AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0846230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846230 MtrunA17_Chr5g0417851 97.380 229 6 0 1 229 1 229 2.66e-160 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846230 AT3G52220.1 64.384 219 70 5 1 213 1 217 1.02e-90 267

Find 101 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTCCATTTCTTCATTT+TGG 0.047448 5_4:+25974021 None:intergenic
GATTCATCTTCAATCTTTCT+TGG 0.204880 5_4:+25971663 None:intergenic
GGATATTGGCACTGCCATTT+TGG 0.220465 5_4:-25971334 Msa0846230:three_prime_UTR
ATTTACCGTTATCACTTATC+TGG 0.264081 5_4:-25971355 Msa0846230:three_prime_UTR
ACCACATAATAATGCCAAAA+TGG 0.304773 5_4:+25971320 None:intergenic
GTTATCACTTATCTGGATAT+TGG 0.318357 5_4:-25971348 Msa0846230:three_prime_UTR
TTCTCTTTGTATTTATAGTT+AGG 0.342744 5_4:-25971202 Msa0846230:three_prime_UTR
ATCTTTCTTGGTGATTGATT+AGG 0.343246 5_4:+25971675 None:intergenic
CGAACCCCTTTAGTTCTTGT+TGG 0.362773 5_4:-25976031 Msa0846230:five_prime_UTR
TAACGGTAAATACAGGCTTC+TGG 0.371032 5_4:+25971367 None:intergenic
AAAAGAGAAGACGGGAAGAA+AGG 0.371187 5_4:-25971623 Msa0846230:CDS
TCAAAGGCCCCTCAATTTAT+CGG 0.374816 5_4:+25971007 None:intergenic
CTCTTGCTTTCTTTCCTCAC+GGG 0.394011 5_4:+25971572 None:intergenic
CGAGTTGGATGATACATGTT+TGG 0.404504 5_4:+25975946 None:intergenic
GATTGAATACTCACTCCTCT+TGG 0.405428 5_4:-25971468 Msa0846230:exon
AAAGTCCCAAAATGAAGAAA+TGG 0.405533 5_4:-25974027 Msa0846230:CDS
TTTCATTTCACATTGGATGA+TGG 0.406497 5_4:+25971439 None:intergenic
TTCTTCCAACAAGAACTAAA+GGG 0.411466 5_4:+25976026 None:intergenic
TCAAGGCTCCTGTTGGTAGA+TGG 0.426647 5_4:-25975557 Msa0846230:CDS
AAACACAGAGAGAATTATAT+AGG 0.430798 5_4:-25975588 Msa0846230:CDS
GAGAAGACGGGAAGAAAGGA+AGG 0.440522 5_4:-25971619 Msa0846230:CDS
TTCATTTCACATTGGATGAT+GGG 0.441658 5_4:+25971440 None:intergenic
ATTGAATACTCACTCCTCTT+GGG 0.444034 5_4:-25971467 Msa0846230:exon
CCTTTCTGCCATCTACCAAC+AGG 0.451053 5_4:+25975549 None:intergenic
TCTCTTGCTTTCTTTCCTCA+CGG 0.454567 5_4:+25971571 None:intergenic
GGTTGCTCTATAGTCCCCTT+AGG 0.468027 5_4:-25971130 Msa0846230:three_prime_UTR
GCTGAAGCAGCAAGGGTTCA+AGG 0.474043 5_4:-25973828 Msa0846230:CDS
TGTGCAGAGAACTCCGCCCT+TGG 0.476704 5_4:-25971758 Msa0846230:intron
GTTCTTCCAACAAGAACTAA+AGG 0.477212 5_4:+25976025 None:intergenic
TAAGTGATAACGGTAAATAC+AGG 0.477229 5_4:+25971360 None:intergenic
GTTAGGCCTACCATGGTCCT+AGG 0.479312 5_4:-25971185 Msa0846230:three_prime_UTR
GCAGCAAGGGTTCAAGGTGT+TGG 0.487662 5_4:-25973822 Msa0846230:CDS
GGGTCTACAGCAGAAGACTT+AGG 0.489361 5_4:-25973861 Msa0846230:CDS
GTGCAGAGAACTCCGCCCTT+GGG 0.491260 5_4:-25971757 Msa0846230:intron
TGGTGTATGCAAGACCTTTG+AGG 0.493293 5_4:+25971722 None:intergenic
TTTCAGGGTTGAGCAACCTA+AGG 0.493942 5_4:+25971114 None:intergenic
AATTAAGGAAGAGGAGGAGC+AGG 0.497912 5_4:-25973979 Msa0846230:CDS
TATTATGTGGTGTTTCAAGT+TGG 0.499677 5_4:-25971308 Msa0846230:three_prime_UTR
ATCGGAATGAATCTTCTGAT+AGG 0.500284 5_4:-25971052 Msa0846230:three_prime_UTR
TCCTAGGGACATTGCAGACA+TGG 0.501105 5_4:-25971169 Msa0846230:three_prime_UTR
AGAGGAGGAGCAGGCAATGA+GGG 0.501735 5_4:-25973970 Msa0846230:CDS
AAAATTCATGTTTATCAAGA+CGG 0.507020 5_4:+25973901 None:intergenic
AGCAAGAGAAGCGTGAGAAA+CGG 0.508367 5_4:-25971557 Msa0846230:CDS
TGAGGACGACTAGCACGCTT+AGG 0.512346 5_4:+25973930 None:intergenic
TTTGATGGACAGAATTCACT+TGG 0.523959 5_4:-25975629 Msa0846230:intron
AGATACTCTCCGATAAATTG+AGG 0.525366 5_4:-25971016 Msa0846230:three_prime_UTR
CCAACTCGAGGTGGCGTCCG+TGG 0.525837 5_4:-25975931 Msa0846230:CDS
CCCATGTCTGCAATGTCCCT+AGG 0.526245 5_4:+25971168 None:intergenic
TGCAAGACCTTTGAGGAACC+AGG 0.527049 5_4:+25971729 None:intergenic
AGAAAGATAAAGAGAGGAGG+AGG 0.528808 5_4:-25971500 Msa0846230:CDS
ATCAAGATACTTCATGAGCT+TGG 0.529950 5_4:+25971265 None:intergenic
CTTCTGATAGGTTTGTGCAT+TGG 0.534592 5_4:-25971040 Msa0846230:three_prime_UTR
TTCAGGGTTGAGCAACCTAA+GGG 0.542091 5_4:+25971115 None:intergenic
CTCCGCCCTTGGGAAGAACC+TGG 0.543845 5_4:-25971747 Msa0846230:CDS
GAGGAACCAGGTTCTTCCCA+AGG 0.547002 5_4:+25971741 None:intergenic
AATATCCAGATAAGTGATAA+CGG 0.548202 5_4:+25971350 None:intergenic
AATGTCATTTCATTTCACAT+TGG 0.553869 5_4:+25971432 None:intergenic
AATAAGAAGATAGCTTCTGA+TGG 0.554691 5_4:-25971084 Msa0846230:three_prime_UTR
ATCAGAAGATTCATTCCGAT+CGG 0.563793 5_4:+25971055 None:intergenic
AAAGATTGAAGATGAATCTG+AGG 0.564195 5_4:-25971658 Msa0846230:CDS
AATGAGGGAAGCTCTCGGCT+TGG 0.564929 5_4:-25973955 Msa0846230:CDS
GATACTCTCCGATAAATTGA+GGG 0.565569 5_4:-25971015 Msa0846230:three_prime_UTR
CTGCAATGTCCCTAGGACCA+TGG 0.571604 5_4:+25971175 None:intergenic
GACACAAGAAAGATAAAGAG+AGG 0.577049 5_4:-25971506 Msa0846230:CDS
GGTCCCTCATGTTTGCTCAA+AGG 0.578356 5_4:+25970991 None:intergenic
AAGAGGAGGAGCAGGCAATG+AGG 0.579166 5_4:-25973971 Msa0846230:CDS
CCACGGACGCCACCTCGAGT+TGG 0.580213 5_4:+25975931 None:intergenic
ATTCTCGTGATTCAGATGAC+AGG 0.582090 5_4:-25971533 Msa0846230:CDS
TTTCAGAACTAGTAAAGAGA+GGG 0.582339 5_4:-25973881 Msa0846230:CDS
GGAAGAACCTGGTTCCTCAA+AGG 0.584885 5_4:-25971736 Msa0846230:CDS
TTAGGCCTACCATGGTCCTA+GGG 0.585638 5_4:-25971184 Msa0846230:three_prime_UTR
AGGAACCAGGTTCTTCCCAA+GGG 0.588462 5_4:+25971742 None:intergenic
CCTGTTGGTAGATGGCAGAA+AGG 0.593241 5_4:-25975549 Msa0846230:intron
GTCCCAAAATGAAGAAATGG+AGG 0.596320 5_4:-25974024 Msa0846230:CDS
AAGGTCACGCTGAAGCAGCA+AGG 0.608440 5_4:-25973836 Msa0846230:CDS
CATAGTCTCAAGGCTCCTGT+TGG 0.611584 5_4:-25975564 Msa0846230:CDS
TTATATAGGTCATAGTCTCA+AGG 0.617267 5_4:-25975574 Msa0846230:CDS
ATTTATAGTTAGGCCTACCA+TGG 0.617982 5_4:-25971192 Msa0846230:three_prime_UTR
ACTCGAGGTGGCGTCCGTGG+CGG 0.620619 5_4:-25975928 Msa0846230:CDS
GGGGCCTTTGAGCAAACATG+AGG 0.623230 5_4:-25970995 Msa0846230:three_prime_UTR
AGGTCACGCTGAAGCAGCAA+GGG 0.623464 5_4:-25973835 Msa0846230:CDS
TCTTCCAACAAGAACTAAAG+GGG 0.624644 5_4:+25976027 None:intergenic
CCTAGGGACATTGCAGACAT+GGG 0.625805 5_4:-25971168 Msa0846230:three_prime_UTR
AAGCGTGCTAGTCGTCCTCA+AGG 0.629339 5_4:-25973927 Msa0846230:CDS
CAGGCAATGAGGGAAGCTCT+CGG 0.634387 5_4:-25973960 Msa0846230:CDS
TTGATGGACAGAATTCACTT+GGG 0.635778 5_4:-25975628 Msa0846230:intron
AACCAGGTTCTTCCCAAGGG+CGG 0.636510 5_4:+25971745 None:intergenic
TTATCAAGACGGTTACCTTG+AGG 0.642277 5_4:+25973912 None:intergenic
GGTCTTGCATACACCAGCTG+AGG 0.643578 5_4:-25971715 Msa0846230:CDS
ACAGCAGAAGACTTAGGTGA+AGG 0.653024 5_4:-25973855 Msa0846230:CDS
AATGTCCCTAGGACCATGGT+AGG 0.660566 5_4:+25971179 None:intergenic
AGGAAGAGAAACGTGAAAAG+CGG 0.661820 5_4:-25971599 Msa0846230:CDS
ACAAGAAAGATAAAGAGAGG+AGG 0.663634 5_4:-25971503 Msa0846230:CDS
GGGCCTTTGAGCAAACATGA+GGG 0.669264 5_4:-25970994 Msa0846230:three_prime_UTR
ACTTACGATCTCGACCGCCA+CGG 0.670052 5_4:+25975914 None:intergenic
ATGTATCATCCAACTCGAGG+TGG 0.688754 5_4:-25975940 Msa0846230:CDS
ATACTCTCCGATAAATTGAG+GGG 0.694021 5_4:-25971014 Msa0846230:three_prime_UTR
AACATGTATCATCCAACTCG+AGG 0.703661 5_4:-25975943 Msa0846230:CDS
TCAGGGTTGAGCAACCTAAG+GGG 0.704922 5_4:+25971116 None:intergenic
TGAAAAGCGGCATTCCCGTG+AGG 0.706921 5_4:-25971586 Msa0846230:CDS
GGATGATGGGAAAACCCAAG+AGG 0.730485 5_4:+25971453 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTAAATAATTTGATTTT+CGG + chr5_4:25971002-25971021 None:intergenic 10.0%
!! AACATTAACAAAATAAATAA+AGG + chr5_4:25971329-25971348 None:intergenic 10.0%
!!! TAAGAAAATTTAATTTTAAG+AGG + chr5_4:25973667-25973686 None:intergenic 10.0%
!!! ATTTATTTCCTTATTTAATT+AGG - chr5_4:25973710-25973729 Msa0846230:intron 10.0%
!! AATTTGTGAAATTTGAAAAA+GGG + chr5_4:25971143-25971162 None:intergenic 15.0%
!! TGAATTAAAAGGTTTAAATT+TGG + chr5_4:25972457-25972476 None:intergenic 15.0%
!! ATAAAAAGACAATTTAAAGA+TGG + chr5_4:25972905-25972924 None:intergenic 15.0%
!! AAAAATAAAACAAATGAAAC+AGG + chr5_4:25973279-25973298 None:intergenic 15.0%
!!! GTTTCATTTGTTTTATTTTT+AGG - chr5_4:25973279-25973298 Msa0846230:intron 15.0%
!! AGGATATCATATAAATTATT+TGG - chr5_4:25973299-25973318 Msa0846230:intron 15.0%
!!! TTATATTTAGGTTTTTTTCA+TGG - chr5_4:25973393-25973412 Msa0846230:intron 15.0%
!!! GTTTTGTATTGATATAAATA+AGG - chr5_4:25973740-25973759 Msa0846230:intron 15.0%
!!! TTATATTTAGATTTTTCTCA+TGG - chr5_4:25973955-25973974 Msa0846230:CDS 15.0%
!!! ATAAATCTTTTAAAAGAATC+AGG + chr5_4:25973986-25974005 None:intergenic 15.0%
!!! TTTTTCAGAAACAAAATTTT+AGG - chr5_4:25974384-25974403 Msa0846230:intron 15.0%
!! TTTAAAAAAAAAGCTGATTA+GGG + chr5_4:25974422-25974441 None:intergenic 15.0%
!!! AAAACTGTTATTTCTATTAA+AGG + chr5_4:25974534-25974553 None:intergenic 15.0%
!! CAATTATTTAATATAGAAGT+TGG - chr5_4:25974939-25974958 Msa0846230:intron 15.0%
!!! TAATTTTGTTCAAAAGATTT+TGG + chr5_4:25976038-25976057 None:intergenic 15.0%
!!! AGTTTTTTTTCAAGTTGAAA+GGG + chr5_4:25970934-25970953 None:intergenic 20.0%
!!! TAGTTTTTTTTCAAGTTGAA+AGG + chr5_4:25970935-25970954 None:intergenic 20.0%
!! GAATTTGTGAAATTTGAAAA+AGG + chr5_4:25971144-25971163 None:intergenic 20.0%
!! ACTATACATAAGAATTAAGA+TGG + chr5_4:25971178-25971197 None:intergenic 20.0%
!!! TATAAGCATAAGTTATTTTG+TGG + chr5_4:25971248-25971267 None:intergenic 20.0%
!! ATAAGGTAAGGTAAAATAAA+AGG + chr5_4:25971478-25971497 None:intergenic 20.0%
!! CATCAGTTTCTTAAAATTAT+AGG - chr5_4:25971778-25971797 Msa0846230:intron 20.0%
!! TCTTCAAATTAAGGTTAATT+GGG + chr5_4:25971874-25971893 None:intergenic 20.0%
!!! AAAACAACTTTTTAGATTCA+TGG - chr5_4:25971994-25972013 Msa0846230:intron 20.0%
!! TTCATGGAAATTATTGTATT+TGG - chr5_4:25972010-25972029 Msa0846230:intron 20.0%
!! CATTGAATAACTAATGTATT+TGG + chr5_4:25972049-25972068 None:intergenic 20.0%
!! TAAATAGCATAAGGAAATTT+CGG + chr5_4:25972199-25972218 None:intergenic 20.0%
!!! TATTGTTTATAGTCTTGTAT+AGG - chr5_4:25972249-25972268 Msa0846230:intron 20.0%
!! AGTAAATTGGTTGTTTAAAT+AGG - chr5_4:25972354-25972373 Msa0846230:intron 20.0%
!! GATATTAGATTTCAATTTGA+TGG - chr5_4:25972376-25972395 Msa0846230:intron 20.0%
!! TATCTAAACTTACATTACAT+TGG + chr5_4:25972704-25972723 None:intergenic 20.0%
!! TAAAATTTAAGAAGCTAGAA+AGG - chr5_4:25972742-25972761 Msa0846230:intron 20.0%
!!! AAATTGTCTTTTTATTCAAC+AGG - chr5_4:25972910-25972929 Msa0846230:intron 20.0%
!!! AATTGTCTTTTTATTCAACA+GGG - chr5_4:25972911-25972930 Msa0846230:intron 20.0%
!! AGAAGAGATAAAAAGAATTA+AGG - chr5_4:25972996-25973015 Msa0846230:intron 20.0%
!! AAAATTCATGTTTATCAAGA+CGG + chr5_4:25973092-25973111 None:intergenic 20.0%
!!! AATAAAGCTCTAAAAATCAT+TGG + chr5_4:25973432-25973451 None:intergenic 20.0%
!!! TTCTTATTTCTTTGTTATGA+TGG - chr5_4:25973681-25973700 Msa0846230:intron 20.0%
!! CTCTAAATCCTAATTAAATA+AGG + chr5_4:25973721-25973740 None:intergenic 20.0%
!!! GAGTTCTAAAATTGTAAATA+TGG + chr5_4:25973818-25973837 None:intergenic 20.0%
!! CAAATCATAAATAAACAAAG+TGG + chr5_4:25974333-25974352 None:intergenic 20.0%
!!! CACTTTGTTTATTTATGATT+TGG - chr5_4:25974331-25974350 Msa0846230:intron 20.0%
!!! CTTTAAAAAAAAAGCTGATT+AGG + chr5_4:25974423-25974442 None:intergenic 20.0%
!! TTCGCCATATAATAAATAAA+GGG + chr5_4:25974581-25974600 None:intergenic 20.0%
!! TTTCGCCATATAATAAATAA+AGG + chr5_4:25974582-25974601 None:intergenic 20.0%
!! AATAAGTTACAATAATAGCA+CGG + chr5_4:25975203-25975222 None:intergenic 20.0%
!! ATACAAAGAGAAGATAAAAA+CGG + chr5_4:25975780-25975799 None:intergenic 20.0%
!! TTCTCTTTGTATTTATAGTT+AGG - chr5_4:25975788-25975807 Msa0846230:intron 20.0%
!!! GTTTTTTTTCAAGTTGAAAG+GGG + chr5_4:25970933-25970952 None:intergenic 25.0%
! TTGGAAAATTGAAATTGAGA+TGG + chr5_4:25971106-25971125 None:intergenic 25.0%
! AATTAAGATGGAATTGAAGA+AGG + chr5_4:25971166-25971185 None:intergenic 25.0%
!!! TAAGTTATTTTGTGGAAATC+AGG + chr5_4:25971240-25971259 None:intergenic 25.0%
! AAACACAGAGAGAATTATAT+AGG - chr5_4:25971402-25971421 Msa0846230:three_prime_UTR 25.0%
! TGAATTAAAGGAATAAGGTA+AGG + chr5_4:25971490-25971509 None:intergenic 25.0%
! ACGTATGAATTAAAGGAATA+AGG + chr5_4:25971495-25971514 None:intergenic 25.0%
!!! CTATAGAAGACTTGTTTTAT+TGG - chr5_4:25971640-25971659 Msa0846230:CDS 25.0%
! ATAGCTATTTGATTGACAAT+AGG - chr5_4:25971684-25971703 Msa0846230:CDS 25.0%
! TTCTTAAAATTATAGGCTCT+TGG - chr5_4:25971785-25971804 Msa0846230:intron 25.0%
! TCTTAAAATTATAGGCTCTT+GGG - chr5_4:25971786-25971805 Msa0846230:intron 25.0%
! CTTCAAATTAAGGTTAATTG+GGG + chr5_4:25971873-25971892 None:intergenic 25.0%
! GTCTTCAAATTAAGGTTAAT+TGG + chr5_4:25971875-25971894 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr5_4:25971977-25971996 None:intergenic 25.0%
! GAAGAAAAGTAAATAGCATA+AGG + chr5_4:25972208-25972227 None:intergenic 25.0%
!!! CTATTTACTTTTCTTCAACA+TGG - chr5_4:25972212-25972231 Msa0846230:intron 25.0%
! ATTCAATCAAAACTGTTGAT+CGG - chr5_4:25972318-25972337 Msa0846230:intron 25.0%
!!! CTTTTAATTCAAAGCTCATA+GGG - chr5_4:25972466-25972485 Msa0846230:intron 25.0%
!!! TTTTAATTCAAAGCTCATAG+GGG - chr5_4:25972467-25972486 Msa0846230:intron 25.0%
!!! TTTTCGTCATTTTGGTTTTA+TGG - chr5_4:25972566-25972585 Msa0846230:intron 25.0%
!!! TCATTTTGGTTTTATGGTTT+AGG - chr5_4:25972572-25972591 Msa0846230:intron 25.0%
! TAAACTTACATTACATTGGA+TGG + chr5_4:25972700-25972719 None:intergenic 25.0%
! ATAAACATTAGACTGTTGTT+TGG - chr5_4:25972857-25972876 Msa0846230:intron 25.0%
! GATAAAAAGAATTAAGGAAG+AGG - chr5_4:25973002-25973021 Msa0846230:intron 25.0%
! GAGTCTGATGTATTATATTT+AGG - chr5_4:25973381-25973400 Msa0846230:intron 25.0%
!!! AGCAAATTCTTTTAGCTTAT+AGG - chr5_4:25973456-25973475 Msa0846230:intron 25.0%
!!! TGTTAGGTCTTTTATTTACT+GGG + chr5_4:25973496-25973515 None:intergenic 25.0%
! AAAATCTTGAATAAGCTGTT+AGG + chr5_4:25973512-25973531 None:intergenic 25.0%
! AATTGTAATCATGCAATTCT+TGG + chr5_4:25973550-25973569 None:intergenic 25.0%
! AGAGTAGATATCCAAAAAAT+GGG + chr5_4:25974216-25974235 None:intergenic 25.0%
! TAGAGTAGATATCCAAAAAA+TGG + chr5_4:25974217-25974236 None:intergenic 25.0%
! AGTAAAAGCTTAGAAATTAC+AGG + chr5_4:25974297-25974316 None:intergenic 25.0%
!! GAAATAACAGTTTTTGTAGA+AGG - chr5_4:25974540-25974559 Msa0846230:intron 25.0%
! ATATAACTTTCCTATACCTA+AGG + chr5_4:25974819-25974838 None:intergenic 25.0%
! TAACATATGAATGCTTAGTT+TGG - chr5_4:25974915-25974934 Msa0846230:intron 25.0%
! AAAGTAGAAAAAAGAGAAGA+CGG - chr5_4:25975358-25975377 Msa0846230:intron 25.0%
!! AATGTCATTTCATTTCACAT+TGG + chr5_4:25975561-25975580 None:intergenic 25.0%
!!! CTAGTTTCATGACTTATTTT+CGG - chr5_4:25975587-25975606 Msa0846230:CDS 25.0%
! AATATCCAGATAAGTGATAA+CGG + chr5_4:25975643-25975662 None:intergenic 25.0%
!!! TTCTTATTGACCTTTTTTCA+GGG + chr5_4:25975894-25975913 None:intergenic 25.0%
!!! GATTTTGGAAATTGCAATAT+AGG + chr5_4:25976023-25976042 None:intergenic 25.0%
TTCTTCCAACAAGAACTAAA+GGG + chr5_4:25970967-25970986 None:intergenic 30.0%
GTGAAATTTGAAAAAGGGAA+AGG + chr5_4:25971138-25971157 None:intergenic 30.0%
TTATATAGGTCATAGTCTCA+AGG - chr5_4:25971416-25971435 Msa0846230:three_prime_UTR 30.0%
TGAATTGTGATGTCAAATAG+CGG - chr5_4:25971531-25971550 Msa0846230:CDS 30.0%
TAGTCACATCATATAGTCTT+CGG + chr5_4:25971745-25971764 None:intergenic 30.0%
CTTAAAATTATAGGCTCTTG+GGG - chr5_4:25971787-25971806 Msa0846230:intron 30.0%
! GATCTAAGGTCTTCAAATTA+AGG + chr5_4:25971883-25971902 None:intergenic 30.0%
ATGTATTTGGTCTACAAATG+TGG + chr5_4:25972036-25972055 None:intergenic 30.0%
CCAAACATATACAATGCAAA+AGG + chr5_4:25972133-25972152 None:intergenic 30.0%
! CCTTTTGCATTGTATATGTT+TGG - chr5_4:25972130-25972149 Msa0846230:intron 30.0%
TCAGTCTTTGCTTAGTAAAT+TGG - chr5_4:25972341-25972360 Msa0846230:intron 30.0%
! AAGATCTGAAGTTTCTTCTA+TGG - chr5_4:25972406-25972425 Msa0846230:intron 30.0%
!! TTAAATTTGGCTCTAGACTT+GGG + chr5_4:25972444-25972463 None:intergenic 30.0%
!! TTTAAATTTGGCTCTAGACT+TGG + chr5_4:25972445-25972464 None:intergenic 30.0%
!! CCTATGAGCTTTGAATTAAA+AGG + chr5_4:25972468-25972487 None:intergenic 30.0%
!! CCTTTTAATTCAAAGCTCAT+AGG - chr5_4:25972465-25972484 Msa0846230:intron 30.0%
!!! CAGCTTTATTTTCGTCATTT+TGG - chr5_4:25972558-25972577 Msa0846230:intron 30.0%
!!! TGGTTTTATGGTTTAGGTTA+TGG - chr5_4:25972578-25972597 Msa0846230:intron 30.0%
TGGCTATTCACATCTAAATA+AGG - chr5_4:25972877-25972896 Msa0846230:intron 30.0%
GGCTATTCACATCTAAATAA+GGG - chr5_4:25972878-25972897 Msa0846230:intron 30.0%
AAAGTCCCAAAATGAAGAAA+TGG - chr5_4:25972963-25972982 Msa0846230:intron 30.0%
AAAAAGAATTAAGGAAGAGG+AGG - chr5_4:25973005-25973024 Msa0846230:intron 30.0%
! TTTTCAGAACTAGTAAAGAG+AGG - chr5_4:25973108-25973127 Msa0846230:intron 30.0%
TTTCAGAACTAGTAAAGAGA+GGG - chr5_4:25973109-25973128 Msa0846230:intron 30.0%
!! CTGTTAGGTCTTTTATTTAC+TGG + chr5_4:25973497-25973516 None:intergenic 30.0%
ACTTATTTGTGCATCTTTGA+AGG + chr5_4:25973601-25973620 None:intergenic 30.0%
AAACACACTGTTGAAGTTTA+GGG + chr5_4:25973874-25973893 None:intergenic 30.0%
! CTGGCCCTTTATTTATTATA+TGG - chr5_4:25974574-25974593 Msa0846230:intron 30.0%
AGTCTTCCAAATAATAGATG+TGG + chr5_4:25974618-25974637 None:intergenic 30.0%
ACATCTATTATTTGGAAGAC+TGG - chr5_4:25974617-25974636 Msa0846230:intron 30.0%
GGTATAAAGATGGAAAAGAA+AGG + chr5_4:25974697-25974716 None:intergenic 30.0%
! ACATTAGCTTGGTATAAAGA+TGG + chr5_4:25974707-25974726 None:intergenic 30.0%
! ATATCCCTTATTTGTTAAGC+TGG - chr5_4:25974852-25974871 Msa0846230:intron 30.0%
TAGACCAGCTTAACAAATAA+GGG + chr5_4:25974859-25974878 None:intergenic 30.0%
TTAGACCAGCTTAACAAATA+AGG + chr5_4:25974860-25974879 None:intergenic 30.0%
! AGTTTGTGTCATTCTAACTT+TGG - chr5_4:25974982-25975001 Msa0846230:intron 30.0%
!!! GCAGTTGCATTTTGAAATAA+TGG - chr5_4:25975004-25975023 Msa0846230:intron 30.0%
! TAGTTTAACTTCGTAAGCAA+AGG + chr5_4:25975146-25975165 None:intergenic 30.0%
! ATCTTTCTTGGTGATTGATT+AGG + chr5_4:25975318-25975337 None:intergenic 30.0%
GATTCATCTTCAATCTTTCT+TGG + chr5_4:25975330-25975349 None:intergenic 30.0%
AAAGATTGAAGATGAATCTG+AGG - chr5_4:25975332-25975351 Msa0846230:intron 30.0%
AAGTAGAAAAAAGAGAAGAC+GGG - chr5_4:25975359-25975378 Msa0846230:intron 30.0%
TTCATTTCACATTGGATGAT+GGG + chr5_4:25975553-25975572 None:intergenic 30.0%
TTTCATTTCACATTGGATGA+TGG + chr5_4:25975554-25975573 None:intergenic 30.0%
!! TAAGTGATAACGGTAAATAC+AGG + chr5_4:25975633-25975652 None:intergenic 30.0%
ATTTACCGTTATCACTTATC+TGG - chr5_4:25975635-25975654 Msa0846230:intron 30.0%
GTTATCACTTATCTGGATAT+TGG - chr5_4:25975642-25975661 Msa0846230:intron 30.0%
ACCACATAATAATGCCAAAA+TGG + chr5_4:25975673-25975692 None:intergenic 30.0%
! TATTATGTGGTGTTTCAAGT+TGG - chr5_4:25975682-25975701 Msa0846230:intron 30.0%
!!! CTTCTTATTGACCTTTTTTC+AGG + chr5_4:25975895-25975914 None:intergenic 30.0%
AATAAGAAGATAGCTTCTGA+TGG - chr5_4:25975906-25975925 Msa0846230:intron 30.0%
TCTTCCAACAAGAACTAAAG+GGG + chr5_4:25970966-25970985 None:intergenic 35.0%
GTTCTTCCAACAAGAACTAA+AGG + chr5_4:25970968-25970987 None:intergenic 35.0%
AAGGGAAAGGATTGAATAGT+TGG + chr5_4:25971125-25971144 None:intergenic 35.0%
!! GTTGTGTTTCTCACTTTTGA+TGG - chr5_4:25971346-25971365 Msa0846230:three_prime_UTR 35.0%
! TTTGATGGACAGAATTCACT+TGG - chr5_4:25971361-25971380 Msa0846230:three_prime_UTR 35.0%
! TTGATGGACAGAATTCACTT+GGG - chr5_4:25971362-25971381 Msa0846230:three_prime_UTR 35.0%
! CAATTCACAAGTATTTTCCG+CGG + chr5_4:25971518-25971537 None:intergenic 35.0%
GAAGACTATATGATGTGACT+AGG - chr5_4:25971744-25971763 Msa0846230:CDS 35.0%
TATGATGTGACTAGGACATT+AGG - chr5_4:25971752-25971771 Msa0846230:CDS 35.0%
ATGATGTGACTAGGACATTA+GGG - chr5_4:25971753-25971772 Msa0846230:CDS 35.0%
CTTGTTAGCAATATCGTTTG+CGG - chr5_4:25971812-25971831 Msa0846230:intron 35.0%
TTGCTTATAAATGTGACCAG+AGG - chr5_4:25972086-25972105 Msa0846230:intron 35.0%
TGCTTATAAATGTGACCAGA+GGG - chr5_4:25972087-25972106 Msa0846230:intron 35.0%
TTGAATCACACACATAGAAC+AGG + chr5_4:25972304-25972323 None:intergenic 35.0%
TTAAGGAGAAACTTAGGTGA+TGG + chr5_4:25972502-25972521 None:intergenic 35.0%
TTTATAAGCAACCTAGGAGA+AGG + chr5_4:25972817-25972836 None:intergenic 35.0%
TTCTCCTAGGTTGCTTATAA+AGG - chr5_4:25972816-25972835 Msa0846230:intron 35.0%
TCTCCTAGGTTGCTTATAAA+GGG - chr5_4:25972817-25972836 Msa0846230:intron 35.0%
!!! AAGACCTTTTTTGGTATACC+CGG - chr5_4:25972935-25972954 Msa0846230:intron 35.0%
!!! ATTTTGGGACTTTTTATCCC+GGG + chr5_4:25972956-25972975 None:intergenic 35.0%
!!! CATTTTGGGACTTTTTATCC+CGG + chr5_4:25972957-25972976 None:intergenic 35.0%
! AGCCTCCATTTCTTCATTTT+GGG + chr5_4:25972971-25972990 None:intergenic 35.0%
TTATTTGGATGAAGAACAGC+TGG - chr5_4:25973314-25973333 Msa0846230:intron 35.0%
TATTTGGATGAAGAACAGCT+GGG - chr5_4:25973315-25973334 Msa0846230:intron 35.0%
!! CTTTTATTTACTGGGCTGTT+AGG + chr5_4:25973488-25973507 None:intergenic 35.0%
! TTTGTGCATCTTTGAAGGAA+AGG + chr5_4:25973596-25973615 None:intergenic 35.0%
CAAACACACTGTTGAAGTTT+AGG + chr5_4:25973875-25973894 None:intergenic 35.0%
GCTTCAACAAATCTGAACTT+TGG + chr5_4:25974068-25974087 None:intergenic 35.0%
!! AGATTTGTTGAAGCATGAGA+TGG - chr5_4:25974074-25974093 Msa0846230:intron 35.0%
! AAGATACCCATTTTCAGTCA+AGG - chr5_4:25974127-25974146 Msa0846230:intron 35.0%
! AGATACCCATTTTCAGTCAA+GGG - chr5_4:25974128-25974147 Msa0846230:intron 35.0%
TCCACTCCACATCTATTATT+TGG - chr5_4:25974609-25974628 Msa0846230:intron 35.0%
TCCAAATAATAGATGTGGAG+TGG + chr5_4:25974613-25974632 None:intergenic 35.0%
CACTAACATAGACATTAGCT+TGG + chr5_4:25974718-25974737 None:intergenic 35.0%
! GTCTATGTTAGTGTTACTAG+TGG - chr5_4:25974725-25974744 Msa0846230:intron 35.0%
! AGTGTTACTAGTGGTTTCAA+TGG - chr5_4:25974734-25974753 Msa0846230:intron 35.0%
TTACTAGTGGTTTCAATGGA+GGG - chr5_4:25974738-25974757 Msa0846230:intron 35.0%
TAACATTGTGAAATCACCCT+AGG - chr5_4:25974792-25974811 Msa0846230:intron 35.0%
AACATTGTGAAATCACCCTA+GGG - chr5_4:25974793-25974812 Msa0846230:intron 35.0%
AACACCGAAACTACTTAACA+TGG - chr5_4:25974878-25974897 Msa0846230:intron 35.0%
ACACCGAAACTACTTAACAT+GGG - chr5_4:25974879-25974898 Msa0846230:intron 35.0%
CAACCCATGTTAAGTAGTTT+CGG + chr5_4:25974885-25974904 None:intergenic 35.0%
ATGACACAAACTTGAAGAGT+GGG + chr5_4:25974974-25974993 None:intergenic 35.0%
AATGACACAAACTTGAAGAG+TGG + chr5_4:25974975-25974994 None:intergenic 35.0%
TGGAAAACAAACACAAGAGA+TGG + chr5_4:25975174-25975193 None:intergenic 35.0%
CAATAATAGCACGGAATTTC+TGG + chr5_4:25975194-25975213 None:intergenic 35.0%
GACACAAGAAAGATAAAGAG+AGG - chr5_4:25975484-25975503 Msa0846230:intron 35.0%
ACAAGAAAGATAAAGAGAGG+AGG - chr5_4:25975487-25975506 Msa0846230:intron 35.0%
ATTGAATACTCACTCCTCTT+GGG - chr5_4:25975523-25975542 Msa0846230:intron 35.0%
!! GCCATTTTGGCATTATTATG+TGG - chr5_4:25975669-25975688 Msa0846230:intron 35.0%
ATCAAGATACTTCATGAGCT+TGG + chr5_4:25975728-25975747 None:intergenic 35.0%
ATTTATAGTTAGGCCTACCA+TGG - chr5_4:25975798-25975817 Msa0846230:intron 35.0%
ATCAGAAGATTCATTCCGAT+CGG + chr5_4:25975938-25975957 None:intergenic 35.0%
ATCGGAATGAATCTTCTGAT+AGG - chr5_4:25975938-25975957 Msa0846230:CDS 35.0%
AGATACTCTCCGATAAATTG+AGG - chr5_4:25975974-25975993 Msa0846230:five_prime_UTR 35.0%
GATACTCTCCGATAAATTGA+GGG - chr5_4:25975975-25975994 Msa0846230:five_prime_UTR 35.0%
ATACTCTCCGATAAATTGAG+GGG - chr5_4:25975976-25975995 Msa0846230:five_prime_UTR 35.0%
!! CATTTTGAGTCTGACTACAT+AGG - chr5_4:25976063-25976082 Msa0846230:five_prime_UTR 35.0%
! CGAGTTGGATGATACATGTT+TGG + chr5_4:25971047-25971066 None:intergenic 40.0%
AACATGTATCATCCAACTCG+AGG - chr5_4:25971047-25971066 Msa0846230:three_prime_UTR 40.0%
TTGTGGAAATCAGGCTTATG+TGG + chr5_4:25971231-25971250 None:intergenic 40.0%
TCCTTTAATTCATACGTCCG+CGG - chr5_4:25971498-25971517 Msa0846230:CDS 40.0%
GTTAAAATTCTGCTGCACGA+TGG + chr5_4:25971565-25971584 None:intergenic 40.0%
! CACTTGAAGAGTGTGATCTA+AGG + chr5_4:25971897-25971916 None:intergenic 40.0%
CTTAGATCACACTCTTCAAG+TGG - chr5_4:25971895-25971914 Msa0846230:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr5_4:25971973-25971992 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr5_4:25971974-25971993 None:intergenic 40.0%
TAGGATAAAGTGCAGGCTTA+AGG + chr5_4:25972519-25972538 None:intergenic 40.0%
TACAAATGTAGCCTGAGGAT+AGG + chr5_4:25972538-25972557 None:intergenic 40.0%
! AAGCACTGCATATGCTATGT+TGG - chr5_4:25972636-25972655 Msa0846230:intron 40.0%
ACTGCATATGCTATGTTGGT+TGG - chr5_4:25972640-25972659 Msa0846230:intron 40.0%
AGAAGCTAGAAAGGTTGAAG+AGG - chr5_4:25972751-25972770 Msa0846230:intron 40.0%
GAAGCTAGAAAGGTTGAAGA+GGG - chr5_4:25972752-25972771 Msa0846230:intron 40.0%
CTACCCTTTATAAGCAACCT+AGG + chr5_4:25972823-25972842 None:intergenic 40.0%
AGGTTGCTTATAAAGGGTAG+AGG - chr5_4:25972823-25972842 Msa0846230:intron 40.0%
GGTTGCTTATAAAGGGTAGA+GGG - chr5_4:25972824-25972843 Msa0846230:intron 40.0%
!!! CAACAGGGAAAGACCTTTTT+TGG - chr5_4:25972926-25972945 Msa0846230:intron 40.0%
!!! AGACCTTTTTTGGTATACCC+GGG - chr5_4:25972936-25972955 Msa0846230:intron 40.0%
TATCCCGGGTATACCAAAAA+AGG + chr5_4:25972942-25972961 None:intergenic 40.0%
GTCCCAAAATGAAGAAATGG+AGG - chr5_4:25972966-25972985 Msa0846230:intron 40.0%
! CAGCCTCCATTTCTTCATTT+TGG + chr5_4:25972972-25972991 None:intergenic 40.0%
TTATCAAGACGGTTACCTTG+AGG + chr5_4:25973081-25973100 None:intergenic 40.0%
!!! TTCAAGGTGTTGGTTTTGCA+AGG - chr5_4:25973178-25973197 Msa0846230:intron 40.0%
! GTTTAGGGTGTTAGATAGAG+AGG + chr5_4:25973859-25973878 None:intergenic 40.0%
TTCAACAGTGTGTTTGCTTC+TGG - chr5_4:25973879-25973898 Msa0846230:CDS 40.0%
GTTTGCTTCTGGTCACATTT+AGG - chr5_4:25973890-25973909 Msa0846230:CDS 40.0%
AAGCATGAGATGGTAGTAAG+TGG - chr5_4:25974084-25974103 Msa0846230:intron 40.0%
AGCATGAGATGGTAGTAAGT+GGG - chr5_4:25974085-25974104 Msa0846230:intron 40.0%
TGGTACCCTTGACTGAAAAT+GGG + chr5_4:25974136-25974155 None:intergenic 40.0%
CCAAAAAATGGGTCTGAACA+TGG + chr5_4:25974205-25974224 None:intergenic 40.0%
!!! CCATGTTCAGACCCATTTTT+TGG - chr5_4:25974202-25974221 Msa0846230:intron 40.0%
GTTACTAGTGGTTTCAATGG+AGG - chr5_4:25974737-25974756 Msa0846230:intron 40.0%
TACTAGTGGTTTCAATGGAG+GGG - chr5_4:25974739-25974758 Msa0846230:intron 40.0%
!! CTACTTAACATGGGTTGATG+TGG - chr5_4:25974888-25974907 Msa0846230:intron 40.0%
! GATACATTTTCTACCTCAGC+TGG + chr5_4:25975291-25975310 None:intergenic 40.0%
AAAAGAGAAGACGGGAAGAA+AGG - chr5_4:25975367-25975386 Msa0846230:intron 40.0%
AGGAAGAGAAACGTGAAAAG+CGG - chr5_4:25975391-25975410 Msa0846230:intron 40.0%
TCTCTTGCTTTCTTTCCTCA+CGG + chr5_4:25975422-25975441 None:intergenic 40.0%
ATTCTCGTGATTCAGATGAC+AGG - chr5_4:25975457-25975476 Msa0846230:intron 40.0%
AGAAAGATAAAGAGAGGAGG+AGG - chr5_4:25975490-25975509 Msa0846230:intron 40.0%
GATTGAATACTCACTCCTCT+TGG - chr5_4:25975522-25975541 Msa0846230:intron 40.0%
TAACGGTAAATACAGGCTTC+TGG + chr5_4:25975626-25975645 None:intergenic 40.0%
CAGACATGGGCAAAAATTCT+TGG - chr5_4:25975835-25975854 Msa0846230:intron 40.0%
CATGGGCAAAAATTCTTGGA+AGG - chr5_4:25975839-25975858 Msa0846230:intron 40.0%
TTCTGATGGAAAAAGCCGAT+CGG - chr5_4:25975920-25975939 Msa0846230:CDS 40.0%
CTTCTGATAGGTTTGTGCAT+TGG - chr5_4:25975950-25975969 Msa0846230:exon 40.0%
TCAAAGGCCCCTCAATTTAT+CGG + chr5_4:25975986-25976005 None:intergenic 40.0%
!! CGAACCCCTTTAGTTCTTGT+TGG - chr5_4:25970959-25970978 Msa0846230:three_prime_UTR 45.0%
ATGTATCATCCAACTCGAGG+TGG - chr5_4:25971050-25971069 Msa0846230:three_prime_UTR 45.0%
TCCGCGGACGTATGAATTAA+AGG + chr5_4:25971502-25971521 None:intergenic 45.0%
! TTAATTGGGGTTAGTGCAGC+AGG + chr5_4:25971860-25971879 None:intergenic 45.0%
TTCTTGAAGTGTACTCCCTC+CGG - chr5_4:25971955-25971974 Msa0846230:intron 45.0%
AGCTTGCATAATACTCCCTC+TGG + chr5_4:25972105-25972124 None:intergenic 45.0%
!! GGGAGTATTATGCAAGCTGA+AGG - chr5_4:25972107-25972126 Msa0846230:intron 45.0%
GCAGGCTTAAGGAGAAACTT+AGG + chr5_4:25972508-25972527 None:intergenic 45.0%
CTGAGGATAGGATAAAGTGC+AGG + chr5_4:25972526-25972545 None:intergenic 45.0%
CTGCACTTTATCCTATCCTC+AGG - chr5_4:25972524-25972543 Msa0846230:intron 45.0%
AGCTGTACAAATGTAGCCTG+AGG + chr5_4:25972543-25972562 None:intergenic 45.0%
AATTAAGGAAGAGGAGGAGC+AGG - chr5_4:25973011-25973030 Msa0846230:intron 45.0%
ACAGCAGAAGACTTAGGTGA+AGG - chr5_4:25973135-25973154 Msa0846230:intron 45.0%
GCATGAGATGGTAGTAAGTG+GGG - chr5_4:25974086-25974105 Msa0846230:intron 45.0%
GTGGTACCCTTGACTGAAAA+TGG + chr5_4:25974137-25974156 None:intergenic 45.0%
AGTTACCCGAACACTTTGGT+GGG + chr5_4:25974176-25974195 None:intergenic 45.0%
TAGTTACCCGAACACTTTGG+TGG + chr5_4:25974177-25974196 None:intergenic 45.0%
GTGTAGTTACCCGAACACTT+TGG + chr5_4:25974180-25974199 None:intergenic 45.0%
GTAGAAGGATCACAACAAGC+TGG - chr5_4:25974555-25974574 Msa0846230:intron 45.0%
TTCCTATACCTAAGGCCCTA+GGG + chr5_4:25974811-25974830 None:intergenic 45.0%
TTTCCTATACCTAAGGCCCT+AGG + chr5_4:25974812-25974831 None:intergenic 45.0%
TGGTGTATGCAAGACCTTTG+AGG + chr5_4:25975271-25975290 None:intergenic 45.0%
CTCTTGCTTTCTTTCCTCAC+GGG + chr5_4:25975421-25975440 None:intergenic 45.0%
! AGCAAGAGAAGCGTGAGAAA+CGG - chr5_4:25975433-25975452 Msa0846230:intron 45.0%
!! GGATATTGGCACTGCCATTT+TGG - chr5_4:25975656-25975675 Msa0846230:intron 45.0%
TTCAGGGTTGAGCAACCTAA+GGG + chr5_4:25975878-25975897 None:intergenic 45.0%
TTTCAGGGTTGAGCAACCTA+AGG + chr5_4:25975879-25975898 None:intergenic 45.0%
GGTTGCTCAACCCTGAAAAA+AGG - chr5_4:25975881-25975900 Msa0846230:intron 45.0%
CATAGTCTCAAGGCTCCTGT+TGG - chr5_4:25971426-25971445 Msa0846230:three_prime_UTR 50.0%
! TCAAGGCTCCTGTTGGTAGA+TGG - chr5_4:25971433-25971452 Msa0846230:three_prime_UTR 50.0%
CCTTTCTGCCATCTACCAAC+AGG + chr5_4:25971444-25971463 None:intergenic 50.0%
! CCTGTTGGTAGATGGCAGAA+AGG - chr5_4:25971441-25971460 Msa0846230:three_prime_UTR 50.0%
CCTAGGAGAAGGAAAGAGGA+TGG + chr5_4:25972806-25972825 None:intergenic 50.0%
CCATCCTCTTTCCTTCTCCT+AGG - chr5_4:25972803-25972822 Msa0846230:intron 50.0%
GCAACCTAGGAGAAGGAAAG+AGG + chr5_4:25972810-25972829 None:intergenic 50.0%
GGGTCTACAGCAGAAGACTT+AGG - chr5_4:25973129-25973148 Msa0846230:intron 50.0%
TTGGATGAAGAACAGCTGGG+TGG - chr5_4:25973318-25973337 Msa0846230:intron 50.0%
TGGATGAAGAACAGCTGGGT+GGG - chr5_4:25973319-25973338 Msa0846230:intron 50.0%
! GGTTTGCTTGTGGTGACATG+TGG - chr5_4:25973340-25973359 Msa0846230:intron 50.0%
TCAATGGAGGGGAGTGGAAA+TGG - chr5_4:25974750-25974769 Msa0846230:intron 50.0%
TGAAATCACCCTAGGGCCTT+AGG - chr5_4:25974800-25974819 Msa0846230:intron 50.0%
AGGAACCAGGTTCTTCCCAA+GGG + chr5_4:25975251-25975270 None:intergenic 50.0%
GGAAGAACCTGGTTCCTCAA+AGG - chr5_4:25975254-25975273 Msa0846230:intron 50.0%
! TGCAAGACCTTTGAGGAACC+AGG + chr5_4:25975264-25975283 None:intergenic 50.0%
GAGAAGACGGGAAGAAAGGA+AGG - chr5_4:25975371-25975390 Msa0846230:intron 50.0%
!! GGATGATGGGAAAACCCAAG+AGG + chr5_4:25975540-25975559 None:intergenic 50.0%
TTAGGCCTACCATGGTCCTA+GGG - chr5_4:25975806-25975825 Msa0846230:intron 50.0%
AATGTCCCTAGGACCATGGT+AGG + chr5_4:25975814-25975833 None:intergenic 50.0%
TCCTAGGGACATTGCAGACA+TGG - chr5_4:25975821-25975840 Msa0846230:intron 50.0%
CCTAGGGACATTGCAGACAT+GGG - chr5_4:25975822-25975841 Msa0846230:intron 50.0%
GGTTGCTCTATAGTCCCCTT+AGG - chr5_4:25975860-25975879 Msa0846230:intron 50.0%
TCAGGGTTGAGCAACCTAAG+GGG + chr5_4:25975877-25975896 None:intergenic 50.0%
GGGCCTTTGAGCAAACATGA+GGG - chr5_4:25975996-25976015 Msa0846230:five_prime_UTR 50.0%
GGTCCCTCATGTTTGCTCAA+AGG + chr5_4:25976002-25976021 None:intergenic 50.0%
ACTTACGATCTCGACCGCCA+CGG + chr5_4:25971079-25971098 None:intergenic 55.0%
AAGAGGAGGAGCAGGCAATG+AGG - chr5_4:25973019-25973038 Msa0846230:intron 55.0%
AGAGGAGGAGCAGGCAATGA+GGG - chr5_4:25973020-25973039 Msa0846230:intron 55.0%
CAGGCAATGAGGGAAGCTCT+CGG - chr5_4:25973030-25973049 Msa0846230:intron 55.0%
AATGAGGGAAGCTCTCGGCT+TGG - chr5_4:25973035-25973054 Msa0846230:intron 55.0%
TGAGGACGACTAGCACGCTT+AGG + chr5_4:25973063-25973082 None:intergenic 55.0%
AAGCGTGCTAGTCGTCCTCA+AGG - chr5_4:25973063-25973082 Msa0846230:intron 55.0%
AAGGTCACGCTGAAGCAGCA+AGG - chr5_4:25973154-25973173 Msa0846230:intron 55.0%
AGGTCACGCTGAAGCAGCAA+GGG - chr5_4:25973155-25973174 Msa0846230:intron 55.0%
GCTGAAGCAGCAAGGGTTCA+AGG - chr5_4:25973162-25973181 Msa0846230:intron 55.0%
GCAGCAAGGGTTCAAGGTGT+TGG - chr5_4:25973168-25973187 Msa0846230:intron 55.0%
! TCCCCACCCACCAAAGTGTT+CGG - chr5_4:25974167-25974186 Msa0846230:intron 55.0%
! ACCCGAACACTTTGGTGGGT+GGG + chr5_4:25974172-25974191 None:intergenic 55.0%
TACCCGAACACTTTGGTGGG+TGG + chr5_4:25974173-25974192 None:intergenic 55.0%
GTGGTTTCAATGGAGGGGAG+TGG - chr5_4:25974744-25974763 Msa0846230:intron 55.0%
ATGGAGGGGAGTGGAAATGG+TGG - chr5_4:25974753-25974772 Msa0846230:intron 55.0%
CACCCTAGGGCCTTAGGTAT+AGG - chr5_4:25974806-25974825 Msa0846230:intron 55.0%
AACCAGGTTCTTCCCAAGGG+CGG + chr5_4:25975248-25975267 None:intergenic 55.0%
GAGGAACCAGGTTCTTCCCA+AGG + chr5_4:25975252-25975271 None:intergenic 55.0%
GGTCTTGCATACACCAGCTG+AGG - chr5_4:25975275-25975294 Msa0846230:intron 55.0%
TGAAAAGCGGCATTCCCGTG+AGG - chr5_4:25975404-25975423 Msa0846230:intron 55.0%
GTTAGGCCTACCATGGTCCT+AGG - chr5_4:25975805-25975824 Msa0846230:intron 55.0%
CTGCAATGTCCCTAGGACCA+TGG + chr5_4:25975818-25975837 None:intergenic 55.0%
CCCATGTCTGCAATGTCCCT+AGG + chr5_4:25975825-25975844 None:intergenic 55.0%
GGGGCCTTTGAGCAAACATG+AGG - chr5_4:25975995-25976014 Msa0846230:five_prime_UTR 55.0%
! CAGCTGGGTGGGTTTGCTTG+TGG - chr5_4:25973330-25973349 Msa0846230:intron 60.0%
GGGTGGGGAGATGGATACTG+TGG + chr5_4:25974156-25974175 None:intergenic 60.0%
! CACTTTGGTGGGTGGGGAGA+TGG + chr5_4:25974165-25974184 None:intergenic 60.0%
! CCCGAACACTTTGGTGGGTG+GGG + chr5_4:25974171-25974190 None:intergenic 60.0%
! CCCCACCCACCAAAGTGTTC+GGG - chr5_4:25974168-25974187 Msa0846230:intron 60.0%
TGTGCAGAGAACTCCGCCCT+TGG - chr5_4:25975232-25975251 Msa0846230:intron 60.0%
GTGCAGAGAACTCCGCCCTT+GGG - chr5_4:25975233-25975252 Msa0846230:intron 60.0%
CTCCGCCCTTGGGAAGAACC+TGG - chr5_4:25975243-25975262 Msa0846230:intron 65.0%
CCACGGACGCCACCTCGAGT+TGG + chr5_4:25971062-25971081 None:intergenic 70.0%
CCAACTCGAGGTGGCGTCCG+TGG - chr5_4:25971059-25971078 Msa0846230:three_prime_UTR 70.0%
ACTCGAGGTGGCGTCCGTGG+CGG - chr5_4:25971062-25971081 Msa0846230:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 25970916 25976096 25970916 ID=Msa0846230;Name=Msa0846230
chr5_4 mRNA 25970916 25976096 25970916 ID=Msa0846230-mRNA-1;Parent=Msa0846230;Name=Msa0846230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=134|1|1|1|1|1|4|569|229
chr5_4 exon 25970916 25971773 25970916 ID=Msa0846230-mRNA-1:exon:10251;Parent=Msa0846230-mRNA-1
chr5_4 exon 25973813 25974080 25973813 ID=Msa0846230-mRNA-1:exon:10250;Parent=Msa0846230-mRNA-1
chr5_4 exon 25975550 25975639 25975550 ID=Msa0846230-mRNA-1:exon:10249;Parent=Msa0846230-mRNA-1
chr5_4 exon 25975920 25976096 25975920 ID=Msa0846230-mRNA-1:exon:10248;Parent=Msa0846230-mRNA-1
chr5_4 five_prime_UTR 25975963 25976096 25975963 ID=Msa0846230-mRNA-1:five_prime_utr;Parent=Msa0846230-mRNA-1
chr5_4 CDS 25975920 25975962 25975920 ID=Msa0846230-mRNA-1:cds;Parent=Msa0846230-mRNA-1
chr5_4 CDS 25975550 25975639 25975550 ID=Msa0846230-mRNA-1:cds;Parent=Msa0846230-mRNA-1
chr5_4 CDS 25973813 25974080 25973813 ID=Msa0846230-mRNA-1:cds;Parent=Msa0846230-mRNA-1
chr5_4 CDS 25971485 25971773 25971485 ID=Msa0846230-mRNA-1:cds;Parent=Msa0846230-mRNA-1
chr5_4 three_prime_UTR 25970916 25971484 25970916 ID=Msa0846230-mRNA-1:three_prime_utr;Parent=Msa0846230-mRNA-1
Gene Sequence

>Msa0846230

ATGTATCATCCAACTCGAGGTGGCGTCCGTGGCGGTCGAGATCAATTCACTTGGGATGATGTAAAAGCTGATAAACACAGAGAGAATTATATAGGTCATAGTCTCAAGGCTCCTGTTGGTAGATGGCAGAAAGGGAAAGACCTTTTTTGGTATACCCGGGATAAAAAGTCCCAAAATGAAGAAATGGAGGCTGCAAAAGAAGAGATAAAAAGAATTAAGGAAGAGGAGGAGCAGGCAATGAGGGAAGCTCTCGGCTTGGCTCCTAAGCGTGCTAGTCGTCCTCAAGGTAACCGTCTTGATAAACATGAATTTTCAGAACTAGTAAAGAGAGGGTCTACAGCAGAAGACTTAGGTGAAGGTCACGCTGAAGCAGCAAGGGTTCAAGGTGTTGGTTTTGCAAGAGAACTCCGCCCTTGGGAAGAACCTGGTTCCTCAAAGGTCTTGCATACACCAGCTGAGGTAGAAAATGTATCTATGCCTAATCAATCACCAAGAAAGATTGAAGATGAATCTGAGGATGAAAGTAGAAAAAAGAGAAGACGGGAAGAAAGGAAGGAAGAGAAACGTGAAAAGCGGCATTCCCGTGAGGAAAGAAAGCAAGAGAAGCGTGAGAAACGGCATTCTCGTGATTCAGATGACAGGAAGAGACACAAGAAAGATAAAGAGAGGAGGAGGCATGATTCAGATTGA

Protein sequence

>Msa0846230

MYHPTRGGVRGGRDQFTWDDVKADKHRENYIGHSLKAPVGRWQKGKDLFWYTRDKKSQNEEMEAAKEEIKRIKEEEEQAMREALGLAPKRASRPQGNRLDKHEFSELVKRGSTAEDLGEGHAEAARVQGVGFARELRPWEEPGSSKVLHTPAEVENVSMPNQSPRKIEDESEDESRKKRRREERKEEKREKRHSREERKQEKREKRHSRDSDDRKRHKKDKERRRHDSD*