Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1288030 | G7JZK4 | 60.241 | 83 | 31 | 1 | 1 | 81 | 182 | 264 | 1.56e-25 | 107 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0030300 | Msa1288030 | 0.816342 | 5.811854e-52 | -8.615850e-47 |
Msa0077900 | Msa1288030 | 0.800098 | 1.690236e-48 | -8.615850e-47 |
Msa0086420 | Msa1288030 | 0.800237 | 1.583321e-48 | -8.615850e-47 |
Msa0090550 | Msa1288030 | 0.806214 | 9.168497e-50 | -8.615850e-47 |
Msa0662630 | Msa1288030 | 0.803591 | 3.240426e-49 | -8.615850e-47 |
Msa0726080 | Msa1288030 | 0.810866 | 9.314917e-51 | -8.615850e-47 |
Msa1270660 | Msa1288030 | 0.803922 | 2.765579e-49 | -8.615850e-47 |
Msa1288030 | Msa1307180 | 0.806904 | 6.557719e-50 | -8.615850e-47 |
Msa1288030 | Msa1316360 | 0.807054 | 6.095518e-50 | -8.615850e-47 |
Msa1288030 | Msa1371240 | 0.817720 | 2.849162e-52 | -8.615850e-47 |
Msa0380100 | Msa1288030 | 0.806908 | 6.545123e-50 | -8.615850e-47 |
Msa1063420 | Msa1288030 | 0.802426 | 5.641387e-49 | -8.615850e-47 |
Msa1081790 | Msa1288030 | -0.808199 | 3.482140e-50 | -8.615850e-47 |
Msa0244980 | Msa1288030 | 0.813997 | 1.927615e-51 | -8.615850e-47 |
Msa0285330 | Msa1288030 | 0.807441 | 5.046850e-50 | -8.615850e-47 |
Msa0324240 | Msa1288030 | 0.802264 | 6.091495e-49 | -8.615850e-47 |
Msa0489660 | Msa1288030 | 0.808148 | 3.570487e-50 | -8.615850e-47 |
Msa0846230 | Msa1288030 | 0.812157 | 4.882190e-51 | -8.615850e-47 |
Msa0860030 | Msa1288030 | -0.800273 | 1.557173e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1288030 | MtrunA17_Chr5g0430431 | 61.194 | 67 | 26 | 0 | 15 | 81 | 187 | 253 | 6.49e-23 | 90.5 |
Msa1288030 | MtrunA17_Chr2g0281511 | 30.000 | 80 | 56 | 0 | 2 | 81 | 36 | 115 | 4.45e-12 | 59.3 |
Msa1288030 | MtrunA17_Chr2g0309121 | 28.750 | 80 | 56 | 1 | 2 | 81 | 36 | 114 | 9.95e-11 | 55.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 41 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTCTCTTCAAGACCCTTC+TGG | 0.245379 | 8_3:+40300924 | None:intergenic |
GTATAACTGCTGATGCTTAT+AGG | 0.268733 | 8_3:-40299895 | Msa1288030:CDS |
TACTACATGCTTCCTGGCTC+TGG | 0.321558 | 8_3:-40299203 | Msa1288030:CDS |
GGGAAATGCCGAGAAATCTT+TGG | 0.331217 | 8_3:-40300830 | Msa1288030:CDS |
TATAACTGCTGATGCTTATA+GGG | 0.337415 | 8_3:-40299894 | Msa1288030:CDS |
TGACAGGTTGATCTTTGATT+TGG | 0.347996 | 8_3:-40300761 | Msa1288030:CDS |
ACCCTTCTGGATATTTGATT+AGG | 0.353511 | 8_3:+40300937 | None:intergenic |
TCTTTATACTACATGCTTCC+TGG | 0.373551 | 8_3:-40299209 | Msa1288030:CDS |
AAAACTAATTCAACCTCATA+AGG | 0.373637 | 8_3:+40299155 | None:intergenic |
AACCTCATAAGGGCCGTTCT+TGG | 0.384862 | 8_3:+40299166 | None:intergenic |
ACCTCATAAGGGCCGTTCTT+GGG | 0.400908 | 8_3:+40299167 | None:intergenic |
TCTTGAAGAGAAAGCATCTA+AGG | 0.410279 | 8_3:-40300915 | Msa1288030:CDS |
TTCACCACCCAAAGATTTCT+CGG | 0.418046 | 8_3:+40300822 | None:intergenic |
CCCCAAAATGAAATCTTTGC+AGG | 0.421235 | 8_3:-40301214 | None:intergenic |
ATGCTTCCTGGCTCTGGATG+AGG | 0.442440 | 8_3:-40299197 | Msa1288030:CDS |
TCCCAAGAACGGCCCTTATG+AGG | 0.443648 | 8_3:-40299168 | Msa1288030:CDS |
GCATCTAAGGATGACTTTAG+AGG | 0.446637 | 8_3:-40300902 | Msa1288030:CDS |
GGAAATGCCGAGAAATCTTT+GGG | 0.452916 | 8_3:-40300829 | Msa1288030:CDS |
TTTCCTGGATTATGGTTAGT+GGG | 0.482593 | 8_3:-40299917 | Msa1288030:CDS |
AAACTAATTCAACCTCATAA+GGG | 0.488840 | 8_3:+40299156 | None:intergenic |
GCAAGGTAACAACTGCTGGC+AGG | 0.496049 | 8_3:-40300852 | Msa1288030:CDS |
CAAGGTAACAACTGCTGGCA+GGG | 0.496914 | 8_3:-40300851 | Msa1288030:CDS |
AATTGCAAGGTAACAACTGC+TGG | 0.501920 | 8_3:-40300856 | Msa1288030:CDS |
CAAAGTCCTCATCCAGAGCC+AGG | 0.520756 | 8_3:+40299191 | None:intergenic |
AGAAATCTTTGGGTGGTGAA+TGG | 0.523259 | 8_3:-40300819 | Msa1288030:CDS |
CTGACATACATCTTGGTTGG+TGG | 0.524036 | 8_3:+40300733 | None:intergenic |
GCGACTTACAAGAGGGTGAC+AGG | 0.538347 | 8_3:-40300777 | Msa1288030:CDS |
AGGAAGCATGTAGTATAAAG+AGG | 0.544819 | 8_3:+40299211 | None:intergenic |
TTCCTAATCAAATATCCAGA+AGG | 0.553976 | 8_3:-40300939 | Msa1288030:CDS |
ACACAAGACATTTAATTGCA+AGG | 0.558204 | 8_3:-40300869 | Msa1288030:CDS |
ATACCCACTAACCATAATCC+AGG | 0.578897 | 8_3:+40299914 | None:intergenic |
TCCTAATCAAATATCCAGAA+GGG | 0.580669 | 8_3:-40300938 | Msa1288030:CDS |
AAGGTAACAACTGCTGGCAG+GGG | 0.589193 | 8_3:-40300850 | Msa1288030:CDS |
TGAGGACTTTGTCCCAAGAA+CGG | 0.605312 | 8_3:-40299179 | Msa1288030:CDS |
TGTCTGACATACATCTTGGT+TGG | 0.618474 | 8_3:+40300730 | None:intergenic |
CATAGACCGCGACTTACAAG+AGG | 0.631058 | 8_3:-40300785 | Msa1288030:CDS |
GATGTGTCTGACATACATCT+TGG | 0.639510 | 8_3:+40300726 | None:intergenic |
GGTAGCTGATACACCAACAA+AGG | 0.641422 | 8_3:-40299873 | Msa1288030:intron |
TGTCACCCTCTTGTAAGTCG+CGG | 0.659906 | 8_3:+40300779 | None:intergenic |
AATGCCGAGAAATCTTTGGG+TGG | 0.694777 | 8_3:-40300826 | Msa1288030:CDS |
ATAGACCGCGACTTACAAGA+GGG | 0.718822 | 8_3:-40300784 | Msa1288030:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTAATATCTCCAATTACA+GGG | - | chr8_3:40299229-40299248 | Msa1288030:CDS | 20.0% |
!! | ATTACACAGAAAATTGTTTA+AGG | - | chr8_3:40300174-40300193 | Msa1288030:intron | 20.0% |
!!! | GTTTTTTTTCAATGATTTTG+TGG | - | chr8_3:40300664-40300683 | Msa1288030:intron | 20.0% |
!! | TATTAATATCTCCAATTACA+GGG | - | chr8_3:40299229-40299248 | Msa1288030:CDS | 20.0% |
!! | ATTACACAGAAAATTGTTTA+AGG | - | chr8_3:40300174-40300193 | Msa1288030:intron | 20.0% |
!!! | GTTTTTTTTCAATGATTTTG+TGG | - | chr8_3:40300664-40300683 | Msa1288030:intron | 20.0% |
! | CTATTAATATCTCCAATTAC+AGG | - | chr8_3:40299228-40299247 | Msa1288030:CDS | 25.0% |
! | ATGCTGTATAAAATGAAATG+TGG | + | chr8_3:40299406-40299425 | None:intergenic | 25.0% |
!!! | ACTACTTTAGAATCTATTGA+AGG | - | chr8_3:40299757-40299776 | Msa1288030:intron | 25.0% |
!!! | CTGTGTAATTTTGTTTAGTT+AGG | + | chr8_3:40300163-40300182 | None:intergenic | 25.0% |
! | NAAGAATGTTCAGAAACAAA+TGG | - | chr8_3:40300311-40300330 | Msa1288030:intron | 25.0% |
! | ATAATCATCAATCAGAAGAA+AGG | + | chr8_3:40300383-40300402 | None:intergenic | 25.0% |
!!! | AGAAAAAAAAGTACCTTTGT+TGG | + | chr8_3:40300509-40300528 | None:intergenic | 25.0% |
!! | TGTTTATACTGATTGTTTGA+TGG | - | chr8_3:40300687-40300706 | Msa1288030:intron | 25.0% |
!!! | TGTTTTTGTTGGTTTAAACA+AGG | - | chr8_3:40300870-40300889 | Msa1288030:CDS | 25.0% |
!!! | GTTTTTGTTGGTTTAAACAA+GGG | - | chr8_3:40300871-40300890 | Msa1288030:CDS | 25.0% |
!! | TTTTTACTTGTTCATCTTAG+TGG | - | chr8_3:40300910-40300929 | Msa1288030:CDS | 25.0% |
! | ATATATATTTCTTTCCTTCC+AGG | + | chr8_3:40300954-40300973 | None:intergenic | 25.0% |
!! | ATAATTTCAGAGCTTTTGTT+TGG | - | chr8_3:40301033-40301052 | Msa1288030:intron | 25.0% |
!!! | TGTTTGGAATTTTGCATTTT+TGG | - | chr8_3:40301049-40301068 | Msa1288030:intron | 25.0% |
!!! | GTTTGGAATTTTGCATTTTT+GGG | - | chr8_3:40301050-40301069 | Msa1288030:intron | 25.0% |
!!! | TTTGGAATTTTGCATTTTTG+GGG | - | chr8_3:40301051-40301070 | Msa1288030:intron | 25.0% |
! | CTATTAATATCTCCAATTAC+AGG | - | chr8_3:40299228-40299247 | Msa1288030:CDS | 25.0% |
! | ATGCTGTATAAAATGAAATG+TGG | + | chr8_3:40299406-40299425 | None:intergenic | 25.0% |
!!! | ACTACTTTAGAATCTATTGA+AGG | - | chr8_3:40299757-40299776 | Msa1288030:intron | 25.0% |
!!! | CTGTGTAATTTTGTTTAGTT+AGG | + | chr8_3:40300163-40300182 | None:intergenic | 25.0% |
! | NAAGAATGTTCAGAAACAAA+TGG | - | chr8_3:40300311-40300330 | Msa1288030:intron | 25.0% |
! | ATAATCATCAATCAGAAGAA+AGG | + | chr8_3:40300383-40300402 | None:intergenic | 25.0% |
!!! | AGAAAAAAAAGTACCTTTGT+TGG | + | chr8_3:40300509-40300528 | None:intergenic | 25.0% |
!! | TGTTTATACTGATTGTTTGA+TGG | - | chr8_3:40300687-40300706 | Msa1288030:intron | 25.0% |
!!! | TGTTTTTGTTGGTTTAAACA+AGG | - | chr8_3:40300870-40300889 | Msa1288030:CDS | 25.0% |
!!! | GTTTTTGTTGGTTTAAACAA+GGG | - | chr8_3:40300871-40300890 | Msa1288030:CDS | 25.0% |
!! | TTTTTACTTGTTCATCTTAG+TGG | - | chr8_3:40300910-40300929 | Msa1288030:CDS | 25.0% |
! | ATATATATTTCTTTCCTTCC+AGG | + | chr8_3:40300954-40300973 | None:intergenic | 25.0% |
!! | ATAATTTCAGAGCTTTTGTT+TGG | - | chr8_3:40301033-40301052 | Msa1288030:intron | 25.0% |
!!! | TGTTTGGAATTTTGCATTTT+TGG | - | chr8_3:40301049-40301068 | Msa1288030:intron | 25.0% |
!!! | GTTTGGAATTTTGCATTTTT+GGG | - | chr8_3:40301050-40301069 | Msa1288030:intron | 25.0% |
!!! | TTTGGAATTTTGCATTTTTG+GGG | - | chr8_3:40301051-40301070 | Msa1288030:intron | 25.0% |
TTCCTAATCAAATATCCAGA+AGG | - | chr8_3:40299427-40299446 | Msa1288030:intron | 30.0% | |
TCCTAATCAAATATCCAGAA+GGG | - | chr8_3:40299428-40299447 | Msa1288030:intron | 30.0% | |
ACACAAGACATTTAATTGCA+AGG | - | chr8_3:40299497-40299516 | Msa1288030:intron | 30.0% | |
!!! | ACTTTTGGAATTGAAGATGA+TGG | - | chr8_3:40299694-40299713 | Msa1288030:intron | 30.0% |
!!! | TGAAGATGATGGAAACATTT+TGG | - | chr8_3:40299705-40299724 | Msa1288030:intron | 30.0% |
! | TCTAAAGTAGTTGTGTTTGA+TGG | + | chr8_3:40299748-40299767 | None:intergenic | 30.0% |
ATCAGTGTATTCAGTTGTTT+AGG | + | chr8_3:40299844-40299863 | None:intergenic | 30.0% | |
ACTACACAAAGCAATTATAC+TGG | - | chr8_3:40299943-40299962 | Msa1288030:intron | 30.0% | |
! | TGTTTTCAGAATGTTTTTCC+TGG | - | chr8_3:40300434-40300453 | Msa1288030:intron | 30.0% |
! | AGAATGTTTTTCCTGGATTA+TGG | - | chr8_3:40300441-40300460 | Msa1288030:intron | 30.0% |
TATAACTGCTGATGCTTATA+GGG | - | chr8_3:40300472-40300491 | Msa1288030:intron | 30.0% | |
! | ATTGTAAAGAGAAAGTGTGA+AGG | - | chr8_3:40300795-40300814 | Msa1288030:CDS | 30.0% |
AAATGTTGGAGATATTGGAT+TGG | - | chr8_3:40300818-40300837 | Msa1288030:CDS | 30.0% | |
!!! | GCTAATTCTCTTGTTTTTGT+TGG | - | chr8_3:40300859-40300878 | Msa1288030:CDS | 30.0% |
! | AAACAAGGGTTTAGTTTAGT+TGG | - | chr8_3:40300885-40300904 | Msa1288030:CDS | 30.0% |
!! | TTGGAATTTTGCATTTTTGG+GGG | - | chr8_3:40301052-40301071 | Msa1288030:intron | 30.0% |
TTCCTAATCAAATATCCAGA+AGG | - | chr8_3:40299427-40299446 | Msa1288030:intron | 30.0% | |
TCCTAATCAAATATCCAGAA+GGG | - | chr8_3:40299428-40299447 | Msa1288030:intron | 30.0% | |
ACACAAGACATTTAATTGCA+AGG | - | chr8_3:40299497-40299516 | Msa1288030:intron | 30.0% | |
!!! | ACTTTTGGAATTGAAGATGA+TGG | - | chr8_3:40299694-40299713 | Msa1288030:intron | 30.0% |
!!! | TGAAGATGATGGAAACATTT+TGG | - | chr8_3:40299705-40299724 | Msa1288030:intron | 30.0% |
! | TCTAAAGTAGTTGTGTTTGA+TGG | + | chr8_3:40299748-40299767 | None:intergenic | 30.0% |
ATCAGTGTATTCAGTTGTTT+AGG | + | chr8_3:40299844-40299863 | None:intergenic | 30.0% | |
ACTACACAAAGCAATTATAC+TGG | - | chr8_3:40299943-40299962 | Msa1288030:intron | 30.0% | |
! | TGTTTTCAGAATGTTTTTCC+TGG | - | chr8_3:40300434-40300453 | Msa1288030:intron | 30.0% |
! | AGAATGTTTTTCCTGGATTA+TGG | - | chr8_3:40300441-40300460 | Msa1288030:intron | 30.0% |
TATAACTGCTGATGCTTATA+GGG | - | chr8_3:40300472-40300491 | Msa1288030:intron | 30.0% | |
! | ATTGTAAAGAGAAAGTGTGA+AGG | - | chr8_3:40300795-40300814 | Msa1288030:CDS | 30.0% |
AAATGTTGGAGATATTGGAT+TGG | - | chr8_3:40300818-40300837 | Msa1288030:CDS | 30.0% | |
!!! | GCTAATTCTCTTGTTTTTGT+TGG | - | chr8_3:40300859-40300878 | Msa1288030:CDS | 30.0% |
! | AAACAAGGGTTTAGTTTAGT+TGG | - | chr8_3:40300885-40300904 | Msa1288030:CDS | 30.0% |
!! | TTGGAATTTTGCATTTTTGG+GGG | - | chr8_3:40301052-40301071 | Msa1288030:intron | 30.0% |
! | TTTTATGCATTCCAGTCGTT+TGG | - | chr8_3:40299323-40299342 | Msa1288030:intron | 35.0% |
! | GTTTGGTTCAAGTTAGCAAA+GGG | - | chr8_3:40299340-40299359 | Msa1288030:intron | 35.0% |
ACCCTTCTGGATATTTGATT+AGG | + | chr8_3:40299432-40299451 | None:intergenic | 35.0% | |
!! | TCTTGAAGAGAAAGCATCTA+AGG | - | chr8_3:40299451-40299470 | Msa1288030:intron | 35.0% |
!! | TGACAGGTTGATCTTTGATT+TGG | - | chr8_3:40299605-40299624 | Msa1288030:intron | 35.0% |
AAGGTGAGAAAAACACAAGA+AGG | - | chr8_3:40299776-40299795 | Msa1288030:intron | 35.0% | |
AGGTGAGAAAAACACAAGAA+GGG | - | chr8_3:40299777-40299796 | Msa1288030:intron | 35.0% | |
TGATCAGAATCTAAATGCAG+CGG | - | chr8_3:40299895-40299914 | Msa1288030:CDS | 35.0% | |
TACTCTTAGTGAAATCTCCT+TGG | + | chr8_3:40300011-40300030 | None:intergenic | 35.0% | |
TTGATTGTGTTCTTGAGCAA+AGG | + | chr8_3:40300105-40300124 | None:intergenic | 35.0% | |
! | TTTTCCTGGATTATGGTTAG+TGG | - | chr8_3:40300448-40300467 | Msa1288030:intron | 35.0% |
TTTCCTGGATTATGGTTAGT+GGG | - | chr8_3:40300449-40300468 | Msa1288030:intron | 35.0% | |
GTATAACTGCTGATGCTTAT+AGG | - | chr8_3:40300471-40300490 | Msa1288030:intron | 35.0% | |
CATCTTATCAAATGTGTGTC+CGG | + | chr8_3:40300632-40300651 | None:intergenic | 35.0% | |
! | TGATAAGATGTGTTGATGTG+AGG | - | chr8_3:40300642-40300661 | Msa1288030:intron | 35.0% |
AGTGAATTGCAGCTTGTAAA+TGG | - | chr8_3:40300740-40300759 | Msa1288030:CDS | 35.0% | |
GTGAATTGCAGCTTGTAAAT+GGG | - | chr8_3:40300741-40300760 | Msa1288030:CDS | 35.0% | |
TGAATTGCAGCTTGTAAATG+GGG | - | chr8_3:40300742-40300761 | Msa1288030:CDS | 35.0% | |
! | AGAAAGTGTGAAGGAAATGT+TGG | - | chr8_3:40300804-40300823 | Msa1288030:CDS | 35.0% |
GAAGGAAATGTTGGAGATAT+TGG | - | chr8_3:40300813-40300832 | Msa1288030:CDS | 35.0% | |
TAGTGGTAGTAGTTTATTCC+TGG | - | chr8_3:40300933-40300952 | Msa1288030:CDS | 35.0% | |
!! | TGGAATTTTGCATTTTTGGG+GGG | - | chr8_3:40301053-40301072 | Msa1288030:intron | 35.0% |
! | AGGAAGCATGTAGTATAAAG+AGG | + | chr8_3:40301158-40301177 | None:intergenic | 35.0% |
TCTTTATACTACATGCTTCC+TGG | - | chr8_3:40301157-40301176 | Msa1288030:intron | 35.0% | |
! | TTTTATGCATTCCAGTCGTT+TGG | - | chr8_3:40299323-40299342 | Msa1288030:intron | 35.0% |
! | GTTTGGTTCAAGTTAGCAAA+GGG | - | chr8_3:40299340-40299359 | Msa1288030:intron | 35.0% |
ACCCTTCTGGATATTTGATT+AGG | + | chr8_3:40299432-40299451 | None:intergenic | 35.0% | |
!! | TCTTGAAGAGAAAGCATCTA+AGG | - | chr8_3:40299451-40299470 | Msa1288030:intron | 35.0% |
!! | TGACAGGTTGATCTTTGATT+TGG | - | chr8_3:40299605-40299624 | Msa1288030:intron | 35.0% |
AAGGTGAGAAAAACACAAGA+AGG | - | chr8_3:40299776-40299795 | Msa1288030:intron | 35.0% | |
AGGTGAGAAAAACACAAGAA+GGG | - | chr8_3:40299777-40299796 | Msa1288030:intron | 35.0% | |
TGATCAGAATCTAAATGCAG+CGG | - | chr8_3:40299895-40299914 | Msa1288030:CDS | 35.0% | |
TACTCTTAGTGAAATCTCCT+TGG | + | chr8_3:40300011-40300030 | None:intergenic | 35.0% | |
TTGATTGTGTTCTTGAGCAA+AGG | + | chr8_3:40300105-40300124 | None:intergenic | 35.0% | |
! | TTTTCCTGGATTATGGTTAG+TGG | - | chr8_3:40300448-40300467 | Msa1288030:intron | 35.0% |
TTTCCTGGATTATGGTTAGT+GGG | - | chr8_3:40300449-40300468 | Msa1288030:intron | 35.0% | |
GTATAACTGCTGATGCTTAT+AGG | - | chr8_3:40300471-40300490 | Msa1288030:intron | 35.0% | |
CATCTTATCAAATGTGTGTC+CGG | + | chr8_3:40300632-40300651 | None:intergenic | 35.0% | |
! | TGATAAGATGTGTTGATGTG+AGG | - | chr8_3:40300642-40300661 | Msa1288030:intron | 35.0% |
AGTGAATTGCAGCTTGTAAA+TGG | - | chr8_3:40300740-40300759 | Msa1288030:CDS | 35.0% | |
GTGAATTGCAGCTTGTAAAT+GGG | - | chr8_3:40300741-40300760 | Msa1288030:CDS | 35.0% | |
TGAATTGCAGCTTGTAAATG+GGG | - | chr8_3:40300742-40300761 | Msa1288030:CDS | 35.0% | |
! | AGAAAGTGTGAAGGAAATGT+TGG | - | chr8_3:40300804-40300823 | Msa1288030:CDS | 35.0% |
GAAGGAAATGTTGGAGATAT+TGG | - | chr8_3:40300813-40300832 | Msa1288030:CDS | 35.0% | |
TAGTGGTAGTAGTTTATTCC+TGG | - | chr8_3:40300933-40300952 | Msa1288030:CDS | 35.0% | |
!! | TGGAATTTTGCATTTTTGGG+GGG | - | chr8_3:40301053-40301072 | Msa1288030:intron | 35.0% |
! | AGGAAGCATGTAGTATAAAG+AGG | + | chr8_3:40301158-40301177 | None:intergenic | 35.0% |
TCTTTATACTACATGCTTCC+TGG | - | chr8_3:40301157-40301176 | Msa1288030:intron | 35.0% | |
! | CATAAAGCTTTTTGCTGCGT+TGG | - | chr8_3:40299182-40299201 | Msa1288030:CDS | 40.0% |
!! | TTTGCTGCGTTGGTTTAAAC+TGG | - | chr8_3:40299192-40299211 | Msa1288030:CDS | 40.0% |
TCCTAATCAACATGCACTTC+AGG | + | chr8_3:40299255-40299274 | None:intergenic | 40.0% | |
! | CGTTTGGTTCAAGTTAGCAA+AGG | - | chr8_3:40299339-40299358 | Msa1288030:intron | 40.0% |
GCATCTAAGGATGACTTTAG+AGG | - | chr8_3:40299464-40299483 | Msa1288030:intron | 40.0% | |
AATTGCAAGGTAACAACTGC+TGG | - | chr8_3:40299510-40299529 | Msa1288030:intron | 40.0% | |
GGAAATGCCGAGAAATCTTT+GGG | - | chr8_3:40299537-40299556 | Msa1288030:intron | 40.0% | |
TTCACCACCCAAAGATTTCT+CGG | + | chr8_3:40299547-40299566 | None:intergenic | 40.0% | |
AGAAATCTTTGGGTGGTGAA+TGG | - | chr8_3:40299547-40299566 | Msa1288030:intron | 40.0% | |
TGTCTGACATACATCTTGGT+TGG | + | chr8_3:40299639-40299658 | None:intergenic | 40.0% | |
GATGTGTCTGACATACATCT+TGG | + | chr8_3:40299643-40299662 | None:intergenic | 40.0% | |
GGTGAGAAAAACACAAGAAG+GGG | - | chr8_3:40299778-40299797 | Msa1288030:intron | 40.0% | |
GTGAGAAAAACACAAGAAGG+GGG | - | chr8_3:40299779-40299798 | Msa1288030:intron | 40.0% | |
TGAGAAAAACACAAGAAGGG+GGG | - | chr8_3:40299780-40299799 | Msa1288030:intron | 40.0% | |
! | AAATCTCCTTGGAAGTGCAA+GGG | + | chr8_3:40300000-40300019 | None:intergenic | 40.0% |
ATACCCACTAACCATAATCC+AGG | + | chr8_3:40300455-40300474 | None:intergenic | 40.0% | |
!! | CTTCTGAGTTTTATCTGCGA+AGG | - | chr8_3:40300527-40300546 | Msa1288030:intron | 40.0% |
GTAATCACATGTGTCTGTGT+CGG | - | chr8_3:40300603-40300622 | Msa1288030:intron | 40.0% | |
! | TTGATGGTTGATCATTGCAG+AGG | - | chr8_3:40300703-40300722 | Msa1288030:intron | 40.0% |
! | GTTGGAGATATTGGATTGGA+TGG | - | chr8_3:40300822-40300841 | Msa1288030:CDS | 40.0% |
CTTGTTCATCTTAGTGGTAG+TGG | - | chr8_3:40300916-40300935 | Msa1288030:CDS | 40.0% | |
GGTAGTAGTTTATTCCTGGA+AGG | - | chr8_3:40300937-40300956 | Msa1288030:CDS | 40.0% | |
TGAAATCTGATGCCTTCACT+TGG | - | chr8_3:40301083-40301102 | Msa1288030:intron | 40.0% | |
CAAACACCAAAACCAAGTGA+AGG | + | chr8_3:40301098-40301117 | None:intergenic | 40.0% | |
!!! | ACTTGGTTTTGGTGTTTGAC+AGG | - | chr8_3:40301100-40301119 | Msa1288030:intron | 40.0% |
! | CATAAAGCTTTTTGCTGCGT+TGG | - | chr8_3:40299182-40299201 | Msa1288030:CDS | 40.0% |
!! | TTTGCTGCGTTGGTTTAAAC+TGG | - | chr8_3:40299192-40299211 | Msa1288030:CDS | 40.0% |
TCCTAATCAACATGCACTTC+AGG | + | chr8_3:40299255-40299274 | None:intergenic | 40.0% | |
! | CGTTTGGTTCAAGTTAGCAA+AGG | - | chr8_3:40299339-40299358 | Msa1288030:intron | 40.0% |
GCATCTAAGGATGACTTTAG+AGG | - | chr8_3:40299464-40299483 | Msa1288030:intron | 40.0% | |
AATTGCAAGGTAACAACTGC+TGG | - | chr8_3:40299510-40299529 | Msa1288030:intron | 40.0% | |
GGAAATGCCGAGAAATCTTT+GGG | - | chr8_3:40299537-40299556 | Msa1288030:intron | 40.0% | |
TTCACCACCCAAAGATTTCT+CGG | + | chr8_3:40299547-40299566 | None:intergenic | 40.0% | |
AGAAATCTTTGGGTGGTGAA+TGG | - | chr8_3:40299547-40299566 | Msa1288030:intron | 40.0% | |
TGTCTGACATACATCTTGGT+TGG | + | chr8_3:40299639-40299658 | None:intergenic | 40.0% | |
GATGTGTCTGACATACATCT+TGG | + | chr8_3:40299643-40299662 | None:intergenic | 40.0% | |
GGTGAGAAAAACACAAGAAG+GGG | - | chr8_3:40299778-40299797 | Msa1288030:intron | 40.0% | |
GTGAGAAAAACACAAGAAGG+GGG | - | chr8_3:40299779-40299798 | Msa1288030:intron | 40.0% | |
TGAGAAAAACACAAGAAGGG+GGG | - | chr8_3:40299780-40299799 | Msa1288030:intron | 40.0% | |
! | AAATCTCCTTGGAAGTGCAA+GGG | + | chr8_3:40300000-40300019 | None:intergenic | 40.0% |
ATACCCACTAACCATAATCC+AGG | + | chr8_3:40300455-40300474 | None:intergenic | 40.0% | |
!! | CTTCTGAGTTTTATCTGCGA+AGG | - | chr8_3:40300527-40300546 | Msa1288030:intron | 40.0% |
GTAATCACATGTGTCTGTGT+CGG | - | chr8_3:40300603-40300622 | Msa1288030:intron | 40.0% | |
! | TTGATGGTTGATCATTGCAG+AGG | - | chr8_3:40300703-40300722 | Msa1288030:intron | 40.0% |
! | GTTGGAGATATTGGATTGGA+TGG | - | chr8_3:40300822-40300841 | Msa1288030:CDS | 40.0% |
CTTGTTCATCTTAGTGGTAG+TGG | - | chr8_3:40300916-40300935 | Msa1288030:CDS | 40.0% | |
GGTAGTAGTTTATTCCTGGA+AGG | - | chr8_3:40300937-40300956 | Msa1288030:CDS | 40.0% | |
TGAAATCTGATGCCTTCACT+TGG | - | chr8_3:40301083-40301102 | Msa1288030:intron | 40.0% | |
CAAACACCAAAACCAAGTGA+AGG | + | chr8_3:40301098-40301117 | None:intergenic | 40.0% | |
!!! | ACTTGGTTTTGGTGTTTGAC+AGG | - | chr8_3:40301100-40301119 | Msa1288030:intron | 40.0% |
! | GCCTGAAGTGCATGTTGATT+AGG | - | chr8_3:40299251-40299270 | Msa1288030:intron | 45.0% |
GCTAACTTGAACCAAACGAC+TGG | + | chr8_3:40299337-40299356 | None:intergenic | 45.0% | |
CTTTCTCTTCAAGACCCTTC+TGG | + | chr8_3:40299445-40299464 | None:intergenic | 45.0% | |
GGGAAATGCCGAGAAATCTT+TGG | - | chr8_3:40299536-40299555 | Msa1288030:intron | 45.0% | |
AATGCCGAGAAATCTTTGGG+TGG | - | chr8_3:40299540-40299559 | Msa1288030:intron | 45.0% | |
ATAGACCGCGACTTACAAGA+GGG | - | chr8_3:40299582-40299601 | Msa1288030:intron | 45.0% | |
CTGACATACATCTTGGTTGG+TGG | + | chr8_3:40299636-40299655 | None:intergenic | 45.0% | |
ATGTATGTCAGACACATCCG+CGG | - | chr8_3:40299645-40299664 | Msa1288030:intron | 45.0% | |
CACCTCCTTTCGTTGTTTAC+TGG | + | chr8_3:40299671-40299690 | None:intergenic | 45.0% | |
CAGTAAACAACGAAAGGAGG+TGG | - | chr8_3:40299669-40299688 | Msa1288030:intron | 45.0% | |
!! | CGAAAGGAGGTGGTTACTTT+TGG | - | chr8_3:40299679-40299698 | Msa1288030:intron | 45.0% |
GAGAAAAACACAAGAAGGGG+GGG | - | chr8_3:40299781-40299800 | Msa1288030:intron | 45.0% | |
AGAAAAACACAAGAAGGGGG+GGG | - | chr8_3:40299782-40299801 | Msa1288030:intron | 45.0% | |
!! | TACTGGTTCCTTCCACAATC+CGG | - | chr8_3:40299960-40299979 | Msa1288030:intron | 45.0% |
! | AATCTCCTTGGAAGTGCAAG+GGG | + | chr8_3:40299999-40300018 | None:intergenic | 45.0% |
! | GAAATCTCCTTGGAAGTGCA+AGG | + | chr8_3:40300001-40300020 | None:intergenic | 45.0% |
! | TAGCTTGTGTGCTTGAGCAA+AGG | + | chr8_3:40300075-40300094 | None:intergenic | 45.0% |
GGTAGCTGATACACCAACAA+AGG | - | chr8_3:40300493-40300512 | Msa1288030:intron | 45.0% | |
CAGCTTGTAAATGGGGTCAT+GGG | - | chr8_3:40300749-40300768 | Msa1288030:CDS | 45.0% | |
TAAATGGGGTCATGGGATTG+AGG | - | chr8_3:40300756-40300775 | Msa1288030:CDS | 45.0% | |
GGATTGAGGTATAAGCGTGA+AGG | - | chr8_3:40300770-40300789 | Msa1288030:CDS | 45.0% | |
! | CTGATGCCTTCACTTGGTTT+TGG | - | chr8_3:40301089-40301108 | Msa1288030:intron | 45.0% |
TGAGGACTTTGTCCCAAGAA+CGG | - | chr8_3:40301187-40301206 | Msa1288030:intron | 45.0% | |
! | GCCTGAAGTGCATGTTGATT+AGG | - | chr8_3:40299251-40299270 | Msa1288030:intron | 45.0% |
GCTAACTTGAACCAAACGAC+TGG | + | chr8_3:40299337-40299356 | None:intergenic | 45.0% | |
CTTTCTCTTCAAGACCCTTC+TGG | + | chr8_3:40299445-40299464 | None:intergenic | 45.0% | |
GGGAAATGCCGAGAAATCTT+TGG | - | chr8_3:40299536-40299555 | Msa1288030:intron | 45.0% | |
AATGCCGAGAAATCTTTGGG+TGG | - | chr8_3:40299540-40299559 | Msa1288030:intron | 45.0% | |
ATAGACCGCGACTTACAAGA+GGG | - | chr8_3:40299582-40299601 | Msa1288030:intron | 45.0% | |
CTGACATACATCTTGGTTGG+TGG | + | chr8_3:40299636-40299655 | None:intergenic | 45.0% | |
ATGTATGTCAGACACATCCG+CGG | - | chr8_3:40299645-40299664 | Msa1288030:intron | 45.0% | |
CACCTCCTTTCGTTGTTTAC+TGG | + | chr8_3:40299671-40299690 | None:intergenic | 45.0% | |
CAGTAAACAACGAAAGGAGG+TGG | - | chr8_3:40299669-40299688 | Msa1288030:intron | 45.0% | |
!! | CGAAAGGAGGTGGTTACTTT+TGG | - | chr8_3:40299679-40299698 | Msa1288030:intron | 45.0% |
GAGAAAAACACAAGAAGGGG+GGG | - | chr8_3:40299781-40299800 | Msa1288030:intron | 45.0% | |
AGAAAAACACAAGAAGGGGG+GGG | - | chr8_3:40299782-40299801 | Msa1288030:intron | 45.0% | |
!! | TACTGGTTCCTTCCACAATC+CGG | - | chr8_3:40299960-40299979 | Msa1288030:intron | 45.0% |
! | AATCTCCTTGGAAGTGCAAG+GGG | + | chr8_3:40299999-40300018 | None:intergenic | 45.0% |
! | GAAATCTCCTTGGAAGTGCA+AGG | + | chr8_3:40300001-40300020 | None:intergenic | 45.0% |
! | TAGCTTGTGTGCTTGAGCAA+AGG | + | chr8_3:40300075-40300094 | None:intergenic | 45.0% |
GGTAGCTGATACACCAACAA+AGG | - | chr8_3:40300493-40300512 | Msa1288030:intron | 45.0% | |
CAGCTTGTAAATGGGGTCAT+GGG | - | chr8_3:40300749-40300768 | Msa1288030:CDS | 45.0% | |
TAAATGGGGTCATGGGATTG+AGG | - | chr8_3:40300756-40300775 | Msa1288030:CDS | 45.0% | |
GGATTGAGGTATAAGCGTGA+AGG | - | chr8_3:40300770-40300789 | Msa1288030:CDS | 45.0% | |
! | CTGATGCCTTCACTTGGTTT+TGG | - | chr8_3:40301089-40301108 | Msa1288030:intron | 45.0% |
TGAGGACTTTGTCCCAAGAA+CGG | - | chr8_3:40301187-40301206 | Msa1288030:intron | 45.0% | |
TGCACTTCAGGCCCTGTAAT+TGG | + | chr8_3:40299243-40299262 | None:intergenic | 50.0% | |
CAAGGTAACAACTGCTGGCA+GGG | - | chr8_3:40299515-40299534 | Msa1288030:intron | 50.0% | |
AAGGTAACAACTGCTGGCAG+GGG | - | chr8_3:40299516-40299535 | Msa1288030:intron | 50.0% | |
CATAGACCGCGACTTACAAG+AGG | - | chr8_3:40299581-40299600 | Msa1288030:intron | 50.0% | |
TGTCACCCTCTTGTAAGTCG+CGG | + | chr8_3:40299590-40299609 | None:intergenic | 50.0% | |
CTTTCGTTGTTTACTGGCCG+CGG | + | chr8_3:40299665-40299684 | None:intergenic | 50.0% | |
GGCCAGTAAACAACGAAAGG+AGG | - | chr8_3:40299666-40299685 | Msa1288030:intron | 50.0% | |
GAAAAACACAAGAAGGGGGG+GGG | - | chr8_3:40299783-40299802 | Msa1288030:intron | 50.0% | |
AAAAACACAAGAAGGGGGGG+GGG | - | chr8_3:40299784-40299803 | Msa1288030:intron | 50.0% | |
GACTACTTCCGGATTGTGGA+AGG | + | chr8_3:40299971-40299990 | None:intergenic | 50.0% | |
ACTGGACTACTTCCGGATTG+TGG | + | chr8_3:40299975-40299994 | None:intergenic | 50.0% | |
! | ATCTCCTTGGAAGTGCAAGG+GGG | + | chr8_3:40299998-40300017 | None:intergenic | 50.0% |
TCTTGCAGTTGTGCTTGAGC+AGG | + | chr8_3:40300135-40300154 | None:intergenic | 50.0% | |
TACGTTGTCCGTGTTCGTGT+CGG | + | chr8_3:40300554-40300573 | None:intergenic | 50.0% | |
CATGTGTCTGTGTCGGATAC+CGG | - | chr8_3:40300610-40300629 | Msa1288030:intron | 50.0% | |
GCAGCTTGTAAATGGGGTCA+TGG | - | chr8_3:40300748-40300767 | Msa1288030:CDS | 50.0% | |
TACTACATGCTTCCTGGCTC+TGG | - | chr8_3:40301163-40301182 | Msa1288030:intron | 50.0% | |
ACCTCATAAGGGCCGTTCTT+GGG | + | chr8_3:40301202-40301221 | None:intergenic | 50.0% | |
AACCTCATAAGGGCCGTTCT+TGG | + | chr8_3:40301203-40301222 | None:intergenic | 50.0% | |
TGCACTTCAGGCCCTGTAAT+TGG | + | chr8_3:40299243-40299262 | None:intergenic | 50.0% | |
CAAGGTAACAACTGCTGGCA+GGG | - | chr8_3:40299515-40299534 | Msa1288030:intron | 50.0% | |
AAGGTAACAACTGCTGGCAG+GGG | - | chr8_3:40299516-40299535 | Msa1288030:intron | 50.0% | |
CATAGACCGCGACTTACAAG+AGG | - | chr8_3:40299581-40299600 | Msa1288030:intron | 50.0% | |
TGTCACCCTCTTGTAAGTCG+CGG | + | chr8_3:40299590-40299609 | None:intergenic | 50.0% | |
CTTTCGTTGTTTACTGGCCG+CGG | + | chr8_3:40299665-40299684 | None:intergenic | 50.0% | |
GGCCAGTAAACAACGAAAGG+AGG | - | chr8_3:40299666-40299685 | Msa1288030:intron | 50.0% | |
GAAAAACACAAGAAGGGGGG+GGG | - | chr8_3:40299783-40299802 | Msa1288030:intron | 50.0% | |
AAAAACACAAGAAGGGGGGG+GGG | - | chr8_3:40299784-40299803 | Msa1288030:intron | 50.0% | |
GACTACTTCCGGATTGTGGA+AGG | + | chr8_3:40299971-40299990 | None:intergenic | 50.0% | |
ACTGGACTACTTCCGGATTG+TGG | + | chr8_3:40299975-40299994 | None:intergenic | 50.0% | |
! | ATCTCCTTGGAAGTGCAAGG+GGG | + | chr8_3:40299998-40300017 | None:intergenic | 50.0% |
TCTTGCAGTTGTGCTTGAGC+AGG | + | chr8_3:40300135-40300154 | None:intergenic | 50.0% | |
TACGTTGTCCGTGTTCGTGT+CGG | + | chr8_3:40300554-40300573 | None:intergenic | 50.0% | |
CATGTGTCTGTGTCGGATAC+CGG | - | chr8_3:40300610-40300629 | Msa1288030:intron | 50.0% | |
GCAGCTTGTAAATGGGGTCA+TGG | - | chr8_3:40300748-40300767 | Msa1288030:CDS | 50.0% | |
TACTACATGCTTCCTGGCTC+TGG | - | chr8_3:40301163-40301182 | Msa1288030:intron | 50.0% | |
ACCTCATAAGGGCCGTTCTT+GGG | + | chr8_3:40301202-40301221 | None:intergenic | 50.0% | |
AACCTCATAAGGGCCGTTCT+TGG | + | chr8_3:40301203-40301222 | None:intergenic | 50.0% | |
GCAAGGTAACAACTGCTGGC+AGG | - | chr8_3:40299514-40299533 | Msa1288030:intron | 55.0% | |
GCGACTTACAAGAGGGTGAC+AGG | - | chr8_3:40299589-40299608 | Msa1288030:intron | 55.0% | |
CGCGGCCAGTAAACAACGAA+AGG | - | chr8_3:40299663-40299682 | Msa1288030:intron | 55.0% | |
AAAACACAAGAAGGGGGGGG+GGG | - | chr8_3:40299785-40299804 | Msa1288030:intron | 55.0% | |
AAGGGGGACTGGACTACTTC+CGG | + | chr8_3:40299982-40300001 | None:intergenic | 55.0% | |
!! | ATGCTTCCTGGCTCTGGATG+AGG | - | chr8_3:40301169-40301188 | Msa1288030:intron | 55.0% |
CAAAGTCCTCATCCAGAGCC+AGG | + | chr8_3:40301178-40301197 | None:intergenic | 55.0% | |
TCCCAAGAACGGCCCTTATG+AGG | - | chr8_3:40301198-40301217 | Msa1288030:intron | 55.0% | |
GCAAGGTAACAACTGCTGGC+AGG | - | chr8_3:40299514-40299533 | Msa1288030:intron | 55.0% | |
GCGACTTACAAGAGGGTGAC+AGG | - | chr8_3:40299589-40299608 | Msa1288030:intron | 55.0% | |
CGCGGCCAGTAAACAACGAA+AGG | - | chr8_3:40299663-40299682 | Msa1288030:intron | 55.0% | |
AAAACACAAGAAGGGGGGGG+GGG | - | chr8_3:40299785-40299804 | Msa1288030:intron | 55.0% | |
AAGGGGGACTGGACTACTTC+CGG | + | chr8_3:40299982-40300001 | None:intergenic | 55.0% | |
!! | ATGCTTCCTGGCTCTGGATG+AGG | - | chr8_3:40301169-40301188 | Msa1288030:intron | 55.0% |
CAAAGTCCTCATCCAGAGCC+AGG | + | chr8_3:40301178-40301197 | None:intergenic | 55.0% | |
TCCCAAGAACGGCCCTTATG+AGG | - | chr8_3:40301198-40301217 | Msa1288030:intron | 55.0% | |
! | CTTGGAAGTGCAAGGGGGAC+TGG | + | chr8_3:40299993-40300012 | None:intergenic | 60.0% |
CAGTCCCCCTTGCACTTCCA+AGG | - | chr8_3:40299991-40300010 | Msa1288030:intron | 60.0% | |
GCGAAGGACCGACACGAACA+CGG | - | chr8_3:40300543-40300562 | Msa1288030:intron | 60.0% | |
! | CTTGGAAGTGCAAGGGGGAC+TGG | + | chr8_3:40299993-40300012 | None:intergenic | 60.0% |
CAGTCCCCCTTGCACTTCCA+AGG | - | chr8_3:40299991-40300010 | Msa1288030:intron | 60.0% | |
GCGAAGGACCGACACGAACA+CGG | - | chr8_3:40300543-40300562 | Msa1288030:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 40299159 | 40301229 | 40299159 | ID=Msa1288030;Name=Msa1288030 |
chr8_3 | mRNA | 40299159 | 40301229 | 40299159 | ID=Msa1288030-mRNA-1;Parent=Msa1288030;Name=Msa1288030-mRNA-1;_AED=0.82;_eAED=0.82;_QI=0|0|0|0.25|1|1|4|0|140 |
chr8_3 | exon | 40301215 | 40301229 | 40301215 | ID=Msa1288030-mRNA-1:exon:11155;Parent=Msa1288030-mRNA-1 |
chr8_3 | exon | 40300738 | 40300965 | 40300738 | ID=Msa1288030-mRNA-1:exon:11154;Parent=Msa1288030-mRNA-1 |
chr8_3 | exon | 40299874 | 40299945 | 40299874 | ID=Msa1288030-mRNA-1:exon:11153;Parent=Msa1288030-mRNA-1 |
chr8_3 | exon | 40299159 | 40299266 | 40299159 | ID=Msa1288030-mRNA-1:exon:11152;Parent=Msa1288030-mRNA-1 |
chr8_3 | CDS | 40301215 | 40301229 | 40301215 | ID=Msa1288030-mRNA-1:cds;Parent=Msa1288030-mRNA-1 |
chr8_3 | CDS | 40300738 | 40300965 | 40300738 | ID=Msa1288030-mRNA-1:cds;Parent=Msa1288030-mRNA-1 |
chr8_3 | CDS | 40299874 | 40299945 | 40299874 | ID=Msa1288030-mRNA-1:cds;Parent=Msa1288030-mRNA-1 |
chr8_3 | CDS | 40299159 | 40299266 | 40299159 | ID=Msa1288030-mRNA-1:cds;Parent=Msa1288030-mRNA-1 |
Gene Sequence |
Protein sequence |