AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0726080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726080 MtrunA17_Chr5g0417851 97.380 229 6 0 1 229 1 229 2.66e-160 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726080 AT3G52220.1 64.384 219 70 5 1 213 1 217 1.02e-90 267

Find 101 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTCCATTTCTTCATTT+TGG 0.047448 5_1:+26415966 None:intergenic
GATTCATCTTCAATCTTTCT+TGG 0.204880 5_1:+26413608 None:intergenic
GGATATTGGCACTGCCATTT+TGG 0.220465 5_1:-26413279 Msa0726080:three_prime_UTR
ATTTACCGTTATCACTTATC+TGG 0.264081 5_1:-26413300 Msa0726080:three_prime_UTR
ACCACATAATAATGCCAAAA+TGG 0.304773 5_1:+26413265 None:intergenic
GTTATCACTTATCTGGATAT+TGG 0.318357 5_1:-26413293 Msa0726080:three_prime_UTR
TTCTCTTTGTATTTATAGTT+AGG 0.342744 5_1:-26413147 Msa0726080:three_prime_UTR
ATCTTTCTTGGTGATTGATT+AGG 0.343246 5_1:+26413620 None:intergenic
CGAACCCCTTTAGTTCTTGT+TGG 0.362773 5_1:-26417976 Msa0726080:five_prime_UTR
TAACGGTAAATACAGGCTTC+TGG 0.371032 5_1:+26413312 None:intergenic
AAAAGAGAAGACGGGAAGAA+AGG 0.371187 5_1:-26413568 Msa0726080:CDS
TCAAAGGCCCCTCAATTTAT+CGG 0.374816 5_1:+26412952 None:intergenic
CTCTTGCTTTCTTTCCTCAC+GGG 0.394011 5_1:+26413517 None:intergenic
CGAGTTGGATGATACATGTT+TGG 0.404504 5_1:+26417891 None:intergenic
GATTGAATACTCACTCCTCT+TGG 0.405428 5_1:-26413413 Msa0726080:exon
AAAGTCCCAAAATGAAGAAA+TGG 0.405533 5_1:-26415972 Msa0726080:CDS
TTTCATTTCACATTGGATGA+TGG 0.406497 5_1:+26413384 None:intergenic
TTCTTCCAACAAGAACTAAA+GGG 0.411466 5_1:+26417971 None:intergenic
TCAAGGCTCCTGTTGGTAGA+TGG 0.426647 5_1:-26417502 Msa0726080:CDS
AAACACAGAGAGAATTATAT+AGG 0.430798 5_1:-26417533 Msa0726080:CDS
GAGAAGACGGGAAGAAAGGA+AGG 0.440522 5_1:-26413564 Msa0726080:CDS
TTCATTTCACATTGGATGAT+GGG 0.441658 5_1:+26413385 None:intergenic
ATTGAATACTCACTCCTCTT+GGG 0.444034 5_1:-26413412 Msa0726080:exon
CCTTTCTGCCATCTACCAAC+AGG 0.451053 5_1:+26417494 None:intergenic
TCTCTTGCTTTCTTTCCTCA+CGG 0.454567 5_1:+26413516 None:intergenic
GGTTGCTCTATAGTCCCCTT+AGG 0.468027 5_1:-26413075 Msa0726080:three_prime_UTR
GCTGAAGCAGCAAGGGTTCA+AGG 0.474043 5_1:-26415773 Msa0726080:CDS
TGTGCAGAGAACTCCGCCCT+TGG 0.476704 5_1:-26413703 Msa0726080:intron
GTTCTTCCAACAAGAACTAA+AGG 0.477212 5_1:+26417970 None:intergenic
TAAGTGATAACGGTAAATAC+AGG 0.477229 5_1:+26413305 None:intergenic
GTTAGGCCTACCATGGTCCT+AGG 0.479312 5_1:-26413130 Msa0726080:three_prime_UTR
GCAGCAAGGGTTCAAGGTGT+TGG 0.487662 5_1:-26415767 Msa0726080:CDS
GGGTCTACAGCAGAAGACTT+AGG 0.489361 5_1:-26415806 Msa0726080:CDS
GTGCAGAGAACTCCGCCCTT+GGG 0.491260 5_1:-26413702 Msa0726080:intron
TGGTGTATGCAAGACCTTTG+AGG 0.493293 5_1:+26413667 None:intergenic
TTTCAGGGTTGAGCAACCTA+AGG 0.493942 5_1:+26413059 None:intergenic
AATTAAGGAAGAGGAGGAGC+AGG 0.497912 5_1:-26415924 Msa0726080:CDS
TATTATGTGGTGTTTCAAGT+TGG 0.499677 5_1:-26413253 Msa0726080:three_prime_UTR
ATCGGAATGAATCTTCTGAT+AGG 0.500284 5_1:-26412997 Msa0726080:three_prime_UTR
TCCTAGGGACATTGCAGACA+TGG 0.501105 5_1:-26413114 Msa0726080:three_prime_UTR
AGAGGAGGAGCAGGCAATGA+GGG 0.501735 5_1:-26415915 Msa0726080:CDS
AAAATTCATGTTTATCAAGA+CGG 0.507020 5_1:+26415846 None:intergenic
AGCAAGAGAAGCGTGAGAAA+CGG 0.508367 5_1:-26413502 Msa0726080:CDS
TGAGGACGACTAGCACGCTT+AGG 0.512346 5_1:+26415875 None:intergenic
TTTGATGGACAGAATTCACT+TGG 0.523959 5_1:-26417574 Msa0726080:intron
AGATACTCTCCGATAAATTG+AGG 0.525366 5_1:-26412961 Msa0726080:three_prime_UTR
CCAACTCGAGGTGGCGTCCG+TGG 0.525837 5_1:-26417876 Msa0726080:CDS
CCCATGTCTGCAATGTCCCT+AGG 0.526245 5_1:+26413113 None:intergenic
TGCAAGACCTTTGAGGAACC+AGG 0.527049 5_1:+26413674 None:intergenic
AGAAAGATAAAGAGAGGAGG+AGG 0.528808 5_1:-26413445 Msa0726080:CDS
ATCAAGATACTTCATGAGCT+TGG 0.529950 5_1:+26413210 None:intergenic
CTTCTGATAGGTTTGTGCAT+TGG 0.534592 5_1:-26412985 Msa0726080:three_prime_UTR
TTCAGGGTTGAGCAACCTAA+GGG 0.542091 5_1:+26413060 None:intergenic
CTCCGCCCTTGGGAAGAACC+TGG 0.543845 5_1:-26413692 Msa0726080:CDS
GAGGAACCAGGTTCTTCCCA+AGG 0.547002 5_1:+26413686 None:intergenic
AATATCCAGATAAGTGATAA+CGG 0.548202 5_1:+26413295 None:intergenic
AATGTCATTTCATTTCACAT+TGG 0.553869 5_1:+26413377 None:intergenic
AATAAGAAGATAGCTTCTGA+TGG 0.554691 5_1:-26413029 Msa0726080:three_prime_UTR
ATCAGAAGATTCATTCCGAT+CGG 0.563793 5_1:+26413000 None:intergenic
AAAGATTGAAGATGAATCTG+AGG 0.564195 5_1:-26413603 Msa0726080:CDS
AATGAGGGAAGCTCTCGGCT+TGG 0.564929 5_1:-26415900 Msa0726080:CDS
GATACTCTCCGATAAATTGA+GGG 0.565569 5_1:-26412960 Msa0726080:three_prime_UTR
CTGCAATGTCCCTAGGACCA+TGG 0.571604 5_1:+26413120 None:intergenic
GACACAAGAAAGATAAAGAG+AGG 0.577049 5_1:-26413451 Msa0726080:CDS
GGTCCCTCATGTTTGCTCAA+AGG 0.578356 5_1:+26412936 None:intergenic
AAGAGGAGGAGCAGGCAATG+AGG 0.579166 5_1:-26415916 Msa0726080:CDS
CCACGGACGCCACCTCGAGT+TGG 0.580213 5_1:+26417876 None:intergenic
ATTCTCGTGATTCAGATGAC+AGG 0.582090 5_1:-26413478 Msa0726080:CDS
TTTCAGAACTAGTAAAGAGA+GGG 0.582339 5_1:-26415826 Msa0726080:CDS
GGAAGAACCTGGTTCCTCAA+AGG 0.584885 5_1:-26413681 Msa0726080:CDS
TTAGGCCTACCATGGTCCTA+GGG 0.585638 5_1:-26413129 Msa0726080:three_prime_UTR
AGGAACCAGGTTCTTCCCAA+GGG 0.588462 5_1:+26413687 None:intergenic
CCTGTTGGTAGATGGCAGAA+AGG 0.593241 5_1:-26417494 Msa0726080:intron
GTCCCAAAATGAAGAAATGG+AGG 0.596320 5_1:-26415969 Msa0726080:CDS
AAGGTCACGCTGAAGCAGCA+AGG 0.608440 5_1:-26415781 Msa0726080:CDS
CATAGTCTCAAGGCTCCTGT+TGG 0.611584 5_1:-26417509 Msa0726080:CDS
TTATATAGGTCATAGTCTCA+AGG 0.617267 5_1:-26417519 Msa0726080:CDS
ATTTATAGTTAGGCCTACCA+TGG 0.617982 5_1:-26413137 Msa0726080:three_prime_UTR
ACTCGAGGTGGCGTCCGTGG+CGG 0.620619 5_1:-26417873 Msa0726080:CDS
GGGGCCTTTGAGCAAACATG+AGG 0.623230 5_1:-26412940 Msa0726080:three_prime_UTR
AGGTCACGCTGAAGCAGCAA+GGG 0.623464 5_1:-26415780 Msa0726080:CDS
TCTTCCAACAAGAACTAAAG+GGG 0.624644 5_1:+26417972 None:intergenic
CCTAGGGACATTGCAGACAT+GGG 0.625805 5_1:-26413113 Msa0726080:three_prime_UTR
AAGCGTGCTAGTCGTCCTCA+AGG 0.629339 5_1:-26415872 Msa0726080:CDS
CAGGCAATGAGGGAAGCTCT+CGG 0.634387 5_1:-26415905 Msa0726080:CDS
TTGATGGACAGAATTCACTT+GGG 0.635778 5_1:-26417573 Msa0726080:intron
AACCAGGTTCTTCCCAAGGG+CGG 0.636510 5_1:+26413690 None:intergenic
TTATCAAGACGGTTACCTTG+AGG 0.642277 5_1:+26415857 None:intergenic
GGTCTTGCATACACCAGCTG+AGG 0.643578 5_1:-26413660 Msa0726080:CDS
ACAGCAGAAGACTTAGGTGA+AGG 0.653024 5_1:-26415800 Msa0726080:CDS
AATGTCCCTAGGACCATGGT+AGG 0.660566 5_1:+26413124 None:intergenic
AGGAAGAGAAACGTGAAAAG+CGG 0.661820 5_1:-26413544 Msa0726080:CDS
ACAAGAAAGATAAAGAGAGG+AGG 0.663634 5_1:-26413448 Msa0726080:CDS
GGGCCTTTGAGCAAACATGA+GGG 0.669264 5_1:-26412939 Msa0726080:three_prime_UTR
ACTTACGATCTCGACCGCCA+CGG 0.670052 5_1:+26417859 None:intergenic
ATGTATCATCCAACTCGAGG+TGG 0.688754 5_1:-26417885 Msa0726080:CDS
ATACTCTCCGATAAATTGAG+GGG 0.694021 5_1:-26412959 Msa0726080:three_prime_UTR
AACATGTATCATCCAACTCG+AGG 0.703661 5_1:-26417888 Msa0726080:CDS
TCAGGGTTGAGCAACCTAAG+GGG 0.704922 5_1:+26413061 None:intergenic
TGAAAAGCGGCATTCCCGTG+AGG 0.706921 5_1:-26413531 Msa0726080:CDS
GGATGATGGGAAAACCCAAG+AGG 0.730485 5_1:+26413398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTAAATAATTTGATTTT+CGG + chr5_1:26412947-26412966 None:intergenic 10.0%
!! AACATTAACAAAATAAATAA+AGG + chr5_1:26413274-26413293 None:intergenic 10.0%
!!! TAAGAAAATTTAATTTTAAG+AGG + chr5_1:26415612-26415631 None:intergenic 10.0%
!!! ATTTATTTCCTTATTTAATT+AGG - chr5_1:26415655-26415674 Msa0726080:intron 10.0%
!! AATTTGTGAAATTTGAAAAA+GGG + chr5_1:26413088-26413107 None:intergenic 15.0%
!! TGAATTAAAAGGTTTAAATT+TGG + chr5_1:26414402-26414421 None:intergenic 15.0%
!! ATAAAAAGACAATTTAAAGA+TGG + chr5_1:26414850-26414869 None:intergenic 15.0%
!! AAAAATAAAACAAATGAAAC+AGG + chr5_1:26415224-26415243 None:intergenic 15.0%
!!! GTTTCATTTGTTTTATTTTT+AGG - chr5_1:26415224-26415243 Msa0726080:intron 15.0%
!! AGGATATCATATAAATTATT+TGG - chr5_1:26415244-26415263 Msa0726080:intron 15.0%
!!! TTATATTTAGGTTTTTTTCA+TGG - chr5_1:26415338-26415357 Msa0726080:intron 15.0%
!!! GTTTTGTATTGATATAAATA+AGG - chr5_1:26415685-26415704 Msa0726080:intron 15.0%
!!! TTATATTTAGATTTTTCTCA+TGG - chr5_1:26415900-26415919 Msa0726080:CDS 15.0%
!!! ATAAATCTTTTAAAAGAATC+AGG + chr5_1:26415931-26415950 None:intergenic 15.0%
!!! TTTTTCAGAAACAAAATTTT+AGG - chr5_1:26416329-26416348 Msa0726080:intron 15.0%
!! TTTAAAAAAAAAGCTGATTA+GGG + chr5_1:26416367-26416386 None:intergenic 15.0%
!!! AAAACTGTTATTTCTATTAA+AGG + chr5_1:26416479-26416498 None:intergenic 15.0%
!! CAATTATTTAATATAGAAGT+TGG - chr5_1:26416884-26416903 Msa0726080:intron 15.0%
!!! TAATTTTGTTCAAAAGATTT+TGG + chr5_1:26417983-26418002 None:intergenic 15.0%
!!! AGTTTTTTTTCAAGTTGAAA+GGG + chr5_1:26412879-26412898 None:intergenic 20.0%
!!! TAGTTTTTTTTCAAGTTGAA+AGG + chr5_1:26412880-26412899 None:intergenic 20.0%
!! GAATTTGTGAAATTTGAAAA+AGG + chr5_1:26413089-26413108 None:intergenic 20.0%
!! ACTATACATAAGAATTAAGA+TGG + chr5_1:26413123-26413142 None:intergenic 20.0%
!!! TATAAGCATAAGTTATTTTG+TGG + chr5_1:26413193-26413212 None:intergenic 20.0%
!! ATAAGGTAAGGTAAAATAAA+AGG + chr5_1:26413423-26413442 None:intergenic 20.0%
!! CATCAGTTTCTTAAAATTAT+AGG - chr5_1:26413723-26413742 Msa0726080:intron 20.0%
!! TCTTCAAATTAAGGTTAATT+GGG + chr5_1:26413819-26413838 None:intergenic 20.0%
!!! AAAACAACTTTTTAGATTCA+TGG - chr5_1:26413939-26413958 Msa0726080:intron 20.0%
!! TTCATGGAAATTATTGTATT+TGG - chr5_1:26413955-26413974 Msa0726080:intron 20.0%
!! CATTGAATAACTAATGTATT+TGG + chr5_1:26413994-26414013 None:intergenic 20.0%
!! TAAATAGCATAAGGAAATTT+CGG + chr5_1:26414144-26414163 None:intergenic 20.0%
!!! TATTGTTTATAGTCTTGTAT+AGG - chr5_1:26414194-26414213 Msa0726080:intron 20.0%
!! AGTAAATTGGTTGTTTAAAT+AGG - chr5_1:26414299-26414318 Msa0726080:intron 20.0%
!! GATATTAGATTTCAATTTGA+TGG - chr5_1:26414321-26414340 Msa0726080:intron 20.0%
!! TATCTAAACTTACATTACAT+TGG + chr5_1:26414649-26414668 None:intergenic 20.0%
!! TAAAATTTAAGAAGCTAGAA+AGG - chr5_1:26414687-26414706 Msa0726080:intron 20.0%
!!! AAATTGTCTTTTTATTCAAC+AGG - chr5_1:26414855-26414874 Msa0726080:intron 20.0%
!!! AATTGTCTTTTTATTCAACA+GGG - chr5_1:26414856-26414875 Msa0726080:intron 20.0%
!! AGAAGAGATAAAAAGAATTA+AGG - chr5_1:26414941-26414960 Msa0726080:intron 20.0%
!! AAAATTCATGTTTATCAAGA+CGG + chr5_1:26415037-26415056 None:intergenic 20.0%
!!! AATAAAGCTCTAAAAATCAT+TGG + chr5_1:26415377-26415396 None:intergenic 20.0%
!!! TTCTTATTTCTTTGTTATGA+TGG - chr5_1:26415626-26415645 Msa0726080:intron 20.0%
!! CTCTAAATCCTAATTAAATA+AGG + chr5_1:26415666-26415685 None:intergenic 20.0%
!!! GAGTTCTAAAATTGTAAATA+TGG + chr5_1:26415763-26415782 None:intergenic 20.0%
!! CAAATCATAAATAAACAAAG+TGG + chr5_1:26416278-26416297 None:intergenic 20.0%
!!! CACTTTGTTTATTTATGATT+TGG - chr5_1:26416276-26416295 Msa0726080:intron 20.0%
!!! CTTTAAAAAAAAAGCTGATT+AGG + chr5_1:26416368-26416387 None:intergenic 20.0%
!! TTCGCCATATAATAAATAAA+GGG + chr5_1:26416526-26416545 None:intergenic 20.0%
!! TTTCGCCATATAATAAATAA+AGG + chr5_1:26416527-26416546 None:intergenic 20.0%
!! AATAAGTTACAATAATAGCA+CGG + chr5_1:26417148-26417167 None:intergenic 20.0%
!! ATACAAAGAGAAGATAAAAA+CGG + chr5_1:26417725-26417744 None:intergenic 20.0%
!! TTCTCTTTGTATTTATAGTT+AGG - chr5_1:26417733-26417752 Msa0726080:intron 20.0%
!!! GTTTTTTTTCAAGTTGAAAG+GGG + chr5_1:26412878-26412897 None:intergenic 25.0%
! TTGGAAAATTGAAATTGAGA+TGG + chr5_1:26413051-26413070 None:intergenic 25.0%
! AATTAAGATGGAATTGAAGA+AGG + chr5_1:26413111-26413130 None:intergenic 25.0%
!!! TAAGTTATTTTGTGGAAATC+AGG + chr5_1:26413185-26413204 None:intergenic 25.0%
! AAACACAGAGAGAATTATAT+AGG - chr5_1:26413347-26413366 Msa0726080:three_prime_UTR 25.0%
! TGAATTAAAGGAATAAGGTA+AGG + chr5_1:26413435-26413454 None:intergenic 25.0%
! ACGTATGAATTAAAGGAATA+AGG + chr5_1:26413440-26413459 None:intergenic 25.0%
!!! CTATAGAAGACTTGTTTTAT+TGG - chr5_1:26413585-26413604 Msa0726080:CDS 25.0%
! ATAGCTATTTGATTGACAAT+AGG - chr5_1:26413629-26413648 Msa0726080:CDS 25.0%
! TTCTTAAAATTATAGGCTCT+TGG - chr5_1:26413730-26413749 Msa0726080:intron 25.0%
! TCTTAAAATTATAGGCTCTT+GGG - chr5_1:26413731-26413750 Msa0726080:intron 25.0%
! CTTCAAATTAAGGTTAATTG+GGG + chr5_1:26413818-26413837 None:intergenic 25.0%
! GTCTTCAAATTAAGGTTAAT+TGG + chr5_1:26413820-26413839 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr5_1:26413922-26413941 None:intergenic 25.0%
! GAAGAAAAGTAAATAGCATA+AGG + chr5_1:26414153-26414172 None:intergenic 25.0%
!!! CTATTTACTTTTCTTCAACA+TGG - chr5_1:26414157-26414176 Msa0726080:intron 25.0%
! ATTCAATCAAAACTGTTGAT+CGG - chr5_1:26414263-26414282 Msa0726080:intron 25.0%
!!! CTTTTAATTCAAAGCTCATA+GGG - chr5_1:26414411-26414430 Msa0726080:intron 25.0%
!!! TTTTAATTCAAAGCTCATAG+GGG - chr5_1:26414412-26414431 Msa0726080:intron 25.0%
!!! TTTTCGTCATTTTGGTTTTA+TGG - chr5_1:26414511-26414530 Msa0726080:intron 25.0%
!!! TCATTTTGGTTTTATGGTTT+AGG - chr5_1:26414517-26414536 Msa0726080:intron 25.0%
! TAAACTTACATTACATTGGA+TGG + chr5_1:26414645-26414664 None:intergenic 25.0%
! ATAAACATTAGACTGTTGTT+TGG - chr5_1:26414802-26414821 Msa0726080:intron 25.0%
! GATAAAAAGAATTAAGGAAG+AGG - chr5_1:26414947-26414966 Msa0726080:intron 25.0%
! GAGTCTGATGTATTATATTT+AGG - chr5_1:26415326-26415345 Msa0726080:intron 25.0%
!!! AGCAAATTCTTTTAGCTTAT+AGG - chr5_1:26415401-26415420 Msa0726080:intron 25.0%
!!! TGTTAGGTCTTTTATTTACT+GGG + chr5_1:26415441-26415460 None:intergenic 25.0%
! AAAATCTTGAATAAGCTGTT+AGG + chr5_1:26415457-26415476 None:intergenic 25.0%
! AATTGTAATCATGCAATTCT+TGG + chr5_1:26415495-26415514 None:intergenic 25.0%
! AGAGTAGATATCCAAAAAAT+GGG + chr5_1:26416161-26416180 None:intergenic 25.0%
! TAGAGTAGATATCCAAAAAA+TGG + chr5_1:26416162-26416181 None:intergenic 25.0%
! AGTAAAAGCTTAGAAATTAC+AGG + chr5_1:26416242-26416261 None:intergenic 25.0%
!! GAAATAACAGTTTTTGTAGA+AGG - chr5_1:26416485-26416504 Msa0726080:intron 25.0%
! ATATAACTTTCCTATACCTA+AGG + chr5_1:26416764-26416783 None:intergenic 25.0%
! TAACATATGAATGCTTAGTT+TGG - chr5_1:26416860-26416879 Msa0726080:intron 25.0%
! AAAGTAGAAAAAAGAGAAGA+CGG - chr5_1:26417303-26417322 Msa0726080:intron 25.0%
!! AATGTCATTTCATTTCACAT+TGG + chr5_1:26417506-26417525 None:intergenic 25.0%
!!! CTAGTTTCATGACTTATTTT+CGG - chr5_1:26417532-26417551 Msa0726080:CDS 25.0%
! AATATCCAGATAAGTGATAA+CGG + chr5_1:26417588-26417607 None:intergenic 25.0%
!!! TTCTTATTGACCTTTTTTCA+GGG + chr5_1:26417839-26417858 None:intergenic 25.0%
!!! GATTTTGGAAATTGCAATAT+AGG + chr5_1:26417968-26417987 None:intergenic 25.0%
TTCTTCCAACAAGAACTAAA+GGG + chr5_1:26412912-26412931 None:intergenic 30.0%
GTGAAATTTGAAAAAGGGAA+AGG + chr5_1:26413083-26413102 None:intergenic 30.0%
TTATATAGGTCATAGTCTCA+AGG - chr5_1:26413361-26413380 Msa0726080:three_prime_UTR 30.0%
TGAATTGTGATGTCAAATAG+CGG - chr5_1:26413476-26413495 Msa0726080:CDS 30.0%
TAGTCACATCATATAGTCTT+CGG + chr5_1:26413690-26413709 None:intergenic 30.0%
CTTAAAATTATAGGCTCTTG+GGG - chr5_1:26413732-26413751 Msa0726080:intron 30.0%
! GATCTAAGGTCTTCAAATTA+AGG + chr5_1:26413828-26413847 None:intergenic 30.0%
ATGTATTTGGTCTACAAATG+TGG + chr5_1:26413981-26414000 None:intergenic 30.0%
CCAAACATATACAATGCAAA+AGG + chr5_1:26414078-26414097 None:intergenic 30.0%
! CCTTTTGCATTGTATATGTT+TGG - chr5_1:26414075-26414094 Msa0726080:intron 30.0%
TCAGTCTTTGCTTAGTAAAT+TGG - chr5_1:26414286-26414305 Msa0726080:intron 30.0%
! AAGATCTGAAGTTTCTTCTA+TGG - chr5_1:26414351-26414370 Msa0726080:intron 30.0%
!! TTAAATTTGGCTCTAGACTT+GGG + chr5_1:26414389-26414408 None:intergenic 30.0%
!! TTTAAATTTGGCTCTAGACT+TGG + chr5_1:26414390-26414409 None:intergenic 30.0%
!! CCTATGAGCTTTGAATTAAA+AGG + chr5_1:26414413-26414432 None:intergenic 30.0%
!! CCTTTTAATTCAAAGCTCAT+AGG - chr5_1:26414410-26414429 Msa0726080:intron 30.0%
!!! CAGCTTTATTTTCGTCATTT+TGG - chr5_1:26414503-26414522 Msa0726080:intron 30.0%
!!! TGGTTTTATGGTTTAGGTTA+TGG - chr5_1:26414523-26414542 Msa0726080:intron 30.0%
TGGCTATTCACATCTAAATA+AGG - chr5_1:26414822-26414841 Msa0726080:intron 30.0%
GGCTATTCACATCTAAATAA+GGG - chr5_1:26414823-26414842 Msa0726080:intron 30.0%
AAAGTCCCAAAATGAAGAAA+TGG - chr5_1:26414908-26414927 Msa0726080:intron 30.0%
AAAAAGAATTAAGGAAGAGG+AGG - chr5_1:26414950-26414969 Msa0726080:intron 30.0%
! TTTTCAGAACTAGTAAAGAG+AGG - chr5_1:26415053-26415072 Msa0726080:intron 30.0%
TTTCAGAACTAGTAAAGAGA+GGG - chr5_1:26415054-26415073 Msa0726080:intron 30.0%
!! CTGTTAGGTCTTTTATTTAC+TGG + chr5_1:26415442-26415461 None:intergenic 30.0%
ACTTATTTGTGCATCTTTGA+AGG + chr5_1:26415546-26415565 None:intergenic 30.0%
AAACACACTGTTGAAGTTTA+GGG + chr5_1:26415819-26415838 None:intergenic 30.0%
! CTGGCCCTTTATTTATTATA+TGG - chr5_1:26416519-26416538 Msa0726080:intron 30.0%
AGTCTTCCAAATAATAGATG+TGG + chr5_1:26416563-26416582 None:intergenic 30.0%
ACATCTATTATTTGGAAGAC+TGG - chr5_1:26416562-26416581 Msa0726080:intron 30.0%
GGTATAAAGATGGAAAAGAA+AGG + chr5_1:26416642-26416661 None:intergenic 30.0%
! ACATTAGCTTGGTATAAAGA+TGG + chr5_1:26416652-26416671 None:intergenic 30.0%
! ATATCCCTTATTTGTTAAGC+TGG - chr5_1:26416797-26416816 Msa0726080:intron 30.0%
TAGACCAGCTTAACAAATAA+GGG + chr5_1:26416804-26416823 None:intergenic 30.0%
TTAGACCAGCTTAACAAATA+AGG + chr5_1:26416805-26416824 None:intergenic 30.0%
! AGTTTGTGTCATTCTAACTT+TGG - chr5_1:26416927-26416946 Msa0726080:intron 30.0%
!!! GCAGTTGCATTTTGAAATAA+TGG - chr5_1:26416949-26416968 Msa0726080:intron 30.0%
! TAGTTTAACTTCGTAAGCAA+AGG + chr5_1:26417091-26417110 None:intergenic 30.0%
! ATCTTTCTTGGTGATTGATT+AGG + chr5_1:26417263-26417282 None:intergenic 30.0%
GATTCATCTTCAATCTTTCT+TGG + chr5_1:26417275-26417294 None:intergenic 30.0%
AAAGATTGAAGATGAATCTG+AGG - chr5_1:26417277-26417296 Msa0726080:intron 30.0%
AAGTAGAAAAAAGAGAAGAC+GGG - chr5_1:26417304-26417323 Msa0726080:intron 30.0%
TTCATTTCACATTGGATGAT+GGG + chr5_1:26417498-26417517 None:intergenic 30.0%
TTTCATTTCACATTGGATGA+TGG + chr5_1:26417499-26417518 None:intergenic 30.0%
!! TAAGTGATAACGGTAAATAC+AGG + chr5_1:26417578-26417597 None:intergenic 30.0%
ATTTACCGTTATCACTTATC+TGG - chr5_1:26417580-26417599 Msa0726080:intron 30.0%
GTTATCACTTATCTGGATAT+TGG - chr5_1:26417587-26417606 Msa0726080:intron 30.0%
ACCACATAATAATGCCAAAA+TGG + chr5_1:26417618-26417637 None:intergenic 30.0%
! TATTATGTGGTGTTTCAAGT+TGG - chr5_1:26417627-26417646 Msa0726080:intron 30.0%
!!! CTTCTTATTGACCTTTTTTC+AGG + chr5_1:26417840-26417859 None:intergenic 30.0%
AATAAGAAGATAGCTTCTGA+TGG - chr5_1:26417851-26417870 Msa0726080:intron 30.0%
TCTTCCAACAAGAACTAAAG+GGG + chr5_1:26412911-26412930 None:intergenic 35.0%
GTTCTTCCAACAAGAACTAA+AGG + chr5_1:26412913-26412932 None:intergenic 35.0%
AAGGGAAAGGATTGAATAGT+TGG + chr5_1:26413070-26413089 None:intergenic 35.0%
!! GTTGTGTTTCTCACTTTTGA+TGG - chr5_1:26413291-26413310 Msa0726080:three_prime_UTR 35.0%
! TTTGATGGACAGAATTCACT+TGG - chr5_1:26413306-26413325 Msa0726080:three_prime_UTR 35.0%
! TTGATGGACAGAATTCACTT+GGG - chr5_1:26413307-26413326 Msa0726080:three_prime_UTR 35.0%
! CAATTCACAAGTATTTTCCG+CGG + chr5_1:26413463-26413482 None:intergenic 35.0%
GAAGACTATATGATGTGACT+AGG - chr5_1:26413689-26413708 Msa0726080:CDS 35.0%
TATGATGTGACTAGGACATT+AGG - chr5_1:26413697-26413716 Msa0726080:CDS 35.0%
ATGATGTGACTAGGACATTA+GGG - chr5_1:26413698-26413717 Msa0726080:CDS 35.0%
CTTGTTAGCAATATCGTTTG+CGG - chr5_1:26413757-26413776 Msa0726080:intron 35.0%
TTGCTTATAAATGTGACCAG+AGG - chr5_1:26414031-26414050 Msa0726080:intron 35.0%
TGCTTATAAATGTGACCAGA+GGG - chr5_1:26414032-26414051 Msa0726080:intron 35.0%
TTGAATCACACACATAGAAC+AGG + chr5_1:26414249-26414268 None:intergenic 35.0%
TTAAGGAGAAACTTAGGTGA+TGG + chr5_1:26414447-26414466 None:intergenic 35.0%
TTTATAAGCAACCTAGGAGA+AGG + chr5_1:26414762-26414781 None:intergenic 35.0%
TTCTCCTAGGTTGCTTATAA+AGG - chr5_1:26414761-26414780 Msa0726080:intron 35.0%
TCTCCTAGGTTGCTTATAAA+GGG - chr5_1:26414762-26414781 Msa0726080:intron 35.0%
!!! AAGACCTTTTTTGGTATACC+CGG - chr5_1:26414880-26414899 Msa0726080:intron 35.0%
!!! ATTTTGGGACTTTTTATCCC+GGG + chr5_1:26414901-26414920 None:intergenic 35.0%
!!! CATTTTGGGACTTTTTATCC+CGG + chr5_1:26414902-26414921 None:intergenic 35.0%
! AGCCTCCATTTCTTCATTTT+GGG + chr5_1:26414916-26414935 None:intergenic 35.0%
TTATTTGGATGAAGAACAGC+TGG - chr5_1:26415259-26415278 Msa0726080:intron 35.0%
TATTTGGATGAAGAACAGCT+GGG - chr5_1:26415260-26415279 Msa0726080:intron 35.0%
!! CTTTTATTTACTGGGCTGTT+AGG + chr5_1:26415433-26415452 None:intergenic 35.0%
! TTTGTGCATCTTTGAAGGAA+AGG + chr5_1:26415541-26415560 None:intergenic 35.0%
CAAACACACTGTTGAAGTTT+AGG + chr5_1:26415820-26415839 None:intergenic 35.0%
GCTTCAACAAATCTGAACTT+TGG + chr5_1:26416013-26416032 None:intergenic 35.0%
!! AGATTTGTTGAAGCATGAGA+TGG - chr5_1:26416019-26416038 Msa0726080:intron 35.0%
! AAGATACCCATTTTCAGTCA+AGG - chr5_1:26416072-26416091 Msa0726080:intron 35.0%
! AGATACCCATTTTCAGTCAA+GGG - chr5_1:26416073-26416092 Msa0726080:intron 35.0%
TCCACTCCACATCTATTATT+TGG - chr5_1:26416554-26416573 Msa0726080:intron 35.0%
TCCAAATAATAGATGTGGAG+TGG + chr5_1:26416558-26416577 None:intergenic 35.0%
CACTAACATAGACATTAGCT+TGG + chr5_1:26416663-26416682 None:intergenic 35.0%
! GTCTATGTTAGTGTTACTAG+TGG - chr5_1:26416670-26416689 Msa0726080:intron 35.0%
! AGTGTTACTAGTGGTTTCAA+TGG - chr5_1:26416679-26416698 Msa0726080:intron 35.0%
TTACTAGTGGTTTCAATGGA+GGG - chr5_1:26416683-26416702 Msa0726080:intron 35.0%
TAACATTGTGAAATCACCCT+AGG - chr5_1:26416737-26416756 Msa0726080:intron 35.0%
AACATTGTGAAATCACCCTA+GGG - chr5_1:26416738-26416757 Msa0726080:intron 35.0%
AACACCGAAACTACTTAACA+TGG - chr5_1:26416823-26416842 Msa0726080:intron 35.0%
ACACCGAAACTACTTAACAT+GGG - chr5_1:26416824-26416843 Msa0726080:intron 35.0%
CAACCCATGTTAAGTAGTTT+CGG + chr5_1:26416830-26416849 None:intergenic 35.0%
ATGACACAAACTTGAAGAGT+GGG + chr5_1:26416919-26416938 None:intergenic 35.0%
AATGACACAAACTTGAAGAG+TGG + chr5_1:26416920-26416939 None:intergenic 35.0%
TGGAAAACAAACACAAGAGA+TGG + chr5_1:26417119-26417138 None:intergenic 35.0%
CAATAATAGCACGGAATTTC+TGG + chr5_1:26417139-26417158 None:intergenic 35.0%
GACACAAGAAAGATAAAGAG+AGG - chr5_1:26417429-26417448 Msa0726080:intron 35.0%
ACAAGAAAGATAAAGAGAGG+AGG - chr5_1:26417432-26417451 Msa0726080:intron 35.0%
ATTGAATACTCACTCCTCTT+GGG - chr5_1:26417468-26417487 Msa0726080:intron 35.0%
!! GCCATTTTGGCATTATTATG+TGG - chr5_1:26417614-26417633 Msa0726080:intron 35.0%
ATCAAGATACTTCATGAGCT+TGG + chr5_1:26417673-26417692 None:intergenic 35.0%
ATTTATAGTTAGGCCTACCA+TGG - chr5_1:26417743-26417762 Msa0726080:intron 35.0%
ATCAGAAGATTCATTCCGAT+CGG + chr5_1:26417883-26417902 None:intergenic 35.0%
ATCGGAATGAATCTTCTGAT+AGG - chr5_1:26417883-26417902 Msa0726080:CDS 35.0%
AGATACTCTCCGATAAATTG+AGG - chr5_1:26417919-26417938 Msa0726080:five_prime_UTR 35.0%
GATACTCTCCGATAAATTGA+GGG - chr5_1:26417920-26417939 Msa0726080:five_prime_UTR 35.0%
ATACTCTCCGATAAATTGAG+GGG - chr5_1:26417921-26417940 Msa0726080:five_prime_UTR 35.0%
!! CATTTTGAGTCTGACTACAT+AGG - chr5_1:26418008-26418027 Msa0726080:five_prime_UTR 35.0%
! CGAGTTGGATGATACATGTT+TGG + chr5_1:26412992-26413011 None:intergenic 40.0%
AACATGTATCATCCAACTCG+AGG - chr5_1:26412992-26413011 Msa0726080:three_prime_UTR 40.0%
TTGTGGAAATCAGGCTTATG+TGG + chr5_1:26413176-26413195 None:intergenic 40.0%
TCCTTTAATTCATACGTCCG+CGG - chr5_1:26413443-26413462 Msa0726080:CDS 40.0%
GTTAAAATTCTGCTGCACGA+TGG + chr5_1:26413510-26413529 None:intergenic 40.0%
! CACTTGAAGAGTGTGATCTA+AGG + chr5_1:26413842-26413861 None:intergenic 40.0%
CTTAGATCACACTCTTCAAG+TGG - chr5_1:26413840-26413859 Msa0726080:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr5_1:26413918-26413937 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr5_1:26413919-26413938 None:intergenic 40.0%
TAGGATAAAGTGCAGGCTTA+AGG + chr5_1:26414464-26414483 None:intergenic 40.0%
TACAAATGTAGCCTGAGGAT+AGG + chr5_1:26414483-26414502 None:intergenic 40.0%
! AAGCACTGCATATGCTATGT+TGG - chr5_1:26414581-26414600 Msa0726080:intron 40.0%
ACTGCATATGCTATGTTGGT+TGG - chr5_1:26414585-26414604 Msa0726080:intron 40.0%
AGAAGCTAGAAAGGTTGAAG+AGG - chr5_1:26414696-26414715 Msa0726080:intron 40.0%
GAAGCTAGAAAGGTTGAAGA+GGG - chr5_1:26414697-26414716 Msa0726080:intron 40.0%
CTACCCTTTATAAGCAACCT+AGG + chr5_1:26414768-26414787 None:intergenic 40.0%
AGGTTGCTTATAAAGGGTAG+AGG - chr5_1:26414768-26414787 Msa0726080:intron 40.0%
GGTTGCTTATAAAGGGTAGA+GGG - chr5_1:26414769-26414788 Msa0726080:intron 40.0%
!!! CAACAGGGAAAGACCTTTTT+TGG - chr5_1:26414871-26414890 Msa0726080:intron 40.0%
!!! AGACCTTTTTTGGTATACCC+GGG - chr5_1:26414881-26414900 Msa0726080:intron 40.0%
TATCCCGGGTATACCAAAAA+AGG + chr5_1:26414887-26414906 None:intergenic 40.0%
GTCCCAAAATGAAGAAATGG+AGG - chr5_1:26414911-26414930 Msa0726080:intron 40.0%
! CAGCCTCCATTTCTTCATTT+TGG + chr5_1:26414917-26414936 None:intergenic 40.0%
TTATCAAGACGGTTACCTTG+AGG + chr5_1:26415026-26415045 None:intergenic 40.0%
!!! TTCAAGGTGTTGGTTTTGCA+AGG - chr5_1:26415123-26415142 Msa0726080:intron 40.0%
! GTTTAGGGTGTTAGATAGAG+AGG + chr5_1:26415804-26415823 None:intergenic 40.0%
TTCAACAGTGTGTTTGCTTC+TGG - chr5_1:26415824-26415843 Msa0726080:CDS 40.0%
GTTTGCTTCTGGTCACATTT+AGG - chr5_1:26415835-26415854 Msa0726080:CDS 40.0%
AAGCATGAGATGGTAGTAAG+TGG - chr5_1:26416029-26416048 Msa0726080:intron 40.0%
AGCATGAGATGGTAGTAAGT+GGG - chr5_1:26416030-26416049 Msa0726080:intron 40.0%
TGGTACCCTTGACTGAAAAT+GGG + chr5_1:26416081-26416100 None:intergenic 40.0%
CCAAAAAATGGGTCTGAACA+TGG + chr5_1:26416150-26416169 None:intergenic 40.0%
!!! CCATGTTCAGACCCATTTTT+TGG - chr5_1:26416147-26416166 Msa0726080:intron 40.0%
GTTACTAGTGGTTTCAATGG+AGG - chr5_1:26416682-26416701 Msa0726080:intron 40.0%
TACTAGTGGTTTCAATGGAG+GGG - chr5_1:26416684-26416703 Msa0726080:intron 40.0%
!! CTACTTAACATGGGTTGATG+TGG - chr5_1:26416833-26416852 Msa0726080:intron 40.0%
! GATACATTTTCTACCTCAGC+TGG + chr5_1:26417236-26417255 None:intergenic 40.0%
AAAAGAGAAGACGGGAAGAA+AGG - chr5_1:26417312-26417331 Msa0726080:intron 40.0%
AGGAAGAGAAACGTGAAAAG+CGG - chr5_1:26417336-26417355 Msa0726080:intron 40.0%
TCTCTTGCTTTCTTTCCTCA+CGG + chr5_1:26417367-26417386 None:intergenic 40.0%
ATTCTCGTGATTCAGATGAC+AGG - chr5_1:26417402-26417421 Msa0726080:intron 40.0%
AGAAAGATAAAGAGAGGAGG+AGG - chr5_1:26417435-26417454 Msa0726080:intron 40.0%
GATTGAATACTCACTCCTCT+TGG - chr5_1:26417467-26417486 Msa0726080:intron 40.0%
TAACGGTAAATACAGGCTTC+TGG + chr5_1:26417571-26417590 None:intergenic 40.0%
CAGACATGGGCAAAAATTCT+TGG - chr5_1:26417780-26417799 Msa0726080:intron 40.0%
CATGGGCAAAAATTCTTGGA+AGG - chr5_1:26417784-26417803 Msa0726080:intron 40.0%
TTCTGATGGAAAAAGCCGAT+CGG - chr5_1:26417865-26417884 Msa0726080:CDS 40.0%
CTTCTGATAGGTTTGTGCAT+TGG - chr5_1:26417895-26417914 Msa0726080:exon 40.0%
TCAAAGGCCCCTCAATTTAT+CGG + chr5_1:26417931-26417950 None:intergenic 40.0%
!! CGAACCCCTTTAGTTCTTGT+TGG - chr5_1:26412904-26412923 Msa0726080:three_prime_UTR 45.0%
ATGTATCATCCAACTCGAGG+TGG - chr5_1:26412995-26413014 Msa0726080:three_prime_UTR 45.0%
TCCGCGGACGTATGAATTAA+AGG + chr5_1:26413447-26413466 None:intergenic 45.0%
! TTAATTGGGGTTAGTGCAGC+AGG + chr5_1:26413805-26413824 None:intergenic 45.0%
TTCTTGAAGTGTACTCCCTC+CGG - chr5_1:26413900-26413919 Msa0726080:intron 45.0%
AGCTTGCATAATACTCCCTC+TGG + chr5_1:26414050-26414069 None:intergenic 45.0%
!! GGGAGTATTATGCAAGCTGA+AGG - chr5_1:26414052-26414071 Msa0726080:intron 45.0%
GCAGGCTTAAGGAGAAACTT+AGG + chr5_1:26414453-26414472 None:intergenic 45.0%
CTGAGGATAGGATAAAGTGC+AGG + chr5_1:26414471-26414490 None:intergenic 45.0%
CTGCACTTTATCCTATCCTC+AGG - chr5_1:26414469-26414488 Msa0726080:intron 45.0%
AGCTGTACAAATGTAGCCTG+AGG + chr5_1:26414488-26414507 None:intergenic 45.0%
AATTAAGGAAGAGGAGGAGC+AGG - chr5_1:26414956-26414975 Msa0726080:intron 45.0%
ACAGCAGAAGACTTAGGTGA+AGG - chr5_1:26415080-26415099 Msa0726080:intron 45.0%
GCATGAGATGGTAGTAAGTG+GGG - chr5_1:26416031-26416050 Msa0726080:intron 45.0%
GTGGTACCCTTGACTGAAAA+TGG + chr5_1:26416082-26416101 None:intergenic 45.0%
AGTTACCCGAACACTTTGGT+GGG + chr5_1:26416121-26416140 None:intergenic 45.0%
TAGTTACCCGAACACTTTGG+TGG + chr5_1:26416122-26416141 None:intergenic 45.0%
GTGTAGTTACCCGAACACTT+TGG + chr5_1:26416125-26416144 None:intergenic 45.0%
GTAGAAGGATCACAACAAGC+TGG - chr5_1:26416500-26416519 Msa0726080:intron 45.0%
TTCCTATACCTAAGGCCCTA+GGG + chr5_1:26416756-26416775 None:intergenic 45.0%
TTTCCTATACCTAAGGCCCT+AGG + chr5_1:26416757-26416776 None:intergenic 45.0%
TGGTGTATGCAAGACCTTTG+AGG + chr5_1:26417216-26417235 None:intergenic 45.0%
CTCTTGCTTTCTTTCCTCAC+GGG + chr5_1:26417366-26417385 None:intergenic 45.0%
! AGCAAGAGAAGCGTGAGAAA+CGG - chr5_1:26417378-26417397 Msa0726080:intron 45.0%
!! GGATATTGGCACTGCCATTT+TGG - chr5_1:26417601-26417620 Msa0726080:intron 45.0%
TTCAGGGTTGAGCAACCTAA+GGG + chr5_1:26417823-26417842 None:intergenic 45.0%
TTTCAGGGTTGAGCAACCTA+AGG + chr5_1:26417824-26417843 None:intergenic 45.0%
GGTTGCTCAACCCTGAAAAA+AGG - chr5_1:26417826-26417845 Msa0726080:intron 45.0%
CATAGTCTCAAGGCTCCTGT+TGG - chr5_1:26413371-26413390 Msa0726080:three_prime_UTR 50.0%
! TCAAGGCTCCTGTTGGTAGA+TGG - chr5_1:26413378-26413397 Msa0726080:three_prime_UTR 50.0%
CCTTTCTGCCATCTACCAAC+AGG + chr5_1:26413389-26413408 None:intergenic 50.0%
! CCTGTTGGTAGATGGCAGAA+AGG - chr5_1:26413386-26413405 Msa0726080:three_prime_UTR 50.0%
CCTAGGAGAAGGAAAGAGGA+TGG + chr5_1:26414751-26414770 None:intergenic 50.0%
CCATCCTCTTTCCTTCTCCT+AGG - chr5_1:26414748-26414767 Msa0726080:intron 50.0%
GCAACCTAGGAGAAGGAAAG+AGG + chr5_1:26414755-26414774 None:intergenic 50.0%
GGGTCTACAGCAGAAGACTT+AGG - chr5_1:26415074-26415093 Msa0726080:intron 50.0%
TTGGATGAAGAACAGCTGGG+TGG - chr5_1:26415263-26415282 Msa0726080:intron 50.0%
TGGATGAAGAACAGCTGGGT+GGG - chr5_1:26415264-26415283 Msa0726080:intron 50.0%
! GGTTTGCTTGTGGTGACATG+TGG - chr5_1:26415285-26415304 Msa0726080:intron 50.0%
TCAATGGAGGGGAGTGGAAA+TGG - chr5_1:26416695-26416714 Msa0726080:intron 50.0%
TGAAATCACCCTAGGGCCTT+AGG - chr5_1:26416745-26416764 Msa0726080:intron 50.0%
AGGAACCAGGTTCTTCCCAA+GGG + chr5_1:26417196-26417215 None:intergenic 50.0%
GGAAGAACCTGGTTCCTCAA+AGG - chr5_1:26417199-26417218 Msa0726080:intron 50.0%
! TGCAAGACCTTTGAGGAACC+AGG + chr5_1:26417209-26417228 None:intergenic 50.0%
GAGAAGACGGGAAGAAAGGA+AGG - chr5_1:26417316-26417335 Msa0726080:intron 50.0%
!! GGATGATGGGAAAACCCAAG+AGG + chr5_1:26417485-26417504 None:intergenic 50.0%
TTAGGCCTACCATGGTCCTA+GGG - chr5_1:26417751-26417770 Msa0726080:intron 50.0%
AATGTCCCTAGGACCATGGT+AGG + chr5_1:26417759-26417778 None:intergenic 50.0%
TCCTAGGGACATTGCAGACA+TGG - chr5_1:26417766-26417785 Msa0726080:intron 50.0%
CCTAGGGACATTGCAGACAT+GGG - chr5_1:26417767-26417786 Msa0726080:intron 50.0%
GGTTGCTCTATAGTCCCCTT+AGG - chr5_1:26417805-26417824 Msa0726080:intron 50.0%
TCAGGGTTGAGCAACCTAAG+GGG + chr5_1:26417822-26417841 None:intergenic 50.0%
GGGCCTTTGAGCAAACATGA+GGG - chr5_1:26417941-26417960 Msa0726080:five_prime_UTR 50.0%
GGTCCCTCATGTTTGCTCAA+AGG + chr5_1:26417947-26417966 None:intergenic 50.0%
ACTTACGATCTCGACCGCCA+CGG + chr5_1:26413024-26413043 None:intergenic 55.0%
AAGAGGAGGAGCAGGCAATG+AGG - chr5_1:26414964-26414983 Msa0726080:intron 55.0%
AGAGGAGGAGCAGGCAATGA+GGG - chr5_1:26414965-26414984 Msa0726080:intron 55.0%
CAGGCAATGAGGGAAGCTCT+CGG - chr5_1:26414975-26414994 Msa0726080:intron 55.0%
AATGAGGGAAGCTCTCGGCT+TGG - chr5_1:26414980-26414999 Msa0726080:intron 55.0%
TGAGGACGACTAGCACGCTT+AGG + chr5_1:26415008-26415027 None:intergenic 55.0%
AAGCGTGCTAGTCGTCCTCA+AGG - chr5_1:26415008-26415027 Msa0726080:intron 55.0%
AAGGTCACGCTGAAGCAGCA+AGG - chr5_1:26415099-26415118 Msa0726080:intron 55.0%
AGGTCACGCTGAAGCAGCAA+GGG - chr5_1:26415100-26415119 Msa0726080:intron 55.0%
GCTGAAGCAGCAAGGGTTCA+AGG - chr5_1:26415107-26415126 Msa0726080:intron 55.0%
GCAGCAAGGGTTCAAGGTGT+TGG - chr5_1:26415113-26415132 Msa0726080:intron 55.0%
! TCCCCACCCACCAAAGTGTT+CGG - chr5_1:26416112-26416131 Msa0726080:intron 55.0%
! ACCCGAACACTTTGGTGGGT+GGG + chr5_1:26416117-26416136 None:intergenic 55.0%
TACCCGAACACTTTGGTGGG+TGG + chr5_1:26416118-26416137 None:intergenic 55.0%
GTGGTTTCAATGGAGGGGAG+TGG - chr5_1:26416689-26416708 Msa0726080:intron 55.0%
ATGGAGGGGAGTGGAAATGG+TGG - chr5_1:26416698-26416717 Msa0726080:intron 55.0%
CACCCTAGGGCCTTAGGTAT+AGG - chr5_1:26416751-26416770 Msa0726080:intron 55.0%
AACCAGGTTCTTCCCAAGGG+CGG + chr5_1:26417193-26417212 None:intergenic 55.0%
GAGGAACCAGGTTCTTCCCA+AGG + chr5_1:26417197-26417216 None:intergenic 55.0%
GGTCTTGCATACACCAGCTG+AGG - chr5_1:26417220-26417239 Msa0726080:intron 55.0%
TGAAAAGCGGCATTCCCGTG+AGG - chr5_1:26417349-26417368 Msa0726080:intron 55.0%
GTTAGGCCTACCATGGTCCT+AGG - chr5_1:26417750-26417769 Msa0726080:intron 55.0%
CTGCAATGTCCCTAGGACCA+TGG + chr5_1:26417763-26417782 None:intergenic 55.0%
CCCATGTCTGCAATGTCCCT+AGG + chr5_1:26417770-26417789 None:intergenic 55.0%
GGGGCCTTTGAGCAAACATG+AGG - chr5_1:26417940-26417959 Msa0726080:five_prime_UTR 55.0%
! CAGCTGGGTGGGTTTGCTTG+TGG - chr5_1:26415275-26415294 Msa0726080:intron 60.0%
GGGTGGGGAGATGGATACTG+TGG + chr5_1:26416101-26416120 None:intergenic 60.0%
! CACTTTGGTGGGTGGGGAGA+TGG + chr5_1:26416110-26416129 None:intergenic 60.0%
! CCCGAACACTTTGGTGGGTG+GGG + chr5_1:26416116-26416135 None:intergenic 60.0%
! CCCCACCCACCAAAGTGTTC+GGG - chr5_1:26416113-26416132 Msa0726080:intron 60.0%
TGTGCAGAGAACTCCGCCCT+TGG - chr5_1:26417177-26417196 Msa0726080:intron 60.0%
GTGCAGAGAACTCCGCCCTT+GGG - chr5_1:26417178-26417197 Msa0726080:intron 60.0%
CTCCGCCCTTGGGAAGAACC+TGG - chr5_1:26417188-26417207 Msa0726080:intron 65.0%
CCACGGACGCCACCTCGAGT+TGG + chr5_1:26413007-26413026 None:intergenic 70.0%
CCAACTCGAGGTGGCGTCCG+TGG - chr5_1:26413004-26413023 Msa0726080:three_prime_UTR 70.0%
ACTCGAGGTGGCGTCCGTGG+CGG - chr5_1:26413007-26413026 Msa0726080:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 26412861 26418041 26412861 ID=Msa0726080;Name=Msa0726080
chr5_1 mRNA 26412861 26418041 26412861 ID=Msa0726080-mRNA-1;Parent=Msa0726080;Name=Msa0726080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=134|1|1|1|1|1|4|569|229
chr5_1 exon 26412861 26413718 26412861 ID=Msa0726080-mRNA-1:exon:9418;Parent=Msa0726080-mRNA-1
chr5_1 exon 26415758 26416025 26415758 ID=Msa0726080-mRNA-1:exon:9417;Parent=Msa0726080-mRNA-1
chr5_1 exon 26417495 26417584 26417495 ID=Msa0726080-mRNA-1:exon:9416;Parent=Msa0726080-mRNA-1
chr5_1 exon 26417865 26418041 26417865 ID=Msa0726080-mRNA-1:exon:9415;Parent=Msa0726080-mRNA-1
chr5_1 five_prime_UTR 26417908 26418041 26417908 ID=Msa0726080-mRNA-1:five_prime_utr;Parent=Msa0726080-mRNA-1
chr5_1 CDS 26417865 26417907 26417865 ID=Msa0726080-mRNA-1:cds;Parent=Msa0726080-mRNA-1
chr5_1 CDS 26417495 26417584 26417495 ID=Msa0726080-mRNA-1:cds;Parent=Msa0726080-mRNA-1
chr5_1 CDS 26415758 26416025 26415758 ID=Msa0726080-mRNA-1:cds;Parent=Msa0726080-mRNA-1
chr5_1 CDS 26413430 26413718 26413430 ID=Msa0726080-mRNA-1:cds;Parent=Msa0726080-mRNA-1
chr5_1 three_prime_UTR 26412861 26413429 26412861 ID=Msa0726080-mRNA-1:three_prime_utr;Parent=Msa0726080-mRNA-1
Gene Sequence

>Msa0726080

ATGTATCATCCAACTCGAGGTGGCGTCCGTGGCGGTCGAGATCAATTCACTTGGGATGATGTAAAAGCTGATAAACACAGAGAGAATTATATAGGTCATAGTCTCAAGGCTCCTGTTGGTAGATGGCAGAAAGGGAAAGACCTTTTTTGGTATACCCGGGATAAAAAGTCCCAAAATGAAGAAATGGAGGCTGCAAAAGAAGAGATAAAAAGAATTAAGGAAGAGGAGGAGCAGGCAATGAGGGAAGCTCTCGGCTTGGCTCCTAAGCGTGCTAGTCGTCCTCAAGGTAACCGTCTTGATAAACATGAATTTTCAGAACTAGTAAAGAGAGGGTCTACAGCAGAAGACTTAGGTGAAGGTCACGCTGAAGCAGCAAGGGTTCAAGGTGTTGGTTTTGCAAGAGAACTCCGCCCTTGGGAAGAACCTGGTTCCTCAAAGGTCTTGCATACACCAGCTGAGGTAGAAAATGTATCTATGCCTAATCAATCACCAAGAAAGATTGAAGATGAATCTGAGGATGAAAGTAGAAAAAAGAGAAGACGGGAAGAAAGGAAGGAAGAGAAACGTGAAAAGCGGCATTCCCGTGAGGAAAGAAAGCAAGAGAAGCGTGAGAAACGGCATTCTCGTGATTCAGATGACAGGAAGAGACACAAGAAAGATAAAGAGAGGAGGAGGCATGATTCAGATTGA

Protein sequence

>Msa0726080

MYHPTRGGVRGGRDQFTWDDVKADKHRENYIGHSLKAPVGRWQKGKDLFWYTRDKKSQNEEMEAAKEEIKRIKEEEEQAMREALGLAPKRASRPQGNRLDKHEFSELVKRGSTAEDLGEGHAEAARVQGVGFARELRPWEEPGSSKVLHTPAEVENVSMPNQSPRKIEDESEDESRKKRRREERKEEKREKRHSREERKQEKREKRHSRDSDDRKRHKKDKERRRHDSD*