AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1272120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272120 MtrunA17_Chr8g0336741 91.164 464 41 0 5 468 12 475 0.0 876
Msa1272120 MtrunA17_Chr8g0336651 87.366 467 59 0 1 467 1 467 0.0 830
Msa1272120 MtrunA17_Chr8g0336651 72.766 470 124 3 3 468 778 1247 0.0 695
Msa1272120 MtrunA17_Chr8g0336651 65.357 280 67 1 188 467 528 777 1.29e-115 367
Msa1272120 MtrunA17_Chr8g0336731 89.325 459 49 0 9 467 35 493 0.0 823
Msa1272120 MtrunA17_Chr1g0153451 76.546 469 107 2 1 468 1 467 0.0 729
Msa1272120 MtrunA17_Chr8g0336691 71.215 469 133 1 1 467 8 476 0.0 687
Msa1272120 MtrunA17_Chr8g0336691 72.009 468 129 2 3 468 916 1383 0.0 682
Msa1272120 MtrunA17_Chr8g0336691 68.817 465 119 1 3 467 477 915 0.0 657
Msa1272120 MtrunA17_Chr7g0232411 58.333 468 194 1 1 467 1 468 0.0 571
Msa1272120 MtrunA17_Chr7g0232391 58.333 468 194 1 1 467 1 468 0.0 562
Msa1272120 MtrunA17_Chr7g0232341 56.290 469 203 2 1 467 1 469 0.0 546
Msa1272120 MtrunA17_Chr7g0232331 57.019 463 197 2 1 461 1 463 0.0 543
Msa1272120 MtrunA17_Chr7g0232401 53.105 467 210 4 1 461 1 464 9.05e-176 501
Msa1272120 MtrunA17_Chr7g0275511 51.299 462 223 2 7 466 16 477 1.40e-173 496
Msa1272120 MtrunA17_Chr7g0232311 55.864 469 202 3 1 467 1 466 4.67e-173 494
Msa1272120 MtrunA17_Chr8g0334851 51.471 476 218 6 1 467 1 472 2.90e-170 487
Msa1272120 MtrunA17_Chr7g0232351 60.053 378 151 0 1 378 1 378 3.07e-164 468
Msa1272120 MtrunA17_Chr8g0373301 51.828 465 213 6 4 463 7 465 1.50e-163 470
Msa1272120 MtrunA17_Chr6g0449931 50.636 472 226 4 1 467 1 470 1.36e-160 462
Msa1272120 MtrunA17_Chr8g0339631 50.633 474 224 6 1 467 1 471 1.84e-157 455
Msa1272120 MtrunA17_Chr8g0334861 50.000 474 222 9 1 467 1 466 1.53e-156 452
Msa1272120 MtrunA17_Chr8g0339461 49.686 477 229 5 1 468 1 475 2.53e-155 449
Msa1272120 MtrunA17_Chr6g0459311 48.188 469 235 6 1 465 8 472 2.59e-154 447
Msa1272120 MtrunA17_Chr8g0339451 49.351 462 223 5 15 467 7 466 1.17e-150 437
Msa1272120 MtrunA17_Chr6g0486251 46.908 469 241 6 1 465 1 465 6.76e-150 435
Msa1272120 MtrunA17_Chr6g0486201 46.908 469 241 6 1 465 1 465 6.76e-150 435
Msa1272120 MtrunA17_Chr8g0339441 50.210 476 184 7 1 467 1 432 9.30e-150 434
Msa1272120 MtrunA17_Chr8g0347271 45.356 463 245 4 7 467 20 476 2.99e-146 426
Msa1272120 MtrunA17_Chr8g0347281 45.572 463 244 4 7 467 19 475 2.90e-145 424
Msa1272120 MtrunA17_Chr8g0361371 46.025 478 241 8 2 468 3 474 4.08e-141 413
Msa1272120 MtrunA17_Chr8g0335161 46.414 474 242 8 1 467 1 469 7.34e-141 412
Msa1272120 MtrunA17_Chr8g0335141 46.089 473 244 7 1 467 4 471 7.77e-138 404
Msa1272120 MtrunA17_Chr8g0334831 44.672 488 244 9 1 468 1 482 3.89e-134 395
Msa1272120 MtrunA17_Chr1g0153461 76.852 216 49 1 254 468 1 216 1.23e-120 351
Msa1272120 MtrunA17_Chr8g0339601 51.807 332 154 3 142 467 2 333 6.72e-114 338
Msa1272120 MtrunA17_Chr8g0370941 39.220 487 262 13 3 461 5 485 1.94e-96 300
Msa1272120 MtrunA17_Chr6g0462541 34.884 473 281 10 7 465 5 464 4.18e-89 280
Msa1272120 MtrunA17_Chr6g0462531 36.000 475 274 12 7 465 5 465 3.12e-87 275
Msa1272120 MtrunA17_Chr6g0462571 34.369 483 268 12 7 465 5 462 4.44e-87 275
Msa1272120 MtrunA17_Chr5g0403641 35.699 479 257 12 1 461 54 499 2.74e-86 273
Msa1272120 MtrunA17_Chr6g0462521 33.898 472 274 11 7 465 5 451 2.62e-85 269
Msa1272120 MtrunA17_Chr6g0462551 32.150 479 287 9 7 465 5 465 6.13e-83 264
Msa1272120 MtrunA17_Chr3g0079731 32.099 486 302 11 1 464 1 480 1.70e-78 252
Msa1272120 MtrunA17_Chr6g0449991 41.420 338 173 5 1 333 1 318 2.62e-74 236
Msa1272120 MtrunA17_Chr8g0337381 78.030 132 25 2 338 468 1 129 9.84e-69 215
Msa1272120 MtrunA17_Chr5g0442541 31.447 477 291 12 3 460 2 461 2.30e-64 215
Msa1272120 MtrunA17_Chr5g0442491 31.303 476 302 11 3 460 2 470 9.05e-64 214
Msa1272120 MtrunA17_Chr5g0442521 31.667 480 296 14 3 460 2 471 1.53e-62 210
Msa1272120 MtrunA17_Chr5g0448521 30.252 476 300 14 3 460 2 463 2.83e-62 209
Msa1272120 MtrunA17_Chr5g0442581 30.353 481 302 12 3 460 2 472 3.32e-62 211
Msa1272120 MtrunA17_Chr5g0442561 30.707 495 294 16 3 468 2 476 5.84e-62 209
Msa1272120 MtrunA17_Chr5g0429711 30.786 471 296 11 1 460 6 457 1.12e-59 202
Msa1272120 MtrunA17_Chr5g0414331 30.290 482 268 13 4 460 11 449 9.66e-59 200
Msa1272120 MtrunA17_Chr5g0429681 31.340 485 280 16 1 460 39 495 2.67e-58 200
Msa1272120 MtrunA17_Chr3g0078841 28.687 495 282 15 6 460 10 473 9.23e-57 195
Msa1272120 MtrunA17_Chr5g0414321 30.165 484 266 14 4 460 9 447 1.13e-56 194
Msa1272120 MtrunA17_Chr8g0366391 30.675 489 297 14 5 467 8 480 2.92e-55 191
Msa1272120 MtrunA17_Chr5g0442601 29.774 487 297 15 3 460 401 871 3.17e-55 197
Msa1272120 MtrunA17_Chr5g0442601 32.410 361 185 11 53 401 20 333 1.40e-43 164
Msa1272120 MtrunA17_Chr2g0302991 30.388 464 292 14 11 460 12 458 5.69e-55 190
Msa1272120 MtrunA17_Chr1g0159551 31.135 379 239 8 90 460 91 455 1.03e-54 189
Msa1272120 MtrunA17_Chr2g0302961 29.684 475 284 17 11 460 12 461 3.07e-54 188
Msa1272120 MtrunA17_Chr1g0173121 31.481 378 238 8 90 460 95 458 4.80e-54 187
Msa1272120 MtrunA17_Chr5g0442511 29.918 488 268 20 3 460 46 489 1.09e-53 187
Msa1272120 MtrunA17_Chr6g0454151 32.527 372 213 9 108 460 121 473 3.08e-53 186
Msa1272120 MtrunA17_Chr3g0118691 29.032 496 289 15 1 460 10 478 3.63e-53 186
Msa1272120 MtrunA17_Chr4g0053321 30.297 472 294 11 4 460 24 475 5.88e-53 186
Msa1272120 MtrunA17_Chr8g0359821 28.629 496 289 17 2 460 6 473 1.75e-52 184
Msa1272120 MtrunA17_Chr4g0014061 40.217 276 130 9 207 460 206 468 2.02e-52 184
Msa1272120 MtrunA17_Chr5g0426431 30.629 493 273 17 6 460 12 473 2.63e-52 183
Msa1272120 MtrunA17_Chr3g0118671 29.817 493 289 16 1 460 1 469 6.53e-52 182
Msa1272120 MtrunA17_Chr3g0092641 30.785 497 267 19 6 460 12 473 8.72e-52 182
Msa1272120 MtrunA17_Chr3g0118701 29.747 474 270 15 6 443 15 461 9.31e-52 182
Msa1272120 MtrunA17_Chr6g0464841 30.316 475 276 15 6 460 11 450 2.07e-51 180
Msa1272120 MtrunA17_Chr3g0112771 35.312 337 183 10 129 460 141 447 3.44e-51 180
Msa1272120 MtrunA17_Chr4g0053501 28.723 470 309 11 2 460 6 460 8.14e-51 180
Msa1272120 MtrunA17_Chr8g0382021 30.958 407 248 11 65 460 100 484 1.01e-50 179
Msa1272120 MtrunA17_Chr6g0454301 28.659 492 286 13 6 460 263 726 1.25e-50 183
Msa1272120 MtrunA17_Chr6g0454301 33.473 239 133 4 232 460 3 225 9.32e-37 143
Msa1272120 MtrunA17_Chr3g0118711 29.328 491 284 15 6 460 13 476 1.86e-50 178
Msa1272120 MtrunA17_Chr7g0265141 34.174 357 194 11 123 453 133 474 2.83e-50 178
Msa1272120 MtrunA17_Chr6g0464871 29.873 472 282 13 6 460 23 462 4.05e-50 177
Msa1272120 MtrunA17_Chr6g0454341 26.667 495 292 15 6 460 10 473 4.62e-50 177
Msa1272120 MtrunA17_Chr3g0118721 37.358 265 136 7 208 460 39 285 7.67e-50 172
Msa1272120 MtrunA17_Chr4g0044511 29.959 484 293 15 3 460 37 500 3.32e-49 176
Msa1272120 MtrunA17_Chr1g0207981 32.249 369 210 10 105 460 127 468 5.08e-49 174
Msa1272120 MtrunA17_Chr7g0275681 28.628 503 273 16 6 460 12 476 6.61e-49 174
Msa1272120 MtrunA17_Chr6g0454321 27.500 480 283 13 6 448 10 461 8.26e-49 177
Msa1272120 MtrunA17_Chr5g0419761 36.915 363 186 14 125 460 135 481 1.16e-48 174
Msa1272120 MtrunA17_Chr5g0440421 29.600 500 281 17 2 453 6 482 1.27e-48 174
Msa1272120 MtrunA17_Chr6g0453951 27.767 497 292 15 3 460 54 522 4.77e-48 173
Msa1272120 MtrunA17_Chr8g0336331 30.933 375 218 9 108 460 117 472 4.96e-48 172
Msa1272120 MtrunA17_Chr6g0453961 31.026 390 227 11 93 460 116 485 5.93e-48 172
Msa1272120 MtrunA17_Chr4g0050341 30.446 381 222 8 108 463 127 489 7.81e-48 171
Msa1272120 MtrunA17_Chr6g0454401 27.968 497 292 19 3 460 7 476 1.11e-47 171
Msa1272120 MtrunA17_Chr6g0454201 34.539 304 168 8 169 460 192 476 1.30e-47 171
Msa1272120 MtrunA17_Chr5g0426401 36.066 305 164 9 169 460 20 306 1.57e-47 166
Msa1272120 MtrunA17_Chr6g0464881 27.721 487 290 15 1 461 1 451 1.82e-47 170
Msa1272120 MtrunA17_Chr7g0217881 29.534 386 219 9 93 460 107 457 2.76e-47 169
Msa1272120 MtrunA17_Chr3g0118771 28.717 491 287 16 6 460 21 484 3.73e-47 169
Msa1272120 MtrunA17_Chr6g0454181 27.530 494 291 14 6 460 10 475 6.78e-47 169
Msa1272120 MtrunA17_Chr2g0329111 30.297 472 292 14 1 449 1 458 8.97e-47 169
Msa1272120 MtrunA17_Chr4g0072761 33.428 353 206 10 112 460 121 448 2.23e-46 167
Msa1272120 MtrunA17_Chr6g0454141 29.175 497 287 19 2 460 6 475 3.02e-46 167
Msa1272120 MtrunA17_Chr6g0454191 30.400 375 220 10 108 460 121 476 6.80e-46 166
Msa1272120 MtrunA17_Chr8g0380531 27.984 486 291 12 4 465 8 458 7.79e-46 165
Msa1272120 MtrunA17_Chr6g0464861 29.053 475 281 11 6 460 11 449 8.96e-46 165
Msa1272120 MtrunA17_Chr6g0464921 28.302 477 270 16 6 453 11 444 9.49e-46 165
Msa1272120 MtrunA17_Chr3g0118661 28.367 490 289 12 6 460 13 475 1.29e-45 165
Msa1272120 MtrunA17_Chr7g0265041 28.112 498 291 14 6 460 11 484 2.02e-45 165
Msa1272120 MtrunA17_Chr5g0423981 32.787 305 174 7 168 460 155 440 2.30e-45 164
Msa1272120 MtrunA17_Chr4g0066131 36.594 276 147 9 206 460 202 470 2.84e-45 164
Msa1272120 MtrunA17_Chr2g0278711 28.313 498 286 16 3 461 8 473 3.02e-45 164
Msa1272120 MtrunA17_Chr3g0079711 41.489 188 106 2 283 466 3 190 4.05e-45 155
Msa1272120 MtrunA17_Chr7g0249931 30.835 467 276 16 3 453 37 472 1.20e-44 162
Msa1272120 MtrunA17_Chr7g0249981 29.228 479 275 12 1 453 15 455 1.40e-44 162
Msa1272120 MtrunA17_Chr8g0361411 30.498 482 268 19 6 460 8 449 2.18e-44 161
Msa1272120 MtrunA17_Chr6g0463861 33.818 275 156 8 206 460 201 469 3.69e-44 161
Msa1272120 MtrunA17_Chr6g0454361 31.922 307 172 8 169 460 192 476 4.19e-44 161
Msa1272120 MtrunA17_Chr6g0454331 29.365 378 219 11 108 460 120 474 4.55e-44 161
Msa1272120 MtrunA17_Chr3g0112761 30.959 365 223 12 108 462 102 447 6.62e-44 160
Msa1272120 MtrunA17_Chr6g0454291 31.908 304 176 6 169 460 188 472 6.96e-44 160
Msa1272120 MtrunA17_Chr6g0454221 36.250 240 126 5 232 460 3 226 8.56e-44 156
Msa1272120 MtrunA17_Chr7g0265151 27.888 502 286 13 5 460 8 479 1.02e-43 160
Msa1272120 MtrunA17_Chr6g0454261 30.400 375 219 12 108 460 121 475 1.04e-43 160
Msa1272120 MtrunA17_Chr6g0454211 29.443 377 220 10 108 460 408 762 1.56e-43 163
Msa1272120 MtrunA17_Chr6g0454211 27.925 265 120 10 169 417 61 270 5.34e-18 87.0
Msa1272120 MtrunA17_Chr5g0420801 29.053 475 292 13 6 461 7 455 1.89e-43 159
Msa1272120 MtrunA17_Chr6g0452771 31.016 374 218 10 108 460 121 475 2.61e-43 159
Msa1272120 MtrunA17_Chr7g0265101 29.412 493 289 16 5 458 8 480 3.75e-43 159
Msa1272120 MtrunA17_Chr4g0066151 33.818 275 156 8 206 460 207 475 6.06e-43 158
Msa1272120 MtrunA17_Chr4g0066221 34.354 294 167 8 194 467 196 483 8.10e-43 158
Msa1272120 MtrunA17_Chr4g0011051 28.370 497 288 15 1 453 4 476 1.04e-42 157
Msa1272120 MtrunA17_Chr4g0044521 31.283 374 200 13 111 453 108 455 1.11e-42 157
Msa1272120 MtrunA17_Chr4g0066261 30.946 349 202 9 128 457 146 474 1.98e-42 157
Msa1272120 MtrunA17_Chr7g0243801 34.286 350 191 11 133 460 140 472 4.34e-42 155
Msa1272120 MtrunA17_Chr7g0243931 28.600 493 293 17 5 460 16 486 7.43e-42 155
Msa1272120 MtrunA17_Chr7g0218841 27.983 461 278 15 6 447 6 431 7.58e-42 154
Msa1272120 MtrunA17_Chr7g0265051 28.659 492 292 15 5 458 8 478 8.18e-42 155
Msa1272120 MtrunA17_Chr7g0243631 38.710 279 131 9 207 460 219 482 9.55e-42 155
Msa1272120 MtrunA17_Chr4g0066201 26.501 483 307 13 1 460 13 470 1.16e-41 154
Msa1272120 MtrunA17_Chr6g0454271 33.588 262 145 5 209 460 40 282 1.37e-41 150
Msa1272120 MtrunA17_Chr4g0042891 27.586 493 305 14 2 468 3 469 1.38e-41 154
Msa1272120 MtrunA17_Chr1g0179901 27.435 503 292 20 4 460 14 489 1.73e-41 154
Msa1272120 MtrunA17_Chr8g0377921 27.651 481 289 14 7 457 5 456 2.26e-41 153
Msa1272120 MtrunA17_Chr5g0431441 29.046 482 271 15 6 457 18 458 3.44e-41 153
Msa1272120 MtrunA17_Chr2g0294921 27.767 497 297 15 1 460 155 626 5.11e-41 155
Msa1272120 MtrunA17_Chr7g0243681 38.462 273 135 9 207 460 217 475 5.22e-41 153
Msa1272120 MtrunA17_Chr7g0250001 26.722 479 298 15 1 461 1 444 5.83e-41 152
Msa1272120 MtrunA17_Chr6g0454121 30.968 310 170 9 161 460 199 474 5.89e-41 152
Msa1272120 MtrunA17_Chr7g0243871 38.202 267 139 9 207 460 215 468 6.14e-41 152
Msa1272120 MtrunA17_Chr7g0218791 27.928 444 274 12 6 433 5 418 8.56e-41 151
Msa1272120 MtrunA17_Chr1g0207831 30.716 433 223 18 65 460 67 459 8.66e-41 152
Msa1272120 MtrunA17_Chr1g0207931 35.273 275 143 9 202 460 238 493 1.14e-40 152
Msa1272120 MtrunA17_Chr4g0060511 37.050 278 137 9 207 460 220 483 1.27e-40 152
Msa1272120 MtrunA17_Chr5g0419771 27.723 505 287 17 4 460 34 508 1.57e-40 152
Msa1272120 MtrunA17_Chr7g0243771 35.370 311 168 9 169 460 175 471 1.70e-40 151
Msa1272120 MtrunA17_Chr4g0032331 31.755 359 214 11 111 461 111 446 2.34e-40 150
Msa1272120 MtrunA17_Chr7g0218831 26.338 467 279 13 6 448 6 431 2.56e-40 150
Msa1272120 MtrunA17_Chr6g0454131 27.083 384 240 9 98 460 110 474 2.72e-40 150
Msa1272120 MtrunA17_Chr4g0066281 28.859 447 257 17 46 460 45 462 3.12e-40 150
Msa1272120 MtrunA17_Chr4g0044501 30.366 382 234 11 96 460 105 471 3.26e-40 150
Msa1272120 MtrunA17_Chr7g0243781 36.218 312 161 10 169 460 178 471 3.67e-40 150
Msa1272120 MtrunA17_Chr3g0122001 28.131 487 305 15 1 460 1 469 4.01e-40 154
Msa1272120 MtrunA17_Chr3g0122001 27.686 484 310 13 1 460 481 948 6.12e-40 153
Msa1272120 MtrunA17_Chr3g0098111 29.630 378 225 12 108 466 116 471 4.55e-40 150
Msa1272120 MtrunA17_Chr8g0377941 28.074 488 281 17 5 460 8 457 5.42e-40 150
Msa1272120 MtrunA17_Chr7g0249961 36.408 206 114 2 255 460 67 255 6.73e-40 144
Msa1272120 MtrunA17_Chr8g0367221 28.661 478 289 14 2 454 794 1244 7.51e-40 153
Msa1272120 MtrunA17_Chr8g0367221 38.916 203 113 2 248 450 1539 1730 2.55e-36 143
Msa1272120 MtrunA17_Chr8g0367221 36.957 230 133 4 234 461 245 464 1.15e-35 141
Msa1272120 MtrunA17_Chr8g0369341 27.696 473 309 10 6 460 7 464 1.03e-39 149
Msa1272120 MtrunA17_Chr8g0374901 32.975 279 161 8 199 457 199 471 1.08e-39 149
Msa1272120 MtrunA17_Chr3g0121991 27.198 489 300 14 1 457 74 538 1.20e-39 150
Msa1272120 MtrunA17_Chr8g0374931 26.955 486 301 14 1 453 6 470 1.62e-39 149
Msa1272120 MtrunA17_Chr5g0428081 26.639 488 312 16 1 460 6 475 1.90e-39 148
Msa1272120 MtrunA17_Chr1g0207971 32.927 328 160 11 150 460 165 449 2.09e-39 148
Msa1272120 MtrunA17_Chr4g0042931 27.642 492 304 17 2 468 3 467 2.20e-39 148
Msa1272120 MtrunA17_Chr6g0482061 26.122 490 312 14 6 465 11 480 2.41e-39 148
Msa1272120 MtrunA17_Chr4g0044481 37.963 216 111 5 195 401 196 397 2.92e-39 147
Msa1272120 MtrunA17_Chr2g0307961 27.893 484 288 16 6 460 13 464 3.96e-39 147
Msa1272120 MtrunA17_Chr1g0207951 31.481 324 169 8 150 460 283 566 4.08e-39 151
Msa1272120 MtrunA17_Chr1g0207951 30.239 377 208 12 106 460 761 1104 4.58e-37 145
Msa1272120 MtrunA17_Chr7g0218311 27.767 497 294 18 1 460 11 479 4.57e-39 147
Msa1272120 MtrunA17_Chr5g0431401 27.061 473 289 13 6 460 10 444 5.35e-39 146
Msa1272120 MtrunA17_Chr6g0454171 32.734 278 144 8 194 460 60 305 5.67e-39 143
Msa1272120 MtrunA17_Chr8g0355221 37.162 296 152 10 187 460 199 482 5.86e-39 147
Msa1272120 MtrunA17_Chr4g0066171 25.205 488 306 13 1 460 16 472 6.41e-39 147
Msa1272120 MtrunA17_Chr4g0072771 28.330 473 291 17 3 460 22 461 6.82e-39 146
Msa1272120 MtrunA17_Chr8g0374971 31.752 274 161 7 207 460 209 476 1.75e-38 146
Msa1272120 MtrunA17_Chr7g0218811 33.210 271 153 7 192 460 201 445 1.77e-38 145
Msa1272120 MtrunA17_Chr5g0401721 25.984 508 282 22 2 460 4 466 2.08e-38 145
Msa1272120 MtrunA17_Chr8g0334841 48.734 158 74 4 169 321 1 156 2.93e-38 137
Msa1272120 MtrunA17_Chr7g0235051 38.321 274 132 10 207 457 187 446 4.22e-38 144
Msa1272120 MtrunA17_Chr7g0243861 37.906 277 136 9 207 460 220 483 4.58e-38 145
Msa1272120 MtrunA17_Chr8g0374941 32.042 284 167 8 194 457 1133 1410 1.01e-37 147
Msa1272120 MtrunA17_Chr8g0374941 33.209 268 153 8 199 446 665 926 1.12e-36 144
Msa1272120 MtrunA17_Chr8g0374941 31.868 273 160 8 194 446 195 461 6.52e-36 142
Msa1272120 MtrunA17_Chr8g0350881 31.707 287 170 7 194 460 196 476 1.22e-37 143
Msa1272120 MtrunA17_Chr8g0365811 28.989 376 226 12 106 460 598 953 1.29e-37 146
Msa1272120 MtrunA17_Chr8g0365811 34.263 251 135 8 195 431 205 439 7.81e-33 132
Msa1272120 MtrunA17_Chr6g0463851 30.976 297 176 9 194 467 198 488 1.51e-37 143
Msa1272120 MtrunA17_Chr7g0243851 32.620 374 203 13 118 460 83 438 1.87e-37 142
Msa1272120 MtrunA17_Chr1g0207861 28.745 494 296 18 2 466 4 470 1.95e-37 143
Msa1272120 MtrunA17_Chr5g0412111 27.893 484 295 19 3 460 2 457 2.80e-37 142
Msa1272120 MtrunA17_Chr7g0243951 37.184 277 137 10 207 460 217 479 3.85e-37 142
Msa1272120 MtrunA17_Chr8g0355011 27.676 383 207 11 95 463 34 360 4.77e-37 139
Msa1272120 MtrunA17_Chr2g0294941 33.088 272 157 8 194 446 96 361 5.85e-37 139
Msa1272120 MtrunA17_Chr5g0393591 29.771 393 208 17 73 453 88 424 6.77e-37 141
Msa1272120 MtrunA17_Chr5g0431361 27.158 475 285 14 6 458 12 447 8.68e-37 140
Msa1272120 MtrunA17_Chr1g0165701 39.381 226 112 5 246 460 268 479 9.38e-37 141
Msa1272120 MtrunA17_Chr3g0118751 25.709 494 279 14 1 460 1 440 1.00e-36 140
Msa1272120 MtrunA17_Chr2g0294931 32.168 286 169 8 194 460 198 477 1.03e-36 141
Msa1272120 MtrunA17_Chr1g0161351 27.721 487 292 17 5 460 36 493 2.16e-36 140
Msa1272120 MtrunA17_Chr7g0243761 37.597 258 130 9 207 448 217 459 2.20e-36 139
Msa1272120 MtrunA17_Chr7g0243911 40.488 205 99 5 257 449 22 215 3.44e-36 133
Msa1272120 MtrunA17_Chr6g0454351 28.533 368 218 11 108 460 123 460 5.67e-36 138
Msa1272120 MtrunA17_Chr7g0243711 36.992 246 122 6 237 460 78 312 5.71e-36 135
Msa1272120 MtrunA17_Chr2g0278721 29.847 459 280 16 3 439 514 952 6.23e-36 141
Msa1272120 MtrunA17_Chr2g0278721 26.940 464 290 13 3 445 12 447 3.11e-32 130
Msa1272120 MtrunA17_Chr7g0218821 27.809 356 220 10 93 439 101 428 7.39e-36 138
Msa1272120 MtrunA17_Chr8g0336321 30.217 460 275 19 2 438 3 439 1.14e-35 137
Msa1272120 MtrunA17_Chr5g0410941 26.186 485 316 16 1 460 18 485 1.37e-35 138
Msa1272120 MtrunA17_Chr5g0431371 26.625 477 288 13 2 457 6 441 5.81e-35 135
Msa1272120 MtrunA17_Chr7g0241781 28.821 458 246 19 3 439 6 404 5.86e-35 135
Msa1272120 MtrunA17_Chr5g0431421 25.417 480 288 13 6 460 10 444 5.87e-35 135
Msa1272120 MtrunA17_Chr8g0336251 29.783 460 277 19 2 438 3 439 7.62e-35 135
Msa1272120 MtrunA17_Chr7g0243611 40.265 226 106 8 207 416 78 290 1.30e-34 131
Msa1272120 MtrunA17_Chr6g0466831 27.391 460 288 15 3 445 15 445 3.71e-34 133
Msa1272120 MtrunA17_Chr5g0416741 27.941 408 229 14 89 460 101 479 1.08e-33 132
Msa1272120 MtrunA17_Chr7g0265111 26.148 501 298 18 5 460 38 511 1.25e-33 133
Msa1272120 MtrunA17_Chr5g0401851 27.833 503 288 21 10 467 14 486 2.28e-33 131
Msa1272120 MtrunA17_Chr5g0448551 32.047 337 185 11 112 432 110 418 4.43e-33 130
Msa1272120 MtrunA17_Chr3g0106231 25.793 473 284 14 6 457 18 444 4.49e-33 130
Msa1272120 MtrunA17_Chr4g0029151 28.696 460 271 19 5 441 19 444 6.31e-33 130
Msa1272120 MtrunA17_Chr6g0466841 26.464 461 291 15 3 445 15 445 1.27e-32 129
Msa1272120 MtrunA17_Chr7g0243811 42.718 206 99 7 207 406 190 382 1.96e-32 127
Msa1272120 MtrunA17_Chr4g0029131 28.009 457 278 19 5 441 11 436 2.34e-32 130
Msa1272120 MtrunA17_Chr5g0432731 30.537 298 170 8 169 453 12 285 2.37e-32 125
Msa1272120 MtrunA17_Chr5g0412101 28.533 368 222 12 100 446 106 453 2.61e-32 128
Msa1272120 MtrunA17_Chr6g0454371 35.714 182 101 4 279 460 1 166 1.87e-31 119
Msa1272120 MtrunA17_Chr6g0463891 28.831 385 210 15 112 460 124 480 2.21e-31 126
Msa1272120 MtrunA17_Chr7g0241801 29.039 458 245 20 3 439 6 404 2.64e-31 125
Msa1272120 MtrunA17_Chr5g0409591 35.885 209 118 3 255 449 273 479 3.38e-31 125
Msa1272120 MtrunA17_Chr4g0069611 26.237 465 275 13 3 439 12 436 3.87e-31 125
Msa1272120 MtrunA17_Chr5g0427571 41.989 181 92 5 259 438 105 273 4.98e-31 121
Msa1272120 MtrunA17_Chr2g0278741 25.602 457 305 13 3 445 94 529 5.13e-31 125
Msa1272120 MtrunA17_Chr5g0412131 27.409 467 287 19 6 446 12 452 2.31e-30 122
Msa1272120 MtrunA17_Chr3g0092031 34.197 193 112 4 254 445 1 179 5.37e-30 115
Msa1272120 MtrunA17_Chr6g0454251 26.555 418 240 15 2 378 3 394 1.16e-29 119
Msa1272120 MtrunA17_Chr4g0039881 34.762 210 120 5 239 445 224 419 1.50e-29 120
Msa1272120 MtrunA17_Chr6g0464091 26.667 465 294 17 2 445 14 452 5.46e-29 119
Msa1272120 MtrunA17_Chr3g0106251 31.783 258 145 7 208 457 52 286 6.60e-29 115
Msa1272120 MtrunA17_Chr2g0302851 34.171 199 118 2 241 439 252 437 1.98e-28 117
Msa1272120 MtrunA17_Chr1g0196851 29.167 456 271 19 2 435 45 470 5.75e-28 116
Msa1272120 MtrunA17_Chr8g0357361 34.328 201 112 5 207 401 63 249 4.62e-27 109
Msa1272120 MtrunA17_Chr2g0283041 26.501 483 277 16 5 450 6 447 1.37e-26 112
Msa1272120 MtrunA17_Chr8g0336261 36.913 149 78 3 279 427 1 133 1.41e-26 104
Msa1272120 MtrunA17_Chr2g0319761 28.166 458 279 17 5 441 7 435 3.45e-26 110
Msa1272120 MtrunA17_Chr2g0319731 28.821 458 276 18 4 440 23 451 9.62e-26 109
Msa1272120 MtrunA17_Chr8g0337371 69.014 71 22 0 199 269 392 462 1.53e-25 110
Msa1272120 MtrunA17_Chr4g0040691 32.870 216 126 4 231 441 234 435 3.66e-25 107
Msa1272120 MtrunA17_Chr7g0231631 30.627 271 147 9 207 460 9 255 4.59e-25 104
Msa1272120 MtrunA17_Chr5g0416821 30.627 271 149 9 207 460 221 469 5.60e-25 107
Msa1272120 MtrunA17_Chr5g0431431 30.303 297 158 12 136 420 84 343 5.76e-25 105
Msa1272120 MtrunA17_Chr6g0449971 58.228 79 33 0 389 467 2 80 6.31e-25 98.2
Msa1272120 MtrunA17_Chr2g0319801 27.511 458 282 16 4 440 6 434 1.25e-24 106
Msa1272120 MtrunA17_Chr6g0454231 29.699 266 119 9 206 460 6 214 1.49e-24 106
Msa1272120 MtrunA17_Chr4g0066141 38.667 150 80 4 323 460 198 347 3.60e-24 103
Msa1272120 MtrunA17_Chr5g0442501 24.919 309 221 7 3 305 2 305 1.79e-21 94.7
Msa1272120 MtrunA17_Chr4g0040711 31.183 186 116 2 258 441 260 435 2.23e-21 96.7
Msa1272120 MtrunA17_Chr3g0079721 27.225 191 130 3 95 277 99 288 2.27e-20 91.3
Msa1272120 MtrunA17_Chr2g0319791 25.373 469 276 17 5 440 7 434 3.49e-20 92.8
Msa1272120 MtrunA17_Chr2g0321331 33.898 177 89 5 267 441 94 244 3.64e-20 90.1
Msa1272120 MtrunA17_Chr1g0207881 38.806 134 73 4 332 460 251 380 4.26e-20 92.0
Msa1272120 MtrunA17_Chr5g0442551 27.481 262 163 7 95 348 52 294 1.48e-19 89.0
Msa1272120 MtrunA17_Chr4g0029161 25.821 457 260 21 5 441 11 408 2.08e-19 90.5
Msa1272120 MtrunA17_Chr2g0319751 27.473 455 284 18 5 440 484 911 9.97e-19 89.4
Msa1272120 MtrunA17_Chr2g0319751 26.030 461 259 21 5 440 7 410 5.12e-16 80.9
Msa1272120 MtrunA17_Chr7g0243731 46.753 77 41 0 332 408 2 78 1.26e-18 80.5
Msa1272120 MtrunA17_Chr6g0469961 36.429 140 79 3 168 299 27 164 2.11e-17 79.7
Msa1272120 MtrunA17_Chr8g0339611 40.000 130 73 2 1 127 1 128 3.18e-17 77.8
Msa1272120 MtrunA17_Chr7g0250021 26.769 325 201 12 3 308 9 315 2.57e-16 80.1
Msa1272120 MtrunA17_Chr6g0453981 29.932 147 88 4 169 303 61 204 9.33e-14 70.9
Msa1272120 MtrunA17_Chr6g0454391 68.571 35 11 0 355 389 13 47 2.45e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272120 AT4G01070.1 50.215 466 227 4 3 465 5 468 4.46e-165 474
Msa1272120 AT1G01420.2 46.452 465 243 5 4 465 9 470 1.91e-152 442
Msa1272120 AT1G01420.1 46.352 466 244 5 3 465 5 467 3.02e-152 442
Msa1272120 AT1G01390.1 45.161 465 252 3 3 465 5 468 8.81e-147 428
Msa1272120 AT1G01390.2 45.259 464 251 3 4 465 23 485 1.57e-146 428
Msa1272120 AT4G01070.2 45.376 346 182 5 3 345 5 346 4.58e-99 301
Msa1272120 AT3G50740.1 36.743 479 265 13 6 461 7 470 1.02e-93 292
Msa1272120 AT2G18570.1 36.887 469 277 13 6 463 5 465 1.22e-89 281
Msa1272120 AT4G36770.1 38.013 463 246 14 5 446 3 445 2.62e-87 275
Msa1272120 AT5G66690.1 36.170 470 252 13 6 451 7 452 1.63e-86 273
Msa1272120 AT5G26310.1 35.841 452 264 10 6 444 7 445 3.49e-84 267
Msa1272120 AT2G18560.1 39.842 379 208 9 95 463 7 375 1.03e-80 255
Msa1272120 AT3G16520.3 35.450 378 231 7 89 464 93 459 2.31e-78 252
Msa1272120 AT3G16520.2 35.556 360 219 7 89 446 93 441 5.40e-75 243
Msa1272120 AT3G16520.1 35.556 360 219 7 89 446 93 441 8.76e-75 242
Msa1272120 AT3G21750.1 30.928 485 283 15 5 460 3 464 2.66e-64 215
Msa1272120 AT2G29740.1 31.933 476 278 16 10 460 16 470 2.75e-62 210
Msa1272120 AT1G07260.1 36.538 364 201 12 110 460 121 467 5.46e-62 209
Msa1272120 AT1G07250.1 29.897 485 298 16 1 460 1 468 3.96e-60 204
Msa1272120 AT4G15280.1 30.864 486 287 15 5 460 3 469 5.30e-60 204
Msa1272120 AT4G15280.2 30.864 486 287 15 5 460 35 501 9.61e-60 204
Msa1272120 AT3G21800.1 34.309 376 203 11 109 457 110 468 1.08e-59 203
Msa1272120 AT3G21790.1 34.225 374 207 11 111 460 116 474 4.11e-59 202
Msa1272120 AT2G29750.1 30.435 483 295 17 2 460 4 469 4.54e-59 202
Msa1272120 AT4G15260.1 34.239 368 199 12 117 460 2 350 3.03e-58 196
Msa1272120 AT2G29730.1 29.897 485 285 15 3 460 2 458 1.13e-57 197
Msa1272120 AT2G29710.1 29.668 482 290 15 3 460 2 458 6.38e-57 196
Msa1272120 AT2G16890.2 31.183 465 271 15 6 446 9 448 1.05e-56 195
Msa1272120 AT2G31750.1 32.059 471 260 16 17 463 19 453 3.48e-56 193
Msa1272120 AT2G31750.2 31.144 472 263 17 17 463 19 453 5.54e-56 194
Msa1272120 AT1G07240.1 30.561 481 292 14 3 456 2 467 1.77e-55 192
Msa1272120 AT3G21780.1 31.148 488 278 17 5 460 3 464 2.34e-55 192
Msa1272120 AT5G14860.1 30.328 488 283 17 6 460 8 471 6.77e-55 191
Msa1272120 AT3G21760.1 30.266 489 287 16 5 457 3 473 1.42e-54 190
Msa1272120 AT4G34131.1 28.313 498 288 12 3 460 7 475 2.51e-53 186
Msa1272120 AT1G05675.1 29.707 478 288 14 1 460 1 448 3.01e-52 183
Msa1272120 AT2G15480.1 28.425 489 296 10 5 460 9 476 3.36e-52 183
Msa1272120 AT1G10400.1 30.408 490 274 19 3 460 4 458 3.13e-51 180
Msa1272120 AT2G15480.2 28.457 499 293 12 5 460 9 486 8.08e-51 180
Msa1272120 AT2G15490.1 29.039 489 296 13 5 460 6 476 9.65e-51 179
Msa1272120 AT2G15490.3 29.039 489 293 13 5 460 6 473 2.23e-50 178
Msa1272120 AT5G12890.1 29.979 487 296 14 3 460 7 477 1.60e-49 176
Msa1272120 AT3G53160.1 30.769 494 282 18 5 460 7 478 7.65e-49 174
Msa1272120 AT2G43820.1 27.975 479 278 12 3 457 4 439 1.06e-48 173
Msa1272120 AT1G05680.1 28.750 480 292 12 1 461 1 449 2.00e-48 172
Msa1272120 AT1G22340.1 28.340 494 292 17 6 463 13 480 2.26e-48 173
Msa1272120 AT2G36770.1 37.063 286 150 6 194 460 210 484 6.64e-48 172
Msa1272120 AT2G16890.3 30.115 435 258 14 6 419 9 418 8.56e-48 170
Msa1272120 AT4G34138.1 35.955 267 143 6 207 460 223 474 8.82e-48 172
Msa1272120 AT2G31790.1 28.954 373 224 6 107 460 102 452 1.54e-47 170
Msa1272120 AT1G78270.1 29.053 475 277 14 6 446 13 461 3.47e-47 170
Msa1272120 AT1G22360.1 26.531 490 305 15 6 463 10 476 3.68e-47 170
Msa1272120 AT2G36780.1 36.996 273 142 5 207 460 223 484 1.05e-46 169
Msa1272120 AT1G73880.1 28.931 477 285 16 6 458 14 460 1.79e-46 168
Msa1272120 AT2G43840.1 28.074 488 272 15 6 463 7 445 1.81e-46 167
Msa1272120 AT2G43840.2 28.074 488 272 15 6 463 7 445 2.27e-46 167
Msa1272120 AT2G36760.1 37.453 267 135 6 207 453 223 477 5.47e-46 167
Msa1272120 AT3G46680.1 28.662 471 296 15 1 460 4 445 6.81e-46 166
Msa1272120 AT1G24100.1 28.659 492 266 18 6 460 11 454 9.41e-46 166
Msa1272120 AT2G36800.1 36.996 273 142 5 207 460 222 483 9.90e-46 166
Msa1272120 AT1G05560.1 30.021 473 277 16 6 457 5 444 1.95e-45 165
Msa1272120 AT2G30140.1 28.333 480 276 15 6 461 13 448 2.84e-45 164
Msa1272120 AT2G30140.2 28.662 471 285 14 6 461 13 447 3.12e-45 164
Msa1272120 AT2G36970.1 28.418 373 235 8 108 468 122 474 5.39e-45 164
Msa1272120 AT1G05560.2 30.233 473 276 16 6 457 55 494 5.41e-45 164
Msa1272120 AT1G22380.1 26.747 501 298 16 2 463 9 479 6.79e-45 164
Msa1272120 AT5G05880.1 30.337 356 222 7 111 460 109 444 7.70e-45 163
Msa1272120 AT1G22400.1 27.439 492 301 16 6 464 13 481 8.72e-45 163
Msa1272120 AT4G34135.1 29.466 431 246 14 3 401 8 412 1.60e-44 162
Msa1272120 AT3G53150.1 37.413 286 136 8 207 460 231 505 5.50e-44 162
Msa1272120 AT1G22360.2 26.327 490 294 15 6 463 10 464 1.73e-43 159
Msa1272120 AT2G36750.1 35.897 273 145 6 207 460 218 479 2.06e-43 160
Msa1272120 AT4G15490.1 29.534 386 231 11 98 463 101 465 7.24e-43 158
Msa1272120 AT3G11340.1 28.333 420 260 12 62 460 41 440 8.06e-43 157
Msa1272120 AT5G59590.1 28.387 465 300 14 3 460 7 445 1.36e-42 157
Msa1272120 AT3G46690.1 29.583 480 283 19 1 460 1 445 1.67e-42 156
Msa1272120 AT5G59580.1 31.593 364 223 10 112 468 109 453 1.93e-42 156
Msa1272120 AT1G22370.2 27.475 495 289 17 6 463 13 474 3.62e-42 156
Msa1272120 AT2G30150.2 29.202 476 276 17 6 460 13 448 7.08e-42 155
Msa1272120 AT2G36790.1 35.192 287 156 5 193 460 208 483 5.63e-41 153
Msa1272120 AT5G03490.1 29.072 485 289 16 3 467 16 465 5.89e-41 152
Msa1272120 AT1G22370.1 35.581 267 141 7 194 448 41 288 1.86e-40 147
Msa1272120 AT5G05870.1 29.805 359 225 10 111 461 112 451 1.90e-40 151
Msa1272120 AT2G30150.1 29.237 472 273 17 10 460 1 432 2.07e-40 150
Msa1272120 AT4G15480.1 30.728 371 223 10 108 463 126 477 2.22e-40 151
Msa1272120 AT5G05860.1 35.254 295 173 8 169 461 166 444 2.65e-40 150
Msa1272120 AT5G17050.1 27.564 468 299 10 6 460 12 452 2.95e-40 150
Msa1272120 AT3G55700.1 29.706 340 217 9 124 460 126 446 3.65e-40 150
Msa1272120 AT1G05530.1 36.220 254 144 6 208 453 200 443 4.59e-40 150
Msa1272120 AT2G28080.1 29.132 357 215 11 111 454 129 460 2.16e-39 149
Msa1272120 AT3G46700.1 29.330 358 230 9 109 461 102 441 2.75e-39 147
Msa1272120 AT4G15500.1 30.108 372 227 11 106 463 109 461 5.28e-39 147
Msa1272120 AT4G15550.1 31.092 357 219 11 108 453 122 462 6.23e-39 147
Msa1272120 AT5G65550.1 28.477 453 275 15 5 435 8 433 9.18e-39 146
Msa1272120 AT5G05900.1 30.337 356 215 9 112 460 114 443 1.67e-38 145
Msa1272120 AT3G46660.1 30.748 361 214 12 112 460 115 451 1.75e-38 145
Msa1272120 AT2G23250.1 26.190 462 284 13 17 460 9 431 2.00e-38 145
Msa1272120 AT2G23260.1 30.275 327 191 8 146 457 142 446 3.07e-38 145
Msa1272120 AT1G30530.1 26.419 458 297 12 6 453 12 439 4.92e-38 144
Msa1272120 AT1G51210.1 28.761 452 265 15 6 439 20 432 2.70e-37 142
Msa1272120 AT3G55710.1 31.412 347 210 11 124 461 124 451 6.00e-37 141
Msa1272120 AT3G02100.1 25.780 481 293 14 6 460 13 455 8.25e-37 141
Msa1272120 AT5G38040.1 30.084 359 220 11 111 460 109 445 1.47e-36 140
Msa1272120 AT3G46670.1 26.804 485 294 17 3 467 8 451 2.48e-36 139
Msa1272120 AT3G21560.1 27.387 398 247 11 84 463 98 471 3.95e-36 140
Msa1272120 AT1G06000.1 34.866 261 155 5 207 460 177 429 4.74e-36 138
Msa1272120 AT3G46650.1 27.409 467 289 14 1 460 5 428 6.09e-36 138
Msa1272120 AT5G05890.1 28.409 352 234 5 111 460 113 448 7.20e-36 138
Msa1272120 AT2G26480.1 29.972 357 223 8 112 460 104 441 1.59e-35 137
Msa1272120 AT5G38010.1 29.945 364 218 10 109 460 111 449 1.17e-34 135
Msa1272120 AT2G22590.1 27.719 469 290 19 5 450 14 456 3.40e-34 134
Msa1272120 AT5G17030.1 26.652 469 287 16 6 453 12 444 4.06e-34 134
Msa1272120 AT5G49690.1 28.294 463 273 18 2 441 6 432 7.36e-34 133
Msa1272120 AT4G14090.1 27.273 385 245 11 84 457 88 448 1.02e-33 132
Msa1272120 AT3G46720.1 35.088 228 126 4 234 460 230 436 1.11e-33 132
Msa1272120 AT5G17040.1 27.406 478 263 18 6 453 5 428 1.71e-31 126
Msa1272120 AT5G17040.2 35.354 198 109 3 256 453 148 326 4.17e-31 123
Msa1272120 AT3G22250.1 32.959 267 136 12 190 434 190 435 1.36e-30 124
Msa1272120 AT4G27570.1 26.593 455 288 13 5 445 6 428 2.51e-28 117
Msa1272120 AT1G64910.1 25.597 461 280 13 1 441 1 418 2.53e-28 117
Msa1272120 AT5G53990.1 26.154 455 285 13 1 441 1 418 3.29e-27 114
Msa1272120 AT5G37950.2 31.136 273 165 10 110 378 84 337 6.58e-27 111
Msa1272120 AT4G27560.1 25.934 455 291 13 5 445 6 428 4.46e-26 110
Msa1272120 AT5G54010.1 25.870 460 288 14 1 442 1 425 5.66e-26 110
Msa1272120 AT5G37950.1 29.893 281 164 10 110 378 84 343 1.41e-25 107
Msa1272120 AT3G29630.1 26.374 455 287 14 1 441 1 421 4.77e-25 107
Msa1272120 AT3G29630.2 33.790 219 127 5 228 441 190 395 5.42e-24 104
Msa1272120 AT1G50580.1 23.690 477 320 13 1 466 1 444 8.14e-23 101
Msa1272120 AT2G22930.1 24.229 454 303 11 1 445 1 422 9.53e-23 100
Msa1272120 AT5G54060.1 28.517 263 168 6 194 451 206 453 9.87e-21 95.1
Msa1272120 AT4G09500.2 24.508 457 290 13 1 441 1 418 1.31e-20 94.4
Msa1272120 AT1G64920.1 31.048 248 147 7 206 445 195 426 1.91e-20 94.0
Msa1272120 AT4G09500.1 32.402 179 109 3 265 441 225 393 2.32e-19 90.5
Msa1272120 AT4G34135.2 25.225 333 203 13 3 303 8 326 3.05e-14 74.3

Find 106 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTTGGCGTTTGGATAAT+TGG 0.222898 8_3:+5576233 None:intergenic
TGAGTAATCATAAATTCTTA+TGG 0.245563 8_3:-5576070 Msa1272120:CDS
CTATTTACTCAAGTTGAATA+AGG 0.262859 8_3:-5576507 Msa1272120:CDS
GAGGACACCCTTTGTGGCCT+TGG 0.265854 8_3:-5576633 Msa1272120:CDS
ATGCCATTCTGATTAACTTT+TGG 0.292082 8_3:+5575741 None:intergenic
TGCTATTGAAGCACTAGATT+TGG 0.293950 8_3:-5576597 Msa1272120:CDS
ACAAATTAATGAGTTGGCTT+TGG 0.296705 8_3:-5576102 Msa1272120:CDS
ATTAGCATCATCACCGGATT+TGG 0.304032 8_3:+5576214 None:intergenic
TAATGAGTTGGCTTTGGGTT+TGG 0.311613 8_3:-5576096 Msa1272120:CDS
CACCGGATTTGGTTGGCGTT+TGG 0.314003 8_3:+5576225 None:intergenic
CAAATTAATGAGTTGGCTTT+GGG 0.339481 8_3:-5576101 Msa1272120:CDS
GAGTAATCATAAATTCTTAT+GGG 0.342858 8_3:-5576069 Msa1272120:CDS
CTCTTGGAGAATTGAAGAAT+TGG 0.343043 8_3:+5576890 None:intergenic
AATTCCTTGTGGTAGGTCTT+TGG 0.347577 8_3:+5576733 None:intergenic
TCTTCTGTGAGTGCTTCTAT+AGG 0.359525 8_3:+5576290 None:intergenic
AAAGTACAGCTGATGTTTGA+TGG 0.389406 8_3:+5576773 None:intergenic
AACTTTGAGGACACCCTTTG+TGG 0.391971 8_3:-5576639 Msa1272120:CDS
AGCACTCAAGTGGAGAAATA+TGG 0.399129 8_3:-5575568 Msa1272120:CDS
ATTCATATTGCAGTTGTTCC+AGG 0.400348 8_3:-5576935 Msa1272120:CDS
TCAGAATGGCATTGTGGAAA+AGG 0.409619 8_3:-5575730 Msa1272120:CDS
ACATGCTTCATTCCCTCACT+TGG 0.418118 8_3:-5576836 Msa1272120:CDS
ATCCAAACGCCAACCAAATC+CGG 0.420916 8_3:-5576227 Msa1272120:CDS
AAATCCGGTGATGATGCTAA+TGG 0.422774 8_3:-5576212 Msa1272120:CDS
CCAGGCTGTGTACCAATTCA+TGG 0.427546 8_3:-5576440 Msa1272120:CDS
AGCTTCCTAGAAATTGAAAA+AGG 0.436264 8_3:-5576314 Msa1272120:CDS
AAAGGGTGTCCTCAAAGTTA+AGG 0.440178 8_3:+5576643 None:intergenic
GACAAAGTGGTGACTGAAGC+AGG 0.441238 8_3:+5576539 None:intergenic
AAGCATGTGACATGAAAGTA+TGG 0.442050 8_3:+5576851 None:intergenic
TCTTGGAGAATTGAAGAATT+GGG 0.442083 8_3:+5576891 None:intergenic
ACAAGATCCCGACCATGAAT+TGG 0.442302 8_3:+5576428 None:intergenic
CTATGAAATCCTTAACTTTG+AGG 0.445647 8_3:-5576652 Msa1272120:CDS
GCAAGAACAAATTAATGAGT+TGG 0.450789 8_3:-5576108 Msa1272120:CDS
GGATTTCATAGCCTGATGTA+TGG 0.451703 8_3:+5576664 None:intergenic
ATTGCAGTTGTTCCAGGTGT+TGG 0.453208 8_3:-5576929 Msa1272120:CDS
ACACAGCCTGGTATTTGAAT+AGG 0.456583 8_3:+5576452 None:intergenic
AACCCTGATGTTTATGCTGT+TGG 0.459273 8_3:-5576257 Msa1272120:CDS
GGTCCAACAGCATAAACATC+AGG 0.461123 8_3:+5576254 None:intergenic
GGTTCTTGACTCACTGTGGT+TGG 0.471970 8_3:-5575878 Msa1272120:CDS
ATTGAAGAATTGGGAATAAG+TGG 0.477711 8_3:+5576900 None:intergenic
CCTGGTATTTGAATAGGCTC+TGG 0.480289 8_3:+5576458 None:intergenic
CTGTGTACCAATTCATGGTC+GGG 0.481789 8_3:-5576435 Msa1272120:CDS
GACACCCTTTGTGGCCTTGG+TGG 0.483059 8_3:-5576630 Msa1272120:CDS
AATAGTGCACATAAAGATGA+TGG 0.484942 8_3:-5575618 Msa1272120:CDS
ATGAAGCTGAACAAGTCTCT+TGG 0.486185 8_3:+5576874 None:intergenic
CTCATTACCATCCATACATC+AGG 0.490609 8_3:-5576675 Msa1272120:CDS
CTTCGTCACAGTTCAGTTGG+TGG 0.494250 8_3:-5575900 Msa1272120:CDS
TTCGTCACAGTTCAGTTGGT+GGG 0.494754 8_3:-5575899 Msa1272120:CDS
ATAGAAGCACTCACAGAAGA+AGG 0.495380 8_3:-5576287 Msa1272120:CDS
GCACTCACAGAAGAAGGAAA+TGG 0.510583 8_3:-5576281 Msa1272120:CDS
TGTCTCATGGAAGGGGAAGA+AGG 0.511963 8_3:-5575684 Msa1272120:CDS
AATAGAGGCCATGTGATTAG+TGG 0.513713 8_3:+5575822 None:intergenic
GGTAGGTCTTTGGAGTTGAC+TGG 0.515275 8_3:+5576743 None:intergenic
AAGGGATGGTTATTCCATCA+TGG 0.515871 8_3:-5575941 Msa1272120:CDS
CCATGAATTGGTACACAGCC+TGG 0.516401 8_3:+5576440 None:intergenic
GTTCTCTGCTCAGCAAATAG+AGG 0.518937 8_3:+5575807 None:intergenic
GCTGAGTGAAGGACTAAAAG+TGG 0.535351 8_3:-5575772 Msa1272120:CDS
ATCCTTCGTCACAGTTCAGT+TGG 0.535373 8_3:-5575903 Msa1272120:CDS
AATCCGGTGATGATGCTAAT+GGG 0.539361 8_3:-5576211 Msa1272120:CDS
TTTCTCAATTAGCACTCAAG+TGG 0.540414 8_3:-5575578 Msa1272120:CDS
TCAACCACCAAGGCCACAAA+GGG 0.542080 8_3:+5576626 None:intergenic
TAATCAAGTGTCTCATGGAA+GGG 0.552027 8_3:-5575692 Msa1272120:CDS
AGGCCAAAAGTTAATCAGAA+TGG 0.552909 8_3:-5575744 Msa1272120:CDS
CACCAACTGAACTGTGACGA+AGG 0.554137 8_3:+5575901 None:intergenic
CCAGAGCCTATTCAAATACC+AGG 0.555903 8_3:-5576458 Msa1272120:CDS
GCAGCATTGGCTGTACTACT+TGG 0.556270 8_3:+5576035 None:intergenic
TGAATCTGTGGTGCCCATGA+TGG 0.558805 8_3:+5575927 None:intergenic
TTAATCAAGTGTCTCATGGA+AGG 0.560671 8_3:-5575693 Msa1272120:CDS
GCATCATCACCGGATTTGGT+TGG 0.562598 8_3:+5576218 None:intergenic
TTCATAGCCTGATGTATGGA+TGG 0.565341 8_3:+5576668 None:intergenic
AATCAAGTGTCTCATGGAAG+GGG 0.568762 8_3:-5575691 Msa1272120:CDS
TGCTGAAAGATATGCAGCAT+TGG 0.570963 8_3:+5576022 None:intergenic
TCATGGAAGGGGAAGAAGGT+GGG 0.576595 8_3:-5575680 Msa1272120:CDS
AGGGATGGTTATTCCATCAT+GGG 0.579862 8_3:-5575940 Msa1272120:CDS
AGAGTTAATCAAGTGTCTCA+TGG 0.583880 8_3:-5575697 Msa1272120:CDS
GAGAACAAAGGAACAAGGGA+TGG 0.585761 8_3:-5575955 Msa1272120:CDS
GACATGATCTATCTTGAGCT+AGG 0.593270 8_3:+5576402 None:intergenic
CAACCCATTAGCATCATCAC+CGG 0.596517 8_3:+5576208 None:intergenic
ATCAACCACCAAGGCCACAA+AGG 0.596573 8_3:+5576625 None:intergenic
GCTGTGTACCAATTCATGGT+CGG 0.600639 8_3:-5576436 Msa1272120:CDS
ATAGAAGTATGAAGACAAAG+TGG 0.609041 8_3:+5576526 None:intergenic
CTCATGGAAGGGGAAGAAGG+TGG 0.618223 8_3:-5575681 Msa1272120:CDS
CTGAGTGAAGGACTAAAAGT+GGG 0.620969 8_3:-5575771 Msa1272120:CDS
TGCTGAGCAGAGAACGAATG+CGG 0.621101 8_3:-5575799 Msa1272120:CDS
GTTCTCTCTAAGAACCCAGA+AGG 0.622171 8_3:+5575972 None:intergenic
AGTTAATCAGAATGGCATTG+TGG 0.622926 8_3:-5575736 Msa1272120:CDS
AAGTGGCTATATCCAACACC+TGG 0.623193 8_3:+5576917 None:intergenic
TTAGAGAGAACAAAGGAACA+AGG 0.625423 8_3:-5575960 Msa1272120:CDS
TGAAGCAGGAAAGTAAACAT+AGG 0.627209 8_3:+5576553 None:intergenic
TGTTTGATGGAAGAGTTTGA+AGG 0.628221 8_3:+5576786 None:intergenic
CTAAAGCAATTCCTTGTGGT+AGG 0.631977 8_3:+5576726 None:intergenic
ACGCTTGAGAGTGTGTTGCA+TGG 0.636181 8_3:-5575849 Msa1272120:CDS
GTTGAAGTGTCTGACATGGT+TGG 0.640715 8_3:-5576189 Msa1272120:CDS
TAGAGAGAACAAAGGAACAA+GGG 0.641990 8_3:-5575959 Msa1272120:CDS
AGTTGGGAGAGAACCAAGTG+AGG 0.646117 8_3:+5576823 None:intergenic
GGTGGGTTCTTGACTCACTG+TGG 0.646555 8_3:-5575882 Msa1272120:CDS
GTCCAACAGCATAAACATCA+GGG 0.649647 8_3:+5576255 None:intergenic
GTTGGGAGAGAACCAAGTGA+GGG 0.650025 8_3:+5576824 None:intergenic
AAGGACTAAAAGTGGGACTG+AGG 0.651473 8_3:-5575764 Msa1272120:CDS
GAAACATACAAAACTGAACA+AGG 0.662072 8_3:+5576155 None:intergenic
AGAGCTAAAGCAATTCCTTG+TGG 0.662321 8_3:+5576722 None:intergenic
TGGGTTCTTAGAGAGAACAA+AGG 0.676876 8_3:-5575967 Msa1272120:CDS
ATGGGTTGAAGTGTCTGACA+TGG 0.682760 8_3:-5576193 Msa1272120:CDS
AGCAAAAGAATCAACCACCA+AGG 0.684945 8_3:+5576616 None:intergenic
TGACGAAGGATTTGAATCTG+TGG 0.698330 8_3:+5575915 None:intergenic
AACTCCAAAGACCTACCACA+AGG 0.704912 8_3:-5576737 Msa1272120:CDS
ATGGTGTGCCACTAATCACA+TGG 0.720690 8_3:-5575830 Msa1272120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAGTAATCATAAATTCTTA+TGG - chr8_3:5576440-5576459 Msa1272120:CDS 20.0%
!! GAGTAATCATAAATTCTTAT+GGG - chr8_3:5576441-5576460 Msa1272120:CDS 20.0%
!! TGAGTAATCATAAATTCTTA+TGG - chr8_3:5576440-5576459 Msa1272120:CDS 20.0%
!! GAGTAATCATAAATTCTTAT+GGG - chr8_3:5576441-5576460 Msa1272120:CDS 20.0%
!!! CTATTTACTCAAGTTGAATA+AGG - chr8_3:5576003-5576022 Msa1272120:CDS 25.0%
! TAAGAATACCATCAAAAAGA+CGG + chr8_3:5576171-5576190 None:intergenic 25.0%
!!! TCAGTTTTGTATGTTTCTTT+TGG - chr8_3:5576361-5576380 Msa1272120:CDS 25.0%
!!! CAGTTTTGTATGTTTCTTTT+GGG - chr8_3:5576362-5576381 Msa1272120:CDS 25.0%
! CAGAAGGTAAAAATTGTAAA+GGG + chr8_3:5576525-5576544 None:intergenic 25.0%
!! CTTTACAATTTTTACCTTCT+GGG - chr8_3:5576524-5576543 Msa1272120:CDS 25.0%
!!! CTATTTACTCAAGTTGAATA+AGG - chr8_3:5576003-5576022 Msa1272120:CDS 25.0%
! TAAGAATACCATCAAAAAGA+CGG + chr8_3:5576171-5576190 None:intergenic 25.0%
!!! TCAGTTTTGTATGTTTCTTT+TGG - chr8_3:5576361-5576380 Msa1272120:CDS 25.0%
!!! CAGTTTTGTATGTTTCTTTT+GGG - chr8_3:5576362-5576381 Msa1272120:CDS 25.0%
! CAGAAGGTAAAAATTGTAAA+GGG + chr8_3:5576525-5576544 None:intergenic 25.0%
!! CTTTACAATTTTTACCTTCT+GGG - chr8_3:5576524-5576543 Msa1272120:CDS 25.0%
ATTGAAGAATTGGGAATAAG+TGG + chr8_3:5575613-5575632 None:intergenic 30.0%
TCTTGGAGAATTGAAGAATT+GGG + chr8_3:5575622-5575641 None:intergenic 30.0%
!!! GGATTGTTTTTGAATCAGTT+GGG + chr8_3:5575706-5575725 None:intergenic 30.0%
!!! AGGATTGTTTTTGAATCAGT+TGG + chr8_3:5575707-5575726 None:intergenic 30.0%
CTATGAAATCCTTAACTTTG+AGG - chr8_3:5575858-5575877 Msa1272120:CDS 30.0%
! ATAGAAGTATGAAGACAAAG+TGG + chr8_3:5575987-5576006 None:intergenic 30.0%
! GAAAAATTCCGTCTTTTTGA+TGG - chr8_3:5576160-5576179 Msa1272120:CDS 30.0%
AGCTTCCTAGAAATTGAAAA+AGG - chr8_3:5576196-5576215 Msa1272120:CDS 30.0%
!!! TAGGACCTTTTTCAATTTCT+AGG + chr8_3:5576204-5576223 None:intergenic 30.0%
GAAACATACAAAACTGAACA+AGG + chr8_3:5576358-5576377 None:intergenic 30.0%
GCAAGAACAAATTAATGAGT+TGG - chr8_3:5576402-5576421 Msa1272120:CDS 30.0%
! ACAAATTAATGAGTTGGCTT+TGG - chr8_3:5576408-5576427 Msa1272120:CDS 30.0%
!! CAAATTAATGAGTTGGCTTT+GGG - chr8_3:5576409-5576428 Msa1272120:CDS 30.0%
CCAGAAGGTAAAAATTGTAA+AGG + chr8_3:5576526-5576545 None:intergenic 30.0%
! CCTTTACAATTTTTACCTTC+TGG - chr8_3:5576523-5576542 Msa1272120:CDS 30.0%
! ATGCCATTCTGATTAACTTT+TGG + chr8_3:5576772-5576791 None:intergenic 30.0%
AATAGTGCACATAAAGATGA+TGG - chr8_3:5576892-5576911 Msa1272120:CDS 30.0%
ATTGAAGAATTGGGAATAAG+TGG + chr8_3:5575613-5575632 None:intergenic 30.0%
TCTTGGAGAATTGAAGAATT+GGG + chr8_3:5575622-5575641 None:intergenic 30.0%
!!! GGATTGTTTTTGAATCAGTT+GGG + chr8_3:5575706-5575725 None:intergenic 30.0%
!!! AGGATTGTTTTTGAATCAGT+TGG + chr8_3:5575707-5575726 None:intergenic 30.0%
CTATGAAATCCTTAACTTTG+AGG - chr8_3:5575858-5575877 Msa1272120:CDS 30.0%
! ATAGAAGTATGAAGACAAAG+TGG + chr8_3:5575987-5576006 None:intergenic 30.0%
! GAAAAATTCCGTCTTTTTGA+TGG - chr8_3:5576160-5576179 Msa1272120:CDS 30.0%
AGCTTCCTAGAAATTGAAAA+AGG - chr8_3:5576196-5576215 Msa1272120:CDS 30.0%
!!! TAGGACCTTTTTCAATTTCT+AGG + chr8_3:5576204-5576223 None:intergenic 30.0%
GAAACATACAAAACTGAACA+AGG + chr8_3:5576358-5576377 None:intergenic 30.0%
GCAAGAACAAATTAATGAGT+TGG - chr8_3:5576402-5576421 Msa1272120:CDS 30.0%
! ACAAATTAATGAGTTGGCTT+TGG - chr8_3:5576408-5576427 Msa1272120:CDS 30.0%
!! CAAATTAATGAGTTGGCTTT+GGG - chr8_3:5576409-5576428 Msa1272120:CDS 30.0%
CCAGAAGGTAAAAATTGTAA+AGG + chr8_3:5576526-5576545 None:intergenic 30.0%
! CCTTTACAATTTTTACCTTC+TGG - chr8_3:5576523-5576542 Msa1272120:CDS 30.0%
! ATGCCATTCTGATTAACTTT+TGG + chr8_3:5576772-5576791 None:intergenic 30.0%
AATAGTGCACATAAAGATGA+TGG - chr8_3:5576892-5576911 Msa1272120:CDS 30.0%
ATTCATATTGCAGTTGTTCC+AGG - chr8_3:5575575-5575594 Msa1272120:CDS 35.0%
CTCTTGGAGAATTGAAGAAT+TGG + chr8_3:5575623-5575642 None:intergenic 35.0%
AAGCATGTGACATGAAAGTA+TGG + chr8_3:5575662-5575681 None:intergenic 35.0%
TGTTTGATGGAAGAGTTTGA+AGG + chr8_3:5575727-5575746 None:intergenic 35.0%
AAAGTACAGCTGATGTTTGA+TGG + chr8_3:5575740-5575759 None:intergenic 35.0%
! TGCTATTGAAGCACTAGATT+TGG - chr8_3:5575913-5575932 Msa1272120:CDS 35.0%
TGAAGCAGGAAAGTAAACAT+AGG + chr8_3:5575960-5575979 None:intergenic 35.0%
!! TTGTATGTTTCTTTTGGGAG+TGG - chr8_3:5576367-5576386 Msa1272120:CDS 35.0%
TTAGAGAGAACAAAGGAACA+AGG - chr8_3:5576550-5576569 Msa1272120:CDS 35.0%
TAGAGAGAACAAAGGAACAA+GGG - chr8_3:5576551-5576570 Msa1272120:CDS 35.0%
AGGCCAAAAGTTAATCAGAA+TGG - chr8_3:5576766-5576785 Msa1272120:CDS 35.0%
AGTTAATCAGAATGGCATTG+TGG - chr8_3:5576774-5576793 Msa1272120:CDS 35.0%
AGAGTTAATCAAGTGTCTCA+TGG - chr8_3:5576813-5576832 Msa1272120:CDS 35.0%
TTAATCAAGTGTCTCATGGA+AGG - chr8_3:5576817-5576836 Msa1272120:CDS 35.0%
TAATCAAGTGTCTCATGGAA+GGG - chr8_3:5576818-5576837 Msa1272120:CDS 35.0%
GAAACTGCGCAAAAATATGA+AGG - chr8_3:5576852-5576871 Msa1272120:CDS 35.0%
TTTCTCAATTAGCACTCAAG+TGG - chr8_3:5576932-5576951 Msa1272120:CDS 35.0%
ATTCATATTGCAGTTGTTCC+AGG - chr8_3:5575575-5575594 Msa1272120:CDS 35.0%
CTCTTGGAGAATTGAAGAAT+TGG + chr8_3:5575623-5575642 None:intergenic 35.0%
AAGCATGTGACATGAAAGTA+TGG + chr8_3:5575662-5575681 None:intergenic 35.0%
TGTTTGATGGAAGAGTTTGA+AGG + chr8_3:5575727-5575746 None:intergenic 35.0%
AAAGTACAGCTGATGTTTGA+TGG + chr8_3:5575740-5575759 None:intergenic 35.0%
! TGCTATTGAAGCACTAGATT+TGG - chr8_3:5575913-5575932 Msa1272120:CDS 35.0%
TGAAGCAGGAAAGTAAACAT+AGG + chr8_3:5575960-5575979 None:intergenic 35.0%
!! TTGTATGTTTCTTTTGGGAG+TGG - chr8_3:5576367-5576386 Msa1272120:CDS 35.0%
TTAGAGAGAACAAAGGAACA+AGG - chr8_3:5576550-5576569 Msa1272120:CDS 35.0%
TAGAGAGAACAAAGGAACAA+GGG - chr8_3:5576551-5576570 Msa1272120:CDS 35.0%
AGGCCAAAAGTTAATCAGAA+TGG - chr8_3:5576766-5576785 Msa1272120:CDS 35.0%
AGTTAATCAGAATGGCATTG+TGG - chr8_3:5576774-5576793 Msa1272120:CDS 35.0%
AGAGTTAATCAAGTGTCTCA+TGG - chr8_3:5576813-5576832 Msa1272120:CDS 35.0%
TTAATCAAGTGTCTCATGGA+AGG - chr8_3:5576817-5576836 Msa1272120:CDS 35.0%
TAATCAAGTGTCTCATGGAA+GGG - chr8_3:5576818-5576837 Msa1272120:CDS 35.0%
GAAACTGCGCAAAAATATGA+AGG - chr8_3:5576852-5576871 Msa1272120:CDS 35.0%
TTTCTCAATTAGCACTCAAG+TGG - chr8_3:5576932-5576951 Msa1272120:CDS 35.0%
ATGAAGCTGAACAAGTCTCT+TGG + chr8_3:5575639-5575658 None:intergenic 40.0%
AATTCCTTGTGGTAGGTCTT+TGG + chr8_3:5575780-5575799 None:intergenic 40.0%
CTAAAGCAATTCCTTGTGGT+AGG + chr8_3:5575787-5575806 None:intergenic 40.0%
AGAGCTAAAGCAATTCCTTG+TGG + chr8_3:5575791-5575810 None:intergenic 40.0%
CTCATTACCATCCATACATC+AGG - chr8_3:5575835-5575854 Msa1272120:CDS 40.0%
TTCATAGCCTGATGTATGGA+TGG + chr8_3:5575845-5575864 None:intergenic 40.0%
GGATTTCATAGCCTGATGTA+TGG + chr8_3:5575849-5575868 None:intergenic 40.0%
!! AAAGGGTGTCCTCAAAGTTA+AGG + chr8_3:5575870-5575889 None:intergenic 40.0%
AGCAAAAGAATCAACCACCA+AGG + chr8_3:5575897-5575916 None:intergenic 40.0%
ACACAGCCTGGTATTTGAAT+AGG + chr8_3:5576061-5576080 None:intergenic 40.0%
GACATGATCTATCTTGAGCT+AGG + chr8_3:5576111-5576130 None:intergenic 40.0%
TCTTCTGTGAGTGCTTCTAT+AGG + chr8_3:5576223-5576242 None:intergenic 40.0%
!! ATAGAAGCACTCACAGAAGA+AGG - chr8_3:5576223-5576242 Msa1272120:CDS 40.0%
AACCCTGATGTTTATGCTGT+TGG - chr8_3:5576253-5576272 Msa1272120:CDS 40.0%
GTCCAACAGCATAAACATCA+GGG + chr8_3:5576258-5576277 None:intergenic 40.0%
TTGGTTGGCGTTTGGATAAT+TGG + chr8_3:5576280-5576299 None:intergenic 40.0%
ATTAGCATCATCACCGGATT+TGG + chr8_3:5576299-5576318 None:intergenic 40.0%
! AAATCCGGTGATGATGCTAA+TGG - chr8_3:5576298-5576317 Msa1272120:CDS 40.0%
! AATCCGGTGATGATGCTAAT+GGG - chr8_3:5576299-5576318 Msa1272120:CDS 40.0%
!! TATGTTTCTTTTGGGAGTGG+TGG - chr8_3:5576370-5576389 Msa1272120:CDS 40.0%
!! TAATGAGTTGGCTTTGGGTT+TGG - chr8_3:5576414-5576433 Msa1272120:CDS 40.0%
TGCTGAAAGATATGCAGCAT+TGG + chr8_3:5576491-5576510 None:intergenic 40.0%
TGGGTTCTTAGAGAGAACAA+AGG - chr8_3:5576543-5576562 Msa1272120:CDS 40.0%
AAGGGATGGTTATTCCATCA+TGG - chr8_3:5576569-5576588 Msa1272120:CDS 40.0%
AGGGATGGTTATTCCATCAT+GGG - chr8_3:5576570-5576589 Msa1272120:CDS 40.0%
TGACGAAGGATTTGAATCTG+TGG + chr8_3:5576598-5576617 None:intergenic 40.0%
AATAGAGGCCATGTGATTAG+TGG + chr8_3:5576691-5576710 None:intergenic 40.0%
CTGAGTGAAGGACTAAAAGT+GGG - chr8_3:5576739-5576758 Msa1272120:CDS 40.0%
TCAGAATGGCATTGTGGAAA+AGG - chr8_3:5576780-5576799 Msa1272120:CDS 40.0%
AATCAAGTGTCTCATGGAAG+GGG - chr8_3:5576819-5576838 Msa1272120:CDS 40.0%
AGCACTCAAGTGGAGAAATA+TGG - chr8_3:5576942-5576961 Msa1272120:CDS 40.0%
ATGAAGCTGAACAAGTCTCT+TGG + chr8_3:5575639-5575658 None:intergenic 40.0%
AATTCCTTGTGGTAGGTCTT+TGG + chr8_3:5575780-5575799 None:intergenic 40.0%
CTAAAGCAATTCCTTGTGGT+AGG + chr8_3:5575787-5575806 None:intergenic 40.0%
AGAGCTAAAGCAATTCCTTG+TGG + chr8_3:5575791-5575810 None:intergenic 40.0%
CTCATTACCATCCATACATC+AGG - chr8_3:5575835-5575854 Msa1272120:CDS 40.0%
TTCATAGCCTGATGTATGGA+TGG + chr8_3:5575845-5575864 None:intergenic 40.0%
GGATTTCATAGCCTGATGTA+TGG + chr8_3:5575849-5575868 None:intergenic 40.0%
!! AAAGGGTGTCCTCAAAGTTA+AGG + chr8_3:5575870-5575889 None:intergenic 40.0%
AGCAAAAGAATCAACCACCA+AGG + chr8_3:5575897-5575916 None:intergenic 40.0%
ACACAGCCTGGTATTTGAAT+AGG + chr8_3:5576061-5576080 None:intergenic 40.0%
GACATGATCTATCTTGAGCT+AGG + chr8_3:5576111-5576130 None:intergenic 40.0%
TCTTCTGTGAGTGCTTCTAT+AGG + chr8_3:5576223-5576242 None:intergenic 40.0%
!! ATAGAAGCACTCACAGAAGA+AGG - chr8_3:5576223-5576242 Msa1272120:CDS 40.0%
AACCCTGATGTTTATGCTGT+TGG - chr8_3:5576253-5576272 Msa1272120:CDS 40.0%
GTCCAACAGCATAAACATCA+GGG + chr8_3:5576258-5576277 None:intergenic 40.0%
TTGGTTGGCGTTTGGATAAT+TGG + chr8_3:5576280-5576299 None:intergenic 40.0%
ATTAGCATCATCACCGGATT+TGG + chr8_3:5576299-5576318 None:intergenic 40.0%
! AAATCCGGTGATGATGCTAA+TGG - chr8_3:5576298-5576317 Msa1272120:CDS 40.0%
! AATCCGGTGATGATGCTAAT+GGG - chr8_3:5576299-5576318 Msa1272120:CDS 40.0%
!! TATGTTTCTTTTGGGAGTGG+TGG - chr8_3:5576370-5576389 Msa1272120:CDS 40.0%
!! TAATGAGTTGGCTTTGGGTT+TGG - chr8_3:5576414-5576433 Msa1272120:CDS 40.0%
TGCTGAAAGATATGCAGCAT+TGG + chr8_3:5576491-5576510 None:intergenic 40.0%
TGGGTTCTTAGAGAGAACAA+AGG - chr8_3:5576543-5576562 Msa1272120:CDS 40.0%
AAGGGATGGTTATTCCATCA+TGG - chr8_3:5576569-5576588 Msa1272120:CDS 40.0%
AGGGATGGTTATTCCATCAT+GGG - chr8_3:5576570-5576589 Msa1272120:CDS 40.0%
TGACGAAGGATTTGAATCTG+TGG + chr8_3:5576598-5576617 None:intergenic 40.0%
AATAGAGGCCATGTGATTAG+TGG + chr8_3:5576691-5576710 None:intergenic 40.0%
CTGAGTGAAGGACTAAAAGT+GGG - chr8_3:5576739-5576758 Msa1272120:CDS 40.0%
TCAGAATGGCATTGTGGAAA+AGG - chr8_3:5576780-5576799 Msa1272120:CDS 40.0%
AATCAAGTGTCTCATGGAAG+GGG - chr8_3:5576819-5576838 Msa1272120:CDS 40.0%
AGCACTCAAGTGGAGAAATA+TGG - chr8_3:5576942-5576961 Msa1272120:CDS 40.0%
ATTGCAGTTGTTCCAGGTGT+TGG - chr8_3:5575581-5575600 Msa1272120:CDS 45.0%
AAGTGGCTATATCCAACACC+TGG + chr8_3:5575596-5575615 None:intergenic 45.0%
ACATGCTTCATTCCCTCACT+TGG - chr8_3:5575674-5575693 Msa1272120:CDS 45.0%
AACTCCAAAGACCTACCACA+AGG - chr8_3:5575773-5575792 Msa1272120:CDS 45.0%
! AACTTTGAGGACACCCTTTG+TGG - chr8_3:5575871-5575890 Msa1272120:CDS 45.0%
CCTGGTATTTGAATAGGCTC+TGG + chr8_3:5576055-5576074 None:intergenic 45.0%
CCAGAGCCTATTCAAATACC+AGG - chr8_3:5576052-5576071 Msa1272120:CDS 45.0%
GCTGTGTACCAATTCATGGT+CGG - chr8_3:5576074-5576093 Msa1272120:CDS 45.0%
CTGTGTACCAATTCATGGTC+GGG - chr8_3:5576075-5576094 Msa1272120:CDS 45.0%
ACAAGATCCCGACCATGAAT+TGG + chr8_3:5576085-5576104 None:intergenic 45.0%
GCACTCACAGAAGAAGGAAA+TGG - chr8_3:5576229-5576248 Msa1272120:CDS 45.0%
GGTCCAACAGCATAAACATC+AGG + chr8_3:5576259-5576278 None:intergenic 45.0%
ATCCAAACGCCAACCAAATC+CGG - chr8_3:5576283-5576302 Msa1272120:CDS 45.0%
CAACCCATTAGCATCATCAC+CGG + chr8_3:5576305-5576324 None:intergenic 45.0%
! ATGGGTTGAAGTGTCTGACA+TGG - chr8_3:5576317-5576336 Msa1272120:CDS 45.0%
! GTTGAAGTGTCTGACATGGT+TGG - chr8_3:5576321-5576340 Msa1272120:CDS 45.0%
! GTTCTCTCTAAGAACCCAGA+AGG + chr8_3:5576541-5576560 None:intergenic 45.0%
GAGAACAAAGGAACAAGGGA+TGG - chr8_3:5576555-5576574 Msa1272120:CDS 45.0%
ATCCTTCGTCACAGTTCAGT+TGG - chr8_3:5576607-5576626 Msa1272120:CDS 45.0%
TTCGTCACAGTTCAGTTGGT+GGG - chr8_3:5576611-5576630 Msa1272120:CDS 45.0%
! ATGGTGTGCCACTAATCACA+TGG - chr8_3:5576680-5576699 Msa1272120:CDS 45.0%
GTTCTCTGCTCAGCAAATAG+AGG + chr8_3:5576706-5576725 None:intergenic 45.0%
! AATGCGGTTTTGCTGAGTGA+AGG - chr8_3:5576727-5576746 Msa1272120:CDS 45.0%
GCTGAGTGAAGGACTAAAAG+TGG - chr8_3:5576738-5576757 Msa1272120:CDS 45.0%
AAGGACTAAAAGTGGGACTG+AGG - chr8_3:5576746-5576765 Msa1272120:CDS 45.0%
ATTGCAGTTGTTCCAGGTGT+TGG - chr8_3:5575581-5575600 Msa1272120:CDS 45.0%
AAGTGGCTATATCCAACACC+TGG + chr8_3:5575596-5575615 None:intergenic 45.0%
ACATGCTTCATTCCCTCACT+TGG - chr8_3:5575674-5575693 Msa1272120:CDS 45.0%
AACTCCAAAGACCTACCACA+AGG - chr8_3:5575773-5575792 Msa1272120:CDS 45.0%
! AACTTTGAGGACACCCTTTG+TGG - chr8_3:5575871-5575890 Msa1272120:CDS 45.0%
CCTGGTATTTGAATAGGCTC+TGG + chr8_3:5576055-5576074 None:intergenic 45.0%
CCAGAGCCTATTCAAATACC+AGG - chr8_3:5576052-5576071 Msa1272120:CDS 45.0%
GCTGTGTACCAATTCATGGT+CGG - chr8_3:5576074-5576093 Msa1272120:CDS 45.0%
CTGTGTACCAATTCATGGTC+GGG - chr8_3:5576075-5576094 Msa1272120:CDS 45.0%
ACAAGATCCCGACCATGAAT+TGG + chr8_3:5576085-5576104 None:intergenic 45.0%
GCACTCACAGAAGAAGGAAA+TGG - chr8_3:5576229-5576248 Msa1272120:CDS 45.0%
GGTCCAACAGCATAAACATC+AGG + chr8_3:5576259-5576278 None:intergenic 45.0%
ATCCAAACGCCAACCAAATC+CGG - chr8_3:5576283-5576302 Msa1272120:CDS 45.0%
CAACCCATTAGCATCATCAC+CGG + chr8_3:5576305-5576324 None:intergenic 45.0%
! ATGGGTTGAAGTGTCTGACA+TGG - chr8_3:5576317-5576336 Msa1272120:CDS 45.0%
! GTTGAAGTGTCTGACATGGT+TGG - chr8_3:5576321-5576340 Msa1272120:CDS 45.0%
! GTTCTCTCTAAGAACCCAGA+AGG + chr8_3:5576541-5576560 None:intergenic 45.0%
GAGAACAAAGGAACAAGGGA+TGG - chr8_3:5576555-5576574 Msa1272120:CDS 45.0%
ATCCTTCGTCACAGTTCAGT+TGG - chr8_3:5576607-5576626 Msa1272120:CDS 45.0%
TTCGTCACAGTTCAGTTGGT+GGG - chr8_3:5576611-5576630 Msa1272120:CDS 45.0%
! ATGGTGTGCCACTAATCACA+TGG - chr8_3:5576680-5576699 Msa1272120:CDS 45.0%
GTTCTCTGCTCAGCAAATAG+AGG + chr8_3:5576706-5576725 None:intergenic 45.0%
! AATGCGGTTTTGCTGAGTGA+AGG - chr8_3:5576727-5576746 Msa1272120:CDS 45.0%
GCTGAGTGAAGGACTAAAAG+TGG - chr8_3:5576738-5576757 Msa1272120:CDS 45.0%
AAGGACTAAAAGTGGGACTG+AGG - chr8_3:5576746-5576765 Msa1272120:CDS 45.0%
GTTGGGAGAGAACCAAGTGA+GGG + chr8_3:5575689-5575708 None:intergenic 50.0%
AGTTGGGAGAGAACCAAGTG+AGG + chr8_3:5575690-5575709 None:intergenic 50.0%
!! GGTAGGTCTTTGGAGTTGAC+TGG + chr8_3:5575770-5575789 None:intergenic 50.0%
TCAACCACCAAGGCCACAAA+GGG + chr8_3:5575887-5575906 None:intergenic 50.0%
ATCAACCACCAAGGCCACAA+AGG + chr8_3:5575888-5575907 None:intergenic 50.0%
GACAAAGTGGTGACTGAAGC+AGG + chr8_3:5575974-5575993 None:intergenic 50.0%
CCATGAATTGGTACACAGCC+TGG + chr8_3:5576073-5576092 None:intergenic 50.0%
CCAGGCTGTGTACCAATTCA+TGG - chr8_3:5576070-5576089 Msa1272120:CDS 50.0%
! GCATCATCACCGGATTTGGT+TGG + chr8_3:5576295-5576314 None:intergenic 50.0%
!! GCAGCATTGGCTGTACTACT+TGG + chr8_3:5576478-5576497 None:intergenic 50.0%
TGAATCTGTGGTGCCCATGA+TGG + chr8_3:5576586-5576605 None:intergenic 50.0%
CACCAACTGAACTGTGACGA+AGG + chr8_3:5576612-5576631 None:intergenic 50.0%
CTTCGTCACAGTTCAGTTGG+TGG - chr8_3:5576610-5576629 Msa1272120:CDS 50.0%
GGTTCTTGACTCACTGTGGT+TGG - chr8_3:5576632-5576651 Msa1272120:CDS 50.0%
! ACGCTTGAGAGTGTGTTGCA+TGG - chr8_3:5576661-5576680 Msa1272120:CDS 50.0%
TGCTGAGCAGAGAACGAATG+CGG - chr8_3:5576711-5576730 Msa1272120:CDS 50.0%
TGTCTCATGGAAGGGGAAGA+AGG - chr8_3:5576826-5576845 Msa1272120:CDS 50.0%
TCATGGAAGGGGAAGAAGGT+GGG - chr8_3:5576830-5576849 Msa1272120:CDS 50.0%
GTTGGGAGAGAACCAAGTGA+GGG + chr8_3:5575689-5575708 None:intergenic 50.0%
AGTTGGGAGAGAACCAAGTG+AGG + chr8_3:5575690-5575709 None:intergenic 50.0%
!! GGTAGGTCTTTGGAGTTGAC+TGG + chr8_3:5575770-5575789 None:intergenic 50.0%
TCAACCACCAAGGCCACAAA+GGG + chr8_3:5575887-5575906 None:intergenic 50.0%
ATCAACCACCAAGGCCACAA+AGG + chr8_3:5575888-5575907 None:intergenic 50.0%
GACAAAGTGGTGACTGAAGC+AGG + chr8_3:5575974-5575993 None:intergenic 50.0%
CCATGAATTGGTACACAGCC+TGG + chr8_3:5576073-5576092 None:intergenic 50.0%
CCAGGCTGTGTACCAATTCA+TGG - chr8_3:5576070-5576089 Msa1272120:CDS 50.0%
! GCATCATCACCGGATTTGGT+TGG + chr8_3:5576295-5576314 None:intergenic 50.0%
!! GCAGCATTGGCTGTACTACT+TGG + chr8_3:5576478-5576497 None:intergenic 50.0%
TGAATCTGTGGTGCCCATGA+TGG + chr8_3:5576586-5576605 None:intergenic 50.0%
CACCAACTGAACTGTGACGA+AGG + chr8_3:5576612-5576631 None:intergenic 50.0%
CTTCGTCACAGTTCAGTTGG+TGG - chr8_3:5576610-5576629 Msa1272120:CDS 50.0%
GGTTCTTGACTCACTGTGGT+TGG - chr8_3:5576632-5576651 Msa1272120:CDS 50.0%
! ACGCTTGAGAGTGTGTTGCA+TGG - chr8_3:5576661-5576680 Msa1272120:CDS 50.0%
TGCTGAGCAGAGAACGAATG+CGG - chr8_3:5576711-5576730 Msa1272120:CDS 50.0%
TGTCTCATGGAAGGGGAAGA+AGG - chr8_3:5576826-5576845 Msa1272120:CDS 50.0%
TCATGGAAGGGGAAGAAGGT+GGG - chr8_3:5576830-5576849 Msa1272120:CDS 50.0%
! CACCGGATTTGGTTGGCGTT+TGG + chr8_3:5576288-5576307 None:intergenic 55.0%
! GGTGGGTTCTTGACTCACTG+TGG - chr8_3:5576628-5576647 Msa1272120:CDS 55.0%
CTCATGGAAGGGGAAGAAGG+TGG - chr8_3:5576829-5576848 Msa1272120:CDS 55.0%
! CACCGGATTTGGTTGGCGTT+TGG + chr8_3:5576288-5576307 None:intergenic 55.0%
! GGTGGGTTCTTGACTCACTG+TGG - chr8_3:5576628-5576647 Msa1272120:CDS 55.0%
CTCATGGAAGGGGAAGAAGG+TGG - chr8_3:5576829-5576848 Msa1272120:CDS 55.0%
GAGGACACCCTTTGTGGCCT+TGG - chr8_3:5575877-5575896 Msa1272120:CDS 60.0%
! GACACCCTTTGTGGCCTTGG+TGG - chr8_3:5575880-5575899 Msa1272120:CDS 60.0%
GAGGACACCCTTTGTGGCCT+TGG - chr8_3:5575877-5575896 Msa1272120:CDS 60.0%
! GACACCCTTTGTGGCCTTGG+TGG - chr8_3:5575880-5575899 Msa1272120:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 5575563 5576969 5575563 ID=Msa1272120;Name=Msa1272120
chr8_3 mRNA 5575563 5576969 5575563 ID=Msa1272120-mRNA-1;Parent=Msa1272120;Name=Msa1272120-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|468
chr8_3 exon 5575563 5576969 5575563 ID=Msa1272120-mRNA-1:exon:2028;Parent=Msa1272120-mRNA-1
chr8_3 CDS 5575563 5576969 5575563 ID=Msa1272120-mRNA-1:cds;Parent=Msa1272120-mRNA-1
Gene Sequence

>Msa1272120

ATGGAGAAAACAATTCATATTGCAGTTGTTCCAGGTGTTGGATATAGCCACTTATTCCCAATTCTTCAATTCTCCAAGAGACTTGTTCAGCTTCATCCATACTTTCATGTCACATGCTTCATTCCCTCACTTGGTTCTCTCCCAACTGATTCAAAAACAATCCTTCAAACTCTTCCATCAAACATCAGCTGTACTTTTCTTTCACCAGTCAACTCCAAAGACCTACCACAAGGAATTGCTTTAGCTCTTCAACTTCAGCTCACACTAACTCACTCATTACCATCCATACATCAGGCTATGAAATCCTTAACTTTGAGGACACCCTTTGTGGCCTTGGTGGTTGATTCTTTTGCTATTGAAGCACTAGATTTGGCTAAAGAGTTCAACATGTTGTCCTATGTTTACTTTCCTGCTTCAGTCACCACTTTGTCTTCATACTTCTATTTACTCAAGTTGAATAAGGAAACATCATGTGAGTACAGAGATCTTCCAGAGCCTATTCAAATACCAGGCTGTGTACCAATTCATGGTCGGGATCTTGTTGACCTAGCTCAAGATAGATCATGTCAATCTTACAAATTCTTAGTTCAACGTGTTGAAAAATTCCGTCTTTTTGATGGTATTCTTATTAATAGCTTCCTAGAAATTGAAAAAGGTCCTATAGAAGCACTCACAGAAGAAGGAAATGGCAACCCTGATGTTTATGCTGTTGGACCAATTATCCAAACGCCAACCAAATCCGGTGATGATGCTAATGGGTTGAAGTGTCTGACATGGTTGGACAAACAGCAACCTTGTTCAGTTTTGTATGTTTCTTTTGGGAGTGGTGGCACACTTTCGCAAGAACAAATTAATGAGTTGGCTTTGGGTTTGGAATTGAGTAATCATAAATTCTTATGGGTTGTGAGATCACCAAGTAGTACAGCCAATGCTGCATATCTTTCAGCATCTGATGTTGACCCTTTACAATTTTTACCTTCTGGGTTCTTAGAGAGAACAAAGGAACAAGGGATGGTTATTCCATCATGGGCACCACAGATTCAAATCCTTCGTCACAGTTCAGTTGGTGGGTTCTTGACTCACTGTGGTTGGAATTCAACGCTTGAGAGTGTGTTGCATGGTGTGCCACTAATCACATGGCCTCTATTTGCTGAGCAGAGAACGAATGCGGTTTTGCTGAGTGAAGGACTAAAAGTGGGACTGAGGCCAAAAGTTAATCAGAATGGCATTGTGGAAAAGGTACAAATTGCAGAGTTAATCAAGTGTCTCATGGAAGGGGAAGAAGGTGGGAAACTGCGCAAAAATATGAAGGAATTGAAAGAAGCTGCTAATAGTGCACATAAAGATGATGGATCTTCTACAATGACACTTTCTCAATTAGCACTCAAGTGGAGAAATATGGTATAG

Protein sequence

>Msa1272120

MEKTIHIAVVPGVGYSHLFPILQFSKRLVQLHPYFHVTCFIPSLGSLPTDSKTILQTLPSNISCTFLSPVNSKDLPQGIALALQLQLTLTHSLPSIHQAMKSLTLRTPFVALVVDSFAIEALDLAKEFNMLSYVYFPASVTTLSSYFYLLKLNKETSCEYRDLPEPIQIPGCVPIHGRDLVDLAQDRSCQSYKFLVQRVEKFRLFDGILINSFLEIEKGPIEALTEEGNGNPDVYAVGPIIQTPTKSGDDANGLKCLTWLDKQQPCSVLYVSFGSGGTLSQEQINELALGLELSNHKFLWVVRSPSSTANAAYLSASDVDPLQFLPSGFLERTKEQGMVIPSWAPQIQILRHSSVGGFLTHCGWNSTLESVLHGVPLITWPLFAEQRTNAVLLSEGLKVGLRPKVNQNGIVEKVQIAELIKCLMEGEEGGKLRKNMKELKEAANSAHKDDGSSTMTLSQLALKWRNMV*