AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1309870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309870 MtrunA17_Chr8g0336741 92.026 464 37 0 5 468 12 475 0.0 882
Msa1309870 MtrunA17_Chr8g0336651 87.794 467 57 0 1 467 1 467 0.0 838
Msa1309870 MtrunA17_Chr8g0336651 72.553 470 125 3 3 468 778 1247 0.0 695
Msa1309870 MtrunA17_Chr8g0336651 65.714 280 66 1 188 467 528 777 1.88e-116 370
Msa1309870 MtrunA17_Chr8g0336731 89.107 459 50 0 9 467 35 493 0.0 826
Msa1309870 MtrunA17_Chr1g0153451 76.972 469 105 2 1 468 1 467 0.0 734
Msa1309870 MtrunA17_Chr8g0336691 71.642 469 131 1 1 467 8 476 0.0 689
Msa1309870 MtrunA17_Chr8g0336691 71.581 468 131 2 3 468 916 1383 0.0 679
Msa1309870 MtrunA17_Chr8g0336691 68.602 465 120 1 3 467 477 915 0.0 655
Msa1309870 MtrunA17_Chr7g0232411 58.974 468 191 1 1 467 1 468 0.0 574
Msa1309870 MtrunA17_Chr7g0232391 58.761 468 192 1 1 467 1 468 0.0 565
Msa1309870 MtrunA17_Chr7g0232341 56.716 469 201 2 1 467 1 469 0.0 549
Msa1309870 MtrunA17_Chr7g0232331 57.451 463 195 2 1 461 1 463 0.0 546
Msa1309870 MtrunA17_Chr7g0232401 53.319 467 209 4 1 461 1 464 2.26e-176 503
Msa1309870 MtrunA17_Chr7g0232311 56.290 469 200 3 1 467 1 466 1.66e-175 500
Msa1309870 MtrunA17_Chr7g0275511 51.299 462 223 2 7 466 16 477 8.30e-174 496
Msa1309870 MtrunA17_Chr8g0334851 52.101 476 215 6 1 467 1 472 4.77e-173 494
Msa1309870 MtrunA17_Chr8g0373301 52.903 465 208 6 4 463 7 465 1.70e-166 478
Msa1309870 MtrunA17_Chr7g0232351 60.582 378 149 0 1 378 1 378 3.00e-165 471
Msa1309870 MtrunA17_Chr6g0449931 51.271 472 223 4 1 467 1 470 6.69e-163 468
Msa1309870 MtrunA17_Chr8g0339631 51.899 474 218 6 1 467 1 471 4.07e-161 464
Msa1309870 MtrunA17_Chr8g0334861 50.000 474 222 9 1 467 1 466 1.06e-156 452
Msa1309870 MtrunA17_Chr6g0459311 49.041 469 231 6 1 465 8 472 1.38e-156 452
Msa1309870 MtrunA17_Chr8g0339461 50.105 477 227 5 1 468 1 475 2.97e-155 449
Msa1309870 MtrunA17_Chr8g0339451 50.649 462 217 5 15 467 7 466 4.64e-154 446
Msa1309870 MtrunA17_Chr8g0339441 50.630 476 182 6 1 467 1 432 5.18e-153 442
Msa1309870 MtrunA17_Chr6g0486251 47.761 469 237 6 1 465 1 465 2.30e-152 441
Msa1309870 MtrunA17_Chr6g0486201 47.761 469 237 6 1 465 1 465 2.30e-152 441
Msa1309870 MtrunA17_Chr8g0347271 45.356 463 245 4 7 467 20 476 2.02e-146 427
Msa1309870 MtrunA17_Chr8g0347281 45.572 463 244 4 7 467 19 475 2.11e-145 424
Msa1309870 MtrunA17_Chr8g0335161 47.046 474 239 8 1 467 1 469 2.36e-143 419
Msa1309870 MtrunA17_Chr8g0361371 46.444 478 239 8 2 468 3 474 1.47e-142 417
Msa1309870 MtrunA17_Chr8g0335141 46.512 473 242 7 1 467 4 471 1.50e-139 409
Msa1309870 MtrunA17_Chr8g0334831 45.082 488 242 9 1 468 1 482 2.64e-135 399
Msa1309870 MtrunA17_Chr1g0153461 76.852 216 49 1 254 468 1 216 1.03e-120 351
Msa1309870 MtrunA17_Chr8g0339601 52.108 332 153 3 142 467 2 333 1.06e-114 340
Msa1309870 MtrunA17_Chr8g0370941 39.549 488 259 14 3 461 5 485 3.66e-96 299
Msa1309870 MtrunA17_Chr6g0462541 34.664 476 278 8 7 465 5 464 2.51e-92 288
Msa1309870 MtrunA17_Chr6g0462571 34.810 474 278 10 7 465 5 462 1.91e-88 278
Msa1309870 MtrunA17_Chr6g0462531 35.430 477 274 12 7 465 5 465 2.07e-88 278
Msa1309870 MtrunA17_Chr5g0403641 35.908 479 256 12 1 461 54 499 3.03e-87 276
Msa1309870 MtrunA17_Chr6g0462521 33.898 472 274 11 7 465 5 451 7.16e-87 273
Msa1309870 MtrunA17_Chr6g0462551 33.403 479 281 10 7 465 5 465 1.40e-85 271
Msa1309870 MtrunA17_Chr3g0079731 32.025 484 305 11 1 464 1 480 7.16e-79 253
Msa1309870 MtrunA17_Chr6g0449991 42.308 338 170 5 1 333 1 318 1.42e-76 242
Msa1309870 MtrunA17_Chr8g0337381 78.030 132 25 2 338 468 1 129 1.16e-68 215
Msa1309870 MtrunA17_Chr5g0448521 31.328 482 287 15 3 460 2 463 2.06e-63 213
Msa1309870 MtrunA17_Chr5g0442491 32.371 485 285 15 3 460 2 470 9.14e-63 211
Msa1309870 MtrunA17_Chr5g0442541 30.737 475 297 13 3 460 2 461 1.02e-62 211
Msa1309870 MtrunA17_Chr5g0442561 30.505 495 295 16 3 468 2 476 1.62e-61 207
Msa1309870 MtrunA17_Chr5g0442581 31.006 487 291 15 3 460 2 472 1.54e-60 206
Msa1309870 MtrunA17_Chr5g0442521 31.535 482 294 14 3 460 2 471 2.56e-60 204
Msa1309870 MtrunA17_Chr5g0429711 31.290 473 291 13 1 460 6 457 9.54e-59 200
Msa1309870 MtrunA17_Chr5g0429681 32.917 480 279 17 1 460 39 495 1.01e-57 198
Msa1309870 MtrunA17_Chr3g0078841 28.252 492 288 13 6 460 10 473 1.27e-57 197
Msa1309870 MtrunA17_Chr5g0414331 30.083 482 269 13 4 460 11 449 2.83e-57 196
Msa1309870 MtrunA17_Chr5g0426431 31.301 492 271 18 6 460 12 473 4.33e-55 191
Msa1309870 MtrunA17_Chr3g0118671 30.924 498 277 18 1 460 1 469 4.61e-55 191
Msa1309870 MtrunA17_Chr2g0302961 30.021 473 285 15 11 460 12 461 5.82e-55 190
Msa1309870 MtrunA17_Chr2g0302991 30.388 464 292 14 11 460 12 458 7.00e-55 190
Msa1309870 MtrunA17_Chr5g0414321 29.485 485 270 14 3 460 8 447 2.71e-54 188
Msa1309870 MtrunA17_Chr8g0366391 31.174 494 288 16 5 467 8 480 4.96e-54 188
Msa1309870 MtrunA17_Chr3g0118691 29.532 491 283 15 6 460 15 478 9.24e-54 187
Msa1309870 MtrunA17_Chr1g0159551 31.842 380 235 10 90 460 91 455 1.35e-53 186
Msa1309870 MtrunA17_Chr5g0442601 29.448 489 296 16 3 460 401 871 1.44e-53 192
Msa1309870 MtrunA17_Chr5g0442601 33.125 320 173 9 94 401 43 333 3.49e-42 160
Msa1309870 MtrunA17_Chr5g0442511 29.918 488 268 20 3 460 46 489 1.51e-53 187
Msa1309870 MtrunA17_Chr6g0454151 32.527 372 213 9 108 460 121 473 2.45e-53 186
Msa1309870 MtrunA17_Chr3g0118701 30.169 474 268 15 6 443 15 461 4.55e-53 186
Msa1309870 MtrunA17_Chr1g0173121 31.398 379 237 9 90 460 95 458 6.70e-53 184
Msa1309870 MtrunA17_Chr3g0092641 29.268 492 281 16 6 460 12 473 8.25e-53 184
Msa1309870 MtrunA17_Chr4g0014061 40.217 276 130 9 207 460 206 468 2.15e-52 184
Msa1309870 MtrunA17_Chr6g0454301 28.659 492 286 13 6 460 263 726 1.18e-51 186
Msa1309870 MtrunA17_Chr6g0454301 33.473 239 133 4 232 460 3 225 7.87e-37 144
Msa1309870 MtrunA17_Chr3g0112771 35.312 337 183 10 129 460 141 447 1.26e-51 181
Msa1309870 MtrunA17_Chr3g0118711 29.735 491 282 15 6 460 13 476 1.27e-51 181
Msa1309870 MtrunA17_Chr4g0053321 29.938 481 284 13 4 460 24 475 1.38e-51 182
Msa1309870 MtrunA17_Chr6g0464841 30.720 472 278 15 6 460 11 450 2.91e-51 180
Msa1309870 MtrunA17_Chr8g0359821 28.427 496 290 18 2 460 6 473 3.92e-51 180
Msa1309870 MtrunA17_Chr4g0050341 28.514 498 289 13 6 463 19 489 1.29e-50 179
Msa1309870 MtrunA17_Chr7g0265141 34.174 357 194 11 123 453 133 474 1.39e-50 179
Msa1309870 MtrunA17_Chr8g0382021 30.713 407 249 11 65 460 100 484 2.84e-50 178
Msa1309870 MtrunA17_Chr4g0053501 28.092 477 303 12 2 460 6 460 2.97e-50 178
Msa1309870 MtrunA17_Chr6g0454341 26.016 492 299 13 6 460 10 473 3.09e-50 177
Msa1309870 MtrunA17_Chr3g0118721 37.358 265 136 7 208 460 39 285 7.36e-50 172
Msa1309870 MtrunA17_Chr1g0207981 32.249 369 210 10 105 460 127 468 2.12e-49 176
Msa1309870 MtrunA17_Chr6g0464871 29.512 471 285 12 6 460 23 462 2.15e-49 175
Msa1309870 MtrunA17_Chr6g0454321 27.500 480 283 13 6 448 10 461 3.10e-49 178
Msa1309870 MtrunA17_Chr8g0336331 28.279 488 292 14 6 460 10 472 4.27e-49 174
Msa1309870 MtrunA17_Chr5g0419761 35.989 364 188 15 125 460 135 481 6.29e-49 174
Msa1309870 MtrunA17_Chr6g0454181 28.138 494 288 14 6 460 10 475 1.11e-48 174
Msa1309870 MtrunA17_Chr4g0044511 29.741 501 272 17 3 460 37 500 1.89e-48 173
Msa1309870 MtrunA17_Chr3g0118771 29.124 491 285 16 6 460 21 484 2.20e-48 173
Msa1309870 MtrunA17_Chr6g0454201 34.539 304 168 8 169 460 192 476 4.31e-48 172
Msa1309870 MtrunA17_Chr5g0426401 36.066 305 164 9 169 460 20 306 4.62e-48 167
Msa1309870 MtrunA17_Chr6g0453951 27.767 497 292 15 3 460 54 522 5.91e-48 172
Msa1309870 MtrunA17_Chr6g0453961 31.467 375 216 10 108 460 130 485 8.48e-48 171
Msa1309870 MtrunA17_Chr5g0440421 29.376 497 286 15 2 453 6 482 1.04e-47 171
Msa1309870 MtrunA17_Chr3g0118661 29.243 489 286 11 6 460 13 475 1.72e-47 170
Msa1309870 MtrunA17_Chr7g0275681 28.231 503 275 16 6 460 12 476 1.93e-47 170
Msa1309870 MtrunA17_Chr6g0454401 28.370 497 290 19 3 460 7 476 2.41e-47 170
Msa1309870 MtrunA17_Chr7g0217881 29.534 386 219 9 93 460 107 457 4.12e-47 169
Msa1309870 MtrunA17_Chr6g0464881 27.254 488 291 13 1 461 1 451 8.00e-47 168
Msa1309870 MtrunA17_Chr6g0454191 30.400 375 220 10 108 460 121 476 1.36e-46 168
Msa1309870 MtrunA17_Chr2g0329111 29.832 476 289 16 1 449 1 458 1.99e-46 167
Msa1309870 MtrunA17_Chr6g0454141 29.495 495 288 17 2 460 6 475 4.44e-46 166
Msa1309870 MtrunA17_Chr5g0423981 32.787 305 174 7 168 460 155 440 7.14e-46 165
Msa1309870 MtrunA17_Chr2g0278711 27.586 493 296 14 3 461 8 473 1.57e-45 165
Msa1309870 MtrunA17_Chr4g0066131 36.594 276 147 9 206 460 202 470 2.16e-45 165
Msa1309870 MtrunA17_Chr4g0072761 33.144 353 207 10 112 460 121 448 2.91e-45 164
Msa1309870 MtrunA17_Chr3g0079711 41.489 188 106 2 283 466 3 190 4.55e-45 155
Msa1309870 MtrunA17_Chr3g0112761 30.959 365 223 12 108 462 102 447 7.31e-45 162
Msa1309870 MtrunA17_Chr6g0454361 29.337 392 230 11 93 460 108 476 9.81e-45 163
Msa1309870 MtrunA17_Chr6g0464861 28.151 476 284 11 6 460 11 449 1.87e-44 161
Msa1309870 MtrunA17_Chr6g0454291 31.908 304 176 6 169 460 188 472 2.16e-44 162
Msa1309870 MtrunA17_Chr8g0361411 30.083 482 270 19 6 460 8 449 2.42e-44 161
Msa1309870 MtrunA17_Chr6g0464921 26.875 480 273 14 6 453 11 444 3.32e-44 161
Msa1309870 MtrunA17_Chr6g0463861 33.818 275 156 8 206 460 201 469 4.56e-44 161
Msa1309870 MtrunA17_Chr7g0265041 28.112 498 291 14 6 460 11 484 4.69e-44 161
Msa1309870 MtrunA17_Chr6g0454331 28.610 374 227 8 108 460 120 474 6.11e-44 160
Msa1309870 MtrunA17_Chr6g0454261 28.226 496 293 19 2 460 6 475 7.09e-44 160
Msa1309870 MtrunA17_Chr6g0454221 36.250 240 126 5 232 460 3 226 7.10e-44 156
Msa1309870 MtrunA17_Chr8g0380531 27.778 486 292 12 4 465 8 458 8.98e-44 160
Msa1309870 MtrunA17_Chr7g0249981 30.411 365 213 8 104 453 117 455 1.13e-43 160
Msa1309870 MtrunA17_Chr7g0265151 27.767 497 293 14 5 460 8 479 2.05e-43 159
Msa1309870 MtrunA17_Chr6g0452771 31.016 374 218 10 108 460 121 475 2.56e-43 159
Msa1309870 MtrunA17_Chr6g0454211 28.610 374 227 8 108 460 408 762 3.15e-43 162
Msa1309870 MtrunA17_Chr6g0454211 29.730 222 98 8 169 378 61 236 2.74e-18 87.8
Msa1309870 MtrunA17_Chr4g0066151 33.818 275 156 8 206 460 207 475 5.16e-43 158
Msa1309870 MtrunA17_Chr5g0420801 37.109 256 149 5 207 461 211 455 5.90e-43 157
Msa1309870 MtrunA17_Chr4g0066261 29.412 391 227 10 96 457 104 474 8.32e-43 158
Msa1309870 MtrunA17_Chr4g0042891 27.959 490 307 15 2 468 3 469 8.81e-43 157
Msa1309870 MtrunA17_Chr7g0249931 30.407 467 278 16 3 453 37 472 9.29e-43 157
Msa1309870 MtrunA17_Chr5g0431441 29.668 482 268 15 6 457 18 458 9.79e-43 157
Msa1309870 MtrunA17_Chr4g0066221 34.354 294 167 8 194 467 196 483 1.00e-42 157
Msa1309870 MtrunA17_Chr7g0265101 29.209 493 290 16 5 458 8 480 1.01e-42 158
Msa1309870 MtrunA17_Chr7g0243801 34.571 350 190 11 133 460 140 472 1.46e-42 157
Msa1309870 MtrunA17_Chr4g0044521 28.862 492 263 19 5 453 8 455 2.27e-42 156
Msa1309870 MtrunA17_Chr6g0454271 31.186 295 172 6 178 460 7 282 4.67e-42 151
Msa1309870 MtrunA17_Chr7g0218841 27.609 460 281 14 6 447 6 431 5.20e-42 154
Msa1309870 MtrunA17_Chr4g0066201 27.273 484 302 14 1 460 13 470 6.27e-42 155
Msa1309870 MtrunA17_Chr8g0377921 28.425 489 281 15 7 460 5 459 6.70e-42 155
Msa1309870 MtrunA17_Chr7g0243631 38.710 279 131 9 207 460 219 482 1.12e-41 155
Msa1309870 MtrunA17_Chr7g0265051 37.226 274 137 7 207 458 218 478 1.17e-41 155
Msa1309870 MtrunA17_Chr7g0243931 28.398 493 294 17 5 460 16 486 1.36e-41 155
Msa1309870 MtrunA17_Chr4g0011051 27.400 500 289 17 1 453 4 476 1.40e-41 154
Msa1309870 MtrunA17_Chr7g0243871 36.271 295 148 10 179 460 201 468 1.64e-41 154
Msa1309870 MtrunA17_Chr6g0454121 30.968 310 170 9 161 460 199 474 1.98e-41 154
Msa1309870 MtrunA17_Chr7g0218791 28.251 446 270 13 6 433 5 418 2.14e-41 153
Msa1309870 MtrunA17_Chr1g0179901 27.237 503 293 20 4 460 14 489 2.27e-41 154
Msa1309870 MtrunA17_Chr2g0294921 27.968 497 296 15 1 460 155 626 2.36e-41 156
Msa1309870 MtrunA17_Chr7g0243771 34.000 350 192 11 133 460 139 471 4.37e-41 153
Msa1309870 MtrunA17_Chr7g0243681 38.462 273 135 9 207 460 217 475 5.66e-41 153
Msa1309870 MtrunA17_Chr8g0369341 27.907 473 308 10 6 460 7 464 6.88e-41 152
Msa1309870 MtrunA17_Chr7g0218831 26.797 459 287 12 6 448 6 431 9.89e-41 151
Msa1309870 MtrunA17_Chr4g0060511 37.050 278 137 9 207 460 220 483 1.44e-40 152
Msa1309870 MtrunA17_Chr1g0207931 35.273 275 143 9 202 460 238 493 1.45e-40 152
Msa1309870 MtrunA17_Chr7g0243781 36.218 312 161 10 169 460 178 471 2.22e-40 151
Msa1309870 MtrunA17_Chr3g0121991 27.651 481 308 13 1 457 74 538 2.45e-40 152
Msa1309870 MtrunA17_Chr6g0454131 30.000 310 173 8 161 460 199 474 2.64e-40 150
Msa1309870 MtrunA17_Chr7g0250001 26.514 479 299 14 1 461 1 444 3.28e-40 150
Msa1309870 MtrunA17_Chr3g0122001 28.074 488 304 16 1 460 1 469 3.55e-40 154
Msa1309870 MtrunA17_Chr3g0122001 27.479 484 311 15 1 460 481 948 1.10e-39 152
Msa1309870 MtrunA17_Chr4g0066281 29.306 447 255 18 46 460 45 462 3.62e-40 150
Msa1309870 MtrunA17_Chr6g0482061 26.446 484 318 13 6 465 11 480 3.65e-40 150
Msa1309870 MtrunA17_Chr4g0032331 32.267 344 206 10 124 461 124 446 3.84e-40 150
Msa1309870 MtrunA17_Chr5g0428081 27.049 488 310 16 1 460 6 475 5.07e-40 150
Msa1309870 MtrunA17_Chr7g0249961 36.408 206 114 2 255 460 67 255 6.14e-40 144
Msa1309870 MtrunA17_Chr3g0098111 29.688 384 221 13 102 466 118 471 6.15e-40 150
Msa1309870 MtrunA17_Chr4g0044501 34.586 266 148 7 207 460 220 471 7.79e-40 149
Msa1309870 MtrunA17_Chr8g0374901 32.975 279 161 8 199 457 199 471 1.08e-39 149
Msa1309870 MtrunA17_Chr5g0419771 27.525 505 288 17 4 460 34 508 1.11e-39 149
Msa1309870 MtrunA17_Chr5g0431401 27.273 473 288 13 6 460 10 444 1.16e-39 148
Msa1309870 MtrunA17_Chr8g0367221 28.571 476 292 15 2 454 794 1244 1.33e-39 153
Msa1309870 MtrunA17_Chr8g0367221 28.692 474 286 15 2 450 1284 1730 1.53e-36 144
Msa1309870 MtrunA17_Chr8g0367221 35.271 258 153 5 206 461 219 464 1.56e-35 140
Msa1309870 MtrunA17_Chr1g0207971 32.927 328 160 11 150 460 165 449 1.49e-39 148
Msa1309870 MtrunA17_Chr8g0374931 26.955 486 301 14 1 453 6 470 1.51e-39 149
Msa1309870 MtrunA17_Chr1g0207831 29.873 395 214 14 94 460 100 459 2.54e-39 148
Msa1309870 MtrunA17_Chr4g0066171 25.052 483 313 12 1 460 16 472 2.79e-39 148
Msa1309870 MtrunA17_Chr4g0044481 37.963 216 111 5 195 401 196 397 3.40e-39 146
Msa1309870 MtrunA17_Chr4g0072771 28.481 474 285 16 5 460 24 461 4.13e-39 147
Msa1309870 MtrunA17_Chr1g0207951 31.481 324 169 8 150 460 283 566 4.19e-39 151
Msa1309870 MtrunA17_Chr1g0207951 30.239 377 208 12 106 460 761 1104 1.27e-36 144
Msa1309870 MtrunA17_Chr6g0454171 32.734 278 144 8 194 460 60 305 4.30e-39 144
Msa1309870 MtrunA17_Chr4g0042931 27.105 487 313 16 2 468 3 467 5.05e-39 147
Msa1309870 MtrunA17_Chr8g0377941 28.157 483 287 17 5 460 8 457 5.51e-39 147
Msa1309870 MtrunA17_Chr8g0334841 49.367 158 73 4 169 321 1 156 5.57e-39 139
Msa1309870 MtrunA17_Chr8g0355221 37.162 296 152 10 187 460 199 482 5.80e-39 147
Msa1309870 MtrunA17_Chr2g0307961 28.810 479 290 16 6 460 13 464 6.60e-39 147
Msa1309870 MtrunA17_Chr5g0401721 25.761 493 302 19 2 460 4 466 7.49e-39 147
Msa1309870 MtrunA17_Chr8g0374971 31.752 274 161 7 207 460 209 476 1.48e-38 146
Msa1309870 MtrunA17_Chr7g0218311 27.767 497 294 18 1 460 11 479 1.71e-38 146
Msa1309870 MtrunA17_Chr7g0218811 33.210 271 153 7 192 460 201 445 1.90e-38 145
Msa1309870 MtrunA17_Chr3g0118751 26.157 497 273 15 1 460 1 440 3.33e-38 144
Msa1309870 MtrunA17_Chr8g0336321 30.870 460 272 20 2 438 3 439 4.20e-38 144
Msa1309870 MtrunA17_Chr7g0235051 38.321 274 132 10 207 457 187 446 4.71e-38 144
Msa1309870 MtrunA17_Chr7g0243861 37.184 277 138 8 207 460 220 483 5.06e-38 145
Msa1309870 MtrunA17_Chr5g0431361 26.653 484 276 14 6 458 12 447 5.61e-38 144
Msa1309870 MtrunA17_Chr8g0374941 32.042 284 167 8 194 457 1133 1410 9.07e-38 147
Msa1309870 MtrunA17_Chr8g0374941 33.209 268 153 8 199 446 665 926 9.99e-37 144
Msa1309870 MtrunA17_Chr8g0374941 31.868 273 160 8 194 446 195 461 6.05e-36 142
Msa1309870 MtrunA17_Chr6g0463851 30.976 297 176 9 194 467 198 488 1.38e-37 143
Msa1309870 MtrunA17_Chr8g0350881 31.707 287 170 7 194 460 196 476 1.45e-37 143
Msa1309870 MtrunA17_Chr8g0336251 30.435 460 274 20 2 438 3 439 3.35e-37 142
Msa1309870 MtrunA17_Chr8g0365811 28.723 376 227 12 106 460 598 953 4.80e-37 145
Msa1309870 MtrunA17_Chr8g0365811 34.263 251 135 8 195 431 205 439 7.32e-33 132
Msa1309870 MtrunA17_Chr2g0294941 33.088 272 157 8 194 446 96 361 5.08e-37 139
Msa1309870 MtrunA17_Chr7g0243951 37.184 277 137 10 207 460 217 479 5.13e-37 142
Msa1309870 MtrunA17_Chr5g0393591 29.517 393 209 17 73 453 88 424 8.26e-37 140
Msa1309870 MtrunA17_Chr1g0165701 39.381 226 112 5 246 460 268 479 8.93e-37 141
Msa1309870 MtrunA17_Chr2g0294931 32.168 286 169 8 194 460 198 477 9.77e-37 141
Msa1309870 MtrunA17_Chr6g0454351 27.700 426 253 15 55 460 70 460 9.77e-37 140
Msa1309870 MtrunA17_Chr7g0243851 32.353 374 204 13 118 460 83 438 1.11e-36 140
Msa1309870 MtrunA17_Chr8g0355011 26.975 367 206 8 108 463 45 360 1.72e-36 138
Msa1309870 MtrunA17_Chr7g0243761 37.597 258 130 9 207 448 217 459 1.86e-36 140
Msa1309870 MtrunA17_Chr5g0412111 27.651 481 300 17 3 460 2 457 2.56e-36 139
Msa1309870 MtrunA17_Chr1g0207861 30.000 380 221 12 108 466 115 470 3.50e-36 139
Msa1309870 MtrunA17_Chr7g0243911 40.488 205 99 5 257 449 22 215 4.14e-36 133
Msa1309870 MtrunA17_Chr7g0243711 36.992 246 122 6 237 460 78 312 6.07e-36 135
Msa1309870 MtrunA17_Chr7g0218821 28.371 356 218 10 93 439 101 428 7.25e-36 138
Msa1309870 MtrunA17_Chr1g0161351 31.169 385 202 16 102 460 146 493 9.76e-36 138
Msa1309870 MtrunA17_Chr2g0278721 29.870 462 276 17 3 439 514 952 1.58e-35 140
Msa1309870 MtrunA17_Chr2g0278721 26.974 456 300 12 3 445 12 447 1.13e-32 132
Msa1309870 MtrunA17_Chr5g0431371 26.737 475 290 13 2 457 6 441 1.91e-35 137
Msa1309870 MtrunA17_Chr5g0431421 25.988 481 284 14 6 460 10 444 3.54e-35 136
Msa1309870 MtrunA17_Chr5g0410941 26.186 485 316 15 1 460 18 485 5.76e-35 136
Msa1309870 MtrunA17_Chr7g0243611 40.265 226 106 8 207 416 78 290 1.44e-34 131
Msa1309870 MtrunA17_Chr7g0241781 29.194 459 243 20 3 439 6 404 1.45e-34 134
Msa1309870 MtrunA17_Chr4g0029151 28.571 455 278 16 5 441 19 444 2.49e-34 134
Msa1309870 MtrunA17_Chr6g0466831 27.233 459 290 14 3 445 15 445 5.35e-34 133
Msa1309870 MtrunA17_Chr3g0106231 26.709 468 286 13 6 457 18 444 5.55e-34 133
Msa1309870 MtrunA17_Chr7g0265111 26.747 501 295 18 5 460 38 511 8.13e-34 133
Msa1309870 MtrunA17_Chr5g0448551 32.344 337 184 11 112 432 110 418 1.16e-33 132
Msa1309870 MtrunA17_Chr4g0029131 28.698 453 280 18 5 441 11 436 2.31e-33 133
Msa1309870 MtrunA17_Chr5g0401851 37.668 223 117 6 256 467 275 486 2.71e-33 131
Msa1309870 MtrunA17_Chr5g0412101 28.804 368 221 12 100 446 106 453 3.09e-33 131
Msa1309870 MtrunA17_Chr5g0416741 28.293 410 222 16 94 460 99 479 3.68e-33 131
Msa1309870 MtrunA17_Chr5g0432731 30.537 298 170 8 169 453 12 285 7.36e-33 126
Msa1309870 MtrunA17_Chr6g0466841 26.797 459 292 14 3 445 15 445 1.22e-32 129
Msa1309870 MtrunA17_Chr7g0243811 42.718 206 99 7 207 406 190 382 1.96e-32 127
Msa1309870 MtrunA17_Chr7g0241801 29.978 457 242 20 3 439 6 404 3.53e-32 127
Msa1309870 MtrunA17_Chr2g0278741 26.477 457 301 14 3 445 94 529 6.59e-32 128
Msa1309870 MtrunA17_Chr4g0069611 25.641 468 274 12 3 439 12 436 1.52e-31 126
Msa1309870 MtrunA17_Chr6g0454371 35.714 182 101 4 279 460 1 166 1.95e-31 119
Msa1309870 MtrunA17_Chr5g0409591 36.232 207 116 3 257 449 275 479 3.99e-31 125
Msa1309870 MtrunA17_Chr5g0427571 41.530 183 94 5 257 438 103 273 6.02e-31 121
Msa1309870 MtrunA17_Chr5g0412131 29.459 370 215 14 100 446 106 452 1.45e-30 123
Msa1309870 MtrunA17_Chr6g0463891 28.571 385 211 15 112 460 124 480 1.77e-30 123
Msa1309870 MtrunA17_Chr3g0092031 34.197 193 112 4 254 445 1 179 5.53e-30 115
Msa1309870 MtrunA17_Chr4g0039881 34.762 210 120 5 239 445 224 419 1.50e-29 120
Msa1309870 MtrunA17_Chr6g0454251 25.537 419 243 13 2 378 3 394 1.73e-29 119
Msa1309870 MtrunA17_Chr3g0106251 31.783 258 145 7 208 457 52 286 7.82e-29 115
Msa1309870 MtrunA17_Chr1g0196851 27.729 458 275 17 2 435 45 470 1.04e-28 118
Msa1309870 MtrunA17_Chr2g0302851 34.171 199 118 2 241 439 252 437 2.02e-28 117
Msa1309870 MtrunA17_Chr6g0464091 25.486 463 302 17 2 445 14 452 5.69e-28 116
Msa1309870 MtrunA17_Chr8g0357361 34.328 201 112 5 207 401 63 249 5.37e-27 109
Msa1309870 MtrunA17_Chr8g0336261 36.913 149 78 3 279 427 1 133 1.34e-26 104
Msa1309870 MtrunA17_Chr2g0283041 27.368 475 283 19 5 450 6 447 1.97e-26 111
Msa1309870 MtrunA17_Chr5g0431431 30.640 297 157 12 136 420 84 343 1.38e-25 107
Msa1309870 MtrunA17_Chr8g0337371 69.014 71 22 0 199 269 392 462 1.55e-25 110
Msa1309870 MtrunA17_Chr4g0040691 32.870 216 126 4 231 441 234 435 3.73e-25 107
Msa1309870 MtrunA17_Chr7g0231631 30.627 271 147 9 207 460 9 255 4.28e-25 104
Msa1309870 MtrunA17_Chr5g0416821 24.547 497 298 18 3 460 11 469 4.31e-25 107
Msa1309870 MtrunA17_Chr6g0449971 58.228 79 33 0 389 467 2 80 8.02e-25 97.8
Msa1309870 MtrunA17_Chr6g0454231 29.699 266 119 9 206 460 6 214 1.50e-24 106
Msa1309870 MtrunA17_Chr2g0319731 27.948 458 280 17 4 440 23 451 2.27e-24 105
Msa1309870 MtrunA17_Chr4g0066141 38.667 150 80 4 323 460 198 347 3.54e-24 103
Msa1309870 MtrunA17_Chr2g0319761 27.273 462 278 17 5 441 7 435 1.86e-23 102
Msa1309870 MtrunA17_Chr2g0319801 26.856 458 285 16 4 440 6 434 3.10e-23 102
Msa1309870 MtrunA17_Chr4g0040711 31.183 186 116 2 258 441 260 435 1.72e-21 97.1
Msa1309870 MtrunA17_Chr5g0442501 25.938 320 204 11 3 305 2 305 1.46e-20 92.0
Msa1309870 MtrunA17_Chr4g0029161 26.490 453 262 20 5 441 11 408 1.97e-20 93.6
Msa1309870 MtrunA17_Chr3g0079721 27.225 191 130 3 95 277 99 288 2.14e-20 91.3
Msa1309870 MtrunA17_Chr2g0321331 33.898 177 89 5 267 441 94 244 3.19e-20 90.5
Msa1309870 MtrunA17_Chr1g0207881 38.806 134 73 4 332 460 251 380 4.34e-20 92.0
Msa1309870 MtrunA17_Chr2g0319791 27.233 459 280 20 5 440 7 434 8.48e-20 91.7
Msa1309870 MtrunA17_Chr8g0339611 43.846 130 68 2 1 127 1 128 5.54e-19 82.8
Msa1309870 MtrunA17_Chr5g0442551 26.718 262 165 7 95 348 52 294 1.28e-18 86.3
Msa1309870 MtrunA17_Chr7g0243731 46.753 77 41 0 332 408 2 78 1.31e-18 80.1
Msa1309870 MtrunA17_Chr6g0469961 37.143 140 78 3 168 299 27 164 6.32e-18 80.9
Msa1309870 MtrunA17_Chr2g0319751 31.636 275 166 10 173 440 652 911 9.45e-18 86.7
Msa1309870 MtrunA17_Chr2g0319751 26.415 477 237 25 5 440 7 410 2.30e-14 75.9
Msa1309870 MtrunA17_Chr7g0250021 25.846 325 204 12 3 308 9 315 2.34e-14 73.9
Msa1309870 MtrunA17_Chr6g0453981 29.932 147 88 4 169 303 61 204 5.09e-14 71.6
Msa1309870 MtrunA17_Chr6g0454391 68.571 35 11 0 355 389 13 47 2.29e-12 63.9
Msa1309870 MtrunA17_Chr6g0453941 27.778 162 102 5 169 318 113 271 9.48e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309870 AT4G01070.1 50.644 466 225 4 3 465 5 468 1.79e-166 478
Msa1309870 AT1G01420.1 47.210 466 240 5 3 465 5 467 1.91e-154 447
Msa1309870 AT1G01420.2 47.312 465 239 5 4 465 9 470 2.02e-154 447
Msa1309870 AT1G01390.2 45.690 464 249 3 4 465 23 485 5.18e-148 432
Msa1309870 AT1G01390.1 45.591 465 250 3 3 465 5 468 5.50e-148 431
Msa1309870 AT4G01070.2 45.954 346 180 5 3 345 5 346 1.90e-100 305
Msa1309870 AT3G50740.1 37.161 479 263 14 6 461 7 470 3.79e-93 291
Msa1309870 AT2G18570.1 37.100 469 276 13 6 463 5 465 4.35e-91 285
Msa1309870 AT4G36770.1 37.879 462 248 15 5 446 3 445 5.26e-87 274
Msa1309870 AT5G66690.1 36.383 470 251 13 6 451 7 452 2.44e-86 273
Msa1309870 AT5G26310.1 36.364 451 261 11 6 443 7 444 6.55e-84 266
Msa1309870 AT2G18560.1 39.314 379 210 8 95 463 7 375 3.22e-80 254
Msa1309870 AT3G16520.3 35.467 375 229 7 92 464 96 459 1.49e-77 249
Msa1309870 AT3G16520.2 35.574 357 217 7 92 446 96 441 3.37e-74 240
Msa1309870 AT3G16520.1 35.574 357 217 7 92 446 96 441 4.19e-74 240
Msa1309870 AT3G21750.1 31.393 481 286 15 5 460 3 464 4.09e-63 212
Msa1309870 AT2G29740.1 32.777 479 270 18 10 460 16 470 8.30e-63 211
Msa1309870 AT1G07250.1 30.103 485 297 16 1 460 1 468 1.12e-61 208
Msa1309870 AT1G07260.1 32.515 489 275 20 2 460 4 467 1.50e-61 208
Msa1309870 AT2G29750.1 31.276 486 287 19 2 460 4 469 1.44e-59 203
Msa1309870 AT4G15280.1 29.817 493 283 15 5 460 3 469 4.77e-59 201
Msa1309870 AT3G21800.1 32.678 407 223 13 85 457 79 468 8.95e-59 201
Msa1309870 AT4G15280.2 29.817 493 283 15 5 460 35 501 1.06e-58 201
Msa1309870 AT3G21790.1 33.957 374 208 11 111 460 116 474 2.03e-58 200
Msa1309870 AT4G15260.1 35.475 358 198 13 122 460 7 350 4.20e-58 196
Msa1309870 AT2G29730.1 30.335 478 292 15 3 460 2 458 9.24e-58 198
Msa1309870 AT2G16890.2 31.613 465 269 16 6 446 9 448 4.77e-57 196
Msa1309870 AT2G31750.1 30.917 469 268 16 17 463 19 453 4.52e-56 193
Msa1309870 AT2G31750.2 30.917 469 268 16 17 463 19 453 7.98e-56 193
Msa1309870 AT2G29710.1 29.325 474 284 15 11 460 12 458 1.04e-55 192
Msa1309870 AT5G14860.1 30.533 488 282 17 6 460 8 471 3.52e-55 191
Msa1309870 AT3G21780.1 30.533 488 281 16 5 460 3 464 9.84e-55 190
Msa1309870 AT1G07240.1 34.167 360 208 10 111 456 123 467 2.70e-54 189
Msa1309870 AT3G21760.1 32.997 397 215 14 94 457 95 473 5.33e-53 186
Msa1309870 AT4G34131.1 28.112 498 289 12 3 460 7 475 2.16e-52 184
Msa1309870 AT1G05675.1 29.350 477 291 13 1 460 1 448 2.25e-52 183
Msa1309870 AT2G15480.1 28.485 495 288 12 5 460 9 476 8.09e-51 180
Msa1309870 AT1G22340.1 28.543 494 291 17 6 463 13 480 3.02e-50 178
Msa1309870 AT1G10400.1 29.897 485 283 18 3 460 4 458 9.08e-50 176
Msa1309870 AT2G15480.2 28.515 505 285 14 5 460 9 486 2.19e-49 176
Msa1309870 AT5G12890.1 29.835 486 298 15 3 460 7 477 5.31e-49 175
Msa1309870 AT1G05680.1 28.571 483 289 13 1 461 1 449 6.70e-49 174
Msa1309870 AT1G22360.1 26.869 495 297 17 6 463 10 476 6.94e-49 174
Msa1309870 AT2G15490.1 37.218 266 146 6 207 460 220 476 9.30e-49 174
Msa1309870 AT3G53160.1 30.143 491 289 17 5 460 7 478 1.76e-48 174
Msa1309870 AT2G15490.3 37.218 266 143 6 207 460 220 473 1.80e-48 173
Msa1309870 AT2G16890.3 30.575 435 256 15 6 419 9 418 2.30e-48 172
Msa1309870 AT1G78270.1 29.140 477 274 15 6 446 13 461 3.57e-48 172
Msa1309870 AT2G36770.1 37.063 286 150 6 194 460 210 484 6.05e-48 172
Msa1309870 AT4G34138.1 35.955 267 143 6 207 460 223 474 8.55e-48 172
Msa1309870 AT1G22380.1 27.345 501 295 16 2 463 9 479 1.37e-47 171
Msa1309870 AT2G43820.1 30.079 379 207 9 101 457 97 439 2.85e-47 169
Msa1309870 AT2G31790.1 28.954 373 224 6 107 460 102 452 3.01e-47 169
Msa1309870 AT2G36780.1 36.996 273 142 5 207 460 223 484 1.09e-46 169
Msa1309870 AT1G05560.1 30.655 473 274 16 6 457 5 444 1.15e-46 168
Msa1309870 AT1G73880.1 28.931 477 285 16 6 458 14 460 1.77e-46 168
Msa1309870 AT1G05560.2 30.655 473 274 16 6 457 55 494 2.80e-46 168
Msa1309870 AT1G24100.1 29.039 489 268 18 6 460 11 454 2.96e-46 167
Msa1309870 AT2G36760.1 37.453 267 135 6 207 453 223 477 4.28e-46 167
Msa1309870 AT3G46680.1 33.333 339 206 9 125 460 124 445 5.96e-46 166
Msa1309870 AT1G22400.1 27.846 492 299 16 6 464 13 481 6.77e-46 166
Msa1309870 AT2G36800.1 36.996 273 142 5 207 460 222 483 1.03e-45 166
Msa1309870 AT4G34135.1 29.930 431 244 14 3 401 8 412 2.70e-45 165
Msa1309870 AT1G22360.2 26.667 495 286 17 6 463 10 464 3.39e-45 164
Msa1309870 AT2G30140.2 29.122 467 288 13 6 461 13 447 4.23e-45 164
Msa1309870 AT2G30140.1 28.782 476 279 14 6 461 13 448 4.36e-45 164
Msa1309870 AT5G05880.1 30.337 356 222 7 111 460 109 444 1.76e-44 162
Msa1309870 AT2G43840.1 27.869 488 273 16 6 463 7 445 1.98e-44 162
Msa1309870 AT2G36970.1 28.150 373 236 8 108 468 122 474 2.24e-44 162
Msa1309870 AT2G43840.2 27.869 488 273 16 6 463 7 445 2.45e-44 161
Msa1309870 AT3G11340.1 28.710 411 253 11 71 460 49 440 5.40e-44 160
Msa1309870 AT3G53150.1 37.063 286 137 7 207 460 231 505 5.50e-44 162
Msa1309870 AT3G46690.1 28.392 479 290 15 1 460 1 445 1.10e-43 160
Msa1309870 AT1G22370.2 28.184 479 275 16 6 448 13 458 1.41e-43 160
Msa1309870 AT2G36750.1 35.897 273 145 6 207 460 218 479 2.90e-43 159
Msa1309870 AT5G59580.1 31.507 365 224 10 111 468 108 453 2.72e-42 156
Msa1309870 AT2G30150.2 29.053 475 278 16 6 460 13 448 2.90e-42 156
Msa1309870 AT4G15490.1 29.787 376 224 11 106 463 112 465 3.08e-42 156
Msa1309870 AT5G59590.1 28.172 465 301 13 3 460 7 445 3.80e-42 155
Msa1309870 AT2G36790.1 35.192 287 156 5 193 460 208 483 5.75e-41 153
Msa1309870 AT2G30150.1 29.087 471 275 16 10 460 1 432 9.50e-41 151
Msa1309870 AT5G05860.1 35.254 295 173 8 169 461 166 444 1.20e-40 151
Msa1309870 AT4G15480.1 30.769 377 219 11 102 463 128 477 1.30e-40 152
Msa1309870 AT3G55700.1 29.706 340 217 9 124 460 126 446 1.53e-40 151
Msa1309870 AT1G22370.1 35.581 267 141 7 194 448 41 288 1.68e-40 147
Msa1309870 AT5G03490.1 28.274 481 298 15 3 467 16 465 2.02e-40 151
Msa1309870 AT5G17050.1 27.484 473 293 12 6 460 12 452 2.75e-40 150
Msa1309870 AT5G05870.1 29.805 359 225 10 111 461 112 451 4.18e-40 150
Msa1309870 AT1G05530.1 36.220 254 144 6 208 453 200 443 5.02e-40 150
Msa1309870 AT4G15550.1 31.653 357 217 11 108 453 122 462 5.83e-40 150
Msa1309870 AT2G28080.1 29.213 356 214 11 112 454 130 460 4.14e-39 148
Msa1309870 AT5G65550.1 28.918 453 273 15 5 435 8 433 8.47e-39 147
Msa1309870 AT5G05900.1 30.252 357 216 9 111 460 113 443 8.94e-39 146
Msa1309870 AT2G23250.1 26.316 456 291 11 17 460 9 431 1.60e-38 145
Msa1309870 AT2G23260.1 30.275 327 191 8 146 457 142 446 1.99e-38 145
Msa1309870 AT4G15500.1 29.491 373 228 11 106 463 109 461 2.57e-38 145
Msa1309870 AT1G51210.1 28.982 452 264 15 6 439 20 432 3.01e-38 144
Msa1309870 AT3G46700.1 29.213 356 229 9 111 461 104 441 3.08e-38 145
Msa1309870 AT3G46660.1 30.387 362 216 12 111 460 114 451 1.48e-37 143
Msa1309870 AT3G55710.1 31.412 347 210 11 124 461 124 451 1.72e-37 143
Msa1309870 AT3G02100.1 25.156 481 296 16 6 460 13 455 8.01e-37 141
Msa1309870 AT5G38040.1 31.124 347 202 12 126 460 124 445 8.02e-37 141
Msa1309870 AT1G30530.1 26.419 458 297 12 6 453 12 439 1.17e-36 140
Msa1309870 AT5G05890.1 28.409 352 234 5 111 460 113 448 4.69e-36 139
Msa1309870 AT1G06000.1 34.866 261 155 5 207 460 177 429 5.51e-36 138
Msa1309870 AT5G49690.1 28.908 467 265 19 2 441 6 432 1.46e-35 137
Msa1309870 AT3G46670.1 27.572 486 289 19 3 467 8 451 1.66e-35 137
Msa1309870 AT3G46650.1 27.097 465 293 13 1 460 5 428 1.90e-35 137
Msa1309870 AT3G21560.1 26.884 398 249 11 84 463 98 471 5.38e-35 136
Msa1309870 AT2G26480.1 29.692 357 224 8 112 460 104 441 1.07e-34 135
Msa1309870 AT5G38010.1 29.670 364 219 10 109 460 111 449 2.28e-34 134
Msa1309870 AT4G14090.1 27.419 372 236 10 96 457 101 448 2.92e-34 134
Msa1309870 AT2G22590.1 26.834 477 284 20 5 450 14 456 4.80e-34 133
Msa1309870 AT3G46720.1 29.577 355 219 8 111 460 108 436 6.27e-34 133
Msa1309870 AT5G17030.1 26.652 469 287 16 6 453 12 444 6.33e-34 133
Msa1309870 AT5G17040.2 35.354 198 109 3 256 453 148 326 5.57e-31 122
Msa1309870 AT5G17040.1 35.354 198 109 3 256 453 250 428 6.48e-31 124
Msa1309870 AT3G22250.1 32.959 267 136 12 190 434 190 435 1.23e-30 124
Msa1309870 AT4G27570.1 26.898 461 279 14 5 445 6 428 4.77e-29 119
Msa1309870 AT5G53990.1 27.494 451 284 13 1 441 1 418 1.25e-28 118
Msa1309870 AT1G64910.1 26.134 463 275 14 1 441 1 418 1.33e-28 117
Msa1309870 AT4G27560.1 26.374 455 289 13 5 445 6 428 8.43e-27 112
Msa1309870 AT5G37950.2 30.769 273 166 10 110 378 84 337 1.06e-26 110
Msa1309870 AT3G29630.1 26.974 456 283 15 1 441 1 421 1.38e-26 112
Msa1309870 AT5G54010.1 25.870 460 288 14 1 442 1 425 2.00e-25 108
Msa1309870 AT5G37950.1 29.537 281 165 10 110 378 84 343 2.06e-25 107
Msa1309870 AT3G29630.2 26.374 455 261 15 1 441 1 395 2.25e-24 105
Msa1309870 AT1G50580.1 24.268 478 316 15 1 466 1 444 7.14e-24 104
Msa1309870 AT2G22930.1 25.217 460 291 12 1 445 1 422 1.07e-23 103
Msa1309870 AT4G09500.2 25.764 458 283 14 1 441 1 418 1.62e-22 100
Msa1309870 AT1G64920.1 26.898 461 286 16 1 445 1 426 7.46e-22 98.2
Msa1309870 AT5G54060.1 28.517 263 168 6 194 451 206 453 7.36e-21 95.5
Msa1309870 AT4G09500.1 31.285 179 111 2 265 441 225 393 2.30e-19 90.5
Msa1309870 AT4G34135.2 25.826 333 201 13 3 303 8 326 6.06e-15 76.3

Find 108 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAAGTCCTTAACTTTA+AGG 0.108965 8_4:-6343395 Msa1309870:CDS
TTGGTTGGCGTTTGGATAAT+TGG 0.222898 8_4:+6342976 None:intergenic
TGAGTAATCATAAATTCTTA+TGG 0.245563 8_4:-6342813 Msa1309870:CDS
CTATTTACTCAAGTTGAATA+AGG 0.262859 8_4:-6343250 Msa1309870:CDS
ATGCCATTCTGATTAACTTT+TGG 0.292082 8_4:+6342484 None:intergenic
ACAAATTAATGAGTTGGCTT+TGG 0.296705 8_4:-6342845 Msa1309870:CDS
ATTAGCATCATCACCGGATT+TGG 0.304032 8_4:+6342957 None:intergenic
TAATGAGTTGGCTTTGGGTT+TGG 0.311613 8_4:-6342839 Msa1309870:CDS
CACCGGATTTGGTTGGCGTT+TGG 0.314003 8_4:+6342968 None:intergenic
AGCAATTGATGCACTAGATT+TGG 0.316283 8_4:-6343340 Msa1309870:CDS
CAAATTAATGAGTTGGCTTT+GGG 0.339481 8_4:-6342844 Msa1309870:CDS
GAGTAATCATAAATTCTTAT+GGG 0.342858 8_4:-6342812 Msa1309870:CDS
CTCTTGGAGAATTGAAGAAT+TGG 0.343043 8_4:+6343633 None:intergenic
GGTAGGTCTTTGGAGTTAAC+TGG 0.353088 8_4:+6343486 None:intergenic
AATCCCTTGTGGTAGGTCTT+TGG 0.359244 8_4:+6343476 None:intergenic
TCTTCTGTGAGTGCTTCTAT+AGG 0.359525 8_4:+6343033 None:intergenic
AAGGACACCCTTTGTTGCCT+TGG 0.364404 8_4:-6343376 Msa1309870:CDS
ACATGCTTCATTCCCTCACT+TGG 0.377424 8_4:-6343579 Msa1309870:CDS
AAAGTACAGCTGATGTTTGA+TGG 0.389406 8_4:+6343516 None:intergenic
AGCACTCAAGTGGAGAAATA+TGG 0.399129 8_4:-6342311 Msa1309870:CDS
ATTCATATTGCAGTTGTTCC+AGG 0.400348 8_4:-6343678 Msa1309870:CDS
TCAGAATGGCATTGTGGAAA+AGG 0.409619 8_4:-6342473 Msa1309870:CDS
ATCCAAACGCCAACCAAATC+CGG 0.420916 8_4:-6342970 Msa1309870:CDS
CCAGGCTGTGTACCGATTCA+TGG 0.420925 8_4:-6343183 Msa1309870:CDS
CCTTAAAGTTAAGGACTTCA+AGG 0.421837 8_4:+6343395 None:intergenic
AAATCCGGTGATGATGCTAA+TGG 0.422774 8_4:-6342955 Msa1309870:CDS
AAAGGGTGTCCTTAAAGTTA+AGG 0.425431 8_4:+6343386 None:intergenic
AGCTTCCTAGAAATTGAAAA+AGG 0.436264 8_4:-6343057 Msa1309870:CDS
GACAAAGTGGTGACTGAAGC+AGG 0.441238 8_4:+6343282 None:intergenic
AAGCATGTGACATGAAAGTA+TGG 0.442050 8_4:+6343594 None:intergenic
TCTTGGAGAATTGAAGAATT+GGG 0.442083 8_4:+6343634 None:intergenic
TTCAAGGCCTCATGTATAGA+TGG 0.444057 8_4:+6343411 None:intergenic
GCAAGAACAAATTAATGAGT+TGG 0.450789 8_4:-6342851 Msa1309870:CDS
GACACCCTTTGTTGCCTTGG+TGG 0.451834 8_4:-6343373 Msa1309870:CDS
ATTGCAGTTGTTCCAGGTGT+TGG 0.453208 8_4:-6343672 Msa1309870:CDS
ACACAGCCTGGTATTTGAAT+AGG 0.459023 8_4:+6343195 None:intergenic
AACCCTGATGTTTATGCTGT+TGG 0.459273 8_4:-6343000 Msa1309870:CDS
GGTCCAACAGCATAAACATC+AGG 0.461123 8_4:+6342997 None:intergenic
GGTTCTTGACTCACTGTGGT+TGG 0.471970 8_4:-6342621 Msa1309870:CDS
ATTGAAGAATTGGGAATAAG+TGG 0.477711 8_4:+6343643 None:intergenic
CTGTGTACCGATTCATGGTC+GGG 0.478035 8_4:-6343178 Msa1309870:CDS
CCTGGTATTTGAATAGGCTC+TGG 0.480289 8_4:+6343201 None:intergenic
AATAGTGCACATAAAGATGA+TGG 0.484942 8_4:-6342361 Msa1309870:CDS
ATGAAGCTGAACAAGTCTCT+TGG 0.486185 8_4:+6343617 None:intergenic
CTTCGTCACAGTTCAGTTGG+TGG 0.494250 8_4:-6342643 Msa1309870:CDS
TTCGTCACAGTTCAGTTGGT+GGG 0.494754 8_4:-6342642 Msa1309870:CDS
ATAGAAGCACTCACAGAAGA+AGG 0.495380 8_4:-6343030 Msa1309870:CDS
GCACTCACAGAAGAAGGAAA+TGG 0.510583 8_4:-6343024 Msa1309870:CDS
TGTCTCATGGAAGGGGAAGA+AGG 0.511963 8_4:-6342427 Msa1309870:CDS
AATAGAGGCCATGTGATTAG+TGG 0.513713 8_4:+6342565 None:intergenic
AAGGGATGGTTATTCCATCA+TGG 0.515871 8_4:-6342684 Msa1309870:CDS
GTTCTCTGCTCAGCAAATAG+AGG 0.518937 8_4:+6342550 None:intergenic
CCATGAATCGGTACACAGCC+TGG 0.531308 8_4:+6343183 None:intergenic
GCTGAGTGAAGGACTAAAAG+TGG 0.535351 8_4:-6342515 Msa1309870:CDS
ATCCTTCGTCACAGTTCAGT+TGG 0.535373 8_4:-6342646 Msa1309870:CDS
ACAAGATCCCGACCATGAAT+CGG 0.539333 8_4:+6343171 None:intergenic
AATCCGGTGATGATGCTAAT+GGG 0.539361 8_4:-6342954 Msa1309870:CDS
TTTCTCAATTAGCACTCAAG+TGG 0.540414 8_4:-6342321 Msa1309870:CDS
CATGCTTCATTCCCTCACTT+GGG 0.549905 8_4:-6343578 Msa1309870:CDS
TCAACCACCAAGGCAACAAA+GGG 0.550478 8_4:+6343369 None:intergenic
TAATCAAGTGTCTCATGGAA+GGG 0.552027 8_4:-6342435 Msa1309870:CDS
AGGCCAAAAGTTAATCAGAA+TGG 0.552909 8_4:-6342487 Msa1309870:CDS
CACCAACTGAACTGTGACGA+AGG 0.554137 8_4:+6342644 None:intergenic
CCAGAGCCTATTCAAATACC+AGG 0.555903 8_4:-6343201 Msa1309870:CDS
GCAGCATTGGCTGTACTACT+TGG 0.556270 8_4:+6342778 None:intergenic
TGAATCTGTGGTGCCCATGA+TGG 0.558805 8_4:+6342670 None:intergenic
GACTTGATCTATCTTGAGCT+AGG 0.560643 8_4:+6343145 None:intergenic
TTAATCAAGTGTCTCATGGA+AGG 0.560671 8_4:-6342436 Msa1309870:CDS
GCATCATCACCGGATTTGGT+TGG 0.562598 8_4:+6342961 None:intergenic
ATCAACCACCAAGGCAACAA+AGG 0.564466 8_4:+6343368 None:intergenic
AATCAAGTGTCTCATGGAAG+GGG 0.568762 8_4:-6342434 Msa1309870:CDS
GCTGTGTACCGATTCATGGT+CGG 0.569999 8_4:-6343179 Msa1309870:CDS
TGCTGAAAGATATGCAGCAT+TGG 0.570963 8_4:+6342765 None:intergenic
TGTTTGATGGAAGAGTTTCA+AGG 0.573400 8_4:+6343529 None:intergenic
TCATGGAAGGGGAAGAAGGT+GGG 0.576595 8_4:-6342423 Msa1309870:CDS
AGGGATGGTTATTCCATCAT+GGG 0.579862 8_4:-6342683 Msa1309870:CDS
AGAGTTAATCAAGTGTCTCA+TGG 0.583880 8_4:-6342440 Msa1309870:CDS
GAGAACAAAGGAACAAGGGA+TGG 0.585761 8_4:-6342698 Msa1309870:CDS
AGGTCTTTGGAGTTAACTGG+TGG 0.596139 8_4:+6343489 None:intergenic
CAACCCATTAGCATCATCAC+CGG 0.596517 8_4:+6342951 None:intergenic
CTAAAGCAATCCCTTGTGGT+AGG 0.602189 8_4:+6343469 None:intergenic
ATAGAAGTATGAAGACAAAG+TGG 0.609041 8_4:+6343269 None:intergenic
GTTGGGAGAGACCCAAGTGA+GGG 0.615202 8_4:+6343567 None:intergenic
CTCATGGAAGGGGAAGAAGG+TGG 0.618223 8_4:-6342424 Msa1309870:CDS
CTGAGTGAAGGACTAAAAGT+GGG 0.620969 8_4:-6342514 Msa1309870:CDS
TGCTGAGCAGAGAACGAATG+CGG 0.621101 8_4:-6342542 Msa1309870:CDS
GTTCTCTCTAAGAACCCAGA+AGG 0.622171 8_4:+6342715 None:intergenic
AGTTAATCAGAATGGCATTG+TGG 0.622926 8_4:-6342479 Msa1309870:CDS
AAGTGGCTATATCCAACACC+TGG 0.623193 8_4:+6343660 None:intergenic
TTAGAGAGAACAAAGGAACA+AGG 0.625423 8_4:-6342703 Msa1309870:CDS
TGAAGCAGGAAAGTAAACAT+AGG 0.627209 8_4:+6343296 None:intergenic
ACGCTTGAGAGTGTGTTGCA+TGG 0.636181 8_4:-6342592 Msa1309870:CDS
GTTGAAGTGTCTGACATGGT+TGG 0.640715 8_4:-6342932 Msa1309870:CDS
TAGAGAGAACAAAGGAACAA+GGG 0.641990 8_4:-6342702 Msa1309870:CDS
GGTGGGTTCTTGACTCACTG+TGG 0.646555 8_4:-6342625 Msa1309870:CDS
GTCCAACAGCATAAACATCA+GGG 0.649647 8_4:+6342998 None:intergenic
CTCACTGCCATCTATACATG+AGG 0.650187 8_4:-6343418 Msa1309870:CDS
AAGGACTAAAAGTGGGACTG+AGG 0.651473 8_4:-6342507 Msa1309870:CDS
AGTTGGGAGAGACCCAAGTG+AGG 0.662000 8_4:+6343566 None:intergenic
GAAACATACAAAACTGAACA+AGG 0.662072 8_4:+6342898 None:intergenic
AACTCCAAAGACCTACCACA+AGG 0.676479 8_4:-6343480 Msa1309870:CDS
TGGGTTCTTAGAGAGAACAA+AGG 0.676876 8_4:-6342710 Msa1309870:CDS
TGCTAATGAATCAACCACCA+AGG 0.677134 8_4:+6343359 None:intergenic
AGTGCTAAAGCAATCCCTTG+TGG 0.682671 8_4:+6343465 None:intergenic
ATGGGTTGAAGTGTCTGACA+TGG 0.682760 8_4:-6342936 Msa1309870:CDS
TGACGAAGGATTTGAATCTG+TGG 0.698330 8_4:+6342658 None:intergenic
ACTCCAAAGACCTACCACAA+GGG 0.717083 8_4:-6343479 Msa1309870:CDS
ATGGTGTGCCACTAATCACA+TGG 0.720690 8_4:-6342573 Msa1309870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAGTAATCATAAATTCTTA+TGG - chr8_4:6343183-6343202 Msa1309870:CDS 20.0%
!! GAGTAATCATAAATTCTTAT+GGG - chr8_4:6343184-6343203 Msa1309870:CDS 20.0%
!! TGAGTAATCATAAATTCTTA+TGG - chr8_4:6343183-6343202 Msa1309870:CDS 20.0%
!! GAGTAATCATAAATTCTTAT+GGG - chr8_4:6343184-6343203 Msa1309870:CDS 20.0%
!!! GGATTTTTTTTGAATCAGTT+GGG + chr8_4:6342449-6342468 None:intergenic 25.0%
!!! AGGATTTTTTTTGAATCAGT+TGG + chr8_4:6342450-6342469 None:intergenic 25.0%
!!! CTATTTACTCAAGTTGAATA+AGG - chr8_4:6342746-6342765 Msa1309870:CDS 25.0%
! TAAGAATACCATCAAAAAGA+CGG + chr8_4:6342914-6342933 None:intergenic 25.0%
!!! TCAGTTTTGTATGTTTCTTT+TGG - chr8_4:6343104-6343123 Msa1309870:CDS 25.0%
!!! CAGTTTTGTATGTTTCTTTT+GGG - chr8_4:6343105-6343124 Msa1309870:CDS 25.0%
! CAGAAGGTAAAAATTGTAAA+GGG + chr8_4:6343268-6343287 None:intergenic 25.0%
!! CTTTACAATTTTTACCTTCT+GGG - chr8_4:6343267-6343286 Msa1309870:CDS 25.0%
!!! GGATTTTTTTTGAATCAGTT+GGG + chr8_4:6342449-6342468 None:intergenic 25.0%
!!! AGGATTTTTTTTGAATCAGT+TGG + chr8_4:6342450-6342469 None:intergenic 25.0%
!!! CTATTTACTCAAGTTGAATA+AGG - chr8_4:6342746-6342765 Msa1309870:CDS 25.0%
! TAAGAATACCATCAAAAAGA+CGG + chr8_4:6342914-6342933 None:intergenic 25.0%
!!! TCAGTTTTGTATGTTTCTTT+TGG - chr8_4:6343104-6343123 Msa1309870:CDS 25.0%
!!! CAGTTTTGTATGTTTCTTTT+GGG - chr8_4:6343105-6343124 Msa1309870:CDS 25.0%
! CAGAAGGTAAAAATTGTAAA+GGG + chr8_4:6343268-6343287 None:intergenic 25.0%
!! CTTTACAATTTTTACCTTCT+GGG - chr8_4:6343267-6343286 Msa1309870:CDS 25.0%
ATTGAAGAATTGGGAATAAG+TGG + chr8_4:6342356-6342375 None:intergenic 30.0%
TCTTGGAGAATTGAAGAATT+GGG + chr8_4:6342365-6342384 None:intergenic 30.0%
! ATAGAAGTATGAAGACAAAG+TGG + chr8_4:6342730-6342749 None:intergenic 30.0%
! GAAAAATTCCGTCTTTTTGA+TGG - chr8_4:6342903-6342922 Msa1309870:CDS 30.0%
AGCTTCCTAGAAATTGAAAA+AGG - chr8_4:6342939-6342958 Msa1309870:CDS 30.0%
!!! TAGGACCTTTTTCAATTTCT+AGG + chr8_4:6342947-6342966 None:intergenic 30.0%
GAAACATACAAAACTGAACA+AGG + chr8_4:6343101-6343120 None:intergenic 30.0%
GCAAGAACAAATTAATGAGT+TGG - chr8_4:6343145-6343164 Msa1309870:CDS 30.0%
! ACAAATTAATGAGTTGGCTT+TGG - chr8_4:6343151-6343170 Msa1309870:CDS 30.0%
!! CAAATTAATGAGTTGGCTTT+GGG - chr8_4:6343152-6343171 Msa1309870:CDS 30.0%
CCAGAAGGTAAAAATTGTAA+AGG + chr8_4:6343269-6343288 None:intergenic 30.0%
! CCTTTACAATTTTTACCTTC+TGG - chr8_4:6343266-6343285 Msa1309870:CDS 30.0%
! ATGCCATTCTGATTAACTTT+TGG + chr8_4:6343515-6343534 None:intergenic 30.0%
AATAGTGCACATAAAGATGA+TGG - chr8_4:6343635-6343654 Msa1309870:CDS 30.0%
ATTGAAGAATTGGGAATAAG+TGG + chr8_4:6342356-6342375 None:intergenic 30.0%
TCTTGGAGAATTGAAGAATT+GGG + chr8_4:6342365-6342384 None:intergenic 30.0%
! ATAGAAGTATGAAGACAAAG+TGG + chr8_4:6342730-6342749 None:intergenic 30.0%
! GAAAAATTCCGTCTTTTTGA+TGG - chr8_4:6342903-6342922 Msa1309870:CDS 30.0%
AGCTTCCTAGAAATTGAAAA+AGG - chr8_4:6342939-6342958 Msa1309870:CDS 30.0%
!!! TAGGACCTTTTTCAATTTCT+AGG + chr8_4:6342947-6342966 None:intergenic 30.0%
GAAACATACAAAACTGAACA+AGG + chr8_4:6343101-6343120 None:intergenic 30.0%
GCAAGAACAAATTAATGAGT+TGG - chr8_4:6343145-6343164 Msa1309870:CDS 30.0%
! ACAAATTAATGAGTTGGCTT+TGG - chr8_4:6343151-6343170 Msa1309870:CDS 30.0%
!! CAAATTAATGAGTTGGCTTT+GGG - chr8_4:6343152-6343171 Msa1309870:CDS 30.0%
CCAGAAGGTAAAAATTGTAA+AGG + chr8_4:6343269-6343288 None:intergenic 30.0%
! CCTTTACAATTTTTACCTTC+TGG - chr8_4:6343266-6343285 Msa1309870:CDS 30.0%
! ATGCCATTCTGATTAACTTT+TGG + chr8_4:6343515-6343534 None:intergenic 30.0%
AATAGTGCACATAAAGATGA+TGG - chr8_4:6343635-6343654 Msa1309870:CDS 30.0%
ATTCATATTGCAGTTGTTCC+AGG - chr8_4:6342318-6342337 Msa1309870:CDS 35.0%
CTCTTGGAGAATTGAAGAAT+TGG + chr8_4:6342366-6342385 None:intergenic 35.0%
AAGCATGTGACATGAAAGTA+TGG + chr8_4:6342405-6342424 None:intergenic 35.0%
TGTTTGATGGAAGAGTTTCA+AGG + chr8_4:6342470-6342489 None:intergenic 35.0%
AAAGTACAGCTGATGTTTGA+TGG + chr8_4:6342483-6342502 None:intergenic 35.0%
CCTTAAAGTTAAGGACTTCA+AGG + chr8_4:6342604-6342623 None:intergenic 35.0%
CCTTGAAGTCCTTAACTTTA+AGG - chr8_4:6342601-6342620 Msa1309870:CDS 35.0%
!! AAAGGGTGTCCTTAAAGTTA+AGG + chr8_4:6342613-6342632 None:intergenic 35.0%
AGCAATTGATGCACTAGATT+TGG - chr8_4:6342656-6342675 Msa1309870:CDS 35.0%
TGAAGCAGGAAAGTAAACAT+AGG + chr8_4:6342703-6342722 None:intergenic 35.0%
!! TTGTATGTTTCTTTTGGGAG+TGG - chr8_4:6343110-6343129 Msa1309870:CDS 35.0%
TTAGAGAGAACAAAGGAACA+AGG - chr8_4:6343293-6343312 Msa1309870:CDS 35.0%
TAGAGAGAACAAAGGAACAA+GGG - chr8_4:6343294-6343313 Msa1309870:CDS 35.0%
AGGCCAAAAGTTAATCAGAA+TGG - chr8_4:6343509-6343528 Msa1309870:CDS 35.0%
AGTTAATCAGAATGGCATTG+TGG - chr8_4:6343517-6343536 Msa1309870:CDS 35.0%
AGAGTTAATCAAGTGTCTCA+TGG - chr8_4:6343556-6343575 Msa1309870:CDS 35.0%
TTAATCAAGTGTCTCATGGA+AGG - chr8_4:6343560-6343579 Msa1309870:CDS 35.0%
TAATCAAGTGTCTCATGGAA+GGG - chr8_4:6343561-6343580 Msa1309870:CDS 35.0%
GAAACTGCGCAAAAATATGA+AGG - chr8_4:6343595-6343614 Msa1309870:CDS 35.0%
TTTCTCAATTAGCACTCAAG+TGG - chr8_4:6343675-6343694 Msa1309870:CDS 35.0%
ATTCATATTGCAGTTGTTCC+AGG - chr8_4:6342318-6342337 Msa1309870:CDS 35.0%
CTCTTGGAGAATTGAAGAAT+TGG + chr8_4:6342366-6342385 None:intergenic 35.0%
AAGCATGTGACATGAAAGTA+TGG + chr8_4:6342405-6342424 None:intergenic 35.0%
TGTTTGATGGAAGAGTTTCA+AGG + chr8_4:6342470-6342489 None:intergenic 35.0%
AAAGTACAGCTGATGTTTGA+TGG + chr8_4:6342483-6342502 None:intergenic 35.0%
CCTTAAAGTTAAGGACTTCA+AGG + chr8_4:6342604-6342623 None:intergenic 35.0%
CCTTGAAGTCCTTAACTTTA+AGG - chr8_4:6342601-6342620 Msa1309870:CDS 35.0%
!! AAAGGGTGTCCTTAAAGTTA+AGG + chr8_4:6342613-6342632 None:intergenic 35.0%
AGCAATTGATGCACTAGATT+TGG - chr8_4:6342656-6342675 Msa1309870:CDS 35.0%
TGAAGCAGGAAAGTAAACAT+AGG + chr8_4:6342703-6342722 None:intergenic 35.0%
!! TTGTATGTTTCTTTTGGGAG+TGG - chr8_4:6343110-6343129 Msa1309870:CDS 35.0%
TTAGAGAGAACAAAGGAACA+AGG - chr8_4:6343293-6343312 Msa1309870:CDS 35.0%
TAGAGAGAACAAAGGAACAA+GGG - chr8_4:6343294-6343313 Msa1309870:CDS 35.0%
AGGCCAAAAGTTAATCAGAA+TGG - chr8_4:6343509-6343528 Msa1309870:CDS 35.0%
AGTTAATCAGAATGGCATTG+TGG - chr8_4:6343517-6343536 Msa1309870:CDS 35.0%
AGAGTTAATCAAGTGTCTCA+TGG - chr8_4:6343556-6343575 Msa1309870:CDS 35.0%
TTAATCAAGTGTCTCATGGA+AGG - chr8_4:6343560-6343579 Msa1309870:CDS 35.0%
TAATCAAGTGTCTCATGGAA+GGG - chr8_4:6343561-6343580 Msa1309870:CDS 35.0%
GAAACTGCGCAAAAATATGA+AGG - chr8_4:6343595-6343614 Msa1309870:CDS 35.0%
TTTCTCAATTAGCACTCAAG+TGG - chr8_4:6343675-6343694 Msa1309870:CDS 35.0%
ATGAAGCTGAACAAGTCTCT+TGG + chr8_4:6342382-6342401 None:intergenic 40.0%
TTCAAGGCCTCATGTATAGA+TGG + chr8_4:6342588-6342607 None:intergenic 40.0%
TGCTAATGAATCAACCACCA+AGG + chr8_4:6342640-6342659 None:intergenic 40.0%
ACACAGCCTGGTATTTGAAT+AGG + chr8_4:6342804-6342823 None:intergenic 40.0%
GACTTGATCTATCTTGAGCT+AGG + chr8_4:6342854-6342873 None:intergenic 40.0%
TCTTCTGTGAGTGCTTCTAT+AGG + chr8_4:6342966-6342985 None:intergenic 40.0%
!! ATAGAAGCACTCACAGAAGA+AGG - chr8_4:6342966-6342985 Msa1309870:CDS 40.0%
AACCCTGATGTTTATGCTGT+TGG - chr8_4:6342996-6343015 Msa1309870:CDS 40.0%
GTCCAACAGCATAAACATCA+GGG + chr8_4:6343001-6343020 None:intergenic 40.0%
TTGGTTGGCGTTTGGATAAT+TGG + chr8_4:6343023-6343042 None:intergenic 40.0%
ATTAGCATCATCACCGGATT+TGG + chr8_4:6343042-6343061 None:intergenic 40.0%
! AAATCCGGTGATGATGCTAA+TGG - chr8_4:6343041-6343060 Msa1309870:CDS 40.0%
! AATCCGGTGATGATGCTAAT+GGG - chr8_4:6343042-6343061 Msa1309870:CDS 40.0%
!! TATGTTTCTTTTGGGAGTGG+TGG - chr8_4:6343113-6343132 Msa1309870:CDS 40.0%
!! TAATGAGTTGGCTTTGGGTT+TGG - chr8_4:6343157-6343176 Msa1309870:CDS 40.0%
TGCTGAAAGATATGCAGCAT+TGG + chr8_4:6343234-6343253 None:intergenic 40.0%
TGGGTTCTTAGAGAGAACAA+AGG - chr8_4:6343286-6343305 Msa1309870:CDS 40.0%
AAGGGATGGTTATTCCATCA+TGG - chr8_4:6343312-6343331 Msa1309870:CDS 40.0%
AGGGATGGTTATTCCATCAT+GGG - chr8_4:6343313-6343332 Msa1309870:CDS 40.0%
TGACGAAGGATTTGAATCTG+TGG + chr8_4:6343341-6343360 None:intergenic 40.0%
AATAGAGGCCATGTGATTAG+TGG + chr8_4:6343434-6343453 None:intergenic 40.0%
CTGAGTGAAGGACTAAAAGT+GGG - chr8_4:6343482-6343501 Msa1309870:CDS 40.0%
TCAGAATGGCATTGTGGAAA+AGG - chr8_4:6343523-6343542 Msa1309870:CDS 40.0%
AATCAAGTGTCTCATGGAAG+GGG - chr8_4:6343562-6343581 Msa1309870:CDS 40.0%
AGCACTCAAGTGGAGAAATA+TGG - chr8_4:6343685-6343704 Msa1309870:CDS 40.0%
ATGAAGCTGAACAAGTCTCT+TGG + chr8_4:6342382-6342401 None:intergenic 40.0%
TTCAAGGCCTCATGTATAGA+TGG + chr8_4:6342588-6342607 None:intergenic 40.0%
TGCTAATGAATCAACCACCA+AGG + chr8_4:6342640-6342659 None:intergenic 40.0%
ACACAGCCTGGTATTTGAAT+AGG + chr8_4:6342804-6342823 None:intergenic 40.0%
GACTTGATCTATCTTGAGCT+AGG + chr8_4:6342854-6342873 None:intergenic 40.0%
TCTTCTGTGAGTGCTTCTAT+AGG + chr8_4:6342966-6342985 None:intergenic 40.0%
!! ATAGAAGCACTCACAGAAGA+AGG - chr8_4:6342966-6342985 Msa1309870:CDS 40.0%
AACCCTGATGTTTATGCTGT+TGG - chr8_4:6342996-6343015 Msa1309870:CDS 40.0%
GTCCAACAGCATAAACATCA+GGG + chr8_4:6343001-6343020 None:intergenic 40.0%
TTGGTTGGCGTTTGGATAAT+TGG + chr8_4:6343023-6343042 None:intergenic 40.0%
ATTAGCATCATCACCGGATT+TGG + chr8_4:6343042-6343061 None:intergenic 40.0%
! AAATCCGGTGATGATGCTAA+TGG - chr8_4:6343041-6343060 Msa1309870:CDS 40.0%
! AATCCGGTGATGATGCTAAT+GGG - chr8_4:6343042-6343061 Msa1309870:CDS 40.0%
!! TATGTTTCTTTTGGGAGTGG+TGG - chr8_4:6343113-6343132 Msa1309870:CDS 40.0%
!! TAATGAGTTGGCTTTGGGTT+TGG - chr8_4:6343157-6343176 Msa1309870:CDS 40.0%
TGCTGAAAGATATGCAGCAT+TGG + chr8_4:6343234-6343253 None:intergenic 40.0%
TGGGTTCTTAGAGAGAACAA+AGG - chr8_4:6343286-6343305 Msa1309870:CDS 40.0%
AAGGGATGGTTATTCCATCA+TGG - chr8_4:6343312-6343331 Msa1309870:CDS 40.0%
AGGGATGGTTATTCCATCAT+GGG - chr8_4:6343313-6343332 Msa1309870:CDS 40.0%
TGACGAAGGATTTGAATCTG+TGG + chr8_4:6343341-6343360 None:intergenic 40.0%
AATAGAGGCCATGTGATTAG+TGG + chr8_4:6343434-6343453 None:intergenic 40.0%
CTGAGTGAAGGACTAAAAGT+GGG - chr8_4:6343482-6343501 Msa1309870:CDS 40.0%
TCAGAATGGCATTGTGGAAA+AGG - chr8_4:6343523-6343542 Msa1309870:CDS 40.0%
AATCAAGTGTCTCATGGAAG+GGG - chr8_4:6343562-6343581 Msa1309870:CDS 40.0%
AGCACTCAAGTGGAGAAATA+TGG - chr8_4:6343685-6343704 Msa1309870:CDS 40.0%
ATTGCAGTTGTTCCAGGTGT+TGG - chr8_4:6342324-6342343 Msa1309870:CDS 45.0%
AAGTGGCTATATCCAACACC+TGG + chr8_4:6342339-6342358 None:intergenic 45.0%
ACATGCTTCATTCCCTCACT+TGG - chr8_4:6342417-6342436 Msa1309870:CDS 45.0%
CATGCTTCATTCCCTCACTT+GGG - chr8_4:6342418-6342437 Msa1309870:CDS 45.0%
!! AGGTCTTTGGAGTTAACTGG+TGG + chr8_4:6342510-6342529 None:intergenic 45.0%
!! GGTAGGTCTTTGGAGTTAAC+TGG + chr8_4:6342513-6342532 None:intergenic 45.0%
AACTCCAAAGACCTACCACA+AGG - chr8_4:6342516-6342535 Msa1309870:CDS 45.0%
ACTCCAAAGACCTACCACAA+GGG - chr8_4:6342517-6342536 Msa1309870:CDS 45.0%
AATCCCTTGTGGTAGGTCTT+TGG + chr8_4:6342523-6342542 None:intergenic 45.0%
CTAAAGCAATCCCTTGTGGT+AGG + chr8_4:6342530-6342549 None:intergenic 45.0%
AGTGCTAAAGCAATCCCTTG+TGG + chr8_4:6342534-6342553 None:intergenic 45.0%
CTCACTGCCATCTATACATG+AGG - chr8_4:6342578-6342597 Msa1309870:CDS 45.0%
TCAACCACCAAGGCAACAAA+GGG + chr8_4:6342630-6342649 None:intergenic 45.0%
ATCAACCACCAAGGCAACAA+AGG + chr8_4:6342631-6342650 None:intergenic 45.0%
CCTGGTATTTGAATAGGCTC+TGG + chr8_4:6342798-6342817 None:intergenic 45.0%
CCAGAGCCTATTCAAATACC+AGG - chr8_4:6342795-6342814 Msa1309870:CDS 45.0%
ACAAGATCCCGACCATGAAT+CGG + chr8_4:6342828-6342847 None:intergenic 45.0%
GCACTCACAGAAGAAGGAAA+TGG - chr8_4:6342972-6342991 Msa1309870:CDS 45.0%
GGTCCAACAGCATAAACATC+AGG + chr8_4:6343002-6343021 None:intergenic 45.0%
ATCCAAACGCCAACCAAATC+CGG - chr8_4:6343026-6343045 Msa1309870:CDS 45.0%
CAACCCATTAGCATCATCAC+CGG + chr8_4:6343048-6343067 None:intergenic 45.0%
! ATGGGTTGAAGTGTCTGACA+TGG - chr8_4:6343060-6343079 Msa1309870:CDS 45.0%
! GTTGAAGTGTCTGACATGGT+TGG - chr8_4:6343064-6343083 Msa1309870:CDS 45.0%
! GTTCTCTCTAAGAACCCAGA+AGG + chr8_4:6343284-6343303 None:intergenic 45.0%
GAGAACAAAGGAACAAGGGA+TGG - chr8_4:6343298-6343317 Msa1309870:CDS 45.0%
ATCCTTCGTCACAGTTCAGT+TGG - chr8_4:6343350-6343369 Msa1309870:CDS 45.0%
TTCGTCACAGTTCAGTTGGT+GGG - chr8_4:6343354-6343373 Msa1309870:CDS 45.0%
! ATGGTGTGCCACTAATCACA+TGG - chr8_4:6343423-6343442 Msa1309870:CDS 45.0%
GTTCTCTGCTCAGCAAATAG+AGG + chr8_4:6343449-6343468 None:intergenic 45.0%
! AATGCGGTTTTGCTGAGTGA+AGG - chr8_4:6343470-6343489 Msa1309870:CDS 45.0%
GCTGAGTGAAGGACTAAAAG+TGG - chr8_4:6343481-6343500 Msa1309870:CDS 45.0%
AAGGACTAAAAGTGGGACTG+AGG - chr8_4:6343489-6343508 Msa1309870:CDS 45.0%
ATTGCAGTTGTTCCAGGTGT+TGG - chr8_4:6342324-6342343 Msa1309870:CDS 45.0%
AAGTGGCTATATCCAACACC+TGG + chr8_4:6342339-6342358 None:intergenic 45.0%
ACATGCTTCATTCCCTCACT+TGG - chr8_4:6342417-6342436 Msa1309870:CDS 45.0%
CATGCTTCATTCCCTCACTT+GGG - chr8_4:6342418-6342437 Msa1309870:CDS 45.0%
!! AGGTCTTTGGAGTTAACTGG+TGG + chr8_4:6342510-6342529 None:intergenic 45.0%
!! GGTAGGTCTTTGGAGTTAAC+TGG + chr8_4:6342513-6342532 None:intergenic 45.0%
AACTCCAAAGACCTACCACA+AGG - chr8_4:6342516-6342535 Msa1309870:CDS 45.0%
ACTCCAAAGACCTACCACAA+GGG - chr8_4:6342517-6342536 Msa1309870:CDS 45.0%
AATCCCTTGTGGTAGGTCTT+TGG + chr8_4:6342523-6342542 None:intergenic 45.0%
CTAAAGCAATCCCTTGTGGT+AGG + chr8_4:6342530-6342549 None:intergenic 45.0%
AGTGCTAAAGCAATCCCTTG+TGG + chr8_4:6342534-6342553 None:intergenic 45.0%
CTCACTGCCATCTATACATG+AGG - chr8_4:6342578-6342597 Msa1309870:CDS 45.0%
TCAACCACCAAGGCAACAAA+GGG + chr8_4:6342630-6342649 None:intergenic 45.0%
ATCAACCACCAAGGCAACAA+AGG + chr8_4:6342631-6342650 None:intergenic 45.0%
CCTGGTATTTGAATAGGCTC+TGG + chr8_4:6342798-6342817 None:intergenic 45.0%
CCAGAGCCTATTCAAATACC+AGG - chr8_4:6342795-6342814 Msa1309870:CDS 45.0%
ACAAGATCCCGACCATGAAT+CGG + chr8_4:6342828-6342847 None:intergenic 45.0%
GCACTCACAGAAGAAGGAAA+TGG - chr8_4:6342972-6342991 Msa1309870:CDS 45.0%
GGTCCAACAGCATAAACATC+AGG + chr8_4:6343002-6343021 None:intergenic 45.0%
ATCCAAACGCCAACCAAATC+CGG - chr8_4:6343026-6343045 Msa1309870:CDS 45.0%
CAACCCATTAGCATCATCAC+CGG + chr8_4:6343048-6343067 None:intergenic 45.0%
! ATGGGTTGAAGTGTCTGACA+TGG - chr8_4:6343060-6343079 Msa1309870:CDS 45.0%
! GTTGAAGTGTCTGACATGGT+TGG - chr8_4:6343064-6343083 Msa1309870:CDS 45.0%
! GTTCTCTCTAAGAACCCAGA+AGG + chr8_4:6343284-6343303 None:intergenic 45.0%
GAGAACAAAGGAACAAGGGA+TGG - chr8_4:6343298-6343317 Msa1309870:CDS 45.0%
ATCCTTCGTCACAGTTCAGT+TGG - chr8_4:6343350-6343369 Msa1309870:CDS 45.0%
TTCGTCACAGTTCAGTTGGT+GGG - chr8_4:6343354-6343373 Msa1309870:CDS 45.0%
! ATGGTGTGCCACTAATCACA+TGG - chr8_4:6343423-6343442 Msa1309870:CDS 45.0%
GTTCTCTGCTCAGCAAATAG+AGG + chr8_4:6343449-6343468 None:intergenic 45.0%
! AATGCGGTTTTGCTGAGTGA+AGG - chr8_4:6343470-6343489 Msa1309870:CDS 45.0%
GCTGAGTGAAGGACTAAAAG+TGG - chr8_4:6343481-6343500 Msa1309870:CDS 45.0%
AAGGACTAAAAGTGGGACTG+AGG - chr8_4:6343489-6343508 Msa1309870:CDS 45.0%
AAGGACACCCTTTGTTGCCT+TGG - chr8_4:6342620-6342639 Msa1309870:CDS 50.0%
GACAAAGTGGTGACTGAAGC+AGG + chr8_4:6342717-6342736 None:intergenic 50.0%
!! GCTGTGTACCGATTCATGGT+CGG - chr8_4:6342817-6342836 Msa1309870:CDS 50.0%
!! CTGTGTACCGATTCATGGTC+GGG - chr8_4:6342818-6342837 Msa1309870:CDS 50.0%
! GCATCATCACCGGATTTGGT+TGG + chr8_4:6343038-6343057 None:intergenic 50.0%
!! GCAGCATTGGCTGTACTACT+TGG + chr8_4:6343221-6343240 None:intergenic 50.0%
TGAATCTGTGGTGCCCATGA+TGG + chr8_4:6343329-6343348 None:intergenic 50.0%
CACCAACTGAACTGTGACGA+AGG + chr8_4:6343355-6343374 None:intergenic 50.0%
CTTCGTCACAGTTCAGTTGG+TGG - chr8_4:6343353-6343372 Msa1309870:CDS 50.0%
GGTTCTTGACTCACTGTGGT+TGG - chr8_4:6343375-6343394 Msa1309870:CDS 50.0%
! ACGCTTGAGAGTGTGTTGCA+TGG - chr8_4:6343404-6343423 Msa1309870:CDS 50.0%
TGCTGAGCAGAGAACGAATG+CGG - chr8_4:6343454-6343473 Msa1309870:CDS 50.0%
TGTCTCATGGAAGGGGAAGA+AGG - chr8_4:6343569-6343588 Msa1309870:CDS 50.0%
TCATGGAAGGGGAAGAAGGT+GGG - chr8_4:6343573-6343592 Msa1309870:CDS 50.0%
AAGGACACCCTTTGTTGCCT+TGG - chr8_4:6342620-6342639 Msa1309870:CDS 50.0%
GACAAAGTGGTGACTGAAGC+AGG + chr8_4:6342717-6342736 None:intergenic 50.0%
!! GCTGTGTACCGATTCATGGT+CGG - chr8_4:6342817-6342836 Msa1309870:CDS 50.0%
!! CTGTGTACCGATTCATGGTC+GGG - chr8_4:6342818-6342837 Msa1309870:CDS 50.0%
! GCATCATCACCGGATTTGGT+TGG + chr8_4:6343038-6343057 None:intergenic 50.0%
!! GCAGCATTGGCTGTACTACT+TGG + chr8_4:6343221-6343240 None:intergenic 50.0%
TGAATCTGTGGTGCCCATGA+TGG + chr8_4:6343329-6343348 None:intergenic 50.0%
CACCAACTGAACTGTGACGA+AGG + chr8_4:6343355-6343374 None:intergenic 50.0%
CTTCGTCACAGTTCAGTTGG+TGG - chr8_4:6343353-6343372 Msa1309870:CDS 50.0%
GGTTCTTGACTCACTGTGGT+TGG - chr8_4:6343375-6343394 Msa1309870:CDS 50.0%
! ACGCTTGAGAGTGTGTTGCA+TGG - chr8_4:6343404-6343423 Msa1309870:CDS 50.0%
TGCTGAGCAGAGAACGAATG+CGG - chr8_4:6343454-6343473 Msa1309870:CDS 50.0%
TGTCTCATGGAAGGGGAAGA+AGG - chr8_4:6343569-6343588 Msa1309870:CDS 50.0%
TCATGGAAGGGGAAGAAGGT+GGG - chr8_4:6343573-6343592 Msa1309870:CDS 50.0%
GTTGGGAGAGACCCAAGTGA+GGG + chr8_4:6342432-6342451 None:intergenic 55.0%
AGTTGGGAGAGACCCAAGTG+AGG + chr8_4:6342433-6342452 None:intergenic 55.0%
GACACCCTTTGTTGCCTTGG+TGG - chr8_4:6342623-6342642 Msa1309870:CDS 55.0%
CCATGAATCGGTACACAGCC+TGG + chr8_4:6342816-6342835 None:intergenic 55.0%
!! CCAGGCTGTGTACCGATTCA+TGG - chr8_4:6342813-6342832 Msa1309870:CDS 55.0%
! CACCGGATTTGGTTGGCGTT+TGG + chr8_4:6343031-6343050 None:intergenic 55.0%
! GGTGGGTTCTTGACTCACTG+TGG - chr8_4:6343371-6343390 Msa1309870:CDS 55.0%
CTCATGGAAGGGGAAGAAGG+TGG - chr8_4:6343572-6343591 Msa1309870:CDS 55.0%
GTTGGGAGAGACCCAAGTGA+GGG + chr8_4:6342432-6342451 None:intergenic 55.0%
AGTTGGGAGAGACCCAAGTG+AGG + chr8_4:6342433-6342452 None:intergenic 55.0%
GACACCCTTTGTTGCCTTGG+TGG - chr8_4:6342623-6342642 Msa1309870:CDS 55.0%
CCATGAATCGGTACACAGCC+TGG + chr8_4:6342816-6342835 None:intergenic 55.0%
!! CCAGGCTGTGTACCGATTCA+TGG - chr8_4:6342813-6342832 Msa1309870:CDS 55.0%
! CACCGGATTTGGTTGGCGTT+TGG + chr8_4:6343031-6343050 None:intergenic 55.0%
! GGTGGGTTCTTGACTCACTG+TGG - chr8_4:6343371-6343390 Msa1309870:CDS 55.0%
CTCATGGAAGGGGAAGAAGG+TGG - chr8_4:6343572-6343591 Msa1309870:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 6342306 6343712 6342306 ID=Msa1309870;Name=Msa1309870
chr8_4 mRNA 6342306 6343712 6342306 ID=Msa1309870-mRNA-1;Parent=Msa1309870;Name=Msa1309870-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|468
chr8_4 exon 6342306 6343712 6342306 ID=Msa1309870-mRNA-1:exon:2171;Parent=Msa1309870-mRNA-1
chr8_4 CDS 6342306 6343712 6342306 ID=Msa1309870-mRNA-1:cds;Parent=Msa1309870-mRNA-1
Gene Sequence

>Msa1309870

ATGGAGAAAACAATTCATATTGCAGTTGTTCCAGGTGTTGGATATAGCCACTTATTCCCAATTCTTCAATTCTCCAAGAGACTTGTTCAGCTTCATCCATACTTTCATGTCACATGCTTCATTCCCTCACTTGGGTCTCTCCCAACTGATTCAAAAAAAATCCTTGAAACTCTTCCATCAAACATCAGCTGTACTTTTCTTCCACCAGTTAACTCCAAAGACCTACCACAAGGGATTGCTTTAGCACTTCAAATTCAGCTCACAGTAACTCACTCACTGCCATCTATACATGAGGCCTTGAAGTCCTTAACTTTAAGGACACCCTTTGTTGCCTTGGTGGTTGATTCATTAGCAATTGATGCACTAGATTTGGCTAAAGAGTTCAACATGTTGTCCTATGTTTACTTTCCTGCTTCAGTCACCACTTTGTCTTCATACTTCTATTTACTCAAGTTGAATAAGGAAACATCATGTGAGTACAGAGATCTTCCAGAGCCTATTCAAATACCAGGCTGTGTACCGATTCATGGTCGGGATCTTGTTGACCTAGCTCAAGATAGATCAAGTCAATCTTACAAATTCTTAGTTCAACGTGTTGAAAAATTCCGTCTTTTTGATGGTATTCTTATTAATAGCTTCCTAGAAATTGAAAAAGGTCCTATAGAAGCACTCACAGAAGAAGGAAATGGCAACCCTGATGTTTATGCTGTTGGACCAATTATCCAAACGCCAACCAAATCCGGTGATGATGCTAATGGGTTGAAGTGTCTGACATGGTTGGACAAACAGCAACCTTGTTCAGTTTTGTATGTTTCTTTTGGGAGTGGTGGCACACTTTCGCAAGAACAAATTAATGAGTTGGCTTTGGGTTTGGAATTGAGTAATCATAAATTCTTATGGGTTGTGAGATCACCAAGTAGTACAGCCAATGCTGCATATCTTTCAGCATCTGATGTTGACCCTTTACAATTTTTACCTTCTGGGTTCTTAGAGAGAACAAAGGAACAAGGGATGGTTATTCCATCATGGGCACCACAGATTCAAATCCTTCGTCACAGTTCAGTTGGTGGGTTCTTGACTCACTGTGGTTGGAATTCAACGCTTGAGAGTGTGTTGCATGGTGTGCCACTAATCACATGGCCTCTATTTGCTGAGCAGAGAACGAATGCGGTTTTGCTGAGTGAAGGACTAAAAGTGGGACTGAGGCCAAAAGTTAATCAGAATGGCATTGTGGAAAAGGTACAAATTGCAGAGTTAATCAAGTGTCTCATGGAAGGGGAAGAAGGTGGGAAACTGCGCAAAAATATGAAGGAATTGAAAGAAGCTGCTAATAGTGCACATAAAGATGATGGATCTTCTACAATGACACTTTCTCAATTAGCACTCAAGTGGAGAAATATGGTATAG

Protein sequence

>Msa1309870

MEKTIHIAVVPGVGYSHLFPILQFSKRLVQLHPYFHVTCFIPSLGSLPTDSKKILETLPSNISCTFLPPVNSKDLPQGIALALQIQLTVTHSLPSIHEALKSLTLRTPFVALVVDSLAIDALDLAKEFNMLSYVYFPASVTTLSSYFYLLKLNKETSCEYRDLPEPIQIPGCVPIHGRDLVDLAQDRSSQSYKFLVQRVEKFRLFDGILINSFLEIEKGPIEALTEEGNGNPDVYAVGPIIQTPTKSGDDANGLKCLTWLDKQQPCSVLYVSFGSGGTLSQEQINELALGLELSNHKFLWVVRSPSSTANAAYLSASDVDPLQFLPSGFLERTKEQGMVIPSWAPQIQILRHSSVGGFLTHCGWNSTLESVLHGVPLITWPLFAEQRTNAVLLSEGLKVGLRPKVNQNGIVEKVQIAELIKCLMEGEEGGKLRKNMKELKEAANSAHKDDGSSTMTLSQLALKWRNMV*