Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664490 | XP_013454577.1 | 90.641 | 577 | 11 | 2 | 1 | 534 | 1 | 577 | 0.0 | 1055 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664490 | sp|Q9C512|MNS1_ARATH | 72.826 | 552 | 95 | 7 | 1 | 508 | 1 | 541 | 0.0 | 780 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664490 | A0A072UHK5 | 90.641 | 577 | 11 | 2 | 1 | 534 | 1 | 577 | 0.0 | 1055 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001520 | Msa0664490 | 0.801690 | 7.995234e-49 | -8.615850e-47 |
| Msa0015480 | Msa0664490 | 0.804654 | 1.947451e-49 | -8.615850e-47 |
| Msa0056450 | Msa0664490 | 0.815398 | 9.437765e-52 | -8.615850e-47 |
| Msa0058600 | Msa0664490 | 0.816516 | 5.311987e-52 | -8.615850e-47 |
| Msa0065680 | Msa0664490 | -0.800476 | 1.416028e-48 | -8.615850e-47 |
| Msa0085370 | Msa0664490 | 0.800526 | 1.382947e-48 | -8.615850e-47 |
| Msa0089820 | Msa0664490 | 0.801435 | 9.015503e-49 | -8.615850e-47 |
| Msa0097590 | Msa0664490 | 0.803281 | 3.756460e-49 | -8.615850e-47 |
| Msa0100090 | Msa0664490 | 0.811746 | 6.000350e-51 | -8.615850e-47 |
| Msa0105070 | Msa0664490 | 0.801260 | 9.790126e-49 | -8.615850e-47 |
| Msa0109590 | Msa0664490 | 0.823328 | 1.469835e-53 | -8.615850e-47 |
| Msa0615220 | Msa0664490 | 0.829788 | 4.231396e-55 | -8.615850e-47 |
| Msa0620620 | Msa0664490 | 0.825873 | 3.697567e-54 | -8.615850e-47 |
| Msa0624960 | Msa0664490 | 0.800414 | 1.457512e-48 | -8.615850e-47 |
| Msa0638350 | Msa0664490 | 0.810143 | 1.334437e-50 | -8.615850e-47 |
| Msa0661320 | Msa0664490 | 0.823617 | 1.257907e-53 | -8.615850e-47 |
| Msa0664490 | Msa0682140 | 0.801060 | 1.075973e-48 | -8.615850e-47 |
| Msa0664490 | Msa0703910 | 0.802878 | 4.551241e-49 | -8.615850e-47 |
| Msa0664490 | Msa0705190 | 0.809342 | 1.984484e-50 | -8.615850e-47 |
| Msa0664490 | Msa0705390 | 0.811483 | 6.844336e-51 | -8.615850e-47 |
| Msa0664490 | Msa0707250 | 0.802614 | 5.159501e-49 | -8.615850e-47 |
| Msa0664490 | Msa0711150 | 0.836454 | 9.268508e-57 | -8.615850e-47 |
| Msa0664490 | Msa0715410 | 0.825564 | 4.375295e-54 | -8.615850e-47 |
| Msa0664490 | Msa0763890 | 0.802633 | 5.114026e-49 | -8.615850e-47 |
| Msa0664490 | Msa0763920 | 0.813546 | 2.423109e-51 | -8.615850e-47 |
| Msa0664490 | Msa0817460 | 0.823257 | 1.526675e-53 | -8.615850e-47 |
| Msa0664490 | Msa0826150 | 0.810909 | 9.117713e-51 | -8.615850e-47 |
| Msa0664490 | Msa0826760 | 0.818501 | 1.896820e-52 | -8.615850e-47 |
| Msa0664490 | Msa0830230 | 0.820044 | 8.443261e-53 | -8.615850e-47 |
| Msa0664490 | Msa0831850 | 0.806571 | 7.709925e-50 | -8.615850e-47 |
| Msa0664490 | Msa0832090 | 0.802638 | 5.101400e-49 | -8.615850e-47 |
| Msa0664490 | Msa0844110 | 0.815012 | 1.149454e-51 | -8.615850e-47 |
| Msa0664490 | Msa0861470 | 0.806182 | 9.312960e-50 | -8.615850e-47 |
| Msa0664490 | Msa0861570 | 0.806449 | 8.181315e-50 | -8.615850e-47 |
| Msa0664490 | Msa0868160 | 0.818049 | 2.400942e-52 | -8.615850e-47 |
| Msa0664490 | Msa0890550 | 0.821517 | 3.871743e-53 | -8.615850e-47 |
| Msa0664490 | Msa0921420 | 0.817922 | 2.564944e-52 | -8.615850e-47 |
| Msa0664490 | Msa0944870 | 0.805429 | 1.340682e-49 | -8.615850e-47 |
| Msa0664490 | Msa0960390 | 0.801557 | 8.512802e-49 | -8.615850e-47 |
| Msa0664490 | Msa1036410 | 0.800726 | 1.258832e-48 | -8.615850e-47 |
| Msa0664490 | Msa1052330 | 0.840420 | 8.788058e-58 | -8.615850e-47 |
| Msa0664490 | Msa1064250 | 0.826396 | 2.775312e-54 | -8.615850e-47 |
| Msa0664490 | Msa1071320 | 0.802654 | 5.062278e-49 | -8.615850e-47 |
| Msa0664490 | Msa1089320 | 0.810090 | 1.369925e-50 | -8.615850e-47 |
| Msa0664490 | Msa1095650 | 0.805146 | 1.537075e-49 | -8.615850e-47 |
| Msa0664490 | Msa1107190 | 0.807344 | 5.292302e-50 | -8.615850e-47 |
| Msa0664490 | Msa1111870 | 0.863912 | 1.774129e-64 | -8.615850e-47 |
| Msa0664490 | Msa1121110 | 0.807405 | 5.136463e-50 | -8.615850e-47 |
| Msa0664490 | Msa1142670 | 0.800841 | 1.192713e-48 | -8.615850e-47 |
| Msa0664490 | Msa1144040 | 0.807853 | 4.125279e-50 | -8.615850e-47 |
| Msa0664490 | Msa1180500 | 0.809495 | 1.840017e-50 | -8.615850e-47 |
| Msa0664490 | Msa1181250 | 0.812669 | 3.773900e-51 | -8.615850e-47 |
| Msa0664490 | Msa1181330 | 0.806897 | 6.581590e-50 | -8.615850e-47 |
| Msa0664490 | Msa1227810 | 0.806165 | 9.388761e-50 | -8.615850e-47 |
| Msa0664490 | Msa1231840 | 0.804673 | 1.929295e-49 | -8.615850e-47 |
| Msa0664490 | Msa1258370 | 0.804000 | 2.665414e-49 | -8.615850e-47 |
| Msa0664490 | Msa1270660 | 0.807856 | 4.120956e-50 | -8.615850e-47 |
| Msa0664490 | Msa1305350 | 0.805045 | 1.613489e-49 | -8.615850e-47 |
| Msa0664490 | Msa1312520 | 0.809976 | 1.450046e-50 | -8.615850e-47 |
| Msa0664490 | Msa1355890 | 0.827370 | 1.624476e-54 | -8.615850e-47 |
| Msa0664490 | Msa1358670 | 0.822972 | 1.779120e-53 | -8.615850e-47 |
| Msa0664490 | Msa1364210 | 0.811403 | 7.125878e-51 | -8.615850e-47 |
| Msa0664490 | Msa1380220 | 0.806019 | 1.008018e-49 | -8.615850e-47 |
| Msa0664490 | Msa1381480 | 0.832486 | 9.197879e-56 | -8.615850e-47 |
| Msa0664490 | Msa1382790 | 0.821049 | 4.964328e-53 | -8.615850e-47 |
| Msa0664490 | Msa1401460 | 0.817452 | 3.274085e-52 | -8.615850e-47 |
| Msa0664490 | Msa1418850 | 0.805699 | 1.177005e-49 | -8.615850e-47 |
| Msa0664490 | Msa1454620 | 0.803394 | 3.560391e-49 | -8.615850e-47 |
| Msa0664490 | Msa1457160 | 0.808930 | 2.431055e-50 | -8.615850e-47 |
| Msa0664490 | Msa1462360 | 0.817894 | 2.602466e-52 | -8.615850e-47 |
| Msa0127020 | Msa0664490 | 0.801089 | 1.061524e-48 | -8.615850e-47 |
| Msa0138020 | Msa0664490 | 0.819259 | 1.275693e-52 | -8.615850e-47 |
| Msa0160670 | Msa0664490 | 0.806309 | 8.756609e-50 | -8.615850e-47 |
| Msa0174390 | Msa0664490 | 0.803560 | 3.288795e-49 | -8.615850e-47 |
| Msa0197660 | Msa0664490 | 0.814566 | 1.443434e-51 | -8.615850e-47 |
| Msa0217700 | Msa0664490 | 0.800048 | 1.729967e-48 | -8.615850e-47 |
| Msa0225670 | Msa0664490 | 0.802118 | 6.529292e-49 | -8.615850e-47 |
| Msa0233370 | Msa0664490 | 0.801790 | 7.623474e-49 | -8.615850e-47 |
| Msa0387370 | Msa0664490 | 0.803742 | 3.015238e-49 | -8.615850e-47 |
| Msa0430920 | Msa0664490 | 0.800788 | 1.223028e-48 | -8.615850e-47 |
| Msa0433410 | Msa0664490 | -0.800353 | 1.499531e-48 | -8.615850e-47 |
| Msa0434180 | Msa0664490 | 0.817730 | 2.833259e-52 | -8.615850e-47 |
| Msa0435690 | Msa0664490 | 0.819047 | 1.426045e-52 | -8.615850e-47 |
| Msa0450400 | Msa0664490 | -0.804738 | 1.870636e-49 | -8.615850e-47 |
| Msa0468320 | Msa0664490 | 0.812890 | 3.376101e-51 | -8.615850e-47 |
| Msa0476680 | Msa0664490 | 0.804836 | 1.784314e-49 | -8.615850e-47 |
| Msa0481030 | Msa0664490 | 0.800222 | 1.594467e-48 | -8.615850e-47 |
| Msa0481280 | Msa0664490 | 0.802095 | 6.599765e-49 | -8.615850e-47 |
| Msa0482180 | Msa0664490 | 0.808351 | 3.232350e-50 | -8.615850e-47 |
| Msa0239800 | Msa0664490 | 0.818518 | 1.879988e-52 | -8.615850e-47 |
| Msa0241140 | Msa0664490 | 0.820223 | 7.685098e-53 | -8.615850e-47 |
| Msa0241470 | Msa0664490 | 0.815927 | 7.192872e-52 | -8.615850e-47 |
| Msa0257500 | Msa0664490 | 0.802513 | 5.412973e-49 | -8.615850e-47 |
| Msa0259220 | Msa0664490 | 0.810763 | 9.804026e-51 | -8.615850e-47 |
| Msa0296820 | Msa0664490 | 0.818647 | 1.757486e-52 | -8.615850e-47 |
| Msa0304100 | Msa0664490 | 0.806551 | 7.785789e-50 | -8.615850e-47 |
| Msa0317510 | Msa0664490 | 0.809081 | 2.256643e-50 | -8.615850e-47 |
| Msa0317970 | Msa0664490 | 0.800841 | 1.192818e-48 | -8.615850e-47 |
| Msa0336310 | Msa0664490 | 0.807306 | 5.389780e-50 | -8.615850e-47 |
| Msa0336320 | Msa0664490 | 0.806380 | 8.461908e-50 | -8.615850e-47 |
| Msa0340690 | Msa0664490 | 0.843752 | 1.154994e-58 | -8.615850e-47 |
| Msa0340710 | Msa0664490 | 0.830695 | 2.540647e-55 | -8.615850e-47 |
| Msa0341840 | Msa0664490 | 0.812296 | 4.554297e-51 | -8.615850e-47 |
| Msa0342010 | Msa0664490 | 0.814979 | 1.168846e-51 | -8.615850e-47 |
| Msa0357830 | Msa0664490 | 0.802296 | 6.001253e-49 | -8.615850e-47 |
| Msa0512870 | Msa0664490 | 0.803596 | 3.232653e-49 | -8.615850e-47 |
| Msa0521010 | Msa0664490 | 0.810938 | 8.986979e-51 | -8.615850e-47 |
| Msa0521670 | Msa0664490 | 0.843261 | 1.562587e-58 | -8.615850e-47 |
| Msa0530100 | Msa0664490 | 0.956408 | 3.167849e-114 | -8.615850e-47 |
| Msa0530290 | Msa0664490 | 0.803895 | 2.802156e-49 | -8.615850e-47 |
| Msa0532930 | Msa0664490 | 0.805605 | 1.231657e-49 | -8.615850e-47 |
| Msa0532980 | Msa0664490 | 0.808797 | 2.596063e-50 | -8.615850e-47 |
| Msa0532990 | Msa0664490 | 0.838165 | 3.381786e-57 | -8.615850e-47 |
| Msa0597000 | Msa0664490 | 0.808743 | 2.665867e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664490 | MtrunA17_Chr4g0002301 | 90.641 | 577 | 11 | 2 | 1 | 534 | 1 | 577 | 0.0 | 1055 |
| Msa0664490 | MtrunA17_Chr0c31g0494131 | 71.041 | 442 | 101 | 1 | 118 | 532 | 5 | 446 | 0.0 | 635 |
| Msa0664490 | MtrunA17_Chr4g0071731 | 61.717 | 431 | 140 | 3 | 1 | 408 | 1 | 429 | 0.0 | 531 |
| Msa0664490 | MtrunA17_Chr2g0286021 | 38.996 | 518 | 227 | 17 | 71 | 503 | 114 | 627 | 3.64e-97 | 307 |
| Msa0664490 | MtrunA17_Chr4g0071721 | 63.253 | 166 | 31 | 1 | 397 | 532 | 33 | 198 | 2.74e-63 | 205 |
| Msa0664490 | MtrunA17_Chr1g0187981 | 31.849 | 449 | 253 | 10 | 91 | 501 | 46 | 479 | 3.96e-56 | 198 |
| Msa0664490 | MtrunA17_Chr4g0059431 | 30.426 | 470 | 255 | 11 | 94 | 505 | 39 | 494 | 1.35e-48 | 177 |
| Msa0664490 | MtrunA17_Chr0c31g0494141 | 37.589 | 141 | 63 | 3 | 1 | 118 | 1 | 139 | 2.21e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664490 | AT1G51590.1 | 72.826 | 552 | 95 | 7 | 1 | 508 | 1 | 541 | 0.0 | 780 |
| Msa0664490 | AT3G21160.1 | 69.257 | 579 | 120 | 7 | 1 | 532 | 1 | 568 | 0.0 | 773 |
| Msa0664490 | AT1G51590.2 | 80.320 | 437 | 58 | 2 | 100 | 508 | 1 | 437 | 0.0 | 724 |
| Msa0664490 | AT3G21160.2 | 70.120 | 415 | 97 | 4 | 1 | 398 | 1 | 405 | 0.0 | 567 |
| Msa0664490 | AT1G30000.1 | 39.718 | 496 | 212 | 15 | 92 | 503 | 128 | 620 | 2.69e-95 | 303 |
| Msa0664490 | AT1G30000.2 | 39.718 | 496 | 212 | 15 | 92 | 503 | 148 | 640 | 7.04e-95 | 302 |
| Msa0664490 | AT5G43710.3 | 31.126 | 453 | 254 | 8 | 91 | 503 | 39 | 473 | 5.45e-56 | 197 |
| Msa0664490 | AT5G43710.2 | 31.126 | 453 | 254 | 8 | 91 | 503 | 39 | 473 | 8.34e-56 | 196 |
| Msa0664490 | AT5G43710.1 | 30.921 | 456 | 257 | 8 | 91 | 506 | 39 | 476 | 1.59e-55 | 197 |
| Msa0664490 | AT1G27520.1 | 31.360 | 456 | 261 | 8 | 91 | 505 | 36 | 480 | 5.15e-54 | 192 |
Find 154 sgRNAs with CRISPR-Local
Find 480 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAAATGCACTCAAAATT+TGG | 0.175445 | 4_4:-3488165 | None:intergenic |
| GGTTCCACAAAATAATATTA+AGG | 0.181740 | 4_4:-3488144 | None:intergenic |
| CTTAGTACATACGATCTTTC+AGG | 0.182763 | 4_4:+3484270 | Msa0664490:CDS |
| TCTTGATACACTATACATTA+TGG | 0.190941 | 4_4:+3483541 | Msa0664490:CDS |
| AATAACCGACTTGCATAATT+TGG | 0.194478 | 4_4:+3482672 | Msa0664490:CDS |
| ACGGGGAATTTGTTCCATTT+TGG | 0.211193 | 4_4:+3487985 | Msa0664490:three_prime_UTR |
| TGCTCCAGGGATGCTTGCTT+TGG | 0.216455 | 4_4:+3486587 | Msa0664490:CDS |
| ATGAATACTTGCTTAAAGTT+TGG | 0.236436 | 4_4:+3486060 | Msa0664490:CDS |
| CTTCATATCTTGACTAAAAT+AGG | 0.245731 | 4_4:+3488114 | Msa0664490:three_prime_UTR |
| TCCTTTCTGCCACCTATTCT+AGG | 0.259317 | 4_4:-3487885 | None:intergenic |
| AAAACCTTCTGCTGATACTT+TGG | 0.271291 | 4_4:-3485662 | None:intergenic |
| TTTCAAGGGTGAGAGTATTT+TGG | 0.274453 | 4_4:+3485583 | Msa0664490:intron |
| GCTTTGGGATCATCTGGTTA+TGG | 0.305745 | 4_4:+3486603 | Msa0664490:CDS |
| CTCTAGCTGTAAAACTTTAT+AGG | 0.313818 | 4_4:+3486099 | Msa0664490:CDS |
| TGAATACTTGCTTAAAGTTT+GGG | 0.318324 | 4_4:+3486061 | Msa0664490:CDS |
| GACAAGTTGATAATGTTATA+AGG | 0.323001 | 4_4:-3484369 | None:intergenic |
| GTCAATAGCTTTGGAGGTCT+TGG | 0.324765 | 4_4:+3483500 | Msa0664490:CDS |
| TTCTCATTTGAGTTCTTAAC+AGG | 0.325798 | 4_4:-3487849 | None:intergenic |
| AATTCCCCGTCTTTGAATCT+TGG | 0.329487 | 4_4:-3487972 | None:intergenic |
| TGAAGGTTCTGACATCTTAC+AGG | 0.336158 | 4_4:-3488010 | None:intergenic |
| GCTCCAGGGATGCTTGCTTT+GGG | 0.341072 | 4_4:+3486588 | Msa0664490:CDS |
| TGAGTAGCAGTAGCAGTAAA+TGG | 0.341324 | 4_4:+3481230 | Msa0664490:CDS |
| GTTCCACAAAATAATATTAA+GGG | 0.343574 | 4_4:-3488143 | None:intergenic |
| TCCCTTCGAGTCAACCTTCC+CGG | 0.344813 | 4_4:-3483090 | None:intergenic |
| CTTGATACACTATACATTAT+GGG | 0.345860 | 4_4:+3483542 | Msa0664490:CDS |
| ACATCTTACAGGCTCCAAAA+TGG | 0.350692 | 4_4:-3487999 | None:intergenic |
| ATCTTGGTATGTCTTGTTGC+CGG | 0.354146 | 4_4:-3487372 | None:intergenic |
| AAACCTTCTGCTGATACTTT+GGG | 0.354260 | 4_4:-3485661 | None:intergenic |
| TTGGGAAGCAATTGTGAAAC+AGG | 0.354810 | 4_4:+3488033 | Msa0664490:three_prime_UTR |
| TTGAATACCCATTCATCTAA+TGG | 0.357605 | 4_4:-3487780 | None:intergenic |
| TATAGAATGCACAGATATAT+AGG | 0.370175 | 4_4:-3488208 | None:intergenic |
| ATGCTTGCTTTGGGATCATC+TGG | 0.372484 | 4_4:+3486597 | Msa0664490:CDS |
| CGCATAGAGTCGGGCTATGT+TGG | 0.374873 | 4_4:+3487434 | Msa0664490:CDS |
| TTCCCTTCTCTGGATATCAA+TGG | 0.381049 | 4_4:-3483150 | None:intergenic |
| CGGTCATTCCATTAGATGAA+TGG | 0.381669 | 4_4:+3487772 | Msa0664490:CDS |
| TCCCTTCTCTGGATATCAAT+GGG | 0.384629 | 4_4:-3483149 | None:intergenic |
| TTGAGTCACTCTTCTACCTT+TGG | 0.392975 | 4_4:+3487342 | Msa0664490:CDS |
| CAGGTCCACTAAAGAGGTCT+TGG | 0.393953 | 4_4:+3483121 | Msa0664490:CDS |
| CATTTGGCGCCATGGGTGAT+AGG | 0.398474 | 4_4:+3485887 | Msa0664490:CDS |
| TCCTATCACATTTGGCGCCA+TGG | 0.401558 | 4_4:+3485879 | Msa0664490:CDS |
| GTAATATAGGAAATAGAAAT+AGG | 0.404305 | 4_4:+3488090 | Msa0664490:three_prime_UTR |
| CAGCTGGGTCGCAAACTCTC+TGG | 0.407952 | 4_4:+3484048 | Msa0664490:intron |
| ATAGGAAGTAATCCATCATC+AGG | 0.411882 | 4_4:-3485820 | None:intergenic |
| CTACAAATGATGAGTAATAT+AGG | 0.413146 | 4_4:+3488077 | Msa0664490:three_prime_UTR |
| GCAACAAGACATACCAAGAT+TGG | 0.418963 | 4_4:+3487375 | Msa0664490:CDS |
| CTGCTGATACTTTGGGTCTC+CGG | 0.423512 | 4_4:-3485654 | None:intergenic |
| AATAAAACATTCCCTGATGA+TGG | 0.424362 | 4_4:+3485808 | Msa0664490:CDS |
| TAAGATGTCAGAACCTTCAT+TGG | 0.424861 | 4_4:+3488014 | Msa0664490:three_prime_UTR |
| TCACCACAATCCAGAGTAGT+AGG | 0.425238 | 4_4:+3484240 | Msa0664490:intron |
| TTGCTTAAAGTTTGGGTACA+AGG | 0.427453 | 4_4:+3486068 | Msa0664490:CDS |
| ACACAGAAGCACACCCTTTG+AGG | 0.428655 | 4_4:+3487802 | Msa0664490:CDS |
| AAAAGTGGTGTCAATAGCTT+TGG | 0.429770 | 4_4:+3483491 | Msa0664490:CDS |
| TTCTACCTTTGGCGCCTAAC+CGG | 0.433958 | 4_4:+3487353 | Msa0664490:CDS |
| GGCTACTCTCCTATCACATT+TGG | 0.436591 | 4_4:+3485871 | Msa0664490:CDS |
| ACCATACCTGTAGTTCATCT+TGG | 0.442790 | 4_4:-3483229 | None:intergenic |
| GAACTAGCGTGCTTTGCTCC+AGG | 0.446640 | 4_4:+3486573 | Msa0664490:CDS |
| ATTATCCAAGACCTCTTTAG+TGG | 0.450428 | 4_4:-3483126 | None:intergenic |
| CAACAAGACATACCAAGATT+GGG | 0.450877 | 4_4:+3487376 | Msa0664490:CDS |
| TCACAATTGCTTCCCAATGA+AGG | 0.454499 | 4_4:-3488027 | None:intergenic |
| GTTTATGTCACTTGCGGAAG+AGG | 0.455285 | 4_4:+3486644 | Msa0664490:CDS |
| ATATATTCCAACCCCAATCT+TGG | 0.459533 | 4_4:-3487388 | None:intergenic |
| AAGAGTGACTCAACTGTCTC+TGG | 0.462962 | 4_4:-3487332 | None:intergenic |
| GGTCATTCCATTAGATGAAT+GGG | 0.464425 | 4_4:+3487773 | Msa0664490:CDS |
| AATCCTCATAGTGGAACAAC+AGG | 0.466061 | 4_4:+3485850 | Msa0664490:CDS |
| TAATCTATCTGCAATATCTC+TGG | 0.470494 | 4_4:-3484316 | None:intergenic |
| AAGGTCTGTTAAGTTTGATT+CGG | 0.471042 | 4_4:+3486381 | Msa0664490:CDS |
| GATCCCAAAGCAAGCATCCC+TGG | 0.472500 | 4_4:-3486591 | None:intergenic |
| CAAGGACGTGCACACAATCC+TGG | 0.473872 | 4_4:+3484393 | Msa0664490:CDS |
| GCACACAATCCTGGATGGAC+CGG | 0.474244 | 4_4:+3484402 | Msa0664490:CDS |
| GGTATGTCTTGTTGCCGGTT+AGG | 0.474868 | 4_4:-3487367 | None:intergenic |
| ACTCAACTGTCTCTGGCCTC+AGG | 0.476268 | 4_4:-3487325 | None:intergenic |
| GGCAGAAAGGAAGGTCGGTC+GGG | 0.477322 | 4_4:+3487897 | Msa0664490:CDS |
| AAAGTGCATGATGGCACTGC+CGG | 0.479791 | 4_4:+3483071 | Msa0664490:CDS |
| TAGCCTGTTGTTCCACTATG+AGG | 0.480434 | 4_4:-3485853 | None:intergenic |
| CCTATCACATTTGGCGCCAT+GGG | 0.481889 | 4_4:+3485880 | Msa0664490:CDS |
| GGACGCTTCAAGTAATAAGC+TGG | 0.482423 | 4_4:-3481265 | None:intergenic |
| ATCTATATCAATCCTCATAG+TGG | 0.483288 | 4_4:+3485841 | Msa0664490:CDS |
| ATCTTTAAAACAGAGATATG+TGG | 0.488082 | 4_4:+3486345 | Msa0664490:intron |
| CTATAGAAGACAGATACTAT+AGG | 0.490465 | 4_4:+3488226 | Msa0664490:three_prime_UTR |
| AGTGGTGTCAATAGCTTTGG+AGG | 0.491088 | 4_4:+3483494 | Msa0664490:CDS |
| ATAAACTTCTGCGAATCATC+AGG | 0.492014 | 4_4:-3486627 | None:intergenic |
| CTATGAGGATTGATATAGAT+AGG | 0.493737 | 4_4:-3485838 | None:intergenic |
| CCCATGGCGCCAAATGTGAT+AGG | 0.494378 | 4_4:-3485880 | None:intergenic |
| TTCAACCAAGATTCAAAGAC+GGG | 0.500517 | 4_4:+3487967 | Msa0664490:three_prime_UTR |
| CAGATAGATTACTGCCTGCA+TGG | 0.503951 | 4_4:+3484328 | Msa0664490:CDS |
| CCTGCATGGAACACACCTAC+AGG | 0.506080 | 4_4:+3484342 | Msa0664490:CDS |
| CATATATAAGTAAAGGAAGA+TGG | 0.506462 | 4_4:-3486413 | None:intergenic |
| CCTGTAGGTGTGTTCCATGC+AGG | 0.506768 | 4_4:-3484342 | None:intergenic |
| AAGAAGCAATGCTTCATGCT+TGG | 0.508050 | 4_4:+3483180 | Msa0664490:CDS |
| AAAAGCATAGCAAGACGCTT+AGG | 0.510186 | 4_4:-3481286 | None:intergenic |
| AAGAACTCTCGCATAGAGTC+GGG | 0.510675 | 4_4:+3487425 | Msa0664490:CDS |
| GTCGGGCTATGTTGGACTAA+AGG | 0.512086 | 4_4:+3487442 | Msa0664490:CDS |
| TCTAATGGAATGACCGAAGA+AGG | 0.512329 | 4_4:-3487765 | None:intergenic |
| AAAGATCGTATGTACTAAGA+AGG | 0.512574 | 4_4:-3484266 | None:intergenic |
| TCCTAGAATAGGTGGCAGAA+AGG | 0.513208 | 4_4:+3487884 | Msa0664490:CDS |
| CACACAATCCTGGATGGACC+GGG | 0.515187 | 4_4:+3484403 | Msa0664490:CDS |
| CTTCTCACATATATAAGTAA+AGG | 0.516300 | 4_4:-3486420 | None:intergenic |
| TGCTTAAAGTTTGGGTACAA+GGG | 0.520166 | 4_4:+3486069 | Msa0664490:CDS |
| TGGCAGAAAGGAAGGTCGGT+CGG | 0.523530 | 4_4:+3487896 | Msa0664490:CDS |
| AACTAACAGGTCCACTAAAG+AGG | 0.528572 | 4_4:+3483115 | Msa0664490:CDS |
| TCTTTAAAACAGAGATATGT+GGG | 0.530966 | 4_4:+3486346 | Msa0664490:intron |
| ATCTTGACTAAAATAGGTTG+TGG | 0.532183 | 4_4:+3488120 | Msa0664490:three_prime_UTR |
| TTCCTTGTCACAATCCTCAA+AGG | 0.532807 | 4_4:-3487816 | None:intergenic |
| AAACTTACCCCGGTCCATCC+AGG | 0.536972 | 4_4:-3484411 | None:intergenic |
| TGCCGGGAAGGTTGACTCGA+AGG | 0.537750 | 4_4:+3483088 | Msa0664490:CDS |
| TCTTTGAATCTTGGTTGAAG+TGG | 0.543277 | 4_4:-3487963 | None:intergenic |
| TCCTTGTCACAATCCTCAAA+GGG | 0.549191 | 4_4:-3487815 | None:intergenic |
| TTCTTACGAGAAATATGCAT+GGG | 0.549744 | 4_4:+3483205 | Msa0664490:CDS |
| AAGTGCATGATGGCACTGCC+GGG | 0.556936 | 4_4:+3483072 | Msa0664490:CDS |
| AAGATGTCAGAACCTTCATT+GGG | 0.557909 | 4_4:+3488015 | Msa0664490:three_prime_UTR |
| CTCACTTCCCAGGTTAACAC+TGG | 0.559131 | 4_4:+3487672 | Msa0664490:intron |
| AACTAGCGTGCTTTGCTCCA+GGG | 0.559285 | 4_4:+3486574 | Msa0664490:CDS |
| AGAATAGGTGGCAGAAAGGA+AGG | 0.566046 | 4_4:+3487888 | Msa0664490:CDS |
| AGACATACCAAGATTGGGGT+TGG | 0.568978 | 4_4:+3487381 | Msa0664490:CDS |
| ACATGAGTGTGGGTACATCA+TGG | 0.569922 | 4_4:+3487297 | Msa0664490:CDS |
| TCCCATTGATATCCAGAGAA+GGG | 0.570283 | 4_4:+3483148 | Msa0664490:CDS |
| TGTTGCCGGTTAGGCGCCAA+AGG | 0.570883 | 4_4:-3487358 | None:intergenic |
| ATGGGGCCAAGATGAACTAC+AGG | 0.571368 | 4_4:+3483223 | Msa0664490:CDS |
| CAATATCTCTGGCTTTGTCA+AGG | 0.571901 | 4_4:-3484305 | None:intergenic |
| GAAGAACTCTCGCATAGAGT+CGG | 0.574661 | 4_4:+3487424 | Msa0664490:CDS |
| GCCGGGAAGGTTGACTCGAA+GGG | 0.576993 | 4_4:+3483089 | Msa0664490:CDS |
| ATCCCATTGATATCCAGAGA+AGG | 0.596496 | 4_4:+3483147 | Msa0664490:CDS |
| ATTGCTCTATCTCAAAGGAC+CGG | 0.598269 | 4_4:+3485635 | Msa0664490:CDS |
| ATACATGATTTATGTAACTG+AGG | 0.598804 | 4_4:+3488185 | Msa0664490:three_prime_UTR |
| TCTTACCAAATTATGCAAGT+CGG | 0.598941 | 4_4:-3482677 | None:intergenic |
| ATCTTTCGAAAATGGCGAGA+GGG | 0.599552 | 4_4:+3481197 | None:intergenic |
| AGTTCATTGCTCTATCTCAA+AGG | 0.605447 | 4_4:+3485630 | Msa0664490:CDS |
| GCAGAAGTTTATGTCACTTG+CGG | 0.606147 | 4_4:+3486638 | Msa0664490:CDS |
| AGTGGTTCATCAACTAGTCA+TGG | 0.606457 | 4_4:-3487945 | None:intergenic |
| ATGTTATAAGGAATTCCTGT+AGG | 0.608699 | 4_4:-3484357 | None:intergenic |
| TCATGGTAGAGAAGCATGAA+CGG | 0.611540 | 4_4:-3487928 | None:intergenic |
| ACTTATATATGTGAGAAGAG+TGG | 0.613725 | 4_4:+3486425 | Msa0664490:CDS |
| GACGTGCACACAATCCTGGA+TGG | 0.617017 | 4_4:+3484397 | Msa0664490:CDS |
| ATGTGGGAGAAATCAATGAA+AGG | 0.620443 | 4_4:+3486362 | Msa0664490:CDS |
| AACATTATCAACTTGTCACA+AGG | 0.621612 | 4_4:+3484375 | Msa0664490:CDS |
| GCATGATGGCACTGCCGGGA+AGG | 0.623896 | 4_4:+3483076 | Msa0664490:CDS |
| GAGTCAAATAAAGTGCATGA+TGG | 0.624057 | 4_4:+3483062 | Msa0664490:CDS |
| AGACCCAAAGTATCAGCAGA+AGG | 0.635744 | 4_4:+3485658 | Msa0664490:CDS |
| CTTCAACCAAGATTCAAAGA+CGG | 0.636333 | 4_4:+3487966 | Msa0664490:three_prime_UTR |
| GTTCTTACGAGAAATATGCA+TGG | 0.640411 | 4_4:+3483204 | Msa0664490:CDS |
| ACCCTTTGAGGATTGTGACA+AGG | 0.641871 | 4_4:+3487814 | Msa0664490:CDS |
| TAGGAAGTAATCCATCATCA+GGG | 0.641994 | 4_4:-3485819 | None:intergenic |
| GATGCAAAGTTTCTTTCTCG+CGG | 0.643973 | 4_4:+3487710 | Msa0664490:CDS |
| GTGTTAATACCTATCACCCA+TGG | 0.646060 | 4_4:-3485896 | None:intergenic |
| TAGGTGGCAGAAAGGAAGGT+CGG | 0.649075 | 4_4:+3487892 | Msa0664490:CDS |
| AACAAGACATACCAAGATTG+GGG | 0.651954 | 4_4:+3487377 | Msa0664490:CDS |
| TATATATGTGAGAAGAGTGG+AGG | 0.655638 | 4_4:+3486428 | Msa0664490:CDS |
| GATCTTTCGAAAATGGCGAG+AGG | 0.677971 | 4_4:+3481196 | None:intergenic |
| GATTGTGACAAGGAACGAAG+CGG | 0.686601 | 4_4:+3487824 | Msa0664490:CDS |
| ACACAATCCTGGATGGACCG+GGG | 0.694750 | 4_4:+3484404 | Msa0664490:CDS |
| CCACAATCCAGAGTAGTAGG+TGG | 0.698751 | 4_4:+3484243 | Msa0664490:intron |
| TCTTACGAGAAATATGCATG+GGG | 0.738365 | 4_4:+3483206 | Msa0664490:CDS |
| GTACATCATGGAACATCCTG+AGG | 0.744218 | 4_4:+3487309 | Msa0664490:CDS |
| TCAACCAAGATTCAAAGACG+GGG | 0.745743 | 4_4:+3487968 | Msa0664490:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAAAGAACATTAAAA+CGG | - | chr4_4:3482051-3482070 | None:intergenic | 10.0% |
| !!! | GAAATTATTTTTGATTTTTT+TGG | + | chr4_4:3482565-3482584 | Msa0664490:intron | 10.0% |
| !!! | ATTTTTTATTATTTTTCCTT+TGG | + | chr4_4:3483007-3483026 | Msa0664490:intron | 10.0% |
| !!! | TTTTTTATTATTTTTCCTTT+GGG | + | chr4_4:3483008-3483027 | Msa0664490:intron | 10.0% |
| !!! | GTTTATTATACTTTTTTAAT+TGG | - | chr4_4:3484159-3484178 | None:intergenic | 10.0% |
| !!! | TCTTTTTTTTTTTTTTTTGT+TGG | + | chr4_4:3484210-3484229 | Msa0664490:intron | 10.0% |
| !! | ATTAGTATAAAAGTTAAAAT+TGG | - | chr4_4:3485483-3485502 | None:intergenic | 10.0% |
| !! | GTAAAAAAAAAATGAATATA+TGG | - | chr4_4:3485699-3485718 | None:intergenic | 10.0% |
| !!! | TATATTCATTTTTTTTTTAC+GGG | + | chr4_4:3485699-3485718 | Msa0664490:intron | 10.0% |
| !!! | TTTTAAAGATTAAAAAGAAA+TGG | - | chr4_4:3486335-3486354 | None:intergenic | 10.0% |
| !!! | TAACTGTTTTTATTAAATAC+AGG | + | chr4_4:3482624-3482643 | Msa0664490:intron | 15.0% |
| !!! | TTCTTTTCATTGTTATTTAT+TGG | - | chr4_4:3482786-3482805 | None:intergenic | 15.0% |
| !! | AATAAATAACAATGAAAAGA+AGG | + | chr4_4:3482785-3482804 | Msa0664490:intron | 15.0% |
| !!! | TTTTTATTATTTTTCCTTTG+GGG | + | chr4_4:3483009-3483028 | Msa0664490:intron | 15.0% |
| !!! | GTTGTTTCTAATATTATATT+TGG | + | chr4_4:3483686-3483705 | Msa0664490:intron | 15.0% |
| !!! | GTAACTTTTATATATGAATT+AGG | - | chr4_4:3483922-3483941 | None:intergenic | 15.0% |
| !!! | TTATACTTTTTTAATTGGAA+GGG | - | chr4_4:3484154-3484173 | None:intergenic | 15.0% |
| !!! | ATTATACTTTTTTAATTGGA+AGG | - | chr4_4:3484155-3484174 | None:intergenic | 15.0% |
| !!! | ATATTCATTTTTTTTTTACG+GGG | + | chr4_4:3485700-3485719 | Msa0664490:intron | 15.0% |
| !! | TTTATTCTCTGATATACTAT+CGG | + | chr4_4:3481516-3481535 | Msa0664490:intron | 20.0% |
| !! | TAGTAATATCAAATCAGTAT+AGG | - | chr4_4:3481655-3481674 | None:intergenic | 20.0% |
| !!! | ATACTGATTTGATATTACTA+AGG | + | chr4_4:3481655-3481674 | Msa0664490:intron | 20.0% |
| !! | CTTGTACAATAGATTAAAAA+TGG | - | chr4_4:3482363-3482382 | None:intergenic | 20.0% |
| !!! | AAGTGTAACTTTATTTTTAG+AGG | + | chr4_4:3482536-3482555 | Msa0664490:intron | 20.0% |
| !!! | AGTGTAACTTTATTTTTAGA+GGG | + | chr4_4:3482537-3482556 | Msa0664490:intron | 20.0% |
| !! | TAATAAAAACAGTTATCTAC+TGG | - | chr4_4:3482619-3482638 | None:intergenic | 20.0% |
| !!! | AATGATATGGAATGTTTTTA+AGG | - | chr4_4:3482755-3482774 | None:intergenic | 20.0% |
| !! | ATTGGAAAAATGAAATGATA+TGG | - | chr4_4:3482768-3482787 | None:intergenic | 20.0% |
| !!! | TTTTATTATTTTTCCTTTGG+GGG | + | chr4_4:3483010-3483029 | Msa0664490:intron | 20.0% |
| !!! | CAATAAAACAAAAAAGTACA+AGG | - | chr4_4:3483278-3483297 | None:intergenic | 20.0% |
| !! | TCTAATATTATATTTGGCAA+AGG | + | chr4_4:3483692-3483711 | Msa0664490:intron | 20.0% |
| !! | TATAATAAACTTAACTTACG+TGG | + | chr4_4:3484169-3484188 | Msa0664490:intron | 20.0% |
| !!! | AGTACTATATTTTGTTCAAA+AGG | - | chr4_4:3484648-3484667 | None:intergenic | 20.0% |
| !!! | TTGAATGTGTTTTTAATAGA+AGG | + | chr4_4:3484705-3484724 | Msa0664490:intron | 20.0% |
| !!! | TTTTTGTTTTTATTGACTAC+TGG | - | chr4_4:3484751-3484770 | None:intergenic | 20.0% |
| !! | AAAAGATAATCATGAAAACA+TGG | - | chr4_4:3484848-3484867 | None:intergenic | 20.0% |
| !!! | TTTTCAAATAAACGTAGAAT+AGG | + | chr4_4:3486261-3486280 | Msa0664490:intron | 20.0% |
| !! | TCAATGGTAAATATTAAATG+CGG | - | chr4_4:3486500-3486519 | None:intergenic | 20.0% |
| !! | AATATTTACCATTGATGTAT+TGG | + | chr4_4:3486505-3486524 | Msa0664490:intron | 20.0% |
| !!! | TTATCTTTTGCTATAGAAAT+AGG | - | chr4_4:3486835-3486854 | None:intergenic | 20.0% |
| !! | AAATTGTTTCCATTTATAAG+CGG | + | chr4_4:3486864-3486883 | Msa0664490:intron | 20.0% |
| !!! | TTACTTTTTCTTTTTTTGAC+AGG | + | chr4_4:3487194-3487213 | Msa0664490:intron | 20.0% |
| !!! | AAATTTACTTCTGCATTTTA+AGG | + | chr4_4:3487274-3487293 | Msa0664490:intron | 20.0% |
| !! | CATTATTAAATGTGAAATTG+AGG | - | chr4_4:3487479-3487498 | None:intergenic | 20.0% |
| !! | GTAATATAGGAAATAGAAAT+AGG | + | chr4_4:3488090-3488109 | Msa0664490:three_prime_UTR | 20.0% |
| !! | GTTCCACAAAATAATATTAA+GGG | - | chr4_4:3488146-3488165 | None:intergenic | 20.0% |
| !! | TTTCGGTTTCTTTTATTGTT+TGG | + | chr4_4:3481320-3481339 | Msa0664490:intron | 25.0% |
| !! | TTCGGTTTCTTTTATTGTTT+GGG | + | chr4_4:3481321-3481340 | Msa0664490:intron | 25.0% |
| !!! | TTTTGTTTCAATTCTGTGTT+TGG | + | chr4_4:3481408-3481427 | Msa0664490:intron | 25.0% |
| ! | ATCATATAGGATTTGTAAGA+AGG | + | chr4_4:3481580-3481599 | Msa0664490:intron | 25.0% |
| ! | TTTGATATTACTAAGGAGTA+AGG | + | chr4_4:3481662-3481681 | Msa0664490:intron | 25.0% |
| !! | TAGGTTTATGAATTTTCACT+TGG | + | chr4_4:3481730-3481749 | Msa0664490:intron | 25.0% |
| !! | AGGTTTATGAATTTTCACTT+GGG | + | chr4_4:3481731-3481750 | Msa0664490:intron | 25.0% |
| ! | ATTGATATTGTTCTGTGATA+AGG | + | chr4_4:3481819-3481838 | Msa0664490:intron | 25.0% |
| ! | TTACATTCAATTATTACCGA+TGG | - | chr4_4:3482139-3482158 | None:intergenic | 25.0% |
| !! | TAATATAGCAGTGATACTTT+TGG | + | chr4_4:3482265-3482284 | Msa0664490:intron | 25.0% |
| ! | GTATTCTATAACTACCAATT+TGG | - | chr4_4:3482432-3482451 | None:intergenic | 25.0% |
| ! | GTAGTTATAGAATACTACAA+CGG | + | chr4_4:3482437-3482456 | Msa0664490:intron | 25.0% |
| ! | AAACTTTGTAGCATATATTG+TGG | + | chr4_4:3482480-3482499 | Msa0664490:intron | 25.0% |
| ! | AACTTTGTAGCATATATTGT+GGG | + | chr4_4:3482481-3482500 | Msa0664490:intron | 25.0% |
| ! | TTTATTGCATGATGATCTAA+TGG | + | chr4_4:3483291-3483310 | Msa0664490:intron | 25.0% |
| ! | GAATGGTACATGATATAAAT+TGG | + | chr4_4:3483374-3483393 | Msa0664490:intron | 25.0% |
| ! | TCTTGATACACTATACATTA+TGG | + | chr4_4:3483541-3483560 | Msa0664490:CDS | 25.0% |
| ! | CTTGATACACTATACATTAT+GGG | + | chr4_4:3483542-3483561 | Msa0664490:CDS | 25.0% |
| ! | ATGATTCTAAATGAGTATAG+AGG | - | chr4_4:3483657-3483676 | None:intergenic | 25.0% |
| !! | ATCTAGAACAGCAATAAAAT+TGG | - | chr4_4:3483775-3483794 | None:intergenic | 25.0% |
| !!! | GTTATAGTGTTTAACTTGTA+TGG | + | chr4_4:3483807-3483826 | Msa0664490:intron | 25.0% |
| !!! | ACAAGTTTTGTTTTTTGACA+AGG | - | chr4_4:3483837-3483856 | None:intergenic | 25.0% |
| ! | GTCAAAAAACAAAACTTGTA+TGG | + | chr4_4:3483838-3483857 | Msa0664490:intron | 25.0% |
| ! | AAATGTAATAAAGCCTAACT+AGG | - | chr4_4:3484002-3484021 | None:intergenic | 25.0% |
| !! | AACCATAAGGTTACTTTATA+AGG | + | chr4_4:3484108-3484127 | Msa0664490:intron | 25.0% |
| ! | AACCTTATAAAGTAACCTTA+TGG | - | chr4_4:3484113-3484132 | None:intergenic | 25.0% |
| !!! | GACAAGTTGATAATGTTATA+AGG | - | chr4_4:3484372-3484391 | None:intergenic | 25.0% |
| ! | TTGTAGTTAACTTAACATTG+AGG | - | chr4_4:3484509-3484528 | None:intergenic | 25.0% |
| !! | TTTCATGATTATCTTTTGCT+TGG | + | chr4_4:3484851-3484870 | Msa0664490:intron | 25.0% |
| ! | CATTTCCATATTTGTATTAG+AGG | + | chr4_4:3484987-3485006 | Msa0664490:intron | 25.0% |
| !!! | TTTTTGCCTTCATTTTTCAA+GGG | + | chr4_4:3485569-3485588 | Msa0664490:intron | 25.0% |
| ! | CATCTTATTCTGTGTTAATT+TGG | + | chr4_4:3486004-3486023 | Msa0664490:intron | 25.0% |
| ! | GTATTCATAAAAACTGCAAT+TGG | - | chr4_4:3486048-3486067 | None:intergenic | 25.0% |
| ! | ATGAATACTTGCTTAAAGTT+TGG | + | chr4_4:3486060-3486079 | Msa0664490:CDS | 25.0% |
| ! | TGAATACTTGCTTAAAGTTT+GGG | + | chr4_4:3486061-3486080 | Msa0664490:CDS | 25.0% |
| ! | AGAATAAAACATGATGAAGT+AGG | - | chr4_4:3486141-3486160 | None:intergenic | 25.0% |
| ! | ATAATTCTTTCATTGATCCA+AGG | - | chr4_4:3486193-3486212 | None:intergenic | 25.0% |
| !!! | ATCTTTAAAACAGAGATATG+TGG | + | chr4_4:3486345-3486364 | Msa0664490:intron | 25.0% |
| !!! | TCTTTAAAACAGAGATATGT+GGG | + | chr4_4:3486346-3486365 | Msa0664490:intron | 25.0% |
| ! | CATATATAAGTAAAGGAAGA+TGG | - | chr4_4:3486416-3486435 | None:intergenic | 25.0% |
| ! | CTTCTCACATATATAAGTAA+AGG | - | chr4_4:3486423-3486442 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr4_4:3486756-3486775 | None:intergenic | 25.0% |
| ! | TTATGAAAACCGCTTATAAA+TGG | - | chr4_4:3486876-3486895 | None:intergenic | 25.0% |
| ! | AAATACATGTAGAGTAAGTT+TGG | - | chr4_4:3487026-3487045 | None:intergenic | 25.0% |
| !! | AGAACTATTTCTTTCATTCT+GGG | + | chr4_4:3487163-3487182 | Msa0664490:intron | 25.0% |
| !!! | TTTTTCTTTTTTTGACAGGA+AGG | + | chr4_4:3487198-3487217 | Msa0664490:intron | 25.0% |
| ! | GATGCACATAGTATTAATTT+GGG | - | chr4_4:3487619-3487638 | None:intergenic | 25.0% |
| ! | TGATGCACATAGTATTAATT+TGG | - | chr4_4:3487620-3487639 | None:intergenic | 25.0% |
| !! | CAAAAATCTTTTCCTAGAAT+AGG | + | chr4_4:3487873-3487892 | Msa0664490:CDS | 25.0% |
| ! | CTACAAATGATGAGTAATAT+AGG | + | chr4_4:3488077-3488096 | Msa0664490:three_prime_UTR | 25.0% |
| ! | CTTCATATCTTGACTAAAAT+AGG | + | chr4_4:3488114-3488133 | Msa0664490:three_prime_UTR | 25.0% |
| ! | GGTTCCACAAAATAATATTA+AGG | - | chr4_4:3488147-3488166 | None:intergenic | 25.0% |
| ! | TATGAAATGCACTCAAAATT+TGG | - | chr4_4:3488168-3488187 | None:intergenic | 25.0% |
| ! | ATACATGATTTATGTAACTG+AGG | + | chr4_4:3488185-3488204 | Msa0664490:three_prime_UTR | 25.0% |
| ! | TATAGAATGCACAGATATAT+AGG | - | chr4_4:3488211-3488230 | None:intergenic | 25.0% |
| !! | GCTTTTCATCGTTTTTGTTT+CGG | + | chr4_4:3481303-3481322 | Msa0664490:CDS | 30.0% |
| CAAATGAAGAAATACATACC+TGG | - | chr4_4:3481372-3481391 | None:intergenic | 30.0% | |
| CTAGTGTTCATAGATCATAT+AGG | + | chr4_4:3481567-3481586 | Msa0664490:intron | 30.0% | |
| ATAGGATTTGTAAGAAGGAA+AGG | + | chr4_4:3481585-3481604 | Msa0664490:intron | 30.0% | |
| AAACTAAGAGCTAATCCAAA+TGG | - | chr4_4:3481689-3481708 | None:intergenic | 30.0% | |
| !! | TTGGATTAGCTCTTAGTTTA+TGG | + | chr4_4:3481690-3481709 | Msa0664490:intron | 30.0% |
| !! | TGGATTAGCTCTTAGTTTAT+GGG | + | chr4_4:3481691-3481710 | Msa0664490:intron | 30.0% |
| ! | GGTTTATGAATTTTCACTTG+GGG | + | chr4_4:3481732-3481751 | Msa0664490:intron | 30.0% |
| TTGTTAAATAGAGGCTATGA+TGG | + | chr4_4:3481761-3481780 | Msa0664490:intron | 30.0% | |
| TACAAGATAATGAGTAGTTG+TGG | + | chr4_4:3482377-3482396 | Msa0664490:intron | 30.0% | |
| TAACTACCAATTTGGTTGTT+TGG | - | chr4_4:3482424-3482443 | None:intergenic | 30.0% | |
| !! | TTTTTGGCACTTGAATAACT+TGG | + | chr4_4:3482581-3482600 | Msa0664490:intron | 30.0% |
| !! | AATAACCGACTTGCATAATT+TGG | + | chr4_4:3482672-3482691 | Msa0664490:CDS | 30.0% |
| TCTTACCAAATTATGCAAGT+CGG | - | chr4_4:3482680-3482699 | None:intergenic | 30.0% | |
| AATGAAAAGAAGGAATGAGA+TGG | + | chr4_4:3482795-3482814 | Msa0664490:intron | 30.0% | |
| ! | TTTTCAATCAGTACGAAAGT+AGG | - | chr4_4:3482852-3482871 | None:intergenic | 30.0% |
| ! | TAATTTTGTGCCAGATTGAT+TGG | - | chr4_4:3482898-3482917 | None:intergenic | 30.0% |
| TTCTTACGAGAAATATGCAT+GGG | + | chr4_4:3483205-3483224 | Msa0664490:CDS | 30.0% | |
| AGCAAAAAACAATAACAACC+AGG | - | chr4_4:3483630-3483649 | None:intergenic | 30.0% | |
| ATTCTAAATGAGTATAGAGG+TGG | - | chr4_4:3483654-3483673 | None:intergenic | 30.0% | |
| ! | TGTTCTAGATGAACATTTCA+TGG | + | chr4_4:3483785-3483804 | Msa0664490:intron | 30.0% |
| GCAGCAATAAAGAGTTAAAT+AGG | - | chr4_4:3483892-3483911 | None:intergenic | 30.0% | |
| !! | AAACTCTCTGGATTTTAACA+AGG | + | chr4_4:3484060-3484079 | Msa0664490:CDS | 30.0% |
| AAAGATCGTATGTACTAAGA+AGG | - | chr4_4:3484269-3484288 | None:intergenic | 30.0% | |
| TAATCTATCTGCAATATCTC+TGG | - | chr4_4:3484319-3484338 | None:intergenic | 30.0% | |
| ATGTTATAAGGAATTCCTGT+AGG | - | chr4_4:3484360-3484379 | None:intergenic | 30.0% | |
| AACATTATCAACTTGTCACA+AGG | + | chr4_4:3484375-3484394 | Msa0664490:CDS | 30.0% | |
| ATATTGCTTTCATGTTCCAT+AGG | + | chr4_4:3484483-3484502 | Msa0664490:intron | 30.0% | |
| GACACAAAAGTTGTAAACAA+TGG | - | chr4_4:3484533-3484552 | None:intergenic | 30.0% | |
| ! | TACAACTTTTGTGTCCATAA+AGG | + | chr4_4:3484538-3484557 | Msa0664490:intron | 30.0% |
| !! | AAGCTTTAAGGTTAAGATCA+AGG | - | chr4_4:3484585-3484604 | None:intergenic | 30.0% |
| TTGATCTTAACCTTAAAGCT+TGG | + | chr4_4:3484584-3484603 | Msa0664490:intron | 30.0% | |
| !!! | TTGTTTTTATTGACTACTGG+AGG | - | chr4_4:3484748-3484767 | None:intergenic | 30.0% |
| TAGACATGAAAAAACAATGC+AGG | + | chr4_4:3484894-3484913 | Msa0664490:intron | 30.0% | |
| AGACATGAAAAAACAATGCA+GGG | + | chr4_4:3484895-3484914 | Msa0664490:intron | 30.0% | |
| TGATCAATACTTAGCAAGAA+AGG | - | chr4_4:3484922-3484941 | None:intergenic | 30.0% | |
| CTTGAGAAGAGTTTATAAAG+AGG | + | chr4_4:3485155-3485174 | Msa0664490:intron | 30.0% | |
| CTTGAGAAGAGTTTATAAAG+AGG | + | chr4_4:3485155-3485174 | Msa0664490:intron | 30.0% | |
| TTAATCATGTCACGAAAAAC+GGG | - | chr4_4:3485460-3485479 | None:intergenic | 30.0% | |
| GTTAATCATGTCACGAAAAA+CGG | - | chr4_4:3485461-3485480 | None:intergenic | 30.0% | |
| ! | TAATTTTGTATTCCTGACTC+TGG | + | chr4_4:3485499-3485518 | Msa0664490:intron | 30.0% |
| CTTGAAAAATGAAGGCAAAA+AGG | - | chr4_4:3485570-3485589 | None:intergenic | 30.0% | |
| !! | CTTTTTGCCTTCATTTTTCA+AGG | + | chr4_4:3485568-3485587 | Msa0664490:intron | 30.0% |
| !!! | TCATTTTTTTTTTACGGGGA+AGG | + | chr4_4:3485704-3485723 | Msa0664490:intron | 30.0% |
| !!! | CATTTTTTTTTTACGGGGAA+GGG | + | chr4_4:3485705-3485724 | Msa0664490:intron | 30.0% |
| !!! | ATTTTTTTTTTACGGGGAAG+GGG | + | chr4_4:3485706-3485725 | Msa0664490:intron | 30.0% |
| AATAAAACATTCCCTGATGA+TGG | + | chr4_4:3485808-3485827 | Msa0664490:CDS | 30.0% | |
| CTATGAGGATTGATATAGAT+AGG | - | chr4_4:3485841-3485860 | None:intergenic | 30.0% | |
| ATCTATATCAATCCTCATAG+TGG | + | chr4_4:3485841-3485860 | Msa0664490:CDS | 30.0% | |
| ! | GCTTTTATCGTGTAAAAAGA+TGG | - | chr4_4:3485932-3485951 | None:intergenic | 30.0% |
| TTCTTTAGTTAGTACTGTCT+GGG | + | chr4_4:3485964-3485983 | Msa0664490:intron | 30.0% | |
| CTCTAGCTGTAAAACTTTAT+AGG | + | chr4_4:3486099-3486118 | Msa0664490:CDS | 30.0% | |
| ATAAAACATGATGAAGTAGG+TGG | - | chr4_4:3486138-3486157 | None:intergenic | 30.0% | |
| TCATTTGAATGATAGTTCCT+TGG | + | chr4_4:3486173-3486192 | Msa0664490:intron | 30.0% | |
| AAGGTCTGTTAAGTTTGATT+CGG | + | chr4_4:3486381-3486400 | Msa0664490:CDS | 30.0% | |
| ACTTATATATGTGAGAAGAG+TGG | + | chr4_4:3486425-3486444 | Msa0664490:CDS | 30.0% | |
| ATGATTCTGCATTGTAATAC+TGG | + | chr4_4:3486469-3486488 | Msa0664490:intron | 30.0% | |
| ACTTTCATCCAATACATCAA+TGG | - | chr4_4:3486516-3486535 | None:intergenic | 30.0% | |
| ! | CATGGCTTTTGTATATTGAT+AGG | - | chr4_4:3486738-3486757 | None:intergenic | 30.0% |
| CAATATACAAAAGCCATGTT+TGG | + | chr4_4:3486740-3486759 | Msa0664490:intron | 30.0% | |
| !! | CTAACACAAAAGCATTTACA+TGG | - | chr4_4:3486805-3486824 | None:intergenic | 30.0% |
| ACTTAATTGAACTAATCGAC+TGG | - | chr4_4:3486999-3487018 | None:intergenic | 30.0% | |
| GTATGACAACTTCATAAAGA+CGG | - | chr4_4:3487068-3487087 | None:intergenic | 30.0% | |
| !! | CTAATTTTGTTGGAGTTGAT+TGG | - | chr4_4:3487137-3487156 | None:intergenic | 30.0% |
| ! | GAGAACTATTTCTTTCATTC+TGG | + | chr4_4:3487162-3487181 | Msa0664490:intron | 30.0% |
| ! | GAACTATTTCTTTCATTCTG+GGG | + | chr4_4:3487164-3487183 | Msa0664490:intron | 30.0% |
| !!! | AGACTTTTTTTTTGCCAAAG+TGG | - | chr4_4:3487555-3487574 | None:intergenic | 30.0% |
| TTGAATACCCATTCATCTAA+TGG | - | chr4_4:3487783-3487802 | None:intergenic | 30.0% | |
| ! | TTCTCATTTGAGTTCTTAAC+AGG | - | chr4_4:3487852-3487871 | None:intergenic | 30.0% |
| ! | AAATCTTTTCCTAGAATAGG+TGG | + | chr4_4:3487876-3487895 | Msa0664490:CDS | 30.0% |
| ATCTTGACTAAAATAGGTTG+TGG | + | chr4_4:3488120-3488139 | Msa0664490:three_prime_UTR | 30.0% | |
| !! | TGGCCCTTAATATTATTTTG+TGG | + | chr4_4:3488140-3488159 | Msa0664490:three_prime_UTR | 30.0% |
| CTATAGAAGACAGATACTAT+AGG | + | chr4_4:3488226-3488245 | Msa0664490:three_prime_UTR | 30.0% | |
| AACTTTAGTCAGAGAATACC+AGG | + | chr4_4:3481351-3481370 | Msa0664490:intron | 35.0% | |
| TTATCAACACCTCTGATCAA+AGG | + | chr4_4:3481445-3481464 | Msa0664490:intron | 35.0% | |
| GGGTGCTTCTTAGATAAAAT+AGG | + | chr4_4:3481711-3481730 | Msa0664490:intron | 35.0% | |
| ! | GGGATAGTGTTGTTAAATAG+AGG | + | chr4_4:3481752-3481771 | Msa0664490:intron | 35.0% |
| AGTTATTGCCTATGAAGCAT+TGG | + | chr4_4:3482070-3482089 | Msa0664490:intron | 35.0% | |
| TGATATTGACATGTGACCAT+CGG | + | chr4_4:3482120-3482139 | Msa0664490:intron | 35.0% | |
| !! | TCTCTTTCAGAAGTACTTCT+TGG | + | chr4_4:3482236-3482255 | Msa0664490:intron | 35.0% |
| !! | CTCTTTCAGAAGTACTTCTT+GGG | + | chr4_4:3482237-3482256 | Msa0664490:intron | 35.0% |
| ! | TATAGCAGTGATACTTTTGG+AGG | + | chr4_4:3482268-3482287 | Msa0664490:intron | 35.0% |
| CGTAAATGCACAATTGAGTA+TGG | + | chr4_4:3482296-3482315 | Msa0664490:intron | 35.0% | |
| GTTATAGAATACTACAACGG+CGG | + | chr4_4:3482440-3482459 | Msa0664490:intron | 35.0% | |
| TTATAGAATACTACAACGGC+GGG | + | chr4_4:3482441-3482460 | Msa0664490:intron | 35.0% | |
| !! | AGGAAGTGTTCACTTGATAA+TGG | - | chr4_4:3482934-3482953 | None:intergenic | 35.0% |
| ATTCAAATAAGAACTCTGCC+CGG | - | chr4_4:3482970-3482989 | None:intergenic | 35.0% | |
| GCAATTGGAATTGTTTCAGT+TGG | + | chr4_4:3483037-3483056 | Msa0664490:intron | 35.0% | |
| GAGTCAAATAAAGTGCATGA+TGG | + | chr4_4:3483062-3483081 | Msa0664490:CDS | 35.0% | |
| ATTATCCAAGACCTCTTTAG+TGG | - | chr4_4:3483129-3483148 | None:intergenic | 35.0% | |
| !!! | CTTTTACTTTTTCCCTTCTC+TGG | - | chr4_4:3483163-3483182 | None:intergenic | 35.0% |
| GTTCTTACGAGAAATATGCA+TGG | + | chr4_4:3483204-3483223 | Msa0664490:CDS | 35.0% | |
| TCTTACGAGAAATATGCATG+GGG | + | chr4_4:3483206-3483225 | Msa0664490:CDS | 35.0% | |
| AATGGAGTGATGTGGTTATT+TGG | + | chr4_4:3483309-3483328 | Msa0664490:intron | 35.0% | |
| ACTGATTGTATGCTCTTGAA+TGG | + | chr4_4:3483357-3483376 | Msa0664490:intron | 35.0% | |
| ! | AAAAGTGGTGTCAATAGCTT+TGG | + | chr4_4:3483491-3483510 | Msa0664490:CDS | 35.0% |
| AAAAGGTTACACTTACTCTC+GGG | - | chr4_4:3483591-3483610 | None:intergenic | 35.0% | |
| GAAAAGGTTACACTTACTCT+CGG | - | chr4_4:3483592-3483611 | None:intergenic | 35.0% | |
| CAATTGTGATACTCCTAGTT+AGG | + | chr4_4:3483986-3484005 | Msa0664490:intron | 35.0% | |
| TAATACATTATCCTGACAGC+TGG | + | chr4_4:3484032-3484051 | Msa0664490:intron | 35.0% | |
| AATACATTATCCTGACAGCT+GGG | + | chr4_4:3484033-3484052 | Msa0664490:intron | 35.0% | |
| CTTAGTACATACGATCTTTC+AGG | + | chr4_4:3484270-3484289 | Msa0664490:CDS | 35.0% | |
| TAACTTAACATTGAGGCCTA+TGG | - | chr4_4:3484502-3484521 | None:intergenic | 35.0% | |
| ACCTTAAAGCTTGGATATTG+TGG | + | chr4_4:3484593-3484612 | Msa0664490:intron | 35.0% | |
| CTGCTTTCTAATGTTATTCG+TGG | + | chr4_4:3484951-3484970 | Msa0664490:intron | 35.0% | |
| CCATGCCTCTAATACAAATA+TGG | - | chr4_4:3484995-3485014 | None:intergenic | 35.0% | |
| CCATATTTGTATTAGAGGCA+TGG | + | chr4_4:3484992-3485011 | Msa0664490:intron | 35.0% | |
| !! | GGCTTTCTATGTTAGTTCTA+CGG | + | chr4_4:3485069-3485088 | Msa0664490:intron | 35.0% |
| !! | GCTTTCTATGTTAGTTCTAC+GGG | + | chr4_4:3485070-3485089 | Msa0664490:intron | 35.0% |
| GAATCCTATCTATCTGATGT+GGG | - | chr4_4:3485136-3485155 | None:intergenic | 35.0% | |
| AGAATCCTATCTATCTGATG+TGG | - | chr4_4:3485137-3485156 | None:intergenic | 35.0% | |
| GAGAAGAGTTTATAAAGAGG+AGG | + | chr4_4:3485158-3485177 | Msa0664490:intron | 35.0% | |
| TGATACCATGTCACGAAAAT+CGG | - | chr4_4:3485228-3485247 | None:intergenic | 35.0% | |
| GAGAAGAGTTTATAAAGAGG+AGG | + | chr4_4:3485158-3485177 | Msa0664490:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+AGG | - | chr4_4:3485202-3485221 | None:intergenic | 35.0% | |
| ! | CTGTTTTGTAAGGATGAGTT+AGG | + | chr4_4:3485433-3485452 | Msa0664490:intron | 35.0% |
| TAATCATGTCACGAAAAACG+GGG | - | chr4_4:3485459-3485478 | None:intergenic | 35.0% | |
| GGAATCAGAAACTCATAAAG+CGG | - | chr4_4:3485549-3485568 | None:intergenic | 35.0% | |
| !!! | TTTCAAGGGTGAGAGTATTT+TGG | + | chr4_4:3485583-3485602 | Msa0664490:intron | 35.0% |
| AGTTCATTGCTCTATCTCAA+AGG | + | chr4_4:3485630-3485649 | Msa0664490:CDS | 35.0% | |
| AAACCTTCTGCTGATACTTT+GGG | - | chr4_4:3485664-3485683 | None:intergenic | 35.0% | |
| AAAACCTTCTGCTGATACTT+TGG | - | chr4_4:3485665-3485684 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTACGGGGAAGG+GGG | + | chr4_4:3485707-3485726 | Msa0664490:intron | 35.0% |
| ATTCTCAACCTGAAAAAGCA+GGG | - | chr4_4:3485773-3485792 | None:intergenic | 35.0% | |
| TAGGAAGTAATCCATCATCA+GGG | - | chr4_4:3485822-3485841 | None:intergenic | 35.0% | |
| ATAGGAAGTAATCCATCATC+AGG | - | chr4_4:3485823-3485842 | None:intergenic | 35.0% | |
| CTTCTTTAGTTAGTACTGTC+TGG | + | chr4_4:3485963-3485982 | Msa0664490:intron | 35.0% | |
| TTGCTTAAAGTTTGGGTACA+AGG | + | chr4_4:3486068-3486087 | Msa0664490:CDS | 35.0% | |
| TGCTTAAAGTTTGGGTACAA+GGG | + | chr4_4:3486069-3486088 | Msa0664490:CDS | 35.0% | |
| ATGTGGGAGAAATCAATGAA+AGG | + | chr4_4:3486362-3486381 | Msa0664490:CDS | 35.0% | |
| TATATATGTGAGAAGAGTGG+AGG | + | chr4_4:3486428-3486447 | Msa0664490:CDS | 35.0% | |
| ATAAACTTCTGCGAATCATC+AGG | - | chr4_4:3486630-3486649 | None:intergenic | 35.0% | |
| ! | GCACATTAAGGCTTTTCAAA+TGG | - | chr4_4:3486683-3486702 | None:intergenic | 35.0% |
| TCAACAGAACAAGCACATTA+AGG | - | chr4_4:3486695-3486714 | None:intergenic | 35.0% | |
| ! | GCGGTTTTCATAAACTATCA+CGG | + | chr4_4:3486883-3486902 | Msa0664490:intron | 35.0% |
| TAAACACTTGTGAGATGGTT+TGG | - | chr4_4:3486974-3486993 | None:intergenic | 35.0% | |
| TCAACTCCAACAAAATTAGC+TGG | + | chr4_4:3487138-3487157 | Msa0664490:intron | 35.0% | |
| ! | TTCTCTCCAGCTAATTTTGT+TGG | - | chr4_4:3487147-3487166 | None:intergenic | 35.0% |
| !!! | TTCTTTTTTTGACAGGAAGG+AGG | + | chr4_4:3487201-3487220 | Msa0664490:intron | 35.0% |
| !! | CATTTTAAGGACATGAGTGT+GGG | + | chr4_4:3487287-3487306 | Msa0664490:intron | 35.0% |
| CAACAAGACATACCAAGATT+GGG | + | chr4_4:3487376-3487395 | Msa0664490:CDS | 35.0% | |
| AACAAGACATACCAAGATTG+GGG | + | chr4_4:3487377-3487396 | Msa0664490:CDS | 35.0% | |
| ATATATTCCAACCCCAATCT+TGG | - | chr4_4:3487391-3487410 | None:intergenic | 35.0% | |
| TACTCTCTTTGTCCCATATT+GGG | + | chr4_4:3487527-3487546 | Msa0664490:intron | 35.0% | |
| TTTAACACCAGTGTTAACCT+GGG | - | chr4_4:3487682-3487701 | None:intergenic | 35.0% | |
| GGTCATTCCATTAGATGAAT+GGG | + | chr4_4:3487773-3487792 | Msa0664490:CDS | 35.0% | |
| TCTTTGAATCTTGGTTGAAG+TGG | - | chr4_4:3487966-3487985 | None:intergenic | 35.0% | |
| CTTCAACCAAGATTCAAAGA+CGG | + | chr4_4:3487966-3487985 | Msa0664490:three_prime_UTR | 35.0% | |
| TTCAACCAAGATTCAAAGAC+GGG | + | chr4_4:3487967-3487986 | Msa0664490:three_prime_UTR | 35.0% | |
| TAAGATGTCAGAACCTTCAT+TGG | + | chr4_4:3488014-3488033 | Msa0664490:three_prime_UTR | 35.0% | |
| AAGATGTCAGAACCTTCATT+GGG | + | chr4_4:3488015-3488034 | Msa0664490:three_prime_UTR | 35.0% | |
| TGAGTAGCAGTAGCAGTAAA+TGG | + | chr4_4:3481230-3481249 | Msa0664490:CDS | 40.0% | |
| ! | AAAAGCATAGCAAGACGCTT+AGG | - | chr4_4:3481289-3481308 | None:intergenic | 40.0% |
| TCTCTGATATACTATCGGTG+TGG | + | chr4_4:3481521-3481540 | Msa0664490:intron | 40.0% | |
| ACTAAGGAGTAAGGACCATT+TGG | + | chr4_4:3481671-3481690 | Msa0664490:intron | 40.0% | |
| !! | TGTGTAGCTTTGTTGTGTAG+CGG | + | chr4_4:3481873-3481892 | Msa0664490:intron | 40.0% |
| CTATCGCAGATCACAGAAAA+TGG | - | chr4_4:3481914-3481933 | None:intergenic | 40.0% | |
| ACCGATGAATGAGAGAACTT+CGG | + | chr4_4:3481983-3482002 | Msa0664490:intron | 40.0% | |
| TCCGAAGTTCTCTCATTCAT+CGG | - | chr4_4:3481987-3482006 | None:intergenic | 40.0% | |
| ATTGGCACAGACAAGTACAT+CGG | + | chr4_4:3482088-3482107 | Msa0664490:intron | 40.0% | |
| CTTCATATTGCAGGTACATC+TGG | - | chr4_4:3482180-3482199 | None:intergenic | 40.0% | |
| !! | TTCAGAAGTACTTCTTGGGA+AGG | + | chr4_4:3482241-3482260 | Msa0664490:intron | 40.0% |
| ATGCACAATTGAGTATGGTG+TGG | + | chr4_4:3482301-3482320 | Msa0664490:intron | 40.0% | |
| TGTGGCTGAAATCAGACTAT+AGG | + | chr4_4:3482319-3482338 | Msa0664490:intron | 40.0% | |
| TCAGACTATAGGTCGAGAAT+AGG | + | chr4_4:3482330-3482349 | Msa0664490:intron | 40.0% | |
| CAGACTATAGGTCGAGAATA+GGG | + | chr4_4:3482331-3482350 | Msa0664490:intron | 40.0% | |
| TTCCTGCCAAACAACCAAAT+TGG | + | chr4_4:3482415-3482434 | Msa0664490:intron | 40.0% | |
| TACCAATTTGGTTGTTTGGC+AGG | - | chr4_4:3482420-3482439 | None:intergenic | 40.0% | |
| AATCAGTACGAAAGTAGGAG+TGG | - | chr4_4:3482847-3482866 | None:intergenic | 40.0% | |
| ATCAAGTGAACACTTCCTTG+TGG | + | chr4_4:3482936-3482955 | Msa0664490:intron | 40.0% | |
| ACTCGAAGGGAAAAACTAAC+AGG | + | chr4_4:3483102-3483121 | Msa0664490:CDS | 40.0% | |
| AACTAACAGGTCCACTAAAG+AGG | + | chr4_4:3483115-3483134 | Msa0664490:CDS | 40.0% | |
| ATCCCATTGATATCCAGAGA+AGG | + | chr4_4:3483147-3483166 | Msa0664490:CDS | 40.0% | |
| TCCCATTGATATCCAGAGAA+GGG | + | chr4_4:3483148-3483167 | Msa0664490:CDS | 40.0% | |
| TCCCTTCTCTGGATATCAAT+GGG | - | chr4_4:3483152-3483171 | None:intergenic | 40.0% | |
| TTCCCTTCTCTGGATATCAA+TGG | - | chr4_4:3483153-3483172 | None:intergenic | 40.0% | |
| AAGAAGCAATGCTTCATGCT+TGG | + | chr4_4:3483180-3483199 | Msa0664490:CDS | 40.0% | |
| ACCATACCTGTAGTTCATCT+TGG | - | chr4_4:3483232-3483251 | None:intergenic | 40.0% | |
| GATGATCTAATGGAGTGATG+TGG | + | chr4_4:3483301-3483320 | Msa0664490:intron | 40.0% | |
| !!! | TTGACACCACTTTTTGACTG+AGG | - | chr4_4:3483485-3483504 | None:intergenic | 40.0% |
| !! | GTGTTTTCGAGACAACCATA+AGG | + | chr4_4:3484095-3484114 | Msa0664490:CDS | 40.0% |
| !! | CAATATCTCTGGCTTTGTCA+AGG | - | chr4_4:3484308-3484327 | None:intergenic | 40.0% |
| ! | CTTTTGTGTCCATAAAGGTG+TGG | + | chr4_4:3484543-3484562 | Msa0664490:intron | 40.0% |
| !! | CATAAAGGTGTGGCTTTTGT+GGG | + | chr4_4:3484553-3484572 | Msa0664490:intron | 40.0% |
| GCCACAATATCCAAGCTTTA+AGG | - | chr4_4:3484597-3484616 | None:intergenic | 40.0% | |
| ! | TAGTACTAGCTTGATGCCAT+TGG | + | chr4_4:3484661-3484680 | Msa0664490:intron | 40.0% |
| CCACAAAATAGCAGATCCAA+TGG | - | chr4_4:3484680-3484699 | None:intergenic | 40.0% | |
| !!! | CCATTGGATCTGCTATTTTG+TGG | + | chr4_4:3484677-3484696 | Msa0664490:intron | 40.0% |
| ! | TGTATTAGAGGCATGGATCT+TGG | + | chr4_4:3484999-3485018 | Msa0664490:intron | 40.0% |
| TCATTCACATGCCTGACTTT+AGG | + | chr4_4:3485041-3485060 | Msa0664490:intron | 40.0% | |
| AAAGCCTTTGACCTAAAGTC+AGG | - | chr4_4:3485055-3485074 | None:intergenic | 40.0% | |
| !! | ACGGGAGTATGATTTGTTAG+CGG | + | chr4_4:3485088-3485107 | Msa0664490:intron | 40.0% |
| TAGTCCCACATCAGATAGAT+AGG | + | chr4_4:3485129-3485148 | Msa0664490:intron | 40.0% | |
| ATACCATGTCACGAAAATCG+GGG | - | chr4_4:3485226-3485245 | None:intergenic | 40.0% | |
| GATACCATGTCACGAAAATC+GGG | - | chr4_4:3485227-3485246 | None:intergenic | 40.0% | |
| GAATCCTATCTATCCGATGT+GGG | - | chr4_4:3485366-3485385 | None:intergenic | 40.0% | |
| AGAATCCTATCTATCCGATG+TGG | - | chr4_4:3485367-3485386 | None:intergenic | 40.0% | |
| ACTCATCCTTACAAAACAGG+CGG | - | chr4_4:3485432-3485451 | None:intergenic | 40.0% | |
| CTCTCACCCTTGAAAAATGA+AGG | - | chr4_4:3485578-3485597 | None:intergenic | 40.0% | |
| !!! | GAGAGTATTTTGGCAGATTC+TGG | + | chr4_4:3485593-3485612 | Msa0664490:CDS | 40.0% |
| ATTGCTCTATCTCAAAGGAC+CGG | + | chr4_4:3485635-3485654 | Msa0664490:CDS | 40.0% | |
| CATTCTCAACCTGAAAAAGC+AGG | - | chr4_4:3485774-3485793 | None:intergenic | 40.0% | |
| ! | AATCCTCATAGTGGAACAAC+AGG | + | chr4_4:3485850-3485869 | Msa0664490:CDS | 40.0% |
| GTGTTAATACCTATCACCCA+TGG | - | chr4_4:3485899-3485918 | None:intergenic | 40.0% | |
| ! | GCAGAAGTTTATGTCACTTG+CGG | + | chr4_4:3486638-3486657 | Msa0664490:CDS | 40.0% |
| TGGCATAAACACTTGTGAGA+TGG | - | chr4_4:3486979-3486998 | None:intergenic | 40.0% | |
| ! | GACTTTATTTGCAGCTTGCT+TGG | + | chr4_4:3487094-3487113 | Msa0664490:intron | 40.0% |
| ! | CTATTTCTTTCATTCTGGGG+AGG | + | chr4_4:3487167-3487186 | Msa0664490:intron | 40.0% |
| !! | GCATTTTAAGGACATGAGTG+TGG | + | chr4_4:3487286-3487305 | Msa0664490:intron | 40.0% |
| TTGAGTCACTCTTCTACCTT+TGG | + | chr4_4:3487342-3487361 | Msa0664490:CDS | 40.0% | |
| ! | ATCTTGGTATGTCTTGTTGC+CGG | - | chr4_4:3487375-3487394 | None:intergenic | 40.0% |
| GCAACAAGACATACCAAGAT+TGG | + | chr4_4:3487375-3487394 | Msa0664490:CDS | 40.0% | |
| GTACTCTCTTTGTCCCATAT+TGG | + | chr4_4:3487526-3487545 | Msa0664490:intron | 40.0% | |
| CTTTAACACCAGTGTTAACC+TGG | - | chr4_4:3487683-3487702 | None:intergenic | 40.0% | |
| GATGCAAAGTTTCTTTCTCG+CGG | + | chr4_4:3487710-3487729 | Msa0664490:CDS | 40.0% | |
| ! | TCTTCTCTTTTCGCCTTCTT+CGG | + | chr4_4:3487752-3487771 | Msa0664490:CDS | 40.0% |
| TCTAATGGAATGACCGAAGA+AGG | - | chr4_4:3487768-3487787 | None:intergenic | 40.0% | |
| CGGTCATTCCATTAGATGAA+TGG | + | chr4_4:3487772-3487791 | Msa0664490:CDS | 40.0% | |
| TCCTTGTCACAATCCTCAAA+GGG | - | chr4_4:3487818-3487837 | None:intergenic | 40.0% | |
| TTCCTTGTCACAATCCTCAA+AGG | - | chr4_4:3487819-3487838 | None:intergenic | 40.0% | |
| ! | TCATGGTAGAGAAGCATGAA+CGG | - | chr4_4:3487931-3487950 | None:intergenic | 40.0% |
| AGTGGTTCATCAACTAGTCA+TGG | - | chr4_4:3487948-3487967 | None:intergenic | 40.0% | |
| TCAACCAAGATTCAAAGACG+GGG | + | chr4_4:3487968-3487987 | Msa0664490:three_prime_UTR | 40.0% | |
| AATTCCCCGTCTTTGAATCT+TGG | - | chr4_4:3487975-3487994 | None:intergenic | 40.0% | |
| !! | ACGGGGAATTTGTTCCATTT+TGG | + | chr4_4:3487985-3488004 | Msa0664490:three_prime_UTR | 40.0% |
| ACATCTTACAGGCTCCAAAA+TGG | - | chr4_4:3488002-3488021 | None:intergenic | 40.0% | |
| ! | TGAAGGTTCTGACATCTTAC+AGG | - | chr4_4:3488013-3488032 | None:intergenic | 40.0% |
| TCACAATTGCTTCCCAATGA+AGG | - | chr4_4:3488030-3488049 | None:intergenic | 40.0% | |
| TTGGGAAGCAATTGTGAAAC+AGG | + | chr4_4:3488033-3488052 | Msa0664490:three_prime_UTR | 40.0% | |
| GGACGCTTCAAGTAATAAGC+TGG | - | chr4_4:3481268-3481287 | None:intergenic | 45.0% | |
| !! | GTGTAGCTTTGTTGTGTAGC+GGG | + | chr4_4:3481874-3481893 | Msa0664490:intron | 45.0% |
| TCGCAGATCACAGAAAATGG+CGG | - | chr4_4:3481911-3481930 | None:intergenic | 45.0% | |
| TGTCTGTGCCAATGCTTCAT+AGG | - | chr4_4:3482081-3482100 | None:intergenic | 45.0% | |
| GCAACGATGCTTCATATTGC+AGG | - | chr4_4:3482189-3482208 | None:intergenic | 45.0% | |
| TGAGATGGCCTGCATACATT+TGG | + | chr4_4:3482810-3482829 | Msa0664490:intron | 45.0% | |
| TTGTCGTCTGCCAATCAATC+TGG | + | chr4_4:3482885-3482904 | Msa0664490:intron | 45.0% | |
| GCCAAGATGAACTACAGGTA+TGG | + | chr4_4:3483228-3483247 | Msa0664490:intron | 45.0% | |
| TACCAGCCTCAGTCAAAAAG+TGG | + | chr4_4:3483476-3483495 | Msa0664490:intron | 45.0% | |
| !! | AGTGGTGTCAATAGCTTTGG+AGG | + | chr4_4:3483494-3483513 | Msa0664490:CDS | 45.0% |
| !! | GTCAATAGCTTTGGAGGTCT+TGG | + | chr4_4:3483500-3483519 | Msa0664490:CDS | 45.0% |
| GTCTTCATATGCAGGGGAAA+AGG | - | chr4_4:3483608-3483627 | None:intergenic | 45.0% | |
| AACCAGGTCTTCATATGCAG+GGG | - | chr4_4:3483614-3483633 | None:intergenic | 45.0% | |
| CAACCAGGTCTTCATATGCA+GGG | - | chr4_4:3483615-3483634 | None:intergenic | 45.0% | |
| ACAACCAGGTCTTCATATGC+AGG | - | chr4_4:3483616-3483635 | None:intergenic | 45.0% | |
| TCACCACAATCCAGAGTAGT+AGG | + | chr4_4:3484240-3484259 | Msa0664490:intron | 45.0% | |
| CAGATAGATTACTGCCTGCA+TGG | + | chr4_4:3484328-3484347 | Msa0664490:CDS | 45.0% | |
| GCATGTGTAGAAACTTACCC+CGG | - | chr4_4:3484424-3484443 | None:intergenic | 45.0% | |
| CCACAAAAGCCACACCTTTA+TGG | - | chr4_4:3484555-3484574 | None:intergenic | 45.0% | |
| !! | CCATAAAGGTGTGGCTTTTG+TGG | + | chr4_4:3484552-3484571 | Msa0664490:intron | 45.0% |
| CATGCCTGACTTTAGGTCAA+AGG | + | chr4_4:3485048-3485067 | Msa0664490:intron | 45.0% | |
| ! | ATTTGTTAGCGGCCAACACT+CGG | + | chr4_4:3485099-3485118 | Msa0664490:intron | 45.0% |
| GACATGGTATCAGAGCCTAT+CGG | + | chr4_4:3485236-3485255 | Msa0664490:intron | 45.0% | |
| ACATGGTATCAGAGCCTATC+GGG | + | chr4_4:3485237-3485256 | Msa0664490:intron | 45.0% | |
| TAGTCCCACATCGGATAGAT+AGG | + | chr4_4:3485359-3485378 | Msa0664490:intron | 45.0% | |
| TACAAAACAGGCGGCTTGTA+CGG | - | chr4_4:3485423-3485442 | None:intergenic | 45.0% | |
| ! | TACAAGCCGCCTGTTTTGTA+AGG | + | chr4_4:3485423-3485442 | Msa0664490:intron | 45.0% |
| ! | AGACCCAAAGTATCAGCAGA+AGG | + | chr4_4:3485658-3485677 | Msa0664490:CDS | 45.0% |
| !!! | GATTTGCTCCCTGCTTTTTC+AGG | + | chr4_4:3485762-3485781 | Msa0664490:intron | 45.0% |
| TAGCCTGTTGTTCCACTATG+AGG | - | chr4_4:3485856-3485875 | None:intergenic | 45.0% | |
| GGCTACTCTCCTATCACATT+TGG | + | chr4_4:3485871-3485890 | Msa0664490:CDS | 45.0% | |
| TTCATCCATCTGCAGGTACT+CGG | - | chr4_4:3486556-3486575 | None:intergenic | 45.0% | |
| !! | ATGCTTGCTTTGGGATCATC+TGG | + | chr4_4:3486597-3486616 | Msa0664490:CDS | 45.0% |
| !! | GCTTTGGGATCATCTGGTTA+TGG | + | chr4_4:3486603-3486622 | Msa0664490:CDS | 45.0% |
| ! | GTTTATGTCACTTGCGGAAG+AGG | + | chr4_4:3486644-3486663 | Msa0664490:CDS | 45.0% |
| ! | CTTGTGAGATGGTTTGGAAG+AGG | - | chr4_4:3486968-3486987 | None:intergenic | 45.0% |
| ACATGAGTGTGGGTACATCA+TGG | + | chr4_4:3487297-3487316 | Msa0664490:CDS | 45.0% | |
| GTACATCATGGAACATCCTG+AGG | + | chr4_4:3487309-3487328 | Msa0664490:CDS | 45.0% | |
| AAGAGTGACTCAACTGTCTC+TGG | - | chr4_4:3487335-3487354 | None:intergenic | 45.0% | |
| AGACATACCAAGATTGGGGT+TGG | + | chr4_4:3487381-3487400 | Msa0664490:CDS | 45.0% | |
| GAAGAACTCTCGCATAGAGT+CGG | + | chr4_4:3487424-3487443 | Msa0664490:CDS | 45.0% | |
| AAGAACTCTCGCATAGAGTC+GGG | + | chr4_4:3487425-3487444 | Msa0664490:CDS | 45.0% | |
| ATGTTGTTGTCTCACTTCCC+AGG | + | chr4_4:3487662-3487681 | Msa0664490:intron | 45.0% | |
| ! | ACCCTTTGAGGATTGTGACA+AGG | + | chr4_4:3487814-3487833 | Msa0664490:CDS | 45.0% |
| GATTGTGACAAGGAACGAAG+CGG | + | chr4_4:3487824-3487843 | Msa0664490:CDS | 45.0% | |
| TCCTAGAATAGGTGGCAGAA+AGG | + | chr4_4:3487884-3487903 | Msa0664490:CDS | 45.0% | |
| TCCTTTCTGCCACCTATTCT+AGG | - | chr4_4:3487888-3487907 | None:intergenic | 45.0% | |
| AGAATAGGTGGCAGAAAGGA+AGG | + | chr4_4:3487888-3487907 | Msa0664490:CDS | 45.0% | |
| !!! | ATATATTCATTTTTTTTTTA+CGG | + | chr4_4:3485698-3485717 | Msa0664490:intron | 5.0% |
| !! | TTTGAAAATAAAAAATTATA+AGG | - | chr4_4:3486249-3486268 | None:intergenic | 5.0% |
| !! | ATTTATTAAAAAAAATAAAG+TGG | - | chr4_4:3487589-3487608 | None:intergenic | 5.0% |
| CAAGACACGCCTTTGATCAG+AGG | - | chr4_4:3481457-3481476 | None:intergenic | 50.0% | |
| GTGTCTTGTGTCTCAGTGTC+TGG | + | chr4_4:3481469-3481488 | Msa0664490:intron | 50.0% | |
| TCTGGTGTACGATGCACATG+TGG | - | chr4_4:3482162-3482181 | None:intergenic | 50.0% | |
| !! | AACGGCGGGTGTTGATTGTT+TGG | + | chr4_4:3482455-3482474 | Msa0664490:intron | 50.0% |
| CAGGTGTGCCAAATGTATGC+AGG | - | chr4_4:3482821-3482840 | None:intergenic | 50.0% | |
| ACGAAAGTAGGAGTGGTGTC+AGG | - | chr4_4:3482840-3482859 | None:intergenic | 50.0% | |
| TGGCAGACGACAATTCACGT+CGG | - | chr4_4:3482878-3482897 | None:intergenic | 50.0% | |
| ! | TCCTTTGGGGGCTAAGCAAT+TGG | + | chr4_4:3483022-3483041 | Msa0664490:intron | 50.0% |
| TCCAATTGCTTAGCCCCCAA+AGG | - | chr4_4:3483026-3483045 | None:intergenic | 50.0% | |
| AAAGTGCATGATGGCACTGC+CGG | + | chr4_4:3483071-3483090 | Msa0664490:CDS | 50.0% | |
| CAGGTCCACTAAAGAGGTCT+TGG | + | chr4_4:3483121-3483140 | Msa0664490:CDS | 50.0% | |
| ATGGGGCCAAGATGAACTAC+AGG | + | chr4_4:3483223-3483242 | Msa0664490:CDS | 50.0% | |
| !!! | CACCACTTTTTGACTGAGGC+TGG | - | chr4_4:3483481-3483500 | None:intergenic | 50.0% |
| TTCCCCTGCATATGAAGACC+TGG | + | chr4_4:3483609-3483628 | Msa0664490:intron | 50.0% | |
| CCACCTACTACTCTGGATTG+TGG | - | chr4_4:3484246-3484265 | None:intergenic | 50.0% | |
| CCACAATCCAGAGTAGTAGG+TGG | + | chr4_4:3484243-3484262 | Msa0664490:intron | 50.0% | |
| AAGAAGGCCACCTACTACTC+TGG | - | chr4_4:3484253-3484272 | None:intergenic | 50.0% | |
| TTTGTTAGCGGCCAACACTC+GGG | + | chr4_4:3485100-3485119 | Msa0664490:intron | 50.0% | |
| GACTAAATCCACCCGAGTGT+TGG | - | chr4_4:3485114-3485133 | None:intergenic | 50.0% | |
| !! | CAAAACTGGCTTGTACGGTG+AGG | - | chr4_4:3485188-3485207 | None:intergenic | 50.0% |
| TGTGTTAGCGGCCAACACTT+GGG | + | chr4_4:3485327-3485346 | Msa0664490:intron | 50.0% | |
| TAAATCCCACCCCCAAGTGT+TGG | - | chr4_4:3485341-3485360 | None:intergenic | 50.0% | |
| GGTGGGATTTAGTCCCACAT+CGG | + | chr4_4:3485350-3485369 | Msa0664490:intron | 50.0% | |
| TGACAAACACAGCCAGAGTC+AGG | - | chr4_4:3485514-3485533 | None:intergenic | 50.0% | |
| GACTCTGGCTGTGTTTGTCA+CGG | + | chr4_4:3485514-3485533 | Msa0664490:intron | 50.0% | |
| CTGCTGATACTTTGGGTCTC+CGG | - | chr4_4:3485657-3485676 | None:intergenic | 50.0% | |
| !!! | TTTTTTTACGGGGAAGGGGG+AGG | + | chr4_4:3485710-3485729 | Msa0664490:intron | 50.0% |
| TCCTATCACATTTGGCGCCA+TGG | + | chr4_4:3485879-3485898 | Msa0664490:CDS | 50.0% | |
| CCTATCACATTTGGCGCCAT+GGG | + | chr4_4:3485880-3485899 | Msa0664490:CDS | 50.0% | |
| TTCAACCGAGTACCTGCAGA+TGG | + | chr4_4:3486548-3486567 | Msa0664490:intron | 50.0% | |
| ACGCTAGTTCATCCATCTGC+AGG | - | chr4_4:3486563-3486582 | None:intergenic | 50.0% | |
| AACTAGCGTGCTTTGCTCCA+GGG | + | chr4_4:3486574-3486593 | Msa0664490:CDS | 50.0% | |
| TTCTACCTTTGGCGCCTAAC+CGG | + | chr4_4:3487353-3487372 | Msa0664490:CDS | 50.0% | |
| ! | GGTATGTCTTGTTGCCGGTT+AGG | - | chr4_4:3487370-3487389 | None:intergenic | 50.0% |
| GTCGGGCTATGTTGGACTAA+AGG | + | chr4_4:3487442-3487461 | Msa0664490:CDS | 50.0% | |
| !! | TCCCATATTGGGTGCCACTT+TGG | + | chr4_4:3487538-3487557 | Msa0664490:intron | 50.0% |
| GCCAAAGTGGCACCCAATAT+GGG | - | chr4_4:3487542-3487561 | None:intergenic | 50.0% | |
| TGCCAAAGTGGCACCCAATA+TGG | - | chr4_4:3487543-3487562 | None:intergenic | 50.0% | |
| CTCACTTCCCAGGTTAACAC+TGG | + | chr4_4:3487672-3487691 | Msa0664490:intron | 50.0% | |
| ! | ACACAGAAGCACACCCTTTG+AGG | + | chr4_4:3487802-3487821 | Msa0664490:CDS | 50.0% |
| TAGGTGGCAGAAAGGAAGGT+CGG | + | chr4_4:3487892-3487911 | Msa0664490:CDS | 50.0% | |
| CAGACGACAATTCACGTCGG+AGG | - | chr4_4:3482875-3482894 | None:intergenic | 55.0% | |
| CTTCCTTGTGGCTGTGTTGC+CGG | + | chr4_4:3482948-3482967 | Msa0664490:intron | 55.0% | |
| TTCCTTGTGGCTGTGTTGCC+GGG | + | chr4_4:3482949-3482968 | Msa0664490:intron | 55.0% | |
| AAGTGCATGATGGCACTGCC+GGG | + | chr4_4:3483072-3483091 | Msa0664490:CDS | 55.0% | |
| TCCCTTCGAGTCAACCTTCC+CGG | - | chr4_4:3483093-3483112 | None:intergenic | 55.0% | |
| CCTGTAGGTGTGTTCCATGC+AGG | - | chr4_4:3484345-3484364 | None:intergenic | 55.0% | |
| CCTGCATGGAACACACCTAC+AGG | + | chr4_4:3484342-3484361 | Msa0664490:CDS | 55.0% | |
| CAAGGACGTGCACACAATCC+TGG | + | chr4_4:3484393-3484412 | Msa0664490:CDS | 55.0% | |
| GACGTGCACACAATCCTGGA+TGG | + | chr4_4:3484397-3484416 | Msa0664490:CDS | 55.0% | |
| GCACACAATCCTGGATGGAC+CGG | + | chr4_4:3484402-3484421 | Msa0664490:CDS | 55.0% | |
| CACACAATCCTGGATGGACC+GGG | + | chr4_4:3484403-3484422 | Msa0664490:CDS | 55.0% | |
| ACACAATCCTGGATGGACCG+GGG | + | chr4_4:3484404-3484423 | Msa0664490:CDS | 55.0% | |
| AAACTTACCCCGGTCCATCC+AGG | - | chr4_4:3484414-3484433 | None:intergenic | 55.0% | |
| ! | AGGCCCCGATTTTCGTGACA+TGG | + | chr4_4:3485220-3485239 | Msa0664490:intron | 55.0% |
| AGCCTATCGGGACCATCGTT+GGG | + | chr4_4:3485249-3485268 | Msa0664490:intron | 55.0% | |
| AGATGCAGGAAGCCCAACGA+TGG | - | chr4_4:3485264-3485283 | None:intergenic | 55.0% | |
| TTCCTGCATCTCCACGCTTC+AGG | + | chr4_4:3485273-3485292 | Msa0664490:intron | 55.0% | |
| GTGTGTTAGCGGCCAACACT+TGG | + | chr4_4:3485326-3485345 | Msa0664490:intron | 55.0% | |
| GTGTTAGCGGCCAACACTTG+GGG | + | chr4_4:3485328-3485347 | Msa0664490:intron | 55.0% | |
| TGTTAGCGGCCAACACTTGG+GGG | + | chr4_4:3485329-3485348 | Msa0664490:intron | 55.0% | |
| CCCATGGCGCCAAATGTGAT+AGG | - | chr4_4:3485883-3485902 | None:intergenic | 55.0% | |
| CATTTGGCGCCATGGGTGAT+AGG | + | chr4_4:3485887-3485906 | Msa0664490:CDS | 55.0% | |
| GAACTAGCGTGCTTTGCTCC+AGG | + | chr4_4:3486573-3486592 | Msa0664490:CDS | 55.0% | |
| TGCTCCAGGGATGCTTGCTT+TGG | + | chr4_4:3486587-3486606 | Msa0664490:CDS | 55.0% | |
| GCTCCAGGGATGCTTGCTTT+GGG | + | chr4_4:3486588-3486607 | Msa0664490:CDS | 55.0% | |
| GATCCCAAAGCAAGCATCCC+TGG | - | chr4_4:3486594-3486613 | None:intergenic | 55.0% | |
| ACTCAACTGTCTCTGGCCTC+AGG | - | chr4_4:3487328-3487347 | None:intergenic | 55.0% | |
| CGCATAGAGTCGGGCTATGT+TGG | + | chr4_4:3487434-3487453 | Msa0664490:CDS | 55.0% | |
| TGGCAGAAAGGAAGGTCGGT+CGG | + | chr4_4:3487896-3487915 | Msa0664490:CDS | 55.0% | |
| !! | TGCCGGGAAGGTTGACTCGA+AGG | + | chr4_4:3483088-3483107 | Msa0664490:CDS | 60.0% |
| !! | GCCGGGAAGGTTGACTCGAA+GGG | + | chr4_4:3483089-3483108 | Msa0664490:CDS | 60.0% |
| GAGTTTGCGACCCAGCTGTC+AGG | - | chr4_4:3484046-3484065 | None:intergenic | 60.0% | |
| CAGCTGGGTCGCAAACTCTC+TGG | + | chr4_4:3484048-3484067 | Msa0664490:intron | 60.0% | |
| GAGCCTATCGGGACCATCGT+TGG | + | chr4_4:3485248-3485267 | Msa0664490:intron | 60.0% | |
| AGCCCAACGATGGTCCCGAT+AGG | - | chr4_4:3485254-3485273 | None:intergenic | 60.0% | |
| TCTCCACGCTTCAGGCCCAT+TGG | + | chr4_4:3485281-3485300 | Msa0664490:intron | 60.0% | |
| CTCCACGCTTCAGGCCCATT+GGG | + | chr4_4:3485282-3485301 | Msa0664490:intron | 60.0% | |
| TCCACGCTTCAGGCCCATTG+GGG | + | chr4_4:3485283-3485302 | Msa0664490:intron | 60.0% | |
| AACAGGCGGCTTGTACGGTG+AGG | - | chr4_4:3485418-3485437 | None:intergenic | 60.0% | |
| ! | TGTTGCCGGTTAGGCGCCAA+AGG | - | chr4_4:3487361-3487380 | None:intergenic | 60.0% |
| GGCAGAAAGGAAGGTCGGTC+GGG | + | chr4_4:3487897-3487916 | Msa0664490:CDS | 60.0% | |
| TGCCCGGCAACACAGCCACA+AGG | - | chr4_4:3482954-3482973 | None:intergenic | 65.0% | |
| GCATGATGGCACTGCCGGGA+AGG | + | chr4_4:3483076-3483095 | Msa0664490:CDS | 65.0% | |
| GTTAGCGGCCAACACTCGGG+TGG | + | chr4_4:3485103-3485122 | Msa0664490:intron | 65.0% | |
| GGCCTGAAGCGTGGAGATGC+AGG | - | chr4_4:3485278-3485297 | None:intergenic | 65.0% | |
| ACGCTTCAGGCCCATTGGGG+CGG | + | chr4_4:3485286-3485305 | Msa0664490:intron | 65.0% | |
| ACGCTTCAGCCCGCCCCAAT+GGG | - | chr4_4:3485299-3485318 | None:intergenic | 65.0% | |
| ! | GCGTGAGGGGGGTGTGTTAG+CGG | + | chr4_4:3485315-3485334 | Msa0664490:intron | 65.0% |
| TAGCGGCCAACACTTGGGGG+TGG | + | chr4_4:3485332-3485351 | Msa0664490:intron | 65.0% | |
| AGCGGCCAACACTTGGGGGT+GGG | + | chr4_4:3485333-3485352 | Msa0664490:intron | 65.0% | |
| GCCCCAATGGGCCTGAAGCG+TGG | - | chr4_4:3485287-3485306 | None:intergenic | 70.0% | |
| CGCTTCAGGCCCATTGGGGC+GGG | + | chr4_4:3485287-3485306 | Msa0664490:intron | 70.0% | |
| CACGCTTCAGCCCGCCCCAA+TGG | - | chr4_4:3485300-3485319 | None:intergenic | 70.0% | |
| !! | TTGGGGCGGGCTGAAGCGTG+AGG | + | chr4_4:3485300-3485319 | Msa0664490:intron | 70.0% |
| !! | TGGGGCGGGCTGAAGCGTGA+GGG | + | chr4_4:3485301-3485320 | Msa0664490:intron | 70.0% |
| !! | GGGGCGGGCTGAAGCGTGAG+GGG | + | chr4_4:3485302-3485321 | Msa0664490:intron | 75.0% |
| !! | GGGCGGGCTGAAGCGTGAGG+GGG | + | chr4_4:3485303-3485322 | Msa0664490:intron | 75.0% |
| !! | GGCGGGCTGAAGCGTGAGGG+GGG | + | chr4_4:3485304-3485323 | Msa0664490:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3481208 | 3488271 | 3481208 | ID=Msa0664490;Name=Msa0664490 |
| chr4_4 | mRNA | 3481208 | 3488271 | 3481208 | ID=Msa0664490-mRNA-1;Parent=Msa0664490;Name=Msa0664490-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.83|0.92|1|1|1|13|348|534 |
| chr4_4 | exon | 3481208 | 3481324 | 3481208 | ID=Msa0664490-mRNA-1:exon:1100;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3482646 | 3482693 | 3482646 | ID=Msa0664490-mRNA-1:exon:1101;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3483056 | 3483244 | 3483056 | ID=Msa0664490-mRNA-1:exon:1102;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3483482 | 3483594 | 3483482 | ID=Msa0664490-mRNA-1:exon:1103;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3484051 | 3484116 | 3484051 | ID=Msa0664490-mRNA-1:exon:1104;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3484254 | 3484425 | 3484254 | ID=Msa0664490-mRNA-1:exon:1105;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3485590 | 3485679 | 3485590 | ID=Msa0664490-mRNA-1:exon:1106;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3485784 | 3485908 | 3485784 | ID=Msa0664490-mRNA-1:exon:1107;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3486055 | 3486120 | 3486055 | ID=Msa0664490-mRNA-1:exon:1108;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3486358 | 3486466 | 3486358 | ID=Msa0664490-mRNA-1:exon:1109;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3486567 | 3486665 | 3486567 | ID=Msa0664490-mRNA-1:exon:1110;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3487296 | 3487466 | 3487296 | ID=Msa0664490-mRNA-1:exon:1111;Parent=Msa0664490-mRNA-1 |
| chr4_4 | exon | 3487684 | 3488271 | 3487684 | ID=Msa0664490-mRNA-1:exon:1112;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3481208 | 3481324 | 3481208 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3482646 | 3482693 | 3482646 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3483056 | 3483244 | 3483056 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3483482 | 3483594 | 3483482 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3484051 | 3484116 | 3484051 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3484254 | 3484425 | 3484254 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3485590 | 3485679 | 3485590 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3485784 | 3485908 | 3485784 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3486055 | 3486120 | 3486055 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3486358 | 3486466 | 3486358 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3486567 | 3486665 | 3486567 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3487296 | 3487466 | 3487296 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | CDS | 3487684 | 3487923 | 3487684 | ID=Msa0664490-mRNA-1:cds;Parent=Msa0664490-mRNA-1 |
| chr4_4 | three_prime_UTR | 3487924 | 3488271 | 3487924 | ID=Msa0664490-mRNA-1:three_prime_utr;Parent=Msa0664490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
