AlfalfaGEDB | Msa0664490

M. sativa cultivar zhongmu-4 / Msa0664490

KEGG: K01230
GO: GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006491 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901564
PFAM: PF01532.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664490	XP_013454577.1	90.641	577	11	2	1	534	1	577	0.0	1055

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664490	sp\|Q9C512\|MNS1_ARATH	72.826	552	95	7	1	508	1	541	0.0	780

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664490	A0A072UHK5	90.641	577	11	2	1	534	1	577	0.0	1055

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001520	Msa0664490	0.801690	7.995234e-49	-8.615850e-47
Msa0015480	Msa0664490	0.804654	1.947451e-49	-8.615850e-47
Msa0056450	Msa0664490	0.815398	9.437765e-52	-8.615850e-47
Msa0058600	Msa0664490	0.816516	5.311987e-52	-8.615850e-47
Msa0065680	Msa0664490	-0.800476	1.416028e-48	-8.615850e-47
Msa0085370	Msa0664490	0.800526	1.382947e-48	-8.615850e-47
Msa0089820	Msa0664490	0.801435	9.015503e-49	-8.615850e-47
Msa0097590	Msa0664490	0.803281	3.756460e-49	-8.615850e-47
Msa0100090	Msa0664490	0.811746	6.000350e-51	-8.615850e-47
Msa0105070	Msa0664490	0.801260	9.790126e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664490	MtrunA17_Chr4g0002301	90.641	577	11	2	1	534	1	577	0.0	1055
Msa0664490	MtrunA17_Chr0c31g0494131	71.041	442	101	1	118	532	5	446	0.0	635
Msa0664490	MtrunA17_Chr4g0071731	61.717	431	140	3	1	408	1	429	0.0	531
Msa0664490	MtrunA17_Chr2g0286021	38.996	518	227	17	71	503	114	627	3.64e-97	307
Msa0664490	MtrunA17_Chr4g0071721	63.253	166	31	1	397	532	33	198	2.74e-63	205
Msa0664490	MtrunA17_Chr1g0187981	31.849	449	253	10	91	501	46	479	3.96e-56	198
Msa0664490	MtrunA17_Chr4g0059431	30.426	470	255	11	94	505	39	494	1.35e-48	177
Msa0664490	MtrunA17_Chr0c31g0494141	37.589	141	63	3	1	118	1	139	2.21e-20	88.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664490	AT1G51590.1	72.826	552	95	7	1	508	1	541	0.0	780
Msa0664490	AT3G21160.1	69.257	579	120	7	1	532	1	568	0.0	773
Msa0664490	AT1G51590.2	80.320	437	58	2	100	508	1	437	0.0	724
Msa0664490	AT3G21160.2	70.120	415	97	4	1	398	1	405	0.0	567
Msa0664490	AT1G30000.1	39.718	496	212	15	92	503	128	620	2.69e-95	303
Msa0664490	AT1G30000.2	39.718	496	212	15	92	503	148	640	7.04e-95	302
Msa0664490	AT5G43710.3	31.126	453	254	8	91	503	39	473	5.45e-56	197
Msa0664490	AT5G43710.2	31.126	453	254	8	91	503	39	473	8.34e-56	196
Msa0664490	AT5G43710.1	30.921	456	257	8	91	506	39	476	1.59e-55	197
Msa0664490	AT1G27520.1	31.360	456	261	8	91	505	36	480	5.15e-54	192

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Find 154 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTCTGCTGATACTT+TGG	0.271291	4_4:-3485662	None:intergenic
AAAAGCATAGCAAGACGCTT+AGG	0.510186	4_4:-3481286	None:intergenic
AAAAGTGGTGTCAATAGCTT+TGG	0.429770	4_4:+3483491	Msa0664490:CDS
AAACCTTCTGCTGATACTTT+GGG	0.354260	4_4:-3485661	None:intergenic
AAACTTACCCCGGTCCATCC+AGG	0.536972	4_4:-3484411	None:intergenic
AAAGATCGTATGTACTAAGA+AGG	0.512574	4_4:-3484266	None:intergenic
AAAGTGCATGATGGCACTGC+CGG	0.479791	4_4:+3483071	Msa0664490:CDS
AACAAGACATACCAAGATTG+GGG	0.651954	4_4:+3487377	Msa0664490:CDS
AACATTATCAACTTGTCACA+AGG	0.621612	4_4:+3484375	Msa0664490:CDS
AACTAACAGGTCCACTAAAG+AGG	0.528572	4_4:+3483115	Msa0664490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATGAAGAAATACATACC+TGG	-	chr4_4:3481372-3481391	None:intergenic	30.0%
CTAGTGTTCATAGATCATAT+AGG	+	chr4_4:3481567-3481586	Msa0664490:intron	30.0%
ATAGGATTTGTAAGAAGGAA+AGG	+	chr4_4:3481585-3481604	Msa0664490:intron	30.0%
AAACTAAGAGCTAATCCAAA+TGG	-	chr4_4:3481689-3481708	None:intergenic	30.0%
TTGTTAAATAGAGGCTATGA+TGG	+	chr4_4:3481761-3481780	Msa0664490:intron	30.0%
TACAAGATAATGAGTAGTTG+TGG	+	chr4_4:3482377-3482396	Msa0664490:intron	30.0%
TAACTACCAATTTGGTTGTT+TGG	-	chr4_4:3482424-3482443	None:intergenic	30.0%
TCTTACCAAATTATGCAAGT+CGG	-	chr4_4:3482680-3482699	None:intergenic	30.0%
AATGAAAAGAAGGAATGAGA+TGG	+	chr4_4:3482795-3482814	Msa0664490:intron	30.0%
TTCTTACGAGAAATATGCAT+GGG	+	chr4_4:3483205-3483224	Msa0664490:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	3481208	3488271	3481208	ID=Msa0664490;Name=Msa0664490
chr4_4	mRNA	3481208	3488271	3481208	ID=Msa0664490-mRNA-1;Parent=Msa0664490;Name=Msa0664490-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0.83\|0.92\|1\|1\|1\|13\|348\|534
chr4_4	exon	3481208	3481324	3481208	ID=Msa0664490-mRNA-1:exon:1100;Parent=Msa0664490-mRNA-1
chr4_4	exon	3482646	3482693	3482646	ID=Msa0664490-mRNA-1:exon:1101;Parent=Msa0664490-mRNA-1
chr4_4	exon	3483056	3483244	3483056	ID=Msa0664490-mRNA-1:exon:1102;Parent=Msa0664490-mRNA-1
chr4_4	exon	3483482	3483594	3483482	ID=Msa0664490-mRNA-1:exon:1103;Parent=Msa0664490-mRNA-1
chr4_4	exon	3484051	3484116	3484051	ID=Msa0664490-mRNA-1:exon:1104;Parent=Msa0664490-mRNA-1
chr4_4	exon	3484254	3484425	3484254	ID=Msa0664490-mRNA-1:exon:1105;Parent=Msa0664490-mRNA-1
chr4_4	exon	3485590	3485679	3485590	ID=Msa0664490-mRNA-1:exon:1106;Parent=Msa0664490-mRNA-1
chr4_4	exon	3485784	3485908	3485784	ID=Msa0664490-mRNA-1:exon:1107;Parent=Msa0664490-mRNA-1
chr4_4	exon	3486055	3486120	3486055	ID=Msa0664490-mRNA-1:exon:1108;Parent=Msa0664490-mRNA-1
chr4_4	exon	3486358	3486466	3486358	ID=Msa0664490-mRNA-1:exon:1109;Parent=Msa0664490-mRNA-1
chr4_4	exon	3486567	3486665	3486567	ID=Msa0664490-mRNA-1:exon:1110;Parent=Msa0664490-mRNA-1
chr4_4	exon	3487296	3487466	3487296	ID=Msa0664490-mRNA-1:exon:1111;Parent=Msa0664490-mRNA-1
chr4_4	exon	3487684	3488271	3487684	ID=Msa0664490-mRNA-1:exon:1112;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3481208	3481324	3481208	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3482646	3482693	3482646	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3483056	3483244	3483056	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3483482	3483594	3483482	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3484051	3484116	3484051	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3484254	3484425	3484254	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3485590	3485679	3485590	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3485784	3485908	3485784	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3486055	3486120	3486055	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3486358	3486466	3486358	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3486567	3486665	3486567	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3487296	3487466	3487296	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	CDS	3487684	3487923	3487684	ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1
chr4_4	three_prime_UTR	3487924	3488271	3487924	ID=Msa0664490-mRNA-1:three_prime_utr;Parent=Msa0664490-mRNA-1

Gene Sequence

>Msa0664490

ATGGCGAGAGGGAGTAGATCAGTGAGTAGCAGTAGCAGTAAATGGAGATACTGTAATCCAGCTTATTACTTGAAGCGTCCTAAGCGTCTTGCTATGCTTTTCATCGTTTTTGTTTCGGTTGAAGTTGCTGAGCTACAGAAAGAAATAACCGACTTGCATAATTTGTTGGAAGAGTCAAATAAAGTGCATGATGGCACTGCCGGGAAGGTTGACTCGAAGGGAAAAACTAACAGGTCCACTAAAGAGGTCTTGGATAATCCCATTGATATCCAGAGAAGGGAAAAAGTAAAAGAAGCAATGCTTCATGCTTGGAGTTCTTACGAGAAATATGCATGGGGCCAAGATGAACTACAGCCTCAGTCAAAAAGTGGTGTCAATAGCTTTGGAGGTCTTGGAGCAACTTTAATTGATTCTCTTGATACACTATACATTATGGGTCTCGATGAACAGTTTCAGAAAGCCCGAGACTGGGTCGCAAACTCTCTGGATTTTAACAAGGATTATGAAGCAAGTGTTTTCGAGACAACCATAAGAGTAGTAGGTGGCCTTCTTAGTACATACGATCTTTCAGGCGACAAAATTTTCCTTGACAAAGCCAGAGATATTGCAGATAGATTACTGCCTGCATGGAACACACCTACAGGAATTCCTTATAACATTATCAACTTGTCACAAGGACGTGCACACAATCCTGGATGGACCGGGGGTGAGAGTATTTTGGCAGATTCTGGCACTGAACAACTAGAGTTCATTGCTCTATCTCAAAGGACCGGAGACCCAAAGTATCAGCAGAAGGTTGAGAATGTAATAACAGTGCTTAATAAAACATTCCCTGATGATGGATTACTTCCTATCTATATCAATCCTCATAGTGGAACAACAGGCTACTCTCCTATCACATTTGGCGCCATGGGTGATAGTTTTTATGAATACTTGCTTAAAGTTTGGGTACAAGGGAATAAGACTCTAGCTGTAAAACTTTATAGAGATATGTGGGAGAAATCAATGAAAGGTCTGTTAAGTTTGATTCGGAAGTCAACGCCATCTTCCTTTACTTATATATGTGAGAAGAGTGGAGGATCTCTCACTGACAAAATGGATGAACTAGCGTGCTTTGCTCCAGGGATGCTTGCTTTGGGATCATCTGGTTATGGTCCTGATGATTCGCAGAAGTTTATGTCACTTGCGGAAGAGGACATGAGTGTGGGTACATCATGGAACATCCTGAGGCCAGAGACAGTTGAGTCACTCTTCTACCTTTGGCGCCTAACCGGCAACAAGACATACCAAGATTGGGGTTGGAATATATTTCAAGCTTTCGAGAAGAACTCTCGCATAGAGTCGGGCTATGTTGGACTAAAGGATGTTAACACTGGTGTTAAAGACAACATGATGCAAAGTTTCTTTCTCGCGGAGACACTGAAGTATCTTTATCTTCTCTTTTCGCCTTCTTCGGTCATTCCATTAGATGAATGGGTATTCAACACAGAAGCACACCCTTTGAGGATTGTGACAAGGAACGAAGCGGAACCTGTTAAGAACTCAAATGAGAAGCAAAAATCTTTTCCTAGAATAGGTGGCAGAAAGGAAGGTCGGTCGGGTTAG

Protein sequence

>Msa0664490

MARGSRSVSSSSSKWRYCNPAYYLKRPKRLAMLFIVFVSVEVAELQKEITDLHNLLEESNKVHDGTAGKVDSKGKTNRSTKEVLDNPIDIQRREKVKEAMLHAWSSYEKYAWGQDELQPQSKSGVNSFGGLGATLIDSLDTLYIMGLDEQFQKARDWVANSLDFNKDYEASVFETTIRVVGGLLSTYDLSGDKIFLDKARDIADRLLPAWNTPTGIPYNIINLSQGRAHNPGWTGGESILADSGTEQLEFIALSQRTGDPKYQQKVENVITVLNKTFPDDGLLPIYINPHSGTTGYSPITFGAMGDSFYEYLLKVWVQGNKTLAVKLYRDMWEKSMKGLLSLIRKSTPSSFTYICEKSGGSLTDKMDELACFAPGMLALGSSGYGPDDSQKFMSLAEEDMSVGTSWNILRPETVESLFYLWRLTGNKTYQDWGWNIFQAFEKNSRIESGYVGLKDVNTGVKDNMMQSFFLAETLKYLYLLFSPSSVIPLDEWVFNTEAHPLRIVTRNEAEPVKNSNEKQKSFPRIGGRKEGRSG*