AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1288030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1288030 MtrunA17_Chr5g0430431 61.194 67 26 0 15 81 187 253 6.49e-23 90.5
Msa1288030 MtrunA17_Chr2g0281511 30.000 80 56 0 2 81 36 115 4.45e-12 59.3
Msa1288030 MtrunA17_Chr2g0309121 28.750 80 56 1 2 81 36 114 9.95e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 41 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTCTTCAAGACCCTTC+TGG 0.245379 8_3:+40300924 None:intergenic
GTATAACTGCTGATGCTTAT+AGG 0.268733 8_3:-40299895 Msa1288030:CDS
TACTACATGCTTCCTGGCTC+TGG 0.321558 8_3:-40299203 Msa1288030:CDS
GGGAAATGCCGAGAAATCTT+TGG 0.331217 8_3:-40300830 Msa1288030:CDS
TATAACTGCTGATGCTTATA+GGG 0.337415 8_3:-40299894 Msa1288030:CDS
TGACAGGTTGATCTTTGATT+TGG 0.347996 8_3:-40300761 Msa1288030:CDS
ACCCTTCTGGATATTTGATT+AGG 0.353511 8_3:+40300937 None:intergenic
TCTTTATACTACATGCTTCC+TGG 0.373551 8_3:-40299209 Msa1288030:CDS
AAAACTAATTCAACCTCATA+AGG 0.373637 8_3:+40299155 None:intergenic
AACCTCATAAGGGCCGTTCT+TGG 0.384862 8_3:+40299166 None:intergenic
ACCTCATAAGGGCCGTTCTT+GGG 0.400908 8_3:+40299167 None:intergenic
TCTTGAAGAGAAAGCATCTA+AGG 0.410279 8_3:-40300915 Msa1288030:CDS
TTCACCACCCAAAGATTTCT+CGG 0.418046 8_3:+40300822 None:intergenic
CCCCAAAATGAAATCTTTGC+AGG 0.421235 8_3:-40301214 None:intergenic
ATGCTTCCTGGCTCTGGATG+AGG 0.442440 8_3:-40299197 Msa1288030:CDS
TCCCAAGAACGGCCCTTATG+AGG 0.443648 8_3:-40299168 Msa1288030:CDS
GCATCTAAGGATGACTTTAG+AGG 0.446637 8_3:-40300902 Msa1288030:CDS
GGAAATGCCGAGAAATCTTT+GGG 0.452916 8_3:-40300829 Msa1288030:CDS
TTTCCTGGATTATGGTTAGT+GGG 0.482593 8_3:-40299917 Msa1288030:CDS
AAACTAATTCAACCTCATAA+GGG 0.488840 8_3:+40299156 None:intergenic
GCAAGGTAACAACTGCTGGC+AGG 0.496049 8_3:-40300852 Msa1288030:CDS
CAAGGTAACAACTGCTGGCA+GGG 0.496914 8_3:-40300851 Msa1288030:CDS
AATTGCAAGGTAACAACTGC+TGG 0.501920 8_3:-40300856 Msa1288030:CDS
CAAAGTCCTCATCCAGAGCC+AGG 0.520756 8_3:+40299191 None:intergenic
AGAAATCTTTGGGTGGTGAA+TGG 0.523259 8_3:-40300819 Msa1288030:CDS
CTGACATACATCTTGGTTGG+TGG 0.524036 8_3:+40300733 None:intergenic
GCGACTTACAAGAGGGTGAC+AGG 0.538347 8_3:-40300777 Msa1288030:CDS
AGGAAGCATGTAGTATAAAG+AGG 0.544819 8_3:+40299211 None:intergenic
TTCCTAATCAAATATCCAGA+AGG 0.553976 8_3:-40300939 Msa1288030:CDS
ACACAAGACATTTAATTGCA+AGG 0.558204 8_3:-40300869 Msa1288030:CDS
ATACCCACTAACCATAATCC+AGG 0.578897 8_3:+40299914 None:intergenic
TCCTAATCAAATATCCAGAA+GGG 0.580669 8_3:-40300938 Msa1288030:CDS
AAGGTAACAACTGCTGGCAG+GGG 0.589193 8_3:-40300850 Msa1288030:CDS
TGAGGACTTTGTCCCAAGAA+CGG 0.605312 8_3:-40299179 Msa1288030:CDS
TGTCTGACATACATCTTGGT+TGG 0.618474 8_3:+40300730 None:intergenic
CATAGACCGCGACTTACAAG+AGG 0.631058 8_3:-40300785 Msa1288030:CDS
GATGTGTCTGACATACATCT+TGG 0.639510 8_3:+40300726 None:intergenic
GGTAGCTGATACACCAACAA+AGG 0.641422 8_3:-40299873 Msa1288030:intron
TGTCACCCTCTTGTAAGTCG+CGG 0.659906 8_3:+40300779 None:intergenic
AATGCCGAGAAATCTTTGGG+TGG 0.694777 8_3:-40300826 Msa1288030:CDS
ATAGACCGCGACTTACAAGA+GGG 0.718822 8_3:-40300784 Msa1288030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATATCTCCAATTACA+GGG - chr8_3:40299229-40299248 Msa1288030:CDS 20.0%
!! ATTACACAGAAAATTGTTTA+AGG - chr8_3:40300174-40300193 Msa1288030:intron 20.0%
!!! GTTTTTTTTCAATGATTTTG+TGG - chr8_3:40300664-40300683 Msa1288030:intron 20.0%
!! TATTAATATCTCCAATTACA+GGG - chr8_3:40299229-40299248 Msa1288030:CDS 20.0%
!! ATTACACAGAAAATTGTTTA+AGG - chr8_3:40300174-40300193 Msa1288030:intron 20.0%
!!! GTTTTTTTTCAATGATTTTG+TGG - chr8_3:40300664-40300683 Msa1288030:intron 20.0%
! CTATTAATATCTCCAATTAC+AGG - chr8_3:40299228-40299247 Msa1288030:CDS 25.0%
! ATGCTGTATAAAATGAAATG+TGG + chr8_3:40299406-40299425 None:intergenic 25.0%
!!! ACTACTTTAGAATCTATTGA+AGG - chr8_3:40299757-40299776 Msa1288030:intron 25.0%
!!! CTGTGTAATTTTGTTTAGTT+AGG + chr8_3:40300163-40300182 None:intergenic 25.0%
! NAAGAATGTTCAGAAACAAA+TGG - chr8_3:40300311-40300330 Msa1288030:intron 25.0%
! ATAATCATCAATCAGAAGAA+AGG + chr8_3:40300383-40300402 None:intergenic 25.0%
!!! AGAAAAAAAAGTACCTTTGT+TGG + chr8_3:40300509-40300528 None:intergenic 25.0%
!! TGTTTATACTGATTGTTTGA+TGG - chr8_3:40300687-40300706 Msa1288030:intron 25.0%
!!! TGTTTTTGTTGGTTTAAACA+AGG - chr8_3:40300870-40300889 Msa1288030:CDS 25.0%
!!! GTTTTTGTTGGTTTAAACAA+GGG - chr8_3:40300871-40300890 Msa1288030:CDS 25.0%
!! TTTTTACTTGTTCATCTTAG+TGG - chr8_3:40300910-40300929 Msa1288030:CDS 25.0%
! ATATATATTTCTTTCCTTCC+AGG + chr8_3:40300954-40300973 None:intergenic 25.0%
!! ATAATTTCAGAGCTTTTGTT+TGG - chr8_3:40301033-40301052 Msa1288030:intron 25.0%
!!! TGTTTGGAATTTTGCATTTT+TGG - chr8_3:40301049-40301068 Msa1288030:intron 25.0%
!!! GTTTGGAATTTTGCATTTTT+GGG - chr8_3:40301050-40301069 Msa1288030:intron 25.0%
!!! TTTGGAATTTTGCATTTTTG+GGG - chr8_3:40301051-40301070 Msa1288030:intron 25.0%
! CTATTAATATCTCCAATTAC+AGG - chr8_3:40299228-40299247 Msa1288030:CDS 25.0%
! ATGCTGTATAAAATGAAATG+TGG + chr8_3:40299406-40299425 None:intergenic 25.0%
!!! ACTACTTTAGAATCTATTGA+AGG - chr8_3:40299757-40299776 Msa1288030:intron 25.0%
!!! CTGTGTAATTTTGTTTAGTT+AGG + chr8_3:40300163-40300182 None:intergenic 25.0%
! NAAGAATGTTCAGAAACAAA+TGG - chr8_3:40300311-40300330 Msa1288030:intron 25.0%
! ATAATCATCAATCAGAAGAA+AGG + chr8_3:40300383-40300402 None:intergenic 25.0%
!!! AGAAAAAAAAGTACCTTTGT+TGG + chr8_3:40300509-40300528 None:intergenic 25.0%
!! TGTTTATACTGATTGTTTGA+TGG - chr8_3:40300687-40300706 Msa1288030:intron 25.0%
!!! TGTTTTTGTTGGTTTAAACA+AGG - chr8_3:40300870-40300889 Msa1288030:CDS 25.0%
!!! GTTTTTGTTGGTTTAAACAA+GGG - chr8_3:40300871-40300890 Msa1288030:CDS 25.0%
!! TTTTTACTTGTTCATCTTAG+TGG - chr8_3:40300910-40300929 Msa1288030:CDS 25.0%
! ATATATATTTCTTTCCTTCC+AGG + chr8_3:40300954-40300973 None:intergenic 25.0%
!! ATAATTTCAGAGCTTTTGTT+TGG - chr8_3:40301033-40301052 Msa1288030:intron 25.0%
!!! TGTTTGGAATTTTGCATTTT+TGG - chr8_3:40301049-40301068 Msa1288030:intron 25.0%
!!! GTTTGGAATTTTGCATTTTT+GGG - chr8_3:40301050-40301069 Msa1288030:intron 25.0%
!!! TTTGGAATTTTGCATTTTTG+GGG - chr8_3:40301051-40301070 Msa1288030:intron 25.0%
TTCCTAATCAAATATCCAGA+AGG - chr8_3:40299427-40299446 Msa1288030:intron 30.0%
TCCTAATCAAATATCCAGAA+GGG - chr8_3:40299428-40299447 Msa1288030:intron 30.0%
ACACAAGACATTTAATTGCA+AGG - chr8_3:40299497-40299516 Msa1288030:intron 30.0%
!!! ACTTTTGGAATTGAAGATGA+TGG - chr8_3:40299694-40299713 Msa1288030:intron 30.0%
!!! TGAAGATGATGGAAACATTT+TGG - chr8_3:40299705-40299724 Msa1288030:intron 30.0%
! TCTAAAGTAGTTGTGTTTGA+TGG + chr8_3:40299748-40299767 None:intergenic 30.0%
ATCAGTGTATTCAGTTGTTT+AGG + chr8_3:40299844-40299863 None:intergenic 30.0%
ACTACACAAAGCAATTATAC+TGG - chr8_3:40299943-40299962 Msa1288030:intron 30.0%
! TGTTTTCAGAATGTTTTTCC+TGG - chr8_3:40300434-40300453 Msa1288030:intron 30.0%
! AGAATGTTTTTCCTGGATTA+TGG - chr8_3:40300441-40300460 Msa1288030:intron 30.0%
TATAACTGCTGATGCTTATA+GGG - chr8_3:40300472-40300491 Msa1288030:intron 30.0%
! ATTGTAAAGAGAAAGTGTGA+AGG - chr8_3:40300795-40300814 Msa1288030:CDS 30.0%
AAATGTTGGAGATATTGGAT+TGG - chr8_3:40300818-40300837 Msa1288030:CDS 30.0%
!!! GCTAATTCTCTTGTTTTTGT+TGG - chr8_3:40300859-40300878 Msa1288030:CDS 30.0%
! AAACAAGGGTTTAGTTTAGT+TGG - chr8_3:40300885-40300904 Msa1288030:CDS 30.0%
!! TTGGAATTTTGCATTTTTGG+GGG - chr8_3:40301052-40301071 Msa1288030:intron 30.0%
TTCCTAATCAAATATCCAGA+AGG - chr8_3:40299427-40299446 Msa1288030:intron 30.0%
TCCTAATCAAATATCCAGAA+GGG - chr8_3:40299428-40299447 Msa1288030:intron 30.0%
ACACAAGACATTTAATTGCA+AGG - chr8_3:40299497-40299516 Msa1288030:intron 30.0%
!!! ACTTTTGGAATTGAAGATGA+TGG - chr8_3:40299694-40299713 Msa1288030:intron 30.0%
!!! TGAAGATGATGGAAACATTT+TGG - chr8_3:40299705-40299724 Msa1288030:intron 30.0%
! TCTAAAGTAGTTGTGTTTGA+TGG + chr8_3:40299748-40299767 None:intergenic 30.0%
ATCAGTGTATTCAGTTGTTT+AGG + chr8_3:40299844-40299863 None:intergenic 30.0%
ACTACACAAAGCAATTATAC+TGG - chr8_3:40299943-40299962 Msa1288030:intron 30.0%
! TGTTTTCAGAATGTTTTTCC+TGG - chr8_3:40300434-40300453 Msa1288030:intron 30.0%
! AGAATGTTTTTCCTGGATTA+TGG - chr8_3:40300441-40300460 Msa1288030:intron 30.0%
TATAACTGCTGATGCTTATA+GGG - chr8_3:40300472-40300491 Msa1288030:intron 30.0%
! ATTGTAAAGAGAAAGTGTGA+AGG - chr8_3:40300795-40300814 Msa1288030:CDS 30.0%
AAATGTTGGAGATATTGGAT+TGG - chr8_3:40300818-40300837 Msa1288030:CDS 30.0%
!!! GCTAATTCTCTTGTTTTTGT+TGG - chr8_3:40300859-40300878 Msa1288030:CDS 30.0%
! AAACAAGGGTTTAGTTTAGT+TGG - chr8_3:40300885-40300904 Msa1288030:CDS 30.0%
!! TTGGAATTTTGCATTTTTGG+GGG - chr8_3:40301052-40301071 Msa1288030:intron 30.0%
! TTTTATGCATTCCAGTCGTT+TGG - chr8_3:40299323-40299342 Msa1288030:intron 35.0%
! GTTTGGTTCAAGTTAGCAAA+GGG - chr8_3:40299340-40299359 Msa1288030:intron 35.0%
ACCCTTCTGGATATTTGATT+AGG + chr8_3:40299432-40299451 None:intergenic 35.0%
!! TCTTGAAGAGAAAGCATCTA+AGG - chr8_3:40299451-40299470 Msa1288030:intron 35.0%
!! TGACAGGTTGATCTTTGATT+TGG - chr8_3:40299605-40299624 Msa1288030:intron 35.0%
AAGGTGAGAAAAACACAAGA+AGG - chr8_3:40299776-40299795 Msa1288030:intron 35.0%
AGGTGAGAAAAACACAAGAA+GGG - chr8_3:40299777-40299796 Msa1288030:intron 35.0%
TGATCAGAATCTAAATGCAG+CGG - chr8_3:40299895-40299914 Msa1288030:CDS 35.0%
TACTCTTAGTGAAATCTCCT+TGG + chr8_3:40300011-40300030 None:intergenic 35.0%
TTGATTGTGTTCTTGAGCAA+AGG + chr8_3:40300105-40300124 None:intergenic 35.0%
! TTTTCCTGGATTATGGTTAG+TGG - chr8_3:40300448-40300467 Msa1288030:intron 35.0%
TTTCCTGGATTATGGTTAGT+GGG - chr8_3:40300449-40300468 Msa1288030:intron 35.0%
GTATAACTGCTGATGCTTAT+AGG - chr8_3:40300471-40300490 Msa1288030:intron 35.0%
CATCTTATCAAATGTGTGTC+CGG + chr8_3:40300632-40300651 None:intergenic 35.0%
! TGATAAGATGTGTTGATGTG+AGG - chr8_3:40300642-40300661 Msa1288030:intron 35.0%
AGTGAATTGCAGCTTGTAAA+TGG - chr8_3:40300740-40300759 Msa1288030:CDS 35.0%
GTGAATTGCAGCTTGTAAAT+GGG - chr8_3:40300741-40300760 Msa1288030:CDS 35.0%
TGAATTGCAGCTTGTAAATG+GGG - chr8_3:40300742-40300761 Msa1288030:CDS 35.0%
! AGAAAGTGTGAAGGAAATGT+TGG - chr8_3:40300804-40300823 Msa1288030:CDS 35.0%
GAAGGAAATGTTGGAGATAT+TGG - chr8_3:40300813-40300832 Msa1288030:CDS 35.0%
TAGTGGTAGTAGTTTATTCC+TGG - chr8_3:40300933-40300952 Msa1288030:CDS 35.0%
!! TGGAATTTTGCATTTTTGGG+GGG - chr8_3:40301053-40301072 Msa1288030:intron 35.0%
! AGGAAGCATGTAGTATAAAG+AGG + chr8_3:40301158-40301177 None:intergenic 35.0%
TCTTTATACTACATGCTTCC+TGG - chr8_3:40301157-40301176 Msa1288030:intron 35.0%
! TTTTATGCATTCCAGTCGTT+TGG - chr8_3:40299323-40299342 Msa1288030:intron 35.0%
! GTTTGGTTCAAGTTAGCAAA+GGG - chr8_3:40299340-40299359 Msa1288030:intron 35.0%
ACCCTTCTGGATATTTGATT+AGG + chr8_3:40299432-40299451 None:intergenic 35.0%
!! TCTTGAAGAGAAAGCATCTA+AGG - chr8_3:40299451-40299470 Msa1288030:intron 35.0%
!! TGACAGGTTGATCTTTGATT+TGG - chr8_3:40299605-40299624 Msa1288030:intron 35.0%
AAGGTGAGAAAAACACAAGA+AGG - chr8_3:40299776-40299795 Msa1288030:intron 35.0%
AGGTGAGAAAAACACAAGAA+GGG - chr8_3:40299777-40299796 Msa1288030:intron 35.0%
TGATCAGAATCTAAATGCAG+CGG - chr8_3:40299895-40299914 Msa1288030:CDS 35.0%
TACTCTTAGTGAAATCTCCT+TGG + chr8_3:40300011-40300030 None:intergenic 35.0%
TTGATTGTGTTCTTGAGCAA+AGG + chr8_3:40300105-40300124 None:intergenic 35.0%
! TTTTCCTGGATTATGGTTAG+TGG - chr8_3:40300448-40300467 Msa1288030:intron 35.0%
TTTCCTGGATTATGGTTAGT+GGG - chr8_3:40300449-40300468 Msa1288030:intron 35.0%
GTATAACTGCTGATGCTTAT+AGG - chr8_3:40300471-40300490 Msa1288030:intron 35.0%
CATCTTATCAAATGTGTGTC+CGG + chr8_3:40300632-40300651 None:intergenic 35.0%
! TGATAAGATGTGTTGATGTG+AGG - chr8_3:40300642-40300661 Msa1288030:intron 35.0%
AGTGAATTGCAGCTTGTAAA+TGG - chr8_3:40300740-40300759 Msa1288030:CDS 35.0%
GTGAATTGCAGCTTGTAAAT+GGG - chr8_3:40300741-40300760 Msa1288030:CDS 35.0%
TGAATTGCAGCTTGTAAATG+GGG - chr8_3:40300742-40300761 Msa1288030:CDS 35.0%
! AGAAAGTGTGAAGGAAATGT+TGG - chr8_3:40300804-40300823 Msa1288030:CDS 35.0%
GAAGGAAATGTTGGAGATAT+TGG - chr8_3:40300813-40300832 Msa1288030:CDS 35.0%
TAGTGGTAGTAGTTTATTCC+TGG - chr8_3:40300933-40300952 Msa1288030:CDS 35.0%
!! TGGAATTTTGCATTTTTGGG+GGG - chr8_3:40301053-40301072 Msa1288030:intron 35.0%
! AGGAAGCATGTAGTATAAAG+AGG + chr8_3:40301158-40301177 None:intergenic 35.0%
TCTTTATACTACATGCTTCC+TGG - chr8_3:40301157-40301176 Msa1288030:intron 35.0%
! CATAAAGCTTTTTGCTGCGT+TGG - chr8_3:40299182-40299201 Msa1288030:CDS 40.0%
!! TTTGCTGCGTTGGTTTAAAC+TGG - chr8_3:40299192-40299211 Msa1288030:CDS 40.0%
TCCTAATCAACATGCACTTC+AGG + chr8_3:40299255-40299274 None:intergenic 40.0%
! CGTTTGGTTCAAGTTAGCAA+AGG - chr8_3:40299339-40299358 Msa1288030:intron 40.0%
GCATCTAAGGATGACTTTAG+AGG - chr8_3:40299464-40299483 Msa1288030:intron 40.0%
AATTGCAAGGTAACAACTGC+TGG - chr8_3:40299510-40299529 Msa1288030:intron 40.0%
GGAAATGCCGAGAAATCTTT+GGG - chr8_3:40299537-40299556 Msa1288030:intron 40.0%
TTCACCACCCAAAGATTTCT+CGG + chr8_3:40299547-40299566 None:intergenic 40.0%
AGAAATCTTTGGGTGGTGAA+TGG - chr8_3:40299547-40299566 Msa1288030:intron 40.0%
TGTCTGACATACATCTTGGT+TGG + chr8_3:40299639-40299658 None:intergenic 40.0%
GATGTGTCTGACATACATCT+TGG + chr8_3:40299643-40299662 None:intergenic 40.0%
GGTGAGAAAAACACAAGAAG+GGG - chr8_3:40299778-40299797 Msa1288030:intron 40.0%
GTGAGAAAAACACAAGAAGG+GGG - chr8_3:40299779-40299798 Msa1288030:intron 40.0%
TGAGAAAAACACAAGAAGGG+GGG - chr8_3:40299780-40299799 Msa1288030:intron 40.0%
! AAATCTCCTTGGAAGTGCAA+GGG + chr8_3:40300000-40300019 None:intergenic 40.0%
ATACCCACTAACCATAATCC+AGG + chr8_3:40300455-40300474 None:intergenic 40.0%
!! CTTCTGAGTTTTATCTGCGA+AGG - chr8_3:40300527-40300546 Msa1288030:intron 40.0%
GTAATCACATGTGTCTGTGT+CGG - chr8_3:40300603-40300622 Msa1288030:intron 40.0%
! TTGATGGTTGATCATTGCAG+AGG - chr8_3:40300703-40300722 Msa1288030:intron 40.0%
! GTTGGAGATATTGGATTGGA+TGG - chr8_3:40300822-40300841 Msa1288030:CDS 40.0%
CTTGTTCATCTTAGTGGTAG+TGG - chr8_3:40300916-40300935 Msa1288030:CDS 40.0%
GGTAGTAGTTTATTCCTGGA+AGG - chr8_3:40300937-40300956 Msa1288030:CDS 40.0%
TGAAATCTGATGCCTTCACT+TGG - chr8_3:40301083-40301102 Msa1288030:intron 40.0%
CAAACACCAAAACCAAGTGA+AGG + chr8_3:40301098-40301117 None:intergenic 40.0%
!!! ACTTGGTTTTGGTGTTTGAC+AGG - chr8_3:40301100-40301119 Msa1288030:intron 40.0%
! CATAAAGCTTTTTGCTGCGT+TGG - chr8_3:40299182-40299201 Msa1288030:CDS 40.0%
!! TTTGCTGCGTTGGTTTAAAC+TGG - chr8_3:40299192-40299211 Msa1288030:CDS 40.0%
TCCTAATCAACATGCACTTC+AGG + chr8_3:40299255-40299274 None:intergenic 40.0%
! CGTTTGGTTCAAGTTAGCAA+AGG - chr8_3:40299339-40299358 Msa1288030:intron 40.0%
GCATCTAAGGATGACTTTAG+AGG - chr8_3:40299464-40299483 Msa1288030:intron 40.0%
AATTGCAAGGTAACAACTGC+TGG - chr8_3:40299510-40299529 Msa1288030:intron 40.0%
GGAAATGCCGAGAAATCTTT+GGG - chr8_3:40299537-40299556 Msa1288030:intron 40.0%
TTCACCACCCAAAGATTTCT+CGG + chr8_3:40299547-40299566 None:intergenic 40.0%
AGAAATCTTTGGGTGGTGAA+TGG - chr8_3:40299547-40299566 Msa1288030:intron 40.0%
TGTCTGACATACATCTTGGT+TGG + chr8_3:40299639-40299658 None:intergenic 40.0%
GATGTGTCTGACATACATCT+TGG + chr8_3:40299643-40299662 None:intergenic 40.0%
GGTGAGAAAAACACAAGAAG+GGG - chr8_3:40299778-40299797 Msa1288030:intron 40.0%
GTGAGAAAAACACAAGAAGG+GGG - chr8_3:40299779-40299798 Msa1288030:intron 40.0%
TGAGAAAAACACAAGAAGGG+GGG - chr8_3:40299780-40299799 Msa1288030:intron 40.0%
! AAATCTCCTTGGAAGTGCAA+GGG + chr8_3:40300000-40300019 None:intergenic 40.0%
ATACCCACTAACCATAATCC+AGG + chr8_3:40300455-40300474 None:intergenic 40.0%
!! CTTCTGAGTTTTATCTGCGA+AGG - chr8_3:40300527-40300546 Msa1288030:intron 40.0%
GTAATCACATGTGTCTGTGT+CGG - chr8_3:40300603-40300622 Msa1288030:intron 40.0%
! TTGATGGTTGATCATTGCAG+AGG - chr8_3:40300703-40300722 Msa1288030:intron 40.0%
! GTTGGAGATATTGGATTGGA+TGG - chr8_3:40300822-40300841 Msa1288030:CDS 40.0%
CTTGTTCATCTTAGTGGTAG+TGG - chr8_3:40300916-40300935 Msa1288030:CDS 40.0%
GGTAGTAGTTTATTCCTGGA+AGG - chr8_3:40300937-40300956 Msa1288030:CDS 40.0%
TGAAATCTGATGCCTTCACT+TGG - chr8_3:40301083-40301102 Msa1288030:intron 40.0%
CAAACACCAAAACCAAGTGA+AGG + chr8_3:40301098-40301117 None:intergenic 40.0%
!!! ACTTGGTTTTGGTGTTTGAC+AGG - chr8_3:40301100-40301119 Msa1288030:intron 40.0%
! GCCTGAAGTGCATGTTGATT+AGG - chr8_3:40299251-40299270 Msa1288030:intron 45.0%
GCTAACTTGAACCAAACGAC+TGG + chr8_3:40299337-40299356 None:intergenic 45.0%
CTTTCTCTTCAAGACCCTTC+TGG + chr8_3:40299445-40299464 None:intergenic 45.0%
GGGAAATGCCGAGAAATCTT+TGG - chr8_3:40299536-40299555 Msa1288030:intron 45.0%
AATGCCGAGAAATCTTTGGG+TGG - chr8_3:40299540-40299559 Msa1288030:intron 45.0%
ATAGACCGCGACTTACAAGA+GGG - chr8_3:40299582-40299601 Msa1288030:intron 45.0%
CTGACATACATCTTGGTTGG+TGG + chr8_3:40299636-40299655 None:intergenic 45.0%
ATGTATGTCAGACACATCCG+CGG - chr8_3:40299645-40299664 Msa1288030:intron 45.0%
CACCTCCTTTCGTTGTTTAC+TGG + chr8_3:40299671-40299690 None:intergenic 45.0%
CAGTAAACAACGAAAGGAGG+TGG - chr8_3:40299669-40299688 Msa1288030:intron 45.0%
!! CGAAAGGAGGTGGTTACTTT+TGG - chr8_3:40299679-40299698 Msa1288030:intron 45.0%
GAGAAAAACACAAGAAGGGG+GGG - chr8_3:40299781-40299800 Msa1288030:intron 45.0%
AGAAAAACACAAGAAGGGGG+GGG - chr8_3:40299782-40299801 Msa1288030:intron 45.0%
!! TACTGGTTCCTTCCACAATC+CGG - chr8_3:40299960-40299979 Msa1288030:intron 45.0%
! AATCTCCTTGGAAGTGCAAG+GGG + chr8_3:40299999-40300018 None:intergenic 45.0%
! GAAATCTCCTTGGAAGTGCA+AGG + chr8_3:40300001-40300020 None:intergenic 45.0%
! TAGCTTGTGTGCTTGAGCAA+AGG + chr8_3:40300075-40300094 None:intergenic 45.0%
GGTAGCTGATACACCAACAA+AGG - chr8_3:40300493-40300512 Msa1288030:intron 45.0%
CAGCTTGTAAATGGGGTCAT+GGG - chr8_3:40300749-40300768 Msa1288030:CDS 45.0%
TAAATGGGGTCATGGGATTG+AGG - chr8_3:40300756-40300775 Msa1288030:CDS 45.0%
GGATTGAGGTATAAGCGTGA+AGG - chr8_3:40300770-40300789 Msa1288030:CDS 45.0%
! CTGATGCCTTCACTTGGTTT+TGG - chr8_3:40301089-40301108 Msa1288030:intron 45.0%
TGAGGACTTTGTCCCAAGAA+CGG - chr8_3:40301187-40301206 Msa1288030:intron 45.0%
! GCCTGAAGTGCATGTTGATT+AGG - chr8_3:40299251-40299270 Msa1288030:intron 45.0%
GCTAACTTGAACCAAACGAC+TGG + chr8_3:40299337-40299356 None:intergenic 45.0%
CTTTCTCTTCAAGACCCTTC+TGG + chr8_3:40299445-40299464 None:intergenic 45.0%
GGGAAATGCCGAGAAATCTT+TGG - chr8_3:40299536-40299555 Msa1288030:intron 45.0%
AATGCCGAGAAATCTTTGGG+TGG - chr8_3:40299540-40299559 Msa1288030:intron 45.0%
ATAGACCGCGACTTACAAGA+GGG - chr8_3:40299582-40299601 Msa1288030:intron 45.0%
CTGACATACATCTTGGTTGG+TGG + chr8_3:40299636-40299655 None:intergenic 45.0%
ATGTATGTCAGACACATCCG+CGG - chr8_3:40299645-40299664 Msa1288030:intron 45.0%
CACCTCCTTTCGTTGTTTAC+TGG + chr8_3:40299671-40299690 None:intergenic 45.0%
CAGTAAACAACGAAAGGAGG+TGG - chr8_3:40299669-40299688 Msa1288030:intron 45.0%
!! CGAAAGGAGGTGGTTACTTT+TGG - chr8_3:40299679-40299698 Msa1288030:intron 45.0%
GAGAAAAACACAAGAAGGGG+GGG - chr8_3:40299781-40299800 Msa1288030:intron 45.0%
AGAAAAACACAAGAAGGGGG+GGG - chr8_3:40299782-40299801 Msa1288030:intron 45.0%
!! TACTGGTTCCTTCCACAATC+CGG - chr8_3:40299960-40299979 Msa1288030:intron 45.0%
! AATCTCCTTGGAAGTGCAAG+GGG + chr8_3:40299999-40300018 None:intergenic 45.0%
! GAAATCTCCTTGGAAGTGCA+AGG + chr8_3:40300001-40300020 None:intergenic 45.0%
! TAGCTTGTGTGCTTGAGCAA+AGG + chr8_3:40300075-40300094 None:intergenic 45.0%
GGTAGCTGATACACCAACAA+AGG - chr8_3:40300493-40300512 Msa1288030:intron 45.0%
CAGCTTGTAAATGGGGTCAT+GGG - chr8_3:40300749-40300768 Msa1288030:CDS 45.0%
TAAATGGGGTCATGGGATTG+AGG - chr8_3:40300756-40300775 Msa1288030:CDS 45.0%
GGATTGAGGTATAAGCGTGA+AGG - chr8_3:40300770-40300789 Msa1288030:CDS 45.0%
! CTGATGCCTTCACTTGGTTT+TGG - chr8_3:40301089-40301108 Msa1288030:intron 45.0%
TGAGGACTTTGTCCCAAGAA+CGG - chr8_3:40301187-40301206 Msa1288030:intron 45.0%
TGCACTTCAGGCCCTGTAAT+TGG + chr8_3:40299243-40299262 None:intergenic 50.0%
CAAGGTAACAACTGCTGGCA+GGG - chr8_3:40299515-40299534 Msa1288030:intron 50.0%
AAGGTAACAACTGCTGGCAG+GGG - chr8_3:40299516-40299535 Msa1288030:intron 50.0%
CATAGACCGCGACTTACAAG+AGG - chr8_3:40299581-40299600 Msa1288030:intron 50.0%
TGTCACCCTCTTGTAAGTCG+CGG + chr8_3:40299590-40299609 None:intergenic 50.0%
CTTTCGTTGTTTACTGGCCG+CGG + chr8_3:40299665-40299684 None:intergenic 50.0%
GGCCAGTAAACAACGAAAGG+AGG - chr8_3:40299666-40299685 Msa1288030:intron 50.0%
GAAAAACACAAGAAGGGGGG+GGG - chr8_3:40299783-40299802 Msa1288030:intron 50.0%
AAAAACACAAGAAGGGGGGG+GGG - chr8_3:40299784-40299803 Msa1288030:intron 50.0%
GACTACTTCCGGATTGTGGA+AGG + chr8_3:40299971-40299990 None:intergenic 50.0%
ACTGGACTACTTCCGGATTG+TGG + chr8_3:40299975-40299994 None:intergenic 50.0%
! ATCTCCTTGGAAGTGCAAGG+GGG + chr8_3:40299998-40300017 None:intergenic 50.0%
TCTTGCAGTTGTGCTTGAGC+AGG + chr8_3:40300135-40300154 None:intergenic 50.0%
TACGTTGTCCGTGTTCGTGT+CGG + chr8_3:40300554-40300573 None:intergenic 50.0%
CATGTGTCTGTGTCGGATAC+CGG - chr8_3:40300610-40300629 Msa1288030:intron 50.0%
GCAGCTTGTAAATGGGGTCA+TGG - chr8_3:40300748-40300767 Msa1288030:CDS 50.0%
TACTACATGCTTCCTGGCTC+TGG - chr8_3:40301163-40301182 Msa1288030:intron 50.0%
ACCTCATAAGGGCCGTTCTT+GGG + chr8_3:40301202-40301221 None:intergenic 50.0%
AACCTCATAAGGGCCGTTCT+TGG + chr8_3:40301203-40301222 None:intergenic 50.0%
TGCACTTCAGGCCCTGTAAT+TGG + chr8_3:40299243-40299262 None:intergenic 50.0%
CAAGGTAACAACTGCTGGCA+GGG - chr8_3:40299515-40299534 Msa1288030:intron 50.0%
AAGGTAACAACTGCTGGCAG+GGG - chr8_3:40299516-40299535 Msa1288030:intron 50.0%
CATAGACCGCGACTTACAAG+AGG - chr8_3:40299581-40299600 Msa1288030:intron 50.0%
TGTCACCCTCTTGTAAGTCG+CGG + chr8_3:40299590-40299609 None:intergenic 50.0%
CTTTCGTTGTTTACTGGCCG+CGG + chr8_3:40299665-40299684 None:intergenic 50.0%
GGCCAGTAAACAACGAAAGG+AGG - chr8_3:40299666-40299685 Msa1288030:intron 50.0%
GAAAAACACAAGAAGGGGGG+GGG - chr8_3:40299783-40299802 Msa1288030:intron 50.0%
AAAAACACAAGAAGGGGGGG+GGG - chr8_3:40299784-40299803 Msa1288030:intron 50.0%
GACTACTTCCGGATTGTGGA+AGG + chr8_3:40299971-40299990 None:intergenic 50.0%
ACTGGACTACTTCCGGATTG+TGG + chr8_3:40299975-40299994 None:intergenic 50.0%
! ATCTCCTTGGAAGTGCAAGG+GGG + chr8_3:40299998-40300017 None:intergenic 50.0%
TCTTGCAGTTGTGCTTGAGC+AGG + chr8_3:40300135-40300154 None:intergenic 50.0%
TACGTTGTCCGTGTTCGTGT+CGG + chr8_3:40300554-40300573 None:intergenic 50.0%
CATGTGTCTGTGTCGGATAC+CGG - chr8_3:40300610-40300629 Msa1288030:intron 50.0%
GCAGCTTGTAAATGGGGTCA+TGG - chr8_3:40300748-40300767 Msa1288030:CDS 50.0%
TACTACATGCTTCCTGGCTC+TGG - chr8_3:40301163-40301182 Msa1288030:intron 50.0%
ACCTCATAAGGGCCGTTCTT+GGG + chr8_3:40301202-40301221 None:intergenic 50.0%
AACCTCATAAGGGCCGTTCT+TGG + chr8_3:40301203-40301222 None:intergenic 50.0%
GCAAGGTAACAACTGCTGGC+AGG - chr8_3:40299514-40299533 Msa1288030:intron 55.0%
GCGACTTACAAGAGGGTGAC+AGG - chr8_3:40299589-40299608 Msa1288030:intron 55.0%
CGCGGCCAGTAAACAACGAA+AGG - chr8_3:40299663-40299682 Msa1288030:intron 55.0%
AAAACACAAGAAGGGGGGGG+GGG - chr8_3:40299785-40299804 Msa1288030:intron 55.0%
AAGGGGGACTGGACTACTTC+CGG + chr8_3:40299982-40300001 None:intergenic 55.0%
!! ATGCTTCCTGGCTCTGGATG+AGG - chr8_3:40301169-40301188 Msa1288030:intron 55.0%
CAAAGTCCTCATCCAGAGCC+AGG + chr8_3:40301178-40301197 None:intergenic 55.0%
TCCCAAGAACGGCCCTTATG+AGG - chr8_3:40301198-40301217 Msa1288030:intron 55.0%
GCAAGGTAACAACTGCTGGC+AGG - chr8_3:40299514-40299533 Msa1288030:intron 55.0%
GCGACTTACAAGAGGGTGAC+AGG - chr8_3:40299589-40299608 Msa1288030:intron 55.0%
CGCGGCCAGTAAACAACGAA+AGG - chr8_3:40299663-40299682 Msa1288030:intron 55.0%
AAAACACAAGAAGGGGGGGG+GGG - chr8_3:40299785-40299804 Msa1288030:intron 55.0%
AAGGGGGACTGGACTACTTC+CGG + chr8_3:40299982-40300001 None:intergenic 55.0%
!! ATGCTTCCTGGCTCTGGATG+AGG - chr8_3:40301169-40301188 Msa1288030:intron 55.0%
CAAAGTCCTCATCCAGAGCC+AGG + chr8_3:40301178-40301197 None:intergenic 55.0%
TCCCAAGAACGGCCCTTATG+AGG - chr8_3:40301198-40301217 Msa1288030:intron 55.0%
! CTTGGAAGTGCAAGGGGGAC+TGG + chr8_3:40299993-40300012 None:intergenic 60.0%
CAGTCCCCCTTGCACTTCCA+AGG - chr8_3:40299991-40300010 Msa1288030:intron 60.0%
GCGAAGGACCGACACGAACA+CGG - chr8_3:40300543-40300562 Msa1288030:intron 60.0%
! CTTGGAAGTGCAAGGGGGAC+TGG + chr8_3:40299993-40300012 None:intergenic 60.0%
CAGTCCCCCTTGCACTTCCA+AGG - chr8_3:40299991-40300010 Msa1288030:intron 60.0%
GCGAAGGACCGACACGAACA+CGG - chr8_3:40300543-40300562 Msa1288030:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 40299159 40301229 40299159 ID=Msa1288030;Name=Msa1288030
chr8_3 mRNA 40299159 40301229 40299159 ID=Msa1288030-mRNA-1;Parent=Msa1288030;Name=Msa1288030-mRNA-1;_AED=0.82;_eAED=0.82;_QI=0|0|0|0.25|1|1|4|0|140
chr8_3 exon 40301215 40301229 40301215 ID=Msa1288030-mRNA-1:exon:11155;Parent=Msa1288030-mRNA-1
chr8_3 exon 40300738 40300965 40300738 ID=Msa1288030-mRNA-1:exon:11154;Parent=Msa1288030-mRNA-1
chr8_3 exon 40299874 40299945 40299874 ID=Msa1288030-mRNA-1:exon:11153;Parent=Msa1288030-mRNA-1
chr8_3 exon 40299159 40299266 40299159 ID=Msa1288030-mRNA-1:exon:11152;Parent=Msa1288030-mRNA-1
chr8_3 CDS 40301215 40301229 40301215 ID=Msa1288030-mRNA-1:cds;Parent=Msa1288030-mRNA-1
chr8_3 CDS 40300738 40300965 40300738 ID=Msa1288030-mRNA-1:cds;Parent=Msa1288030-mRNA-1
chr8_3 CDS 40299874 40299945 40299874 ID=Msa1288030-mRNA-1:cds;Parent=Msa1288030-mRNA-1
chr8_3 CDS 40299159 40299266 40299159 ID=Msa1288030-mRNA-1:cds;Parent=Msa1288030-mRNA-1
Gene Sequence

>Msa1288030

ATGAAATCTTTGCAGCATTTTCCTAATCAAATATCCAGAAGGGTCTTGAAGAGAAAGCATCTAAGGATGACTTTAGAGGATGTCGAGACACACAAGACATTTAATTGCAAGGTAACAACTGCTGGCAGGGGAAATGCCGAGAAATCTTTGGGTGGTGAATGGTCTGACTTCATCATAGACCGCGACTTACAAGAGGGTGACAGGTTGATCTTTGATTTGGAAGATCCACCAACCAAGATGTATAATGTTTTTCCTGGATTATGGTTAGTGGGTATAACTGCTGATGCTTATAGGGTAGCTGATACACCAACAAAGGCTTGTAGCAAGCTTGTAGTTAAGCTAGCAAAGCCTCTTTATACTACATGCTTCCTGGCTCTGGATGAGGACTTTGTCCCAAGAACGGCCCTTATGAGGTTGAATTAG

Protein sequence

>Msa1288030

MKSLQHFPNQISRRVLKRKHLRMTLEDVETHKTFNCKVTTAGRGNAEKSLGGEWSDFIIDRDLQEGDRLIFDLEDPPTKMYNVFPGLWLVGITADAYRVADTPTKACSKLVVKLAKPLYTTCFLALDEDFVPRTALMRLN*