intron 40.0%
CACTATTGCTATGAGTTCAG+TGG + chr7_3:77239501-77239520 Msa1125760:intron 40.0%
CTATGAGTTCAGTGGTTTCT+AGG + chr7_3:77239509-77239528 Msa1125760:intron 40.0%
! CTGTATGTGAGAGCTTTTAC+TGG + chr7_3:77239652-77239671 Msa1125760:intron 40.0%
TGGATTGCAGAGAAAAAGTG+TGG + chr7_3:77239689-77239708 Msa1125760:intron 40.0%
CGTAATCCCCCAATTCATAA+AGG - chr7_3:77239859-77239878 None:intergenic 40.0%
CATATCAGGAACAAACAGAC+AGG - chr7_3:77239957-77239976 None:intergenic 40.0%
TCATAAATTGGTCGAAGCCA+CGG - chr7_3:77240135-77240154 None:intergenic 40.0%
GAAAAATGACATAGGGATGG+TGG + chr7_3:77240195-77240214 Msa1125760:CDS 40.0%
CATCTTATAGAGCTTGAGCT+AGG + chr7_3:77240271-77240290 Msa1125760:intron 40.0%
! AATTTTCACTCGCTTTCTGC+AGG + chr7_3:77240307-77240326 Msa1125760:intron 40.0%
AAATAGTGTGGTCACTGTAG+AGG + chr7_3:77240340-77240359 Msa1125760:CDS 40.0%
TTCTACTCCTAGCATCTAAG+CGG - chr7_3:77240446-77240465 None:intergenic 40.0%
CTAGGAGTAGAATGCAATTG+TGG + chr7_3:77240454-77240473 Msa1125760:three_prime_UTR 40.0%
TCATCTTAGCGAGAAATCTG+AGG + chr7_3:77240489-77240508 Msa1125760:three_prime_UTR 40.0%
CATCTTAGCGAGAAATCTGA+GGG + chr7_3:77240490-77240509 Msa1125760:three_prime_UTR 40.0%
! AGAAATCTGAGGGTCTTTTC+TGG + chr7_3:77240500-77240519 Msa1125760:three_prime_UTR 40.0%
TCGAAAATTGCAGCTGTTGA+TGG + chr7_3:77240667-77240686 Msa1125760:three_prime_UTR 40.0%
! GAGAACGAAGATGATTTGGA+GGG - chr7_3:77239068-77239087 None:intergenic 40.0%
AACGGAGAACGAAGATGATT+TGG - chr7_3:77239072-77239091 None:intergenic 40.0%
GCTTACTTCTTCAAATCTGG+TGG - chr7_3:77239129-77239148 None:intergenic 40.0%
GGACAAACAGCTTCAAAGTA+AGG + chr7_3:77239257-77239276 Msa1125760:intron 40.0%
CACTATTGCTATGAGTTCAG+TGG + chr7_3:77239501-77239520 Msa1125760:intron 40.0%
CTATGAGTTCAGTGGTTTCT+AGG + chr7_3:77239509-77239528 Msa1125760:intron 40.0%
! CTGTATGTGAGAGCTTTTAC+TGG + chr7_3:77239652-77239671 Msa1125760:intron 40.0%
TGGATTGCAGAGAAAAAGTG+TGG + chr7_3:77239689-77239708 Msa1125760:intron 40.0%
CGTAATCCCCCAATTCATAA+AGG - chr7_3:77239859-77239878 None:intergenic 40.0%
CATATCAGGAACAAACAGAC+AGG - chr7_3:77239957-77239976 None:intergenic 40.0%
TCATAAATTGGTCGAAGCCA+CGG - chr7_3:77240135-77240154 None:intergenic 40.0%
GAAAAATGACATAGGGATGG+TGG + chr7_3:77240195-77240214 Msa1125760:CDS 40.0%
CATCTTATAGAGCTTGAGCT+AGG + chr7_3:77240271-77240290 Msa1125760:intron 40.0%
! AATTTTCACTCGCTTTCTGC+AGG + chr7_3:77240307-77240326 Msa1125760:intron 40.0%
AAATAGTGTGGTCACTGTAG+AGG + chr7_3:77240340-77240359 Msa1125760:CDS 40.0%
TTCTACTCCTAGCATCTAAG+CGG - chr7_3:77240446-77240465 None:intergenic 40.0%
CTAGGAGTAGAATGCAATTG+TGG + chr7_3:77240454-77240473 Msa1125760:three_prime_UTR 40.0%
TCATCTTAGCGAGAAATCTG+AGG + chr7_3:77240489-77240508 Msa1125760:three_prime_UTR 40.0%
CATCTTAGCGAGAAATCTGA+GGG + chr7_3:77240490-77240509 Msa1125760:three_prime_UTR 40.0%
! AGAAATCTGAGGGTCTTTTC+TGG + chr7_3:77240500-77240519 Msa1125760:three_prime_UTR 40.0%
TCGAAAATTGCAGCTGTTGA+TGG + chr7_3:77240667-77240686 Msa1125760:three_prime_UTR 40.0%
! AACGAAGATGATTTGGAGGG+TGG - chr7_3:77239065-77239084 None:intergenic 45.0%
! GGAGAACGAAGATGATTTGG+AGG - chr7_3:77239069-77239088 None:intergenic 45.0%
TCTTTCACCATGAGTAGGTC+AGG + chr7_3:77239099-77239118 Msa1125760:exon 45.0%
CTTTCACCATGAGTAGGTCA+GGG + chr7_3:77239100-77239119 Msa1125760:exon 45.0%
! TACTGGCTGCGAACATTCTT+TGG + chr7_3:77239669-77239688 Msa1125760:intron 45.0%
ATGATTGTTGGTACTCTCCG+TGG + chr7_3:77240115-77240134 Msa1125760:CDS 45.0%
GGTTGTTGACAATACTGTGG+AGG + chr7_3:77240159-77240178 Msa1125760:CDS 45.0%
GACAATACTGTGGAGGTGAA+TGG + chr7_3:77240166-77240185 Msa1125760:CDS 45.0%
GGTGATCAGAGGAAATAGTG+TGG + chr7_3:77240328-77240347 Msa1125760:intron 45.0%
ACAGAAACCGCTTAGATGCT+AGG + chr7_3:77240436-77240455 Msa1125760:three_prime_UTR 45.0%
!! ATCTGAGGGTCTTTTCTGGT+TGG + chr7_3:77240504-77240523 Msa1125760:three_prime_UTR 45.0%
!! TGTGAGTGCTGGATGCATTT+AGG + chr7_3:77240529-77240548 Msa1125760:three_prime_UTR 45.0%
!! GTGAGTGCTGGATGCATTTA+GGG + chr7_3:77240530-77240549 Msa1125760:three_prime_UTR 45.0%
! GGATGCATTTAGGGTTGTAG+TGG + chr7_3:77240539-77240558 Msa1125760:three_prime_UTR 45.0%
! GCATTTAGGGTTGTAGTGGA+TGG + chr7_3:77240543-77240562 Msa1125760:three_prime_UTR 45.0%
!! AGGGTTGTAGTGGATGGTAA+TGG + chr7_3:77240549-77240568 Msa1125760:three_prime_UTR 45.0%
! AACGAAGATGATTTGGAGGG+TGG - chr7_3:77239065-77239084 None:intergenic 45.0%
! GGAGAACGAAGATGATTTGG+AGG - chr7_3:77239069-77239088 None:intergenic 45.0%
TCTTTCACCATGAGTAGGTC+AGG + chr7_3:77239099-77239118 Msa1125760:exon 45.0%
CTTTCACCATGAGTAGGTCA+GGG + chr7_3:77239100-77239119 Msa1125760:exon 45.0%
! TACTGGCTGCGAACATTCTT+TGG + chr7_3:77239669-77239688 Msa1125760:intron 45.0%
ATGATTGTTGGTACTCTCCG+TGG + chr7_3:77240115-77240134 Msa1125760:CDS 45.0%
GGTTGTTGACAATACTGTGG+AGG + chr7_3:77240159-77240178 Msa1125760:CDS 45.0%
GACAATACTGTGGAGGTGAA+TGG + chr7_3:77240166-77240185 Msa1125760:CDS 45.0%
GGTGATCAGAGGAAATAGTG+TGG + chr7_3:77240328-77240347 Msa1125760:intron 45.0%
ACAGAAACCGCTTAGATGCT+AGG + chr7_3:77240436-77240455 Msa1125760:three_prime_UTR 45.0%
!! ATCTGAGGGTCTTTTCTGGT+TGG + chr7_3:77240504-77240523 Msa1125760:three_prime_UTR 45.0%
!! TGTGAGTGCTGGATGCATTT+AGG + chr7_3:77240529-77240548 Msa1125760:three_prime_UTR 45.0%
!! GTGAGTGCTGGATGCATTTA+GGG + chr7_3:77240530-77240549 Msa1125760:three_prime_UTR 45.0%
! GGATGCATTTAGGGTTGTAG+TGG + chr7_3:77240539-77240558 Msa1125760:three_prime_UTR 45.0%
! GCATTTAGGGTTGTAGTGGA+TGG + chr7_3:77240543-77240562 Msa1125760:three_prime_UTR 45.0%
!! AGGGTTGTAGTGGATGGTAA+TGG + chr7_3:77240549-77240568 Msa1125760:three_prime_UTR 45.0%
!!! TTTTTTTTTTAAATCAAATT+TGG + chr7_3:77239330-77239349 Msa1125760:intron 5.0%
!! CTATATATATAAATATAAAA+AGG - chr7_3:77239379-77239398 None:intergenic 5.0%
!!! TTTTTTTTTTAAATCAAATT+TGG + chr7_3:77239330-77239349 Msa1125760:intron 5.0%
!! CTATATATATAAATATAAAA+AGG - chr7_3:77239379-77239398 None:intergenic 5.0%
GTGTGGCATGTCTTTGCTAC+TGG + chr7_3:77239706-77239725 Msa1125760:intron 50.0%
!! TCTGGTTGGTTTGTGAGTGC+TGG + chr7_3:77240518-77240537 Msa1125760:three_prime_UTR 50.0%
GTGTGGCATGTCTTTGCTAC+TGG + chr7_3:77239706-77239725 Msa1125760:intron 50.0%
!! TCTGGTTGGTTTGTGAGTGC+TGG + chr7_3:77240518-77240537 Msa1125760:three_prime_UTR 50.0%
CGCTTTCTGCAGGTGATCAG+AGG + chr7_3:77240317-77240336 Msa1125760:intron 55.0%
CGCTTTCTGCAGGTGATCAG+AGG + chr7_3:77240317-77240336 Msa1125760:intron 55.0%
TGGCTGCCCTGACCTACTCA+TGG - chr7_3:77239109-77239128 None:intergenic 60.0%
TGGCTGCCCTGACCTACTCA+TGG - chr7_3:77239109-77239128 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 77239025 77240748 77239025 ID=Msa1125760;Name=Msa1125760
chr7_3 mRNA 77239025 77240748 77239025 ID=Msa1125760-mRNA-1;Parent=Msa1125760;Name=Msa1125760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=83|1|1|1|1|1|4|357|80
chr7_3 exon 77239025 77239142 77239025 ID=Msa1125760-mRNA-1:exon:21226;Parent=Msa1125760-mRNA-1
chr7_3 exon 77239251 77239273 77239251 ID=Msa1125760-mRNA-1:exon:21227;Parent=Msa1125760-mRNA-1
chr7_3 exon 77240095 77240216 77240095 ID=Msa1125760-mRNA-1:exon:21228;Parent=Msa1125760-mRNA-1
chr7_3 exon 77240329 77240748 77240329 ID=Msa1125760-mRNA-1:exon:21229;Parent=Msa1125760-mRNA-1
chr7_3 five_prime_UTR 77239025 77239107 77239025 ID=Msa1125760-mRNA-1:five_prime_utr;Parent=Msa1125760-mRNA-1
chr7_3 CDS 77239108 77239142 77239108 ID=Msa1125760-mRNA-1:cds;Parent=Msa1125760-mRNA-1
chr7_3 CDS 77239251 77239273 77239251 ID=Msa1125760-mRNA-1:cds;Parent=Msa1125760-mRNA-1
chr7_3 CDS 77240095 77240216 77240095 ID=Msa1125760-mRNA-1:cds;Parent=Msa1125760-mRNA-1
chr7_3 CDS 77240329 77240391 77240329 ID=Msa1125760-mRNA-1:cds;Parent=Msa1125760-mRNA-1
chr7_3 three_prime_UTR 77240392 77240748 77240392 ID=Msa1125760-mRNA-1:three_prime_utr;Parent=Msa1125760-mRNA-1
Gene Sequence

>Msa1125760

ATGAGTAGGTCAGGGCAGCCACCAGATTTGAAGAAGTACATGGACAAACAGCTTCAAATCAAGCTGAATGCAAATCGCATGATTGTTGGTACTCTCCGTGGCTTCGACCAATTTATGAATTTGGTTGTTGACAATACTGTGGAGGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGGTGATCAGAGGAAATAGTGTGGTCACTGTAGAGGCGCTTGAACCAGTGAACAGAAGCATCTAA

Protein sequence

>Msa1125760

MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRSI*