AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0086420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086420 MtrunA17_Chr1g0202691 96.791 187 6 0 57 243 4 190 1.87e-134 376
Msa0086420 MtrunA17_Chr1g0202671 97.674 43 1 0 15 57 1 43 6.77e-24 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086420 AT4G25670.2 54.054 185 81 3 60 243 1 182 8.12e-49 159
Msa0086420 AT4G25670.1 54.054 185 81 3 60 243 1 182 8.12e-49 159
Msa0086420 AT4G25690.2 51.795 195 73 5 60 243 1 185 2.09e-48 158
Msa0086420 AT4G25690.1 51.795 195 73 5 60 243 1 185 2.09e-48 158
Msa0086420 AT5G52550.1 50.000 184 67 6 75 243 181 354 2.68e-42 147
Msa0086420 AT5G52550.1 73.333 60 16 0 75 134 78 137 2.36e-17 80.5

Find 68 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTCCTGTCGTTTCTTTC+TGG 0.038238 1_2:-67146087 Msa0086420:CDS
TTTCCTCTCTCATATGTTAT+CGG 0.243854 1_2:-67147497 Msa0086420:five_prime_UTR
GTCTCCTGTCGTTTCTTTCT+GGG 0.246147 1_2:-67146086 Msa0086420:CDS
GATAACATGGCATGTAATAA+AGG 0.286451 1_2:-67145834 Msa0086420:CDS
AGATAGACCACTTGCCGTTT+TGG 0.291490 1_2:+67145454 None:intergenic
TAATAATCTTGATTTCTTCA+TGG 0.361966 1_2:-67145532 Msa0086420:CDS
TATGTCGTTATTAAGTTCAA+TGG 0.374544 1_2:-67145856 Msa0086420:intron
TTGTTGTAAGTTAGGAAGAA+TGG 0.385936 1_2:-67146155 Msa0086420:CDS
TGCAAGTGTTGTTGTAAGTT+AGG 0.387752 1_2:-67146163 Msa0086420:CDS
TCTCTCATATGTTATCGGTT+TGG 0.388640 1_2:-67147492 Msa0086420:five_prime_UTR
TGCTGCCATCATATCGGAAC+TGG 0.404529 1_2:-67145703 Msa0086420:CDS
AATAATCTTGATTTCTTCAT+GGG 0.406348 1_2:-67145531 Msa0086420:CDS
AAACGAGAAGTGATTGTTAG+TGG 0.410114 1_2:+67147370 None:intergenic
GCTTGCTTTCCTAATCTAGA+TGG 0.412460 1_2:-67145498 Msa0086420:CDS
AGAGGAAGAGAAAATGTAGT+TGG 0.425893 1_2:+67147401 None:intergenic
AGGATAGGATTCTCTTCTAA+TGG 0.433534 1_2:-67145302 None:intergenic
CCCATCCCGAAAAGGCCAAC+AGG 0.435447 1_2:+67146190 None:intergenic
TCTCTCTATGCCATTCCCTC+AGG 0.444085 1_2:-67147291 Msa0086420:intron
GGCAAGTGGTCTATCTCGTC+CGG 0.448307 1_2:-67145447 Msa0086420:CDS
TACTTCTGCTGCCATCATAT+CGG 0.450688 1_2:-67145709 Msa0086420:CDS
CTCAAATCACCACTCTCATC+AGG 0.457188 1_2:-67147334 Msa0086420:five_prime_UTR
TGTTGTAAGTTAGGAAGAAT+GGG 0.458980 1_2:-67146154 Msa0086420:CDS
AGACTCGGATGATTCATATA+AGG 0.459137 1_2:-67145583 Msa0086420:CDS
ATAACATGGCATGTAATAAA+GGG 0.468465 1_2:-67145833 Msa0086420:CDS
CATGTGCCACCATCTAGATT+AGG 0.473663 1_2:+67145489 None:intergenic
CACGAACCGCTTTACGAAGC+AGG 0.476420 1_2:-67145405 Msa0086420:CDS
GAAGCAGGTGAAAGATGAGT+TGG 0.480043 1_2:-67145784 Msa0086420:CDS
AGATCAACAGAGAATCTTGT+AGG 0.486420 1_2:+67145375 None:intergenic
GAGGAAGAGAAAATGTAGTT+GGG 0.489801 1_2:+67147402 None:intergenic
ATCTTGATTTCTTCATGGGT+GGG 0.489941 1_2:-67145527 Msa0086420:CDS
GAGAAGTGATTGTTAGTGGT+TGG 0.499250 1_2:+67147374 None:intergenic
GGAAGAATGGGGCCAAGGGA+TGG 0.500345 1_2:-67146142 Msa0086420:CDS
TGCACTCGCCCATCCCGAAA+AGG 0.502855 1_2:+67146182 None:intergenic
TGGTCCGTCACTTCCCAAAA+CGG 0.505701 1_2:-67145468 Msa0086420:CDS
TTGTTAGTGGTTGGATCTAG+AGG 0.515473 1_2:+67147383 None:intergenic
AATCTTGATTTCTTCATGGG+TGG 0.519569 1_2:-67145528 Msa0086420:CDS
CAGAGAATGCAGATGAGGAT+AGG 0.524026 1_2:-67145317 Msa0086420:CDS
AAGAGAAAATGTAGTTGGGT+AGG 0.532815 1_2:+67147406 None:intergenic
AACCGCTTTACGAAGCAGGA+TGG 0.534751 1_2:-67145401 Msa0086420:CDS
ACCGCTTTACGAAGCAGGAT+GGG 0.538753 1_2:-67145400 Msa0086420:CDS
GAGAAAGACAAAGAAGAAGC+AGG 0.540706 1_2:-67145799 Msa0086420:CDS
ATGAAACAAACCTGAGGGAA+TGG 0.542301 1_2:+67147281 None:intergenic
TAACAGTATTGCAGACCTGT+TGG 0.556464 1_2:-67146205 Msa0086420:intron
ATTATTATTATAATCATCCC+AGG 0.556888 1_2:+67145548 None:intergenic
GTTAGGAAGAATGGGGCCAA+GGG 0.557056 1_2:-67146146 Msa0086420:CDS
AGTTAGGAAGAATGGGGCCA+AGG 0.567048 1_2:-67146147 Msa0086420:CDS
ATTGCATAGTTCGTAAAATG+AGG 0.568760 1_2:-67146063 Msa0086420:intron
GCACTCTTAGATCCATCCCT+TGG 0.569872 1_2:+67146130 None:intergenic
CTAATCTAGATGGTGGCACA+TGG 0.572878 1_2:-67145488 Msa0086420:CDS
GCAAGTGGTCTATCTCGTCC+GGG 0.576300 1_2:-67145446 Msa0086420:CDS
TCCCATCCTGCTTCGTAAAG+CGG 0.587174 1_2:+67145399 None:intergenic
CATCTGCATTCTCTGCAATG+TGG 0.593120 1_2:+67145325 None:intergenic
ATAAGGTTGAGTGCAAGACC+TGG 0.599344 1_2:-67145566 Msa0086420:CDS
ACAACAAAGACTTGATGAAG+AGG 0.600172 1_2:-67145652 Msa0086420:CDS
ATTAAGTTCAATGGATAACA+TGG 0.608143 1_2:-67145847 Msa0086420:intron
TGCTTTCCTAATCTAGATGG+TGG 0.608683 1_2:-67145495 Msa0086420:CDS
TCACTTCCCAAAACGGCAAG+TGG 0.610829 1_2:-67145461 Msa0086420:CDS
CAATCCCAGAAAGAAACGAC+AGG 0.612234 1_2:+67146082 None:intergenic
CATTGCAGAGAATGCAGATG+AGG 0.616435 1_2:-67145322 Msa0086420:CDS
AAGTAGAACATGCAGAGCGA+CGG 0.623440 1_2:+67145611 None:intergenic
TGAAGAGGGTGCTGCAATTG+CGG 0.628142 1_2:-67145637 Msa0086420:CDS
TAAGGTTGAGTGCAAGACCT+GGG 0.633266 1_2:-67145565 Msa0086420:CDS
CAACAAAGACTTGATGAAGA+GGG 0.641834 1_2:-67145651 Msa0086420:CDS
TGTTCTACTTGATGAAGACT+CGG 0.648329 1_2:-67145598 Msa0086420:CDS
GTTGTAAGTTAGGAAGAATG+GGG 0.678758 1_2:-67146153 Msa0086420:CDS
AAACCGATAACATATGAGAG+AGG 0.679221 1_2:+67147494 None:intergenic
GATGAGAGTGGTGATTTGAG+AGG 0.706629 1_2:+67147337 None:intergenic
GAGACAAGACCTGATGAGAG+TGG 0.721166 1_2:+67147325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAAAAACAAAACAAAAA+AGG + chr1_2:67145584-67145603 None:intergenic 15.0%
!!! AATTTTGATTTGATTGTATT+TGG - chr1_2:67145613-67145632 Msa0086420:CDS 15.0%
!! AACATGTATATTATTGTAAT+AGG + chr1_2:67146258-67146277 None:intergenic 15.0%
!! TATTATTAGCATAATAGTTT+AGG - chr1_2:67146853-67146872 Msa0086420:intron 15.0%
!! ATTATTAGCATAATAGTTTA+GGG - chr1_2:67146854-67146873 Msa0086420:intron 15.0%
!! AGTTAAAAACAAAACAAAAA+AGG + chr1_2:67145584-67145603 None:intergenic 15.0%
!!! AATTTTGATTTGATTGTATT+TGG - chr1_2:67145613-67145632 Msa0086420:CDS 15.0%
!! AACATGTATATTATTGTAAT+AGG + chr1_2:67146258-67146277 None:intergenic 15.0%
!! TATTATTAGCATAATAGTTT+AGG - chr1_2:67146853-67146872 Msa0086420:intron 15.0%
!! ATTATTAGCATAATAGTTTA+GGG - chr1_2:67146854-67146873 Msa0086420:intron 15.0%
!!! ATCTTGTGATTTTTGTAATT+TGG - chr1_2:67145707-67145726 Msa0086420:CDS 20.0%
!!! TCTTGTGATTTTTGTAATTT+GGG - chr1_2:67145708-67145727 Msa0086420:CDS 20.0%
!!! GATGTGTTTTTTTATGAATT+AGG - chr1_2:67145761-67145780 Msa0086420:CDS 20.0%
!!! TCGATGTTTTTGTTATTTTT+AGG - chr1_2:67145801-67145820 Msa0086420:CDS 20.0%
!!! CGATGTTTTTGTTATTTTTA+GGG - chr1_2:67145802-67145821 Msa0086420:CDS 20.0%
!!! GTTCAATTTTGATATTTGTT+AGG - chr1_2:67146020-67146039 Msa0086420:intron 20.0%
!! CAATAATATACATGTTAAGT+AGG - chr1_2:67146262-67146281 Msa0086420:intron 20.0%
!! TACTCTTAAATATCATTTGA+TGG - chr1_2:67146394-67146413 Msa0086420:intron 20.0%
!!! TTTAAAGTAATTTTCGTTTG+TGG - chr1_2:67146422-67146441 Msa0086420:intron 20.0%
!!! ACATTAAAATTCACTTTTAG+AGG + chr1_2:67146470-67146489 None:intergenic 20.0%
!! AAGATATACAATTCATTTAC+AGG + chr1_2:67146499-67146518 None:intergenic 20.0%
!! TTATTAGCATAATAGTTTAG+GGG - chr1_2:67146855-67146874 Msa0086420:intron 20.0%
!! ATTATTATTATAATCATCCC+AGG + chr1_2:67147269-67147288 None:intergenic 20.0%
!! TAATAATCTTGATTTCTTCA+TGG - chr1_2:67147282-67147301 Msa0086420:intron 20.0%
!! AATAATCTTGATTTCTTCAT+GGG - chr1_2:67147283-67147302 Msa0086420:intron 20.0%
!!! ATCTTGTGATTTTTGTAATT+TGG - chr1_2:67145707-67145726 Msa0086420:CDS 20.0%
!!! TCTTGTGATTTTTGTAATTT+GGG - chr1_2:67145708-67145727 Msa0086420:CDS 20.0%
!!! GATGTGTTTTTTTATGAATT+AGG - chr1_2:67145761-67145780 Msa0086420:CDS 20.0%
!!! TCGATGTTTTTGTTATTTTT+AGG - chr1_2:67145801-67145820 Msa0086420:CDS 20.0%
!!! CGATGTTTTTGTTATTTTTA+GGG - chr1_2:67145802-67145821 Msa0086420:CDS 20.0%
!!! GTTCAATTTTGATATTTGTT+AGG - chr1_2:67146020-67146039 Msa0086420:intron 20.0%
!! CAATAATATACATGTTAAGT+AGG - chr1_2:67146262-67146281 Msa0086420:intron 20.0%
!! TACTCTTAAATATCATTTGA+TGG - chr1_2:67146394-67146413 Msa0086420:intron 20.0%
!!! TTTAAAGTAATTTTCGTTTG+TGG - chr1_2:67146422-67146441 Msa0086420:intron 20.0%
!!! ACATTAAAATTCACTTTTAG+AGG + chr1_2:67146470-67146489 None:intergenic 20.0%
!! AAGATATACAATTCATTTAC+AGG + chr1_2:67146499-67146518 None:intergenic 20.0%
!! TTATTAGCATAATAGTTTAG+GGG - chr1_2:67146855-67146874 Msa0086420:intron 20.0%
!! ATTATTATTATAATCATCCC+AGG + chr1_2:67147269-67147288 None:intergenic 20.0%
!! TAATAATCTTGATTTCTTCA+TGG - chr1_2:67147282-67147301 Msa0086420:intron 20.0%
!! AATAATCTTGATTTCTTCAT+GGG - chr1_2:67147283-67147302 Msa0086420:intron 20.0%
! ACAAAAAAGGCAAAATTTGA+AGG + chr1_2:67145571-67145590 None:intergenic 25.0%
!! CTTGTGATTTTTGTAATTTG+GGG - chr1_2:67145709-67145728 Msa0086420:CDS 25.0%
!!! GTGTTTTTTTATGAATTAGG+TGG - chr1_2:67145764-67145783 Msa0086420:CDS 25.0%
! TCAAGCTTACTGAATATAAT+TGG - chr1_2:67145901-67145920 Msa0086420:intron 25.0%
! ACTTAACATGAAATGTTAAC+AGG + chr1_2:67146089-67146108 None:intergenic 25.0%
! AATAATGCACAGATATATAG+AGG - chr1_2:67146295-67146314 Msa0086420:intron 25.0%
! TACAATAACAGACAATACTT+GGG + chr1_2:67146358-67146377 None:intergenic 25.0%
! TTACAATAACAGACAATACT+TGG + chr1_2:67146359-67146378 None:intergenic 25.0%
! GAAAATGTATACAACTCTAT+AGG - chr1_2:67146890-67146909 Msa0086420:intron 25.0%
! TATGTCGTTATTAAGTTCAA+TGG - chr1_2:67146958-67146977 Msa0086420:intron 25.0%
! ATTAAGTTCAATGGATAACA+TGG - chr1_2:67146967-67146986 Msa0086420:intron 25.0%
! ATAACATGGCATGTAATAAA+GGG - chr1_2:67146981-67147000 Msa0086420:intron 25.0%
! ACAAAAAAGGCAAAATTTGA+AGG + chr1_2:67145571-67145590 None:intergenic 25.0%
!! CTTGTGATTTTTGTAATTTG+GGG - chr1_2:67145709-67145728 Msa0086420:CDS 25.0%
!!! GTGTTTTTTTATGAATTAGG+TGG - chr1_2:67145764-67145783 Msa0086420:CDS 25.0%
! TCAAGCTTACTGAATATAAT+TGG - chr1_2:67145901-67145920 Msa0086420:intron 25.0%
! ACTTAACATGAAATGTTAAC+AGG + chr1_2:67146089-67146108 None:intergenic 25.0%
! AATAATGCACAGATATATAG+AGG - chr1_2:67146295-67146314 Msa0086420:intron 25.0%
! TACAATAACAGACAATACTT+GGG + chr1_2:67146358-67146377 None:intergenic 25.0%
! TTACAATAACAGACAATACT+TGG + chr1_2:67146359-67146378 None:intergenic 25.0%
! GAAAATGTATACAACTCTAT+AGG - chr1_2:67146890-67146909 Msa0086420:intron 25.0%
! TATGTCGTTATTAAGTTCAA+TGG - chr1_2:67146958-67146977 Msa0086420:intron 25.0%
! ATTAAGTTCAATGGATAACA+TGG - chr1_2:67146967-67146986 Msa0086420:intron 25.0%
! ATAACATGGCATGTAATAAA+GGG - chr1_2:67146981-67147000 Msa0086420:intron 25.0%
TTTCCTCTCTCATATGTTAT+CGG - chr1_2:67145317-67145336 Msa0086420:CDS 30.0%
GATTTGATTGTATTTGGATC+TGG - chr1_2:67145619-67145638 Msa0086420:CDS 30.0%
AATTCGAGTGATTCAATTTG+AGG - chr1_2:67145653-67145672 Msa0086420:CDS 30.0%
TTTGTTGCAAATAGATTTGC+AGG - chr1_2:67145830-67145849 Msa0086420:CDS 30.0%
AGATTTGCAGGAATGAAAAT+TGG - chr1_2:67145842-67145861 Msa0086420:CDS 30.0%
GATTTGCAGGAATGAAAATT+GGG - chr1_2:67145843-67145862 Msa0086420:CDS 30.0%
TTGTTGTAAGTTAGGAAGAA+TGG - chr1_2:67146659-67146678 Msa0086420:intron 30.0%
TGTTGTAAGTTAGGAAGAAT+GGG - chr1_2:67146660-67146679 Msa0086420:intron 30.0%
ATTGCATAGTTCGTAAAATG+AGG - chr1_2:67146751-67146770 Msa0086420:intron 30.0%
GATAACATGGCATGTAATAA+AGG - chr1_2:67146980-67146999 Msa0086420:intron 30.0%
AAGCTGAAAAGAAAAAGAGA+CGG - chr1_2:67147065-67147084 Msa0086420:intron 30.0%
TTTCCTCTCTCATATGTTAT+CGG - chr1_2:67145317-67145336 Msa0086420:CDS 30.0%
GATTTGATTGTATTTGGATC+TGG - chr1_2:67145619-67145638 Msa0086420:CDS 30.0%
AATTCGAGTGATTCAATTTG+AGG - chr1_2:67145653-67145672 Msa0086420:CDS 30.0%
TTTGTTGCAAATAGATTTGC+AGG - chr1_2:67145830-67145849 Msa0086420:CDS 30.0%
AGATTTGCAGGAATGAAAAT+TGG - chr1_2:67145842-67145861 Msa0086420:CDS 30.0%
GATTTGCAGGAATGAAAATT+GGG - chr1_2:67145843-67145862 Msa0086420:CDS 30.0%
TTGTTGTAAGTTAGGAAGAA+TGG - chr1_2:67146659-67146678 Msa0086420:intron 30.0%
TGTTGTAAGTTAGGAAGAAT+GGG - chr1_2:67146660-67146679 Msa0086420:intron 30.0%
ATTGCATAGTTCGTAAAATG+AGG - chr1_2:67146751-67146770 Msa0086420:intron 30.0%
GATAACATGGCATGTAATAA+AGG - chr1_2:67146980-67146999 Msa0086420:intron 30.0%
AAGCTGAAAAGAAAAAGAGA+CGG - chr1_2:67147065-67147084 Msa0086420:intron 30.0%
AAACCGATAACATATGAGAG+AGG + chr1_2:67145323-67145342 None:intergenic 35.0%
! TCTCTCATATGTTATCGGTT+TGG - chr1_2:67145322-67145341 Msa0086420:CDS 35.0%
AAGAGAAAATGTAGTTGGGT+AGG + chr1_2:67145411-67145430 None:intergenic 35.0%
GAGGAAGAGAAAATGTAGTT+GGG + chr1_2:67145415-67145434 None:intergenic 35.0%
AGAGGAAGAGAAAATGTAGT+TGG + chr1_2:67145416-67145435 None:intergenic 35.0%
AAACGAGAAGTGATTGTTAG+TGG + chr1_2:67145447-67145466 None:intergenic 35.0%
GATGAATGAAACAAACCTGA+GGG + chr1_2:67145541-67145560 None:intergenic 35.0%
TGATGAATGAAACAAACCTG+AGG + chr1_2:67145542-67145561 None:intergenic 35.0%
TGAATTAGGTGGATCTGATT+AGG - chr1_2:67145775-67145794 Msa0086420:CDS 35.0%
GAATTAGGTGGATCTGATTA+GGG - chr1_2:67145776-67145795 Msa0086420:CDS 35.0%
TTGTTAGGTGAGTTAGATGT+TGG - chr1_2:67146035-67146054 Msa0086420:intron 35.0%
! GTACTAGTCTATTGTACACT+TGG - chr1_2:67146107-67146126 Msa0086420:CDS 35.0%
TAGTCTATTGTACACTTGGT+TGG - chr1_2:67146111-67146130 Msa0086420:CDS 35.0%
! TAATTTTCGTTTGTGGTGAC+TGG - chr1_2:67146429-67146448 Msa0086420:intron 35.0%
TTAAGGGGAAAAACTCAAAG+TGG + chr1_2:67146532-67146551 None:intergenic 35.0%
! TGCAAGTGTTGTTGTAAGTT+AGG - chr1_2:67146651-67146670 Msa0086420:intron 35.0%
GTTGTAAGTTAGGAAGAATG+GGG - chr1_2:67146661-67146680 Msa0086420:intron 35.0%
! TAGGAGTTTGCTTGAAGAAT+AGG - chr1_2:67146909-67146928 Msa0086420:intron 35.0%
! AGGAGTTTGCTTGAAGAATA+GGG - chr1_2:67146910-67146929 Msa0086420:intron 35.0%
TGAAAAGAAAAAGAGACGGT+TGG - chr1_2:67147069-67147088 Msa0086420:intron 35.0%
! TTTTTCCAGTTCCGATATGA+TGG + chr1_2:67147119-67147138 None:intergenic 35.0%
ACAACAAAGACTTGATGAAG+AGG - chr1_2:67147162-67147181 Msa0086420:intron 35.0%
CAACAAAGACTTGATGAAGA+GGG - chr1_2:67147163-67147182 Msa0086420:intron 35.0%
TGTTCTACTTGATGAAGACT+CGG - chr1_2:67147216-67147235 Msa0086420:intron 35.0%
AGACTCGGATGATTCATATA+AGG - chr1_2:67147231-67147250 Msa0086420:intron 35.0%
AATCTTGATTTCTTCATGGG+TGG - chr1_2:67147286-67147305 Msa0086420:intron 35.0%
ATCTTGATTTCTTCATGGGT+GGG - chr1_2:67147287-67147306 Msa0086420:intron 35.0%
! TCGTGCACATTGTTTTCAAA+AGG + chr1_2:67147394-67147413 None:intergenic 35.0%
AGATCAACAGAGAATCTTGT+AGG + chr1_2:67147442-67147461 None:intergenic 35.0%
AAACCGATAACATATGAGAG+AGG + chr1_2:67145323-67145342 None:intergenic 35.0%
! TCTCTCATATGTTATCGGTT+TGG - chr1_2:67145322-67145341 Msa0086420:CDS 35.0%
AAGAGAAAATGTAGTTGGGT+AGG + chr1_2:67145411-67145430 None:intergenic 35.0%
GAGGAAGAGAAAATGTAGTT+GGG + chr1_2:67145415-67145434 None:intergenic 35.0%
AGAGGAAGAGAAAATGTAGT+TGG + chr1_2:67145416-67145435 None:intergenic 35.0%
AAACGAGAAGTGATTGTTAG+TGG + chr1_2:67145447-67145466 None:intergenic 35.0%
GATGAATGAAACAAACCTGA+GGG + chr1_2:67145541-67145560 None:intergenic 35.0%
TGATGAATGAAACAAACCTG+AGG + chr1_2:67145542-67145561 None:intergenic 35.0%
TGAATTAGGTGGATCTGATT+AGG - chr1_2:67145775-67145794 Msa0086420:CDS 35.0%
GAATTAGGTGGATCTGATTA+GGG - chr1_2:67145776-67145795 Msa0086420:CDS 35.0%
TTGTTAGGTGAGTTAGATGT+TGG - chr1_2:67146035-67146054 Msa0086420:intron 35.0%
! GTACTAGTCTATTGTACACT+TGG - chr1_2:67146107-67146126 Msa0086420:CDS 35.0%
TAGTCTATTGTACACTTGGT+TGG - chr1_2:67146111-67146130 Msa0086420:CDS 35.0%
! TAATTTTCGTTTGTGGTGAC+TGG - chr1_2:67146429-67146448 Msa0086420:intron 35.0%
TTAAGGGGAAAAACTCAAAG+TGG + chr1_2:67146532-67146551 None:intergenic 35.0%
! TGCAAGTGTTGTTGTAAGTT+AGG - chr1_2:67146651-67146670 Msa0086420:intron 35.0%
GTTGTAAGTTAGGAAGAATG+GGG - chr1_2:67146661-67146680 Msa0086420:intron 35.0%
! TAGGAGTTTGCTTGAAGAAT+AGG - chr1_2:67146909-67146928 Msa0086420:intron 35.0%
! AGGAGTTTGCTTGAAGAATA+GGG - chr1_2:67146910-67146929 Msa0086420:intron 35.0%
TGAAAAGAAAAAGAGACGGT+TGG - chr1_2:67147069-67147088 Msa0086420:intron 35.0%
! TTTTTCCAGTTCCGATATGA+TGG + chr1_2:67147119-67147138 None:intergenic 35.0%
ACAACAAAGACTTGATGAAG+AGG - chr1_2:67147162-67147181 Msa0086420:intron 35.0%
CAACAAAGACTTGATGAAGA+GGG - chr1_2:67147163-67147182 Msa0086420:intron 35.0%
TGTTCTACTTGATGAAGACT+CGG - chr1_2:67147216-67147235 Msa0086420:intron 35.0%
AGACTCGGATGATTCATATA+AGG - chr1_2:67147231-67147250 Msa0086420:intron 35.0%
AATCTTGATTTCTTCATGGG+TGG - chr1_2:67147286-67147305 Msa0086420:intron 35.0%
ATCTTGATTTCTTCATGGGT+GGG - chr1_2:67147287-67147306 Msa0086420:intron 35.0%
! TCGTGCACATTGTTTTCAAA+AGG + chr1_2:67147394-67147413 None:intergenic 35.0%
AGATCAACAGAGAATCTTGT+AGG + chr1_2:67147442-67147461 None:intergenic 35.0%
TTGTTAGTGGTTGGATCTAG+AGG + chr1_2:67145434-67145453 None:intergenic 40.0%
GAGAAGTGATTGTTAGTGGT+TGG + chr1_2:67145443-67145462 None:intergenic 40.0%
GCATAGAGAGAGAGAGAAAT+TGG + chr1_2:67145514-67145533 None:intergenic 40.0%
ATGAAACAAACCTGAGGGAA+TGG + chr1_2:67145536-67145555 None:intergenic 40.0%
! TACACTTGGTTGGTTAAACC+AGG - chr1_2:67146121-67146140 Msa0086420:CDS 40.0%
ATGAACATGTCAGATCAACC+TGG + chr1_2:67146142-67146161 None:intergenic 40.0%
! TTTTCCCCTTAAACTGCAGT+TGG - chr1_2:67146540-67146559 Msa0086420:intron 40.0%
TTTCCCCTTAAACTGCAGTT+GGG - chr1_2:67146541-67146560 Msa0086420:intron 40.0%
TAACAGTATTGCAGACCTGT+TGG - chr1_2:67146609-67146628 Msa0086420:intron 40.0%
GAGAAAGACAAAGAAGAAGC+AGG - chr1_2:67147015-67147034 Msa0086420:intron 40.0%
TACTTCTGCTGCCATCATAT+CGG - chr1_2:67147105-67147124 Msa0086420:intron 40.0%
GCTTGCTTTCCTAATCTAGA+TGG - chr1_2:67147316-67147335 Msa0086420:five_prime_UTR 40.0%
TGCTTTCCTAATCTAGATGG+TGG - chr1_2:67147319-67147338 Msa0086420:five_prime_UTR 40.0%
! CACATTGTTTTCAAAAGGCC+CGG + chr1_2:67147389-67147408 None:intergenic 40.0%
TTGTTAGTGGTTGGATCTAG+AGG + chr1_2:67145434-67145453 None:intergenic 40.0%
GAGAAGTGATTGTTAGTGGT+TGG + chr1_2:67145443-67145462 None:intergenic 40.0%
GCATAGAGAGAGAGAGAAAT+TGG + chr1_2:67145514-67145533 None:intergenic 40.0%
ATGAAACAAACCTGAGGGAA+TGG + chr1_2:67145536-67145555 None:intergenic 40.0%
! TACACTTGGTTGGTTAAACC+AGG - chr1_2:67146121-67146140 Msa0086420:CDS 40.0%
ATGAACATGTCAGATCAACC+TGG + chr1_2:67146142-67146161 None:intergenic 40.0%
! TTTTCCCCTTAAACTGCAGT+TGG - chr1_2:67146540-67146559 Msa0086420:intron 40.0%
TTTCCCCTTAAACTGCAGTT+GGG - chr1_2:67146541-67146560 Msa0086420:intron 40.0%
TAACAGTATTGCAGACCTGT+TGG - chr1_2:67146609-67146628 Msa0086420:intron 40.0%
GAGAAAGACAAAGAAGAAGC+AGG - chr1_2:67147015-67147034 Msa0086420:intron 40.0%
TACTTCTGCTGCCATCATAT+CGG - chr1_2:67147105-67147124 Msa0086420:intron 40.0%
GCTTGCTTTCCTAATCTAGA+TGG - chr1_2:67147316-67147335 Msa0086420:five_prime_UTR 40.0%
TGCTTTCCTAATCTAGATGG+TGG - chr1_2:67147319-67147338 Msa0086420:five_prime_UTR 40.0%
! CACATTGTTTTCAAAAGGCC+CGG + chr1_2:67147389-67147408 None:intergenic 40.0%
GATGAGAGTGGTGATTTGAG+AGG + chr1_2:67145480-67145499 None:intergenic 45.0%
CTCAAATCACCACTCTCATC+AGG - chr1_2:67145480-67145499 Msa0086420:CDS 45.0%
GTAATAGGATCTGCTTGCAG+TGG + chr1_2:67146243-67146262 None:intergenic 45.0%
CTTCCCAACTGCAGTTTAAG+GGG + chr1_2:67146547-67146566 None:intergenic 45.0%
CCTTCCCAACTGCAGTTTAA+GGG + chr1_2:67146548-67146567 None:intergenic 45.0%
CCTTAAACTGCAGTTGGGAA+GGG - chr1_2:67146546-67146565 Msa0086420:intron 45.0%
! TGTCTCCTGTCGTTTCTTTC+TGG - chr1_2:67146727-67146746 Msa0086420:intron 45.0%
! GTCTCCTGTCGTTTCTTTCT+GGG - chr1_2:67146728-67146747 Msa0086420:intron 45.0%
CAATCCCAGAAAGAAACGAC+AGG + chr1_2:67146735-67146754 None:intergenic 45.0%
GTATTCCTACAGACCTGAGT+GGG - chr1_2:67146773-67146792 Msa0086420:intron 45.0%
GAAGCAGGTGAAAGATGAGT+TGG - chr1_2:67147030-67147049 Msa0086420:intron 45.0%
AAGTAGAACATGCAGAGCGA+CGG + chr1_2:67147206-67147225 None:intergenic 45.0%
ATAAGGTTGAGTGCAAGACC+TGG - chr1_2:67147248-67147267 Msa0086420:intron 45.0%
TAAGGTTGAGTGCAAGACCT+GGG - chr1_2:67147249-67147268 Msa0086420:intron 45.0%
CATGTGCCACCATCTAGATT+AGG + chr1_2:67147328-67147347 None:intergenic 45.0%
! CTAATCTAGATGGTGGCACA+TGG - chr1_2:67147326-67147345 Msa0086420:five_prime_UTR 45.0%
!!! GATAGACCACTTGCCGTTTT+GGG + chr1_2:67147362-67147381 None:intergenic 45.0%
!! AGATAGACCACTTGCCGTTT+TGG + chr1_2:67147363-67147382 None:intergenic 45.0%
CATCTGCATTCTCTGCAATG+TGG + chr1_2:67147492-67147511 None:intergenic 45.0%
CATTGCAGAGAATGCAGATG+AGG - chr1_2:67147492-67147511 Msa0086420:five_prime_UTR 45.0%
CAGAGAATGCAGATGAGGAT+AGG - chr1_2:67147497-67147516 Msa0086420:five_prime_UTR 45.0%
GATGAGAGTGGTGATTTGAG+AGG + chr1_2:67145480-67145499 None:intergenic 45.0%
CTCAAATCACCACTCTCATC+AGG - chr1_2:67145480-67145499 Msa0086420:CDS 45.0%
GTAATAGGATCTGCTTGCAG+TGG + chr1_2:67146243-67146262 None:intergenic 45.0%
CTTCCCAACTGCAGTTTAAG+GGG + chr1_2:67146547-67146566 None:intergenic 45.0%
CCTTCCCAACTGCAGTTTAA+GGG + chr1_2:67146548-67146567 None:intergenic 45.0%
CCTTAAACTGCAGTTGGGAA+GGG - chr1_2:67146546-67146565 Msa0086420:intron 45.0%
! TGTCTCCTGTCGTTTCTTTC+TGG - chr1_2:67146727-67146746 Msa0086420:intron 45.0%
! GTCTCCTGTCGTTTCTTTCT+GGG - chr1_2:67146728-67146747 Msa0086420:intron 45.0%
CAATCCCAGAAAGAAACGAC+AGG + chr1_2:67146735-67146754 None:intergenic 45.0%
GTATTCCTACAGACCTGAGT+GGG - chr1_2:67146773-67146792 Msa0086420:intron 45.0%
GAAGCAGGTGAAAGATGAGT+TGG - chr1_2:67147030-67147049 Msa0086420:intron 45.0%
AAGTAGAACATGCAGAGCGA+CGG + chr1_2:67147206-67147225 None:intergenic 45.0%
ATAAGGTTGAGTGCAAGACC+TGG - chr1_2:67147248-67147267 Msa0086420:intron 45.0%
TAAGGTTGAGTGCAAGACCT+GGG - chr1_2:67147249-67147268 Msa0086420:intron 45.0%
CATGTGCCACCATCTAGATT+AGG + chr1_2:67147328-67147347 None:intergenic 45.0%
! CTAATCTAGATGGTGGCACA+TGG - chr1_2:67147326-67147345 Msa0086420:five_prime_UTR 45.0%
!!! GATAGACCACTTGCCGTTTT+GGG + chr1_2:67147362-67147381 None:intergenic 45.0%
!! AGATAGACCACTTGCCGTTT+TGG + chr1_2:67147363-67147382 None:intergenic 45.0%
CATCTGCATTCTCTGCAATG+TGG + chr1_2:67147492-67147511 None:intergenic 45.0%
CATTGCAGAGAATGCAGATG+AGG - chr1_2:67147492-67147511 Msa0086420:five_prime_UTR 45.0%
CAGAGAATGCAGATGAGGAT+AGG - chr1_2:67147497-67147516 Msa0086420:five_prime_UTR 45.0%
!!! AATTTGAAAATTTTATATTT+TGG - chr1_2:67145677-67145696 Msa0086420:CDS 5.0%
!!! ATTTGAAAATTTTATATTTT+GGG - chr1_2:67145678-67145697 Msa0086420:CDS 5.0%
!!! AATTTGAAAATTTTATATTT+TGG - chr1_2:67145677-67145696 Msa0086420:CDS 5.0%
!!! ATTTGAAAATTTTATATTTT+GGG - chr1_2:67145678-67145697 Msa0086420:CDS 5.0%
GAGACAAGACCTGATGAGAG+TGG + chr1_2:67145492-67145511 None:intergenic 50.0%
TCTCTCTATGCCATTCCCTC+AGG - chr1_2:67145523-67145542 Msa0086420:CDS 50.0%
CCCTTAAACTGCAGTTGGGA+AGG - chr1_2:67146545-67146564 Msa0086420:intron 50.0%
CCCTTCCCAACTGCAGTTTA+AGG + chr1_2:67146549-67146568 None:intergenic 50.0%
!!! TGGAGTCGGAGTGTTGGTTT+TGG - chr1_2:67146574-67146593 Msa0086420:intron 50.0%
!!! TGCAGACCTGTTGGCCTTTT+CGG - chr1_2:67146618-67146637 Msa0086420:intron 50.0%
AGTTAGGAAGAATGGGGCCA+AGG - chr1_2:67146667-67146686 Msa0086420:intron 50.0%
GTTAGGAAGAATGGGGCCAA+GGG - chr1_2:67146668-67146687 Msa0086420:intron 50.0%
GCACTCTTAGATCCATCCCT+TGG + chr1_2:67146687-67146706 None:intergenic 50.0%
GGTATTCCTACAGACCTGAG+TGG - chr1_2:67146772-67146791 Msa0086420:intron 50.0%
TGCTGCCATCATATCGGAAC+TGG - chr1_2:67147111-67147130 Msa0086420:intron 50.0%
!! TGAAGAGGGTGCTGCAATTG+CGG - chr1_2:67147177-67147196 Msa0086420:intron 50.0%
TGGTCCGTCACTTCCCAAAA+CGG - chr1_2:67147346-67147365 Msa0086420:five_prime_UTR 50.0%
!!! CTTGCCGTTTTGGGAAGTGA+CGG + chr1_2:67147353-67147372 None:intergenic 50.0%
TCACTTCCCAAAACGGCAAG+TGG - chr1_2:67147353-67147372 Msa0086420:five_prime_UTR 50.0%
AACCGCTTTACGAAGCAGGA+TGG - chr1_2:67147413-67147432 Msa0086420:five_prime_UTR 50.0%
ACCGCTTTACGAAGCAGGAT+GGG - chr1_2:67147414-67147433 Msa0086420:five_prime_UTR 50.0%
TCCCATCCTGCTTCGTAAAG+CGG + chr1_2:67147418-67147437 None:intergenic 50.0%
GAGACAAGACCTGATGAGAG+TGG + chr1_2:67145492-67145511 None:intergenic 50.0%
TCTCTCTATGCCATTCCCTC+AGG - chr1_2:67145523-67145542 Msa0086420:CDS 50.0%
CCCTTAAACTGCAGTTGGGA+AGG - chr1_2:67146545-67146564 Msa0086420:intron 50.0%
CCCTTCCCAACTGCAGTTTA+AGG + chr1_2:67146549-67146568 None:intergenic 50.0%
!!! TGGAGTCGGAGTGTTGGTTT+TGG - chr1_2:67146574-67146593 Msa0086420:intron 50.0%
!!! TGCAGACCTGTTGGCCTTTT+CGG - chr1_2:67146618-67146637 Msa0086420:intron 50.0%
AGTTAGGAAGAATGGGGCCA+AGG - chr1_2:67146667-67146686 Msa0086420:intron 50.0%
GTTAGGAAGAATGGGGCCAA+GGG - chr1_2:67146668-67146687 Msa0086420:intron 50.0%
GCACTCTTAGATCCATCCCT+TGG + chr1_2:67146687-67146706 None:intergenic 50.0%
GGTATTCCTACAGACCTGAG+TGG - chr1_2:67146772-67146791 Msa0086420:intron 50.0%
TGCTGCCATCATATCGGAAC+TGG - chr1_2:67147111-67147130 Msa0086420:intron 50.0%
!! TGAAGAGGGTGCTGCAATTG+CGG - chr1_2:67147177-67147196 Msa0086420:intron 50.0%
TGGTCCGTCACTTCCCAAAA+CGG - chr1_2:67147346-67147365 Msa0086420:five_prime_UTR 50.0%
!!! CTTGCCGTTTTGGGAAGTGA+CGG + chr1_2:67147353-67147372 None:intergenic 50.0%
TCACTTCCCAAAACGGCAAG+TGG - chr1_2:67147353-67147372 Msa0086420:five_prime_UTR 50.0%
AACCGCTTTACGAAGCAGGA+TGG - chr1_2:67147413-67147432 Msa0086420:five_prime_UTR 50.0%
ACCGCTTTACGAAGCAGGAT+GGG - chr1_2:67147414-67147433 Msa0086420:five_prime_UTR 50.0%
TCCCATCCTGCTTCGTAAAG+CGG + chr1_2:67147418-67147437 None:intergenic 50.0%
! TGCAGTTGGGAAGGGTGTAC+TGG - chr1_2:67146554-67146573 Msa0086420:intron 55.0%
! TGGGAAGGGTGTACTGGAGT+CGG - chr1_2:67146560-67146579 Msa0086420:intron 55.0%
GTGTACTGGAGTCGGAGTGT+TGG - chr1_2:67146568-67146587 Msa0086420:intron 55.0%
!!! GCAGACCTGTTGGCCTTTTC+GGG - chr1_2:67146619-67146638 Msa0086420:intron 55.0%
!!! ACCTGTTGGCCTTTTCGGGA+TGG - chr1_2:67146623-67146642 Msa0086420:intron 55.0%
!!! CCTGTTGGCCTTTTCGGGAT+GGG - chr1_2:67146624-67146643 Msa0086420:intron 55.0%
CTACACCCACTCAGGTCTGT+AGG + chr1_2:67146781-67146800 None:intergenic 55.0%
ACAGACCTGAGTGGGTGTAG+TGG - chr1_2:67146781-67146800 Msa0086420:intron 55.0%
ACCTGAGTGGGTGTAGTGGT+TGG - chr1_2:67146785-67146804 Msa0086420:intron 55.0%
ACCAACCACTACACCCACTC+AGG + chr1_2:67146789-67146808 None:intergenic 55.0%
GGCAAGTGGTCTATCTCGTC+CGG - chr1_2:67147367-67147386 Msa0086420:five_prime_UTR 55.0%
GCAAGTGGTCTATCTCGTCC+GGG - chr1_2:67147368-67147387 Msa0086420:five_prime_UTR 55.0%
CACGAACCGCTTTACGAAGC+AGG - chr1_2:67147409-67147428 Msa0086420:five_prime_UTR 55.0%
! TGCAGTTGGGAAGGGTGTAC+TGG - chr1_2:67146554-67146573 Msa0086420:intron 55.0%
! TGGGAAGGGTGTACTGGAGT+CGG - chr1_2:67146560-67146579 Msa0086420:intron 55.0%
GTGTACTGGAGTCGGAGTGT+TGG - chr1_2:67146568-67146587 Msa0086420:intron 55.0%
!!! GCAGACCTGTTGGCCTTTTC+GGG - chr1_2:67146619-67146638 Msa0086420:intron 55.0%
!!! ACCTGTTGGCCTTTTCGGGA+TGG - chr1_2:67146623-67146642 Msa0086420:intron 55.0%
!!! CCTGTTGGCCTTTTCGGGAT+GGG - chr1_2:67146624-67146643 Msa0086420:intron 55.0%
CTACACCCACTCAGGTCTGT+AGG + chr1_2:67146781-67146800 None:intergenic 55.0%
ACAGACCTGAGTGGGTGTAG+TGG - chr1_2:67146781-67146800 Msa0086420:intron 55.0%
ACCTGAGTGGGTGTAGTGGT+TGG - chr1_2:67146785-67146804 Msa0086420:intron 55.0%
ACCAACCACTACACCCACTC+AGG + chr1_2:67146789-67146808 None:intergenic 55.0%
GGCAAGTGGTCTATCTCGTC+CGG - chr1_2:67147367-67147386 Msa0086420:five_prime_UTR 55.0%
GCAAGTGGTCTATCTCGTCC+GGG - chr1_2:67147368-67147387 Msa0086420:five_prime_UTR 55.0%
CACGAACCGCTTTACGAAGC+AGG - chr1_2:67147409-67147428 Msa0086420:five_prime_UTR 55.0%
CCCATCCCGAAAAGGCCAAC+AGG + chr1_2:67146627-67146646 None:intergenic 60.0%
TGCACTCGCCCATCCCGAAA+AGG + chr1_2:67146635-67146654 None:intergenic 60.0%
GGAAGAATGGGGCCAAGGGA+TGG - chr1_2:67146672-67146691 Msa0086420:intron 60.0%
CCCATCCCGAAAAGGCCAAC+AGG + chr1_2:67146627-67146646 None:intergenic 60.0%
TGCACTCGCCCATCCCGAAA+AGG + chr1_2:67146635-67146654 None:intergenic 60.0%
GGAAGAATGGGGCCAAGGGA+TGG - chr1_2:67146672-67146691 Msa0086420:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 67145305 67147531 67145305 ID=Msa0086420;Name=Msa0086420
chr1_2 mRNA 67145305 67147531 67145305 ID=Msa0086420-mRNA-1;Parent=Msa0086420;Name=Msa0086420-mRNA-1;_AED=0.22;_eAED=0.47;_QI=225|0|0.33|1|0.5|0.66|3|0|243
chr1_2 exon 67145305 67145863 67145305 ID=Msa0086420-mRNA-1:exon:22743;Parent=Msa0086420-mRNA-1
chr1_2 exon 67146064 67146221 67146064 ID=Msa0086420-mRNA-1:exon:22742;Parent=Msa0086420-mRNA-1
chr1_2 exon 67147292 67147531 67147292 ID=Msa0086420-mRNA-1:exon:22741;Parent=Msa0086420-mRNA-1
chr1_2 five_prime_UTR 67147307 67147531 67147307 ID=Msa0086420-mRNA-1:five_prime_utr;Parent=Msa0086420-mRNA-1
chr1_2 CDS 67147292 67147306 67147292 ID=Msa0086420-mRNA-1:cds;Parent=Msa0086420-mRNA-1
chr1_2 CDS 67146064 67146221 67146064 ID=Msa0086420-mRNA-1:cds;Parent=Msa0086420-mRNA-1
chr1_2 CDS 67145305 67145863 67145305 ID=Msa0086420-mRNA-1:cds;Parent=Msa0086420-mRNA-1
Gene Sequence

>Msa0086420

ATGCCATTCCCTCAGTATTGCAGACCTGTTGGCCTTTTCGGGATGGGCGAGTGCAAGTGTTGTTGTAAGTTAGGAAGAATGGGGCCAAGGGATGGATCTAAGAGTGCTTATGAATTTTCTTTGATGTTGTCTCCTGTCGTTTCTTTCTGGGATTGCATAGTTCGTAAAATGAGTTCAATGGATAACATGGCATGTAATAAAGGGCAACAACATGTGAGAAAGACAAAGAAGAAGCAGGTGAAAGATGAGTTGGATCGTCTCAAACAAGCTGAAAAGAAAAAGAGACGGTTGGAAAAAGCTCTAGCTACTTCTGCTGCCATCATATCGGAACTGGAAAAAAAGAAACAGAAAAAGAAAGAAGAACAACAAAGACTTGATGAAGAGGGTGCTGCAATTGCGGAAGCCGTCGCTCTGCATGTTCTACTTGATGAAGACTCGGATGATTCATATAAGGTTGAGTGCAAGACCTGGGATGATTATAATAATAATCTTGATTTCTTCATGGGTGGGAAAAGAGCTTGCTTTCCTAATCTAGATGGTGGCACATGGTCCGTCACTTCCCAAAACGGCAAGTGGTCTATCTCGTCCGGGCCTTTTGAAAACAATGTGCACGAACCGCTTTACGAAGCAGGATGGGATCCTACAAGATTCTCTGTTGATCTTATAGCAGCACAAGCAGTTAGATCACTCCACATTGCAGAGAATGCAGATGAGGATAGGATTCTCTTCTAA

Protein sequence

>Msa0086420

MPFPQYCRPVGLFGMGECKCCCKLGRMGPRDGSKSAYEFSLMLSPVVSFWDCIVRKMSSMDNMACNKGQQHVRKTKKKQVKDELDRLKQAEKKKRRLEKALATSAAIISELEKKKQKKKEEQQRLDEEGAAIAEAVALHVLLDEDSDDSYKVECKTWDDYNNNLDFFMGGKRACFPNLDGGTWSVTSQNGKWSISSGPFENNVHEPLYEAGWDPTRFSVDLIAAQAVRSLHIAENADEDRILF*