AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0489660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0489660 MtrunA17_Chr3g0079781 96.348 575 20 1 1 575 1 574 0.0 1110
Msa0489660 MtrunA17_Chr8g0369251 45.522 268 131 6 311 575 94 349 7.79e-56 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0489660 AT4G26455.1 33.526 519 225 21 46 550 52 464 1.68e-51 184
Msa0489660 AT5G56210.1 33.750 480 258 19 75 544 53 482 1.79e-40 154
Msa0489660 AT3G13360.1 29.273 550 265 19 37 575 23 459 1.48e-31 128
Msa0489660 AT3G13360.2 29.273 550 265 19 37 575 82 518 1.60e-31 129

Find 150 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATCGAAACCCTAGAATT+TGG 0.121917 3_4:-10281394 None:intergenic
GCACAACAACCCCAGAATTT+TGG 0.122979 3_4:-10285060 None:intergenic
TTTCAATTTGATGGCAATTT+TGG 0.164092 3_4:+10281717 Msa0489660:CDS
TATCAATCTCCCTGAATTTC+TGG 0.176921 3_4:-10284361 None:intergenic
AAGGGTTCTGATGAGAAATT+AGG 0.189886 3_4:+10281693 Msa0489660:CDS
AAATTACAGTGAATTATTTA+AGG 0.190432 3_4:-10285254 None:intergenic
TGGATTCATTTATTATTAAA+AGG 0.208145 3_4:+10281424 Msa0489660:five_prime_UTR
TGATGTTAATCTTGTTCTTT+TGG 0.219585 3_4:+10285017 Msa0489660:CDS
AATTCACTGTAATTTGAGTT+TGG 0.245002 3_4:+10285262 Msa0489660:three_prime_UTR
TTGAAATTGAAATATGGATT+TGG 0.250648 3_4:+10281620 Msa0489660:exon
TCACAGTTATCCCAAAATTC+TGG 0.258625 3_4:+10285049 Msa0489660:CDS
GAAACAACATGTAAACCTTT+TGG 0.279724 3_4:+10284550 Msa0489660:CDS
TTGCAGAAGTCCAGAAATTC+AGG 0.282661 3_4:+10284351 Msa0489660:intron
AGAAGGAATTGTTGCTGAAT+TGG 0.284953 3_4:+10281755 Msa0489660:CDS
GTGTTGGCAGATTCTTCTTT+AGG 0.285615 3_4:-10284662 None:intergenic
AGATTTACAATTTACATTAT+TGG 0.289460 3_4:+10284799 Msa0489660:CDS
TGAAGAAATGGAAGAGAATT+AGG 0.289879 3_4:+10281829 Msa0489660:CDS
GGGTTTCGATTTCCAATTCA+TGG 0.292858 3_4:+10281404 Msa0489660:five_prime_UTR
CCATCAAAATCCCAAATTCT+AGG 0.296085 3_4:+10281383 Msa0489660:five_prime_UTR
AAGGAGTTGAAATTGAAATA+TGG 0.313980 3_4:+10281614 Msa0489660:exon
TTCTGATGGGCATGCGATCC+GGG 0.314140 3_4:+10282010 Msa0489660:CDS
ATTCACTGTAATTTGAGTTT+GGG 0.317485 3_4:+10285263 Msa0489660:three_prime_UTR
GAATTAGGAGGAATGTTGTT+AGG 0.319758 3_4:+10281844 Msa0489660:CDS
AACCTTCTTCAAGTGCTTCC+TGG 0.322107 3_4:-10282607 None:intergenic
GATGGGTCTTCGAGCGCGTT+TGG 0.325703 3_4:+10281975 Msa0489660:CDS
TGAAATTGAAATATGGATTT+GGG 0.329850 3_4:+10281621 Msa0489660:exon
GCTGGTTATGGCAACGAAAA+TGG 0.341150 3_4:+10282452 Msa0489660:CDS
AAATCGAAACCCTAGAATTT+GGG 0.347830 3_4:-10281393 None:intergenic
ACCCCTCTTCAAAACCTTAC+CGG 0.347847 3_4:-10281892 None:intergenic
CACTTAACTGAGTCGTCTTC+TGG 0.349970 3_4:-10284398 None:intergenic
GGTATCACTGCTGTTGATCT+TGG 0.353511 3_4:+10284437 Msa0489660:CDS
ATCCTTTGATCGAGTCTATC+AGG 0.353744 3_4:+10282570 Msa0489660:CDS
TTTCTGATGGGCATGCGATC+CGG 0.358556 3_4:+10282009 Msa0489660:CDS
TAATAAATGAATCCATGAAT+TGG 0.360380 3_4:-10281416 None:intergenic
GGAACTTGAAGCAGCTTGAT+TGG 0.364131 3_4:-10284504 None:intergenic
CGAGTCTATCAGGAGCCTTC+AGG 0.370738 3_4:+10282580 Msa0489660:CDS
AAGAGGGGTTTATCTGGGTC+TGG 0.371412 3_4:+10281906 Msa0489660:CDS
GCAACAATTCCTTCTTGATC+TGG 0.373469 3_4:-10281747 None:intergenic
GAAGGAATTGTTGCTGAATT+GGG 0.375674 3_4:+10281756 Msa0489660:CDS
GAAGTGAATCACGATGAAAA+TGG 0.378652 3_4:+10281666 Msa0489660:CDS
AAATTAGGGTTTCAATTTGA+TGG 0.382765 3_4:+10281708 Msa0489660:CDS
TGATGCAGAACTTGAAGGTT+GGG 0.388770 3_4:+10284774 Msa0489660:CDS
ATGGGTCTTCGAGCGCGTTT+GGG 0.392314 3_4:+10281976 Msa0489660:CDS
GGAAAATTCTATTTCCAGCT+TGG 0.397790 3_4:+10282286 Msa0489660:CDS
TGCTTGCTACGAAGGATTCT+AGG 0.403279 3_4:+10284600 Msa0489660:CDS
AAGGGGTTGGATTGAAGAAA+TGG 0.411286 3_4:+10281817 Msa0489660:CDS
CACAGTTATCCCAAAATTCT+GGG 0.411552 3_4:+10285050 Msa0489660:CDS
TCTAGATATGCAGTTGGATC+TGG 0.415064 3_4:+10282047 Msa0489660:CDS
TCAAGCTGCTTCAAGTTCCT+TGG 0.417796 3_4:+10284508 Msa0489660:CDS
TTTAGTGAACTCGGCTCAAA+AGG 0.417990 3_4:+10282193 Msa0489660:CDS
AAGGAAGATGAAGCTGGTTA+TGG 0.424672 3_4:+10282440 Msa0489660:CDS
TTTAGTACAGTTACTAGTAA+TGG 0.427692 3_4:+10282344 Msa0489660:CDS
AGGGTTCTGATGAGAAATTA+GGG 0.427817 3_4:+10281694 Msa0489660:CDS
CAGGAGCCTTCAGGCTGTCC+AGG 0.431092 3_4:+10282589 Msa0489660:CDS
GATCATAGATGCGGAGAGTA+AGG 0.438137 3_4:+10284868 Msa0489660:CDS
GCTGCAGAAAAGAGTATGTA+AGG 0.439143 3_4:+10284967 Msa0489660:CDS
CAGATTCGAGATCCAACTAT+AGG 0.441179 3_4:+10282312 Msa0489660:CDS
AATTAGGAGGAATGTTGTTA+GGG 0.443869 3_4:+10281845 Msa0489660:CDS
TCTAAAGGGGCACCAAGAAA+AGG 0.446044 3_4:+10281798 Msa0489660:CDS
CTAAAGGGGCACCAAGAAAA+GGG 0.449350 3_4:+10281799 Msa0489660:CDS
CCTCCAGCTTGCTTTCCAAA+AGG 0.451050 3_4:-10284565 None:intergenic
ATAACCAGCTTCATCTTCCT+TGG 0.452817 3_4:-10282438 None:intergenic
CATCAAAATCCCAAATTCTA+GGG 0.461231 3_4:+10281384 Msa0489660:five_prime_UTR
TGGTGAAGATGAAGATCTAC+AGG 0.463551 3_4:+10282472 Msa0489660:CDS
TGGTGATAGTTTAGTAATTG+AGG 0.464590 3_4:+10284934 Msa0489660:CDS
TCACGATGAAAATGGAATCA+AGG 0.466507 3_4:+10281674 Msa0489660:CDS
AGGAAGCTGTGAATTCTAAA+GGG 0.468369 3_4:+10281784 Msa0489660:CDS
ATTGAGAGCTCTGCGAAACC+TGG 0.470452 3_4:+10282236 Msa0489660:CDS
AAAGACACCTTGCCTATAGT+TGG 0.470804 3_4:-10282324 None:intergenic
ATGAGAAAGGCCGTGGTAGT+AGG 0.471311 3_4:+10282153 Msa0489660:CDS
GATCTTCAGCACTTGTAGAC+TGG 0.475844 3_4:-10282550 None:intergenic
CTCTACTTCTTTATAACCTA+GGG 0.478091 3_4:-10284684 None:intergenic
TAAGGTGATGCAGAACTTGA+AGG 0.479356 3_4:+10284769 Msa0489660:CDS
GAGGAAGCTGTGAATTCTAA+AGG 0.479514 3_4:+10281783 Msa0489660:CDS
ACTCTACTTCTTTATAACCT+AGG 0.480486 3_4:-10284685 None:intergenic
TTGACTCTTCCACCACCTCC+AGG 0.481693 3_4:-10282254 None:intergenic
AATTCGAGTGCTGATGAATC+CGG 0.484587 3_4:+10281873 Msa0489660:CDS
TTCTGCGGCAAATCAGTCTT+GGG 0.487223 3_4:+10282499 Msa0489660:CDS
CTTGAAACAGCCTTGACTAC+TGG 0.491839 3_4:+10284632 Msa0489660:CDS
GTCCAGGAAGCACTTGAAGA+AGG 0.506986 3_4:+10282605 Msa0489660:CDS
AGAGGGGTTTATCTGGGTCT+GGG 0.510213 3_4:+10281907 Msa0489660:CDS
ATTCTGCGGCAAATCAGTCT+TGG 0.512363 3_4:+10282498 Msa0489660:CDS
TTCTTTATAACCTAGGGTGT+TGG 0.512371 3_4:-10284678 None:intergenic
CGTTACCTCCATCATAAACA+TGG 0.514459 3_4:-10282385 None:intergenic
GTGATGCAGAACTTGAAGGT+TGG 0.516204 3_4:+10284773 Msa0489660:CDS
TTCGAAGAATTTAGTGAACT+CGG 0.516442 3_4:+10282184 Msa0489660:CDS
GAAGAACAAAGCAGAAGAGT+TGG 0.517816 3_4:+10284901 Msa0489660:CDS
GCAAGGCGTGCTTGCTACGA+AGG 0.529878 3_4:+10284592 Msa0489660:CDS
TGTTGCTGAATTGGGTAGTG+AGG 0.530555 3_4:+10281764 Msa0489660:CDS
CACGATGAAAATGGAATCAA+GGG 0.532616 3_4:+10281675 Msa0489660:CDS
TCTGCGAAACCTGGAGGTGG+TGG 0.534968 3_4:+10282245 Msa0489660:CDS
TCTCGAATCTGAATCCAAGC+TGG 0.540931 3_4:-10282300 None:intergenic
CACTGCAGCTAGTGAGCTGA+AGG 0.547064 3_4:+10282124 Msa0489660:CDS
GAAGAATCTGCCAACACCCT+AGG 0.548150 3_4:+10284668 Msa0489660:CDS
CAAAAGGTTCAGCAAGGAAA+GGG 0.549338 3_4:+10282209 Msa0489660:CDS
ACTAGTAATGGAAAACATAG+TGG 0.551305 3_4:+10282356 Msa0489660:CDS
TGCAGAAGTCCAGAAATTCA+GGG 0.553635 3_4:+10284352 Msa0489660:intron
AAGTGTAGCAGTGCATCTGC+TGG 0.556258 3_4:+10284416 Msa0489660:CDS
CTGAAGGTGAGGCATGAGAA+AGG 0.556826 3_4:+10282140 Msa0489660:CDS
AGATTAACATCATGAACTGT+AGG 0.559173 3_4:-10285006 None:intergenic
CTTCAGCTCACTAGCTGCAG+TGG 0.561815 3_4:-10282123 None:intergenic
TCAAAAGGTTCAGCAAGGAA+AGG 0.565767 3_4:+10282208 Msa0489660:CDS
AATTTGTATTCCTACTACCA+CGG 0.566898 3_4:-10282163 None:intergenic
GCATCACCTTAGCGATGGCT+AGG 0.570346 3_4:-10284757 None:intergenic
TTCACCAAGGAAGATGAAGC+TGG 0.571532 3_4:+10282434 Msa0489660:CDS
GGTGTAAAACCAGATCAAGA+AGG 0.572427 3_4:+10281738 Msa0489660:CDS
GTGCTTCCTGGACAGCCTGA+AGG 0.572548 3_4:-10282595 None:intergenic
TAGGCAAAAGGTTGAAGCTG+AGG 0.572695 3_4:+10284727 Msa0489660:CDS
GTGAGGCATGAGAAAGGCCG+TGG 0.577436 3_4:+10282146 Msa0489660:CDS
TAGAATCTGTACTAGAACCC+CGG 0.580227 3_4:-10282028 None:intergenic
TCTGATGGGCATGCGATCCG+GGG 0.581710 3_4:+10282011 Msa0489660:CDS
GAGTGCTGATGAATCCGGTA+AGG 0.582886 3_4:+10281878 Msa0489660:CDS
GAATTTGAGTGAAAATCTGC+GGG 0.583607 3_4:+10281935 Msa0489660:CDS
TGAAAATCTGCGGGGTGTTG+AGG 0.588426 3_4:+10281944 Msa0489660:CDS
AGAAATGGAAGAGAATTAGG+AGG 0.592844 3_4:+10281832 Msa0489660:CDS
GGGGCACCAAGAAAAGGGGT+TGG 0.594012 3_4:+10281804 Msa0489660:CDS
AGGAAACTTACCAGTAGTCA+AGG 0.594780 3_4:-10284642 None:intergenic
AGGTTCAGCAAGGAAAGGGA+TGG 0.596261 3_4:+10282213 Msa0489660:CDS
CACAAAATGATAATAGAACA+AGG 0.596347 3_4:-10285226 None:intergenic
ACAGATTCTAGATATGCAGT+TGG 0.598937 3_4:+10282041 Msa0489660:CDS
CTCCTGATAGACTCGATCAA+AGG 0.598987 3_4:-10282572 None:intergenic
AGCTCTGCGAAACCTGGAGG+TGG 0.601277 3_4:+10282242 Msa0489660:CDS
CGAATTTGAGTGAAAATCTG+CGG 0.603111 3_4:+10281934 Msa0489660:CDS
AGAAGTAGAGTACGAGATCG+AGG 0.604863 3_4:+10284697 Msa0489660:CDS
TGGAAGAGTCAAGTTTGAGA+AGG 0.606509 3_4:+10282265 Msa0489660:CDS
GATGCAGAACTTGAAGGTTG+GGG 0.607398 3_4:+10284775 Msa0489660:CDS
GGATTTGGGAAGTGAATCAG+TGG 0.607830 3_4:+10281635 Msa0489660:CDS
ATTCTGAGAATAGTGAGGAT+CGG 0.607994 3_4:+10282087 Msa0489660:CDS
ACTGTCCGAAAATCAAGCAC+AGG 0.613967 3_4:+10284835 Msa0489660:CDS
GTTACCTCCATCATAAACAT+GGG 0.616232 3_4:-10282384 None:intergenic
CAGCTAGTGAGCTGAAGGTG+AGG 0.620748 3_4:+10282129 Msa0489660:CDS
ACTCGATATCTGAAACTCCA+AGG 0.620943 3_4:-10284525 None:intergenic
AGCAAGCTGGAGGAGTTGCA+AGG 0.625840 3_4:+10284575 Msa0489660:CDS
TCGAGATCCAACTATAGGCA+AGG 0.632294 3_4:+10282317 Msa0489660:CDS
TGAATACCTAGCCATCGCTA+AGG 0.643417 3_4:+10284751 Msa0489660:CDS
TAAAGGGGCACCAAGAAAAG+GGG 0.646182 3_4:+10281800 Msa0489660:CDS
GTTCTGCATCACCTTAGCGA+TGG 0.647863 3_4:-10284762 None:intergenic
AGGGTAAGTTCTATATAACA+AGG 0.651537 3_4:-10285167 None:intergenic
ACAGTTATCCCAAAATTCTG+GGG 0.661233 3_4:+10285051 Msa0489660:CDS
TTACCTCCATCATAAACATG+GGG 0.669072 3_4:-10282383 None:intergenic
TCGGCTCAAAAGGTTCAGCA+AGG 0.672328 3_4:+10282203 Msa0489660:CDS
GAGAGCTCTGCGAAACCTGG+AGG 0.672720 3_4:+10282239 Msa0489660:CDS
GGAAGCTGTGAATTCTAAAG+GGG 0.673317 3_4:+10281785 Msa0489660:CDS
GACTGATTCTGAGAATAGTG+AGG 0.685870 3_4:+10282082 Msa0489660:CDS
TCTCAACAAGATCATAGATG+CGG 0.693153 3_4:+10284859 Msa0489660:CDS
TACTAATGAACATTTCACCA+AGG 0.694692 3_4:+10282421 Msa0489660:CDS
GTTTATGATGGAGGTAACGA+TGG 0.695425 3_4:+10282389 Msa0489660:CDS
AGATCTACAGGAGAATTCTG+CGG 0.721794 3_4:+10282484 Msa0489660:CDS
TACCTCCATCATAAACATGG+GGG 0.749426 3_4:-10282382 None:intergenic
AATTTGAGTGAAAATCTGCG+GGG 0.860716 3_4:+10281936 Msa0489660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGTAATATGTATTATA+AGG - chr3_4:10283167-10283186 None:intergenic 10.0%
!! AGATTAAAAATGAAATAATA+TGG - chr3_4:10283530-10283549 None:intergenic 10.0%
!! TGGATTCATTTATTATTAAA+AGG + chr3_4:10281424-10281443 Msa0489660:five_prime_UTR 15.0%
!! TAAAAAGAGTAATGAAAAAA+TGG - chr3_4:10281496-10281515 None:intergenic 15.0%
!!! TGTGATATGTTTTATTTTTA+TGG + chr3_4:10282644-10282663 Msa0489660:intron 15.0%
!!! GTGATATGTTTTATTTTTAT+GGG + chr3_4:10282645-10282664 Msa0489660:intron 15.0%
!! ATAAAATAAGAAGGTTTATT+AGG - chr3_4:10282899-10282918 None:intergenic 15.0%
!! GTTAATTAGTTATGTTAATA+AGG - chr3_4:10283114-10283133 None:intergenic 15.0%
!!! AGTTTTAAATATAGTATTGT+TGG - chr3_4:10283310-10283329 None:intergenic 15.0%
!! AATACTTTCATAAAACATAA+TGG - chr3_4:10283680-10283699 None:intergenic 15.0%
!! GTATGAATCATATATATAAT+TGG + chr3_4:10284018-10284037 Msa0489660:intron 15.0%
!!! TTTTCATTTGCTTAAATTTT+TGG + chr3_4:10284145-10284164 Msa0489660:intron 15.0%
!! AGATTTACAATTTACATTAT+TGG + chr3_4:10284799-10284818 Msa0489660:CDS 15.0%
!! AAATTACAGTGAATTATTTA+AGG - chr3_4:10285257-10285276 None:intergenic 15.0%
!! TAATAAATGAATCCATGAAT+TGG - chr3_4:10281419-10281438 None:intergenic 20.0%
!! CTAAATATGAGAACAAAAAT+CGG - chr3_4:10281591-10281610 None:intergenic 20.0%
!! TTGAAATTGAAATATGGATT+TGG + chr3_4:10281620-10281639 Msa0489660:exon 20.0%
!! TGAAATTGAAATATGGATTT+GGG + chr3_4:10281621-10281640 Msa0489660:exon 20.0%
!! AATAAAACATATCACACAAT+AGG - chr3_4:10282640-10282659 None:intergenic 20.0%
!! TAACACGATATAAAATAAGA+AGG - chr3_4:10282908-10282927 None:intergenic 20.0%
!!! ATCAGTGAAATATTTTGAAT+TGG - chr3_4:10283090-10283109 None:intergenic 20.0%
!!! ATTTTGCATATTATTTCTTG+AGG + chr3_4:10283471-10283490 Msa0489660:intron 20.0%
!! GAATTATATGTTTAGAGAAA+AGG + chr3_4:10283808-10283827 Msa0489660:intron 20.0%
!!! TATTTCATCTTTTCTACAAT+AGG - chr3_4:10283844-10283863 None:intergenic 20.0%
! TTGTTCTCATATTTAGCTAA+AGG + chr3_4:10281595-10281614 Msa0489660:intron 25.0%
! AAGGAGTTGAAATTGAAATA+TGG + chr3_4:10281614-10281633 Msa0489660:exon 25.0%
! AAATTAGGGTTTCAATTTGA+TGG + chr3_4:10281708-10281727 Msa0489660:CDS 25.0%
!!! TTTCAATTTGATGGCAATTT+TGG + chr3_4:10281717-10281736 Msa0489660:CDS 25.0%
! TTTAGTACAGTTACTAGTAA+TGG + chr3_4:10282344-10282363 Msa0489660:CDS 25.0%
! ATATATGTTGCATTTACTCA+AGG - chr3_4:10282739-10282758 None:intergenic 25.0%
!! AACCTAGTATATAATTTGTC+TGG + chr3_4:10282856-10282875 Msa0489660:intron 25.0%
! ATTAAACAGAACCAAATACA+TGG - chr3_4:10282938-10282957 None:intergenic 25.0%
! GTGGTTAATATAATGTCAAA+TGG + chr3_4:10283358-10283377 Msa0489660:intron 25.0%
! AATGAAATAATATGGCCAAA+TGG - chr3_4:10283522-10283541 None:intergenic 25.0%
!!! AAAGTATTGAACTGAATGTT+GGG + chr3_4:10283692-10283711 Msa0489660:intron 25.0%
! AGATGAAATAATCTTGTTCT+TGG + chr3_4:10283854-10283873 Msa0489660:intron 25.0%
! CAAACCATTAAGAAAGATAT+TGG + chr3_4:10283978-10283997 Msa0489660:intron 25.0%
! AAGTCCAATATCTTTCTTAA+TGG - chr3_4:10283985-10284004 None:intergenic 25.0%
!! ATTGGACTTGAATGATTTTT+AGG + chr3_4:10283996-10284015 Msa0489660:intron 25.0%
! AATAAGTGCAAAATAGCATA+TGG - chr3_4:10284127-10284146 None:intergenic 25.0%
!! TGATGTTAATCTTGTTCTTT+TGG + chr3_4:10285017-10285036 Msa0489660:CDS 25.0%
!! CAAAATGAAACTAATTTTGC+AGG - chr3_4:10285095-10285114 None:intergenic 25.0%
! CACAAAATGATAATAGAACA+AGG - chr3_4:10285229-10285248 None:intergenic 25.0%
!! AATTCACTGTAATTTGAGTT+TGG + chr3_4:10285262-10285281 Msa0489660:three_prime_UTR 25.0%
!! ATTCACTGTAATTTGAGTTT+GGG + chr3_4:10285263-10285282 Msa0489660:three_prime_UTR 25.0%
!! GATGGATTTGCGATTTTATA+GGG - chr3_4:10281368-10281387 None:intergenic 30.0%
!!! TGATGGATTTGCGATTTTAT+AGG - chr3_4:10281369-10281388 None:intergenic 30.0%
CATCAAAATCCCAAATTCTA+GGG + chr3_4:10281384-10281403 Msa0489660:five_prime_UTR 30.0%
AAATCGAAACCCTAGAATTT+GGG - chr3_4:10281396-10281415 None:intergenic 30.0%
TGAAGAAATGGAAGAGAATT+AGG + chr3_4:10281829-10281848 Msa0489660:CDS 30.0%
AATTAGGAGGAATGTTGTTA+GGG + chr3_4:10281845-10281864 Msa0489660:CDS 30.0%
AATTTGTATTCCTACTACCA+CGG - chr3_4:10282166-10282185 None:intergenic 30.0%
TTCGAAGAATTTAGTGAACT+CGG + chr3_4:10282184-10282203 Msa0489660:CDS 30.0%
! ACTAGTAATGGAAAACATAG+TGG + chr3_4:10282356-10282375 Msa0489660:CDS 30.0%
TACTAATGAACATTTCACCA+AGG + chr3_4:10282421-10282440 Msa0489660:CDS 30.0%
!!! TTGTTCTCACTTTTTTCTTC+AGG - chr3_4:10282530-10282549 None:intergenic 30.0%
AAACATATCACACAATAGGA+CGG - chr3_4:10282636-10282655 None:intergenic 30.0%
TTACTCAAGGATTATAACAC+CGG - chr3_4:10282726-10282745 None:intergenic 30.0%
TTGTCAACAAACTGATGATA+AGG - chr3_4:10282764-10282783 None:intergenic 30.0%
!! ATCATCAGTTTGTTGACAAT+TGG + chr3_4:10282765-10282784 Msa0489660:intron 30.0%
AGCCAGACAAATTATATACT+AGG - chr3_4:10282861-10282880 None:intergenic 30.0%
!! TTGGTTCTGTTTAATCAGTT+TGG + chr3_4:10282943-10282962 Msa0489660:intron 30.0%
TCTGTTTAATCAGTTTGGTT+TGG + chr3_4:10282948-10282967 Msa0489660:intron 30.0%
! TTATAAGGTATCTGTGAGTA+AGG - chr3_4:10283152-10283171 None:intergenic 30.0%
! TTTAGAGCCTTAAGTTATGA+TGG + chr3_4:10283216-10283235 Msa0489660:intron 30.0%
!! GAAAGTATTGAACTGAATGT+TGG + chr3_4:10283691-10283710 Msa0489660:intron 30.0%
TATATGTTTAGAGAAAAGGC+AGG + chr3_4:10283812-10283831 Msa0489660:intron 30.0%
ATATGTTTAGAGAAAAGGCA+GGG + chr3_4:10283813-10283832 Msa0489660:intron 30.0%
TGAAATAATCTTGTTCTTGG+TGG + chr3_4:10283857-10283876 Msa0489660:intron 30.0%
! TCTTAATGGTTTGACTTTAC+TGG - chr3_4:10283971-10283990 None:intergenic 30.0%
!!! ATGAAGTTCTGTCTTTTTTC+TGG + chr3_4:10284272-10284291 Msa0489660:intron 30.0%
TACAAATTGGTTATCAGCAA+TGG - chr3_4:10284324-10284343 None:intergenic 30.0%
! GAAACAACATGTAAACCTTT+TGG + chr3_4:10284550-10284569 Msa0489660:CDS 30.0%
CTCTACTTCTTTATAACCTA+GGG - chr3_4:10284687-10284706 None:intergenic 30.0%
ACTCTACTTCTTTATAACCT+AGG - chr3_4:10284688-10284707 None:intergenic 30.0%
TGGTGATAGTTTAGTAATTG+AGG + chr3_4:10284934-10284953 Msa0489660:CDS 30.0%
AGATTAACATCATGAACTGT+AGG - chr3_4:10285009-10285028 None:intergenic 30.0%
AGGGTAAGTTCTATATAACA+AGG - chr3_4:10285170-10285189 None:intergenic 30.0%
!!! AGAACTTACCCTTCTTTTTT+AGG + chr3_4:10285178-10285197 Msa0489660:three_prime_UTR 30.0%
!!! GAACTTACCCTTCTTTTTTA+GGG + chr3_4:10285179-10285198 Msa0489660:three_prime_UTR 30.0%
!! CCTAGAATTTGGGATTTTGA+TGG - chr3_4:10281386-10281405 None:intergenic 35.0%
CCATCAAAATCCCAAATTCT+AGG + chr3_4:10281383-10281402 Msa0489660:five_prime_UTR 35.0%
GAAATCGAAACCCTAGAATT+TGG - chr3_4:10281397-10281416 None:intergenic 35.0%
GAAGTGAATCACGATGAAAA+TGG + chr3_4:10281666-10281685 Msa0489660:CDS 35.0%
TCACGATGAAAATGGAATCA+AGG + chr3_4:10281674-10281693 Msa0489660:CDS 35.0%
CACGATGAAAATGGAATCAA+GGG + chr3_4:10281675-10281694 Msa0489660:CDS 35.0%
! AAGGGTTCTGATGAGAAATT+AGG + chr3_4:10281693-10281712 Msa0489660:CDS 35.0%
! AGGGTTCTGATGAGAAATTA+GGG + chr3_4:10281694-10281713 Msa0489660:CDS 35.0%
AGAAGGAATTGTTGCTGAAT+TGG + chr3_4:10281755-10281774 Msa0489660:CDS 35.0%
GAAGGAATTGTTGCTGAATT+GGG + chr3_4:10281756-10281775 Msa0489660:CDS 35.0%
AGGAAGCTGTGAATTCTAAA+GGG + chr3_4:10281784-10281803 Msa0489660:CDS 35.0%
AGAAATGGAAGAGAATTAGG+AGG + chr3_4:10281832-10281851 Msa0489660:CDS 35.0%
GAATTAGGAGGAATGTTGTT+AGG + chr3_4:10281844-10281863 Msa0489660:CDS 35.0%
!! TTTTGAAGAGGGGTTTATCT+GGG + chr3_4:10281901-10281920 Msa0489660:CDS 35.0%
CGAATTTGAGTGAAAATCTG+CGG + chr3_4:10281934-10281953 Msa0489660:CDS 35.0%
GAATTTGAGTGAAAATCTGC+GGG + chr3_4:10281935-10281954 Msa0489660:CDS 35.0%
AATTTGAGTGAAAATCTGCG+GGG + chr3_4:10281936-10281955 Msa0489660:CDS 35.0%
GTGTTGAGGAAAAAAACGAT+GGG + chr3_4:10281958-10281977 Msa0489660:CDS 35.0%
! GGAATGTAGTGTTTTCTGAT+GGG + chr3_4:10281997-10282016 Msa0489660:CDS 35.0%
ACAGATTCTAGATATGCAGT+TGG + chr3_4:10282041-10282060 Msa0489660:CDS 35.0%
!!! TTGGATCTGGTTTTGTTGTT+GGG + chr3_4:10282060-10282079 Msa0489660:CDS 35.0%
! ATTCTGAGAATAGTGAGGAT+CGG + chr3_4:10282087-10282106 Msa0489660:CDS 35.0%
GGAAAATTCTATTTCCAGCT+TGG + chr3_4:10282286-10282305 Msa0489660:CDS 35.0%
TTACCTCCATCATAAACATG+GGG - chr3_4:10282386-10282405 None:intergenic 35.0%
GTTACCTCCATCATAAACAT+GGG - chr3_4:10282387-10282406 None:intergenic 35.0%
CAACAATCTCAATTGCAGAT+TGG - chr3_4:10282698-10282717 None:intergenic 35.0%
AATTGAGATTGTTGTGTTGC+CGG + chr3_4:10282704-10282723 Msa0489660:intron 35.0%
GAAGGTTTATTAGGCAGTTA+GGG - chr3_4:10282890-10282909 None:intergenic 35.0%
AGAAGGTTTATTAGGCAGTT+AGG - chr3_4:10282891-10282910 None:intergenic 35.0%
GTTAAGCCAAACCATGTATT+TGG + chr3_4:10282924-10282943 Msa0489660:intron 35.0%
ACAGAACCAAATACATGGTT+TGG - chr3_4:10282933-10282952 None:intergenic 35.0%
AGATTATATTGCCACCTTAC+AGG - chr3_4:10283023-10283042 None:intergenic 35.0%
! TGACTAGCAGTTGCAAATTT+TGG + chr3_4:10283050-10283069 Msa0489660:intron 35.0%
GTGTAGACCATCATAACTTA+AGG - chr3_4:10283226-10283245 None:intergenic 35.0%
CATGTAGAGAAATAAAGTGC+TGG - chr3_4:10283409-10283428 None:intergenic 35.0%
TCATTTGTACATGACTTGAG+AGG + chr3_4:10283495-10283514 Msa0489660:intron 35.0%
!! AATCTCATGCATTGACTTGA+TGG + chr3_4:10283545-10283564 Msa0489660:intron 35.0%
!! ATCTCATGCATTGACTTGAT+GGG + chr3_4:10283546-10283565 Msa0489660:intron 35.0%
ATCATAAGATCCAAGTGAGA+TGG + chr3_4:10283588-10283607 Msa0489660:intron 35.0%
GTTGGAATGGATCAATGTTT+CGG + chr3_4:10283610-10283629 Msa0489660:intron 35.0%
TTGGAATGGATCAATGTTTC+GGG + chr3_4:10283611-10283630 Msa0489660:intron 35.0%
CACAAATGAGAATACTGCAT+TGG + chr3_4:10283749-10283768 Msa0489660:intron 35.0%
! ATAATCTTGTTCTTGGTGGT+TGG + chr3_4:10283861-10283880 Msa0489660:intron 35.0%
ATCGTAGATGTAGATCAGAT+GGG + chr3_4:10283915-10283934 Msa0489660:intron 35.0%
ACATGACTTGATCCAACAAT+AGG + chr3_4:10284048-10284067 Msa0489660:intron 35.0%
GCATCATTGTTTCCTATTGT+TGG - chr3_4:10284063-10284082 None:intergenic 35.0%
AGGAAACAATGATGCAAAGT+AGG + chr3_4:10284068-10284087 Msa0489660:intron 35.0%
TATGCCAATAAACTACTTGC+AGG - chr3_4:10284244-10284263 None:intergenic 35.0%
TGGAAGAAAAGAATCGAGTA+TGG + chr3_4:10284292-10284311 Msa0489660:intron 35.0%
TATCAATCTCCCTGAATTTC+TGG - chr3_4:10284364-10284383 None:intergenic 35.0%
TTCTTTATAACCTAGGGTGT+TGG - chr3_4:10284681-10284700 None:intergenic 35.0%
TCTCAACAAGATCATAGATG+CGG + chr3_4:10284859-10284878 Msa0489660:CDS 35.0%
GAAGAGTTGGAAAAATACTG+TGG + chr3_4:10284914-10284933 Msa0489660:CDS 35.0%
TCACAGTTATCCCAAAATTC+TGG + chr3_4:10285049-10285068 Msa0489660:CDS 35.0%
CACAGTTATCCCAAAATTCT+GGG + chr3_4:10285050-10285069 Msa0489660:CDS 35.0%
ACAGTTATCCCAAAATTCTG+GGG + chr3_4:10285051-10285070 Msa0489660:CDS 35.0%
! CTAATTTTGCAGGCTTAAGT+CGG - chr3_4:10285085-10285104 None:intergenic 35.0%
!!! TTACCCTTCTTTTTTAGGGT+AGG + chr3_4:10285183-10285202 Msa0489660:three_prime_UTR 35.0%
!!! TACCCTTCTTTTTTAGGGTA+GGG + chr3_4:10285184-10285203 Msa0489660:three_prime_UTR 35.0%
GGGTTTCGATTTCCAATTCA+TGG + chr3_4:10281404-10281423 Msa0489660:five_prime_UTR 40.0%
GGTGTAAAACCAGATCAAGA+AGG + chr3_4:10281738-10281757 Msa0489660:CDS 40.0%
GCAACAATTCCTTCTTGATC+TGG - chr3_4:10281750-10281769 None:intergenic 40.0%
GAGGAAGCTGTGAATTCTAA+AGG + chr3_4:10281783-10281802 Msa0489660:CDS 40.0%
! GGAAGCTGTGAATTCTAAAG+GGG + chr3_4:10281785-10281804 Msa0489660:CDS 40.0%
! TTCAATCCAACCCCTTTTCT+TGG - chr3_4:10281813-10281832 None:intergenic 40.0%
AAGGGGTTGGATTGAAGAAA+TGG + chr3_4:10281817-10281836 Msa0489660:CDS 40.0%
!! AATTCGAGTGCTGATGAATC+CGG + chr3_4:10281873-10281892 Msa0489660:CDS 40.0%
!!! AATCCGGTAAGGTTTTGAAG+AGG + chr3_4:10281889-10281908 Msa0489660:CDS 40.0%
!!! ATCCGGTAAGGTTTTGAAGA+GGG + chr3_4:10281890-10281909 Msa0489660:CDS 40.0%
!!! GTTTTGAAGAGGGGTTTATC+TGG + chr3_4:10281900-10281919 Msa0489660:CDS 40.0%
! GGTGTTGAGGAAAAAAACGA+TGG + chr3_4:10281957-10281976 Msa0489660:CDS 40.0%
! GGGAATGTAGTGTTTTCTGA+TGG + chr3_4:10281996-10282015 Msa0489660:CDS 40.0%
TAGAATCTGTACTAGAACCC+CGG - chr3_4:10282031-10282050 None:intergenic 40.0%
TCTAGATATGCAGTTGGATC+TGG + chr3_4:10282047-10282066 Msa0489660:CDS 40.0%
!!! GTTGGATCTGGTTTTGTTGT+TGG + chr3_4:10282059-10282078 Msa0489660:CDS 40.0%
! GACTGATTCTGAGAATAGTG+AGG + chr3_4:10282082-10282101 Msa0489660:CDS 40.0%
TTTAGTGAACTCGGCTCAAA+AGG + chr3_4:10282193-10282212 Msa0489660:CDS 40.0%
TCAAAAGGTTCAGCAAGGAA+AGG + chr3_4:10282208-10282227 Msa0489660:CDS 40.0%
CAAAAGGTTCAGCAAGGAAA+GGG + chr3_4:10282209-10282228 Msa0489660:CDS 40.0%
TGGAAGAGTCAAGTTTGAGA+AGG + chr3_4:10282265-10282284 Msa0489660:CDS 40.0%
CAGATTCGAGATCCAACTAT+AGG + chr3_4:10282312-10282331 Msa0489660:CDS 40.0%
AAAGACACCTTGCCTATAGT+TGG - chr3_4:10282327-10282346 None:intergenic 40.0%
TACCTCCATCATAAACATGG+GGG - chr3_4:10282385-10282404 None:intergenic 40.0%
CGTTACCTCCATCATAAACA+TGG - chr3_4:10282388-10282407 None:intergenic 40.0%
! GTTTATGATGGAGGTAACGA+TGG + chr3_4:10282389-10282408 Msa0489660:CDS 40.0%
ATAACCAGCTTCATCTTCCT+TGG - chr3_4:10282441-10282460 None:intergenic 40.0%
AAGGAAGATGAAGCTGGTTA+TGG + chr3_4:10282440-10282459 Msa0489660:CDS 40.0%
TGGTGAAGATGAAGATCTAC+AGG + chr3_4:10282472-10282491 Msa0489660:CDS 40.0%
AGATCTACAGGAGAATTCTG+CGG + chr3_4:10282484-10282503 Msa0489660:CDS 40.0%
ATCCTTTGATCGAGTCTATC+AGG + chr3_4:10282570-10282589 Msa0489660:CDS 40.0%
AATTGCAGATTGGCAACAAG+AGG - chr3_4:10282688-10282707 None:intergenic 40.0%
TGTCAATTAAGCTGCTAGCA+AGG + chr3_4:10282813-10282832 Msa0489660:intron 40.0%
CAAAAACACCATCTAGTAGC+AGG - chr3_4:10282987-10283006 None:intergenic 40.0%
TATGATGGTCTACACTCTAC+AGG + chr3_4:10283231-10283250 Msa0489660:intron 40.0%
CAGCACAGATCTAAATATGC+AGG - chr3_4:10283338-10283357 None:intergenic 40.0%
CTGCATATTTAGATCTGTGC+TGG + chr3_4:10283336-10283355 Msa0489660:intron 40.0%
CATATTTAGATCTGTGCTGG+TGG + chr3_4:10283339-10283358 Msa0489660:intron 40.0%
!! TCTCATGCATTGACTTGATG+GGG + chr3_4:10283547-10283566 Msa0489660:intron 40.0%
TAAGATCCAAGTGAGATGGT+TGG + chr3_4:10283592-10283611 Msa0489660:intron 40.0%
CATCGTAGATGTAGATCAGA+TGG + chr3_4:10283914-10283933 Msa0489660:intron 40.0%
TCGTAGATGTAGATCAGATG+GGG + chr3_4:10283916-10283935 Msa0489660:intron 40.0%
TCTTCCTCAATGTCAAGCAA+TGG - chr3_4:10283948-10283967 None:intergenic 40.0%
! CTGCAAGAGCACATACAAAT+TGG - chr3_4:10284337-10284356 None:intergenic 40.0%
TTGCAGAAGTCCAGAAATTC+AGG + chr3_4:10284351-10284370 Msa0489660:intron 40.0%
TGCAGAAGTCCAGAAATTCA+GGG + chr3_4:10284352-10284371 Msa0489660:intron 40.0%
! ACTCGATATCTGAAACTCCA+AGG - chr3_4:10284528-10284547 None:intergenic 40.0%
!! AAACCTTTTGGAAAGCAAGC+TGG + chr3_4:10284562-10284581 Msa0489660:CDS 40.0%
AGGAAACTTACCAGTAGTCA+AGG - chr3_4:10284645-10284664 None:intergenic 40.0%
! GTGTTGGCAGATTCTTCTTT+AGG - chr3_4:10284665-10284684 None:intergenic 40.0%
! ACGAGATCGAGGATCTTTTT+AGG + chr3_4:10284708-10284727 Msa0489660:CDS 40.0%
!! CGAGGATCTTTTTAGGCAAA+AGG + chr3_4:10284715-10284734 Msa0489660:CDS 40.0%
TAAGGTGATGCAGAACTTGA+AGG + chr3_4:10284769-10284788 Msa0489660:CDS 40.0%
TGATGCAGAACTTGAAGGTT+GGG + chr3_4:10284774-10284793 Msa0489660:CDS 40.0%
! GAGAACCTGTGCTTGATTTT+CGG - chr3_4:10284843-10284862 None:intergenic 40.0%
GAAGAACAAAGCAGAAGAGT+TGG + chr3_4:10284901-10284920 Msa0489660:CDS 40.0%
! GCTGCAGAAAAGAGTATGTA+AGG + chr3_4:10284967-10284986 Msa0489660:CDS 40.0%
! CACAACAACCCCAGAATTTT+GGG - chr3_4:10285062-10285081 None:intergenic 40.0%
!!! ACCCTTCTTTTTTAGGGTAG+GGG + chr3_4:10285185-10285204 Msa0489660:three_prime_UTR 40.0%
TCCCCTACCCTAAAAAAGAA+GGG - chr3_4:10285189-10285208 None:intergenic 40.0%
ATCCCCTACCCTAAAAAAGA+AGG - chr3_4:10285190-10285209 None:intergenic 40.0%
GGATTTGGGAAGTGAATCAG+TGG + chr3_4:10281635-10281654 Msa0489660:CDS 45.0%
TGTTGCTGAATTGGGTAGTG+AGG + chr3_4:10281764-10281783 Msa0489660:CDS 45.0%
!! TCTAAAGGGGCACCAAGAAA+AGG + chr3_4:10281798-10281817 Msa0489660:CDS 45.0%
!! CTAAAGGGGCACCAAGAAAA+GGG + chr3_4:10281799-10281818 Msa0489660:CDS 45.0%
!! TAAAGGGGCACCAAGAAAAG+GGG + chr3_4:10281800-10281819 Msa0489660:CDS 45.0%
!!! TCCGGTAAGGTTTTGAAGAG+GGG + chr3_4:10281891-10281910 Msa0489660:CDS 45.0%
ACCCCTCTTCAAAACCTTAC+CGG - chr3_4:10281895-10281914 None:intergenic 45.0%
TCTCGAATCTGAATCCAAGC+TGG - chr3_4:10282303-10282322 None:intergenic 45.0%
TCGAGATCCAACTATAGGCA+AGG + chr3_4:10282317-10282336 Msa0489660:CDS 45.0%
GGTAACCCCCATGTTTATGA+TGG + chr3_4:10282377-10282396 Msa0489660:CDS 45.0%
AACCCCCATGTTTATGATGG+AGG + chr3_4:10282380-10282399 Msa0489660:CDS 45.0%
TTCACCAAGGAAGATGAAGC+TGG + chr3_4:10282434-10282453 Msa0489660:CDS 45.0%
GCTGGTTATGGCAACGAAAA+TGG + chr3_4:10282452-10282471 Msa0489660:CDS 45.0%
ATTCTGCGGCAAATCAGTCT+TGG + chr3_4:10282498-10282517 Msa0489660:CDS 45.0%
TTCTGCGGCAAATCAGTCTT+GGG + chr3_4:10282499-10282518 Msa0489660:CDS 45.0%
GATCTTCAGCACTTGTAGAC+TGG - chr3_4:10282553-10282572 None:intergenic 45.0%
CTCCTGATAGACTCGATCAA+AGG - chr3_4:10282575-10282594 None:intergenic 45.0%
AACCTTCTTCAAGTGCTTCC+TGG - chr3_4:10282610-10282629 None:intergenic 45.0%
TCTAGTAGCAGGTGAGTTCA+AGG - chr3_4:10282976-10282995 None:intergenic 45.0%
TGAACTCACCTGCTACTAGA+TGG + chr3_4:10282976-10282995 Msa0489660:intron 45.0%
GCATAAAGTTGCTGCCTGTA+AGG + chr3_4:10283006-10283025 Msa0489660:intron 45.0%
TAAAGTTGCTGCCTGTAAGG+TGG + chr3_4:10283009-10283028 Msa0489660:intron 45.0%
CAAATGGAGAATGAGCACCT+TGG + chr3_4:10283374-10283393 Msa0489660:intron 45.0%
! AGTGCTGGAGAAACTTTCCA+AGG - chr3_4:10283394-10283413 None:intergenic 45.0%
CATGACTTGAGAGGTCCATT+TGG + chr3_4:10283504-10283523 Msa0489660:intron 45.0%
! TTGACTTGATGGGGAGATAG+AGG + chr3_4:10283556-10283575 Msa0489660:intron 45.0%
TGACTTGATGGGGAGATAGA+GGG + chr3_4:10283557-10283576 Msa0489660:intron 45.0%
TCCAAGTGAGATGGTTGGAA+TGG + chr3_4:10283597-10283616 Msa0489660:intron 45.0%
TCCATTCCAACCATCTCACT+TGG - chr3_4:10283601-10283620 None:intergenic 45.0%
TGTTTAGAGAAAAGGCAGGG+TGG + chr3_4:10283816-10283835 Msa0489660:intron 45.0%
CGTAGATGTAGATCAGATGG+GGG + chr3_4:10283917-10283936 Msa0489660:intron 45.0%
TGGTCCATTGCTTGACATTG+AGG + chr3_4:10283941-10283960 Msa0489660:intron 45.0%
GCTGCCTGCAAGTAGTTTAT+TGG + chr3_4:10284237-10284256 Msa0489660:intron 45.0%
CACTTAACTGAGTCGTCTTC+TGG - chr3_4:10284401-10284420 None:intergenic 45.0%
GGTATCACTGCTGTTGATCT+TGG + chr3_4:10284437-10284456 Msa0489660:CDS 45.0%
GGAACTTGAAGCAGCTTGAT+TGG - chr3_4:10284507-10284526 None:intergenic 45.0%
! TCAAGCTGCTTCAAGTTCCT+TGG + chr3_4:10284508-10284527 Msa0489660:CDS 45.0%
! TGCTTGCTACGAAGGATTCT+AGG + chr3_4:10284600-10284619 Msa0489660:CDS 45.0%
CTTGAAACAGCCTTGACTAC+TGG + chr3_4:10284632-10284651 Msa0489660:CDS 45.0%
AGAAGTAGAGTACGAGATCG+AGG + chr3_4:10284697-10284716 Msa0489660:CDS 45.0%
TAGGCAAAAGGTTGAAGCTG+AGG + chr3_4:10284727-10284746 Msa0489660:CDS 45.0%
TGAATACCTAGCCATCGCTA+AGG + chr3_4:10284751-10284770 Msa0489660:CDS 45.0%
GTGATGCAGAACTTGAAGGT+TGG + chr3_4:10284773-10284792 Msa0489660:CDS 45.0%
GATGCAGAACTTGAAGGTTG+GGG + chr3_4:10284775-10284794 Msa0489660:CDS 45.0%
ACTGTCCGAAAATCAAGCAC+AGG + chr3_4:10284835-10284854 Msa0489660:CDS 45.0%
GATCATAGATGCGGAGAGTA+AGG + chr3_4:10284868-10284887 Msa0489660:CDS 45.0%
! GCACAACAACCCCAGAATTT+TGG - chr3_4:10285063-10285082 None:intergenic 45.0%
!! GAGTGCTGATGAATCCGGTA+AGG + chr3_4:10281878-10281897 Msa0489660:CDS 50.0%
AAGAGGGGTTTATCTGGGTC+TGG + chr3_4:10281906-10281925 Msa0489660:CDS 50.0%
AGAGGGGTTTATCTGGGTCT+GGG + chr3_4:10281907-10281926 Msa0489660:CDS 50.0%
!! TGAAAATCTGCGGGGTGTTG+AGG + chr3_4:10281944-10281963 Msa0489660:CDS 50.0%
! TTTCTGATGGGCATGCGATC+CGG + chr3_4:10282009-10282028 Msa0489660:CDS 50.0%
CTGAAGGTGAGGCATGAGAA+AGG + chr3_4:10282140-10282159 Msa0489660:CDS 50.0%
ATGAGAAAGGCCGTGGTAGT+AGG + chr3_4:10282153-10282172 Msa0489660:CDS 50.0%
TCGGCTCAAAAGGTTCAGCA+AGG + chr3_4:10282203-10282222 Msa0489660:CDS 50.0%
AGGTTCAGCAAGGAAAGGGA+TGG + chr3_4:10282213-10282232 Msa0489660:CDS 50.0%
ATTGAGAGCTCTGCGAAACC+TGG + chr3_4:10282236-10282255 Msa0489660:CDS 50.0%
!! GTCCAGGAAGCACTTGAAGA+AGG + chr3_4:10282605-10282624 Msa0489660:CDS 50.0%
GACTTGATGGGGAGATAGAG+GGG + chr3_4:10283558-10283577 Msa0489660:intron 50.0%
ACTTGATGGGGAGATAGAGG+GGG + chr3_4:10283559-10283578 Msa0489660:intron 50.0%
GATGTAGATCAGATGGGGGA+TGG + chr3_4:10283921-10283940 Msa0489660:intron 50.0%
AAGTGTAGCAGTGCATCTGC+TGG + chr3_4:10284416-10284435 Msa0489660:CDS 50.0%
! CCTCCAGCTTGCTTTCCAAA+AGG - chr3_4:10284568-10284587 None:intergenic 50.0%
!! CCTTTTGGAAAGCAAGCTGG+AGG + chr3_4:10284565-10284584 Msa0489660:CDS 50.0%
GAAGAATCTGCCAACACCCT+AGG + chr3_4:10284668-10284687 Msa0489660:CDS 50.0%
GTTCTGCATCACCTTAGCGA+TGG - chr3_4:10284765-10284784 None:intergenic 50.0%
ATGGGTCTTCGAGCGCGTTT+GGG + chr3_4:10281976-10281995 Msa0489660:CDS 55.0%
! TTCTGATGGGCATGCGATCC+GGG + chr3_4:10282010-10282029 Msa0489660:CDS 55.0%
CTTCAGCTCACTAGCTGCAG+TGG - chr3_4:10282126-10282145 None:intergenic 55.0%
CACTGCAGCTAGTGAGCTGA+AGG + chr3_4:10282124-10282143 Msa0489660:CDS 55.0%
CAGCTAGTGAGCTGAAGGTG+AGG + chr3_4:10282129-10282148 Msa0489660:CDS 55.0%
TTGACTCTTCCACCACCTCC+AGG - chr3_4:10282257-10282276 None:intergenic 55.0%
CGAGTCTATCAGGAGCCTTC+AGG + chr3_4:10282580-10282599 Msa0489660:CDS 55.0%
AGCAAGCTGGAGGAGTTGCA+AGG + chr3_4:10284575-10284594 Msa0489660:CDS 55.0%
GCATCACCTTAGCGATGGCT+AGG - chr3_4:10284760-10284779 None:intergenic 55.0%
! GGGGCACCAAGAAAAGGGGT+TGG + chr3_4:10281804-10281823 Msa0489660:CDS 60.0%
GATGGGTCTTCGAGCGCGTT+TGG + chr3_4:10281975-10281994 Msa0489660:CDS 60.0%
! TCTGATGGGCATGCGATCCG+GGG + chr3_4:10282011-10282030 Msa0489660:CDS 60.0%
GTGAGGCATGAGAAAGGCCG+TGG + chr3_4:10282146-10282165 Msa0489660:CDS 60.0%
GAGAGCTCTGCGAAACCTGG+AGG + chr3_4:10282239-10282258 Msa0489660:CDS 60.0%
AGCTCTGCGAAACCTGGAGG+TGG + chr3_4:10282242-10282261 Msa0489660:CDS 60.0%
TCTGCGAAACCTGGAGGTGG+TGG + chr3_4:10282245-10282264 Msa0489660:CDS 60.0%
GTGCTTCCTGGACAGCCTGA+AGG - chr3_4:10282598-10282617 None:intergenic 60.0%
! GCAAGGCGTGCTTGCTACGA+AGG + chr3_4:10284592-10284611 Msa0489660:CDS 60.0%
CAGGAGCCTTCAGGCTGTCC+AGG + chr3_4:10282589-10282608 Msa0489660:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 10281293 10285347 10281293 ID=Msa0489660;Name=Msa0489660
chr3_4 mRNA 10281293 10285347 10281293 ID=Msa0489660-mRNA-1;Parent=Msa0489660;Name=Msa0489660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=175|1|1|1|0.5|0.33|3|257|575
chr3_4 exon 10281293 10281445 10281293 ID=Msa0489660-mRNA-1:exon:3304;Parent=Msa0489660-mRNA-1
chr3_4 exon 10281611 10282626 10281611 ID=Msa0489660-mRNA-1:exon:3305;Parent=Msa0489660-mRNA-1
chr3_4 exon 10284357 10285347 10284357 ID=Msa0489660-mRNA-1:exon:3306;Parent=Msa0489660-mRNA-1
chr3_4 five_prime_UTR 10281293 10281445 10281293 ID=Msa0489660-mRNA-1:five_prime_utr;Parent=Msa0489660-mRNA-1
chr3_4 five_prime_UTR 10281611 10281632 10281611 ID=Msa0489660-mRNA-1:five_prime_utr;Parent=Msa0489660-mRNA-1
chr3_4 CDS 10281633 10282626 10281633 ID=Msa0489660-mRNA-1:cds;Parent=Msa0489660-mRNA-1
chr3_4 CDS 10284357 10285090 10284357 ID=Msa0489660-mRNA-1:cds;Parent=Msa0489660-mRNA-1
chr3_4 three_prime_UTR 10285091 10285347 10285091 ID=Msa0489660-mRNA-1:three_prime_utr;Parent=Msa0489660-mRNA-1
Gene Sequence

>Msa0489660

ATGGATTTGGGAAGTGAATCAGTGGAAGAGAATGAAGTGAATCACGATGAAAATGGAATCAAGGGTTCTGATGAGAAATTAGGGTTTCAATTTGATGGCAATTTTGGTGTAAAACCAGATCAAGAAGGAATTGTTGCTGAATTGGGTAGTGAGGAAGCTGTGAATTCTAAAGGGGCACCAAGAAAAGGGGTTGGATTGAAGAAATGGAAGAGAATTAGGAGGAATGTTGTTAGGGATCATAATTCGAGTGCTGATGAATCCGGTAAGGTTTTGAAGAGGGGTTTATCTGGGTCTGGGAATGCGAATTTGAGTGAAAATCTGCGGGGTGTTGAGGAAAAAAACGATGGGTCTTCGAGCGCGTTTGGGAATGTAGTGTTTTCTGATGGGCATGCGATCCGGGGTTCTAGTACAGATTCTAGATATGCAGTTGGATCTGGTTTTGTTGTTGGGACTGATTCTGAGAATAGTGAGGATCGGAGTAGTAAGTCTTCCACTGCAGCTAGTGAGCTGAAGGTGAGGCATGAGAAAGGCCGTGGTAGTAGGAATACAAATTCGAAGAATTTAGTGAACTCGGCTCAAAAGGTTCAGCAAGGAAAGGGATGGATTGAGAGCTCTGCGAAACCTGGAGGTGGTGGAAGAGTCAAGTTTGAGAAGGAAAATTCTATTTCCAGCTTGGATTCAGATTCGAGATCCAACTATAGGCAAGGTGTCTTTAGTACAGTTACTAGTAATGGAAAACATAGTGGTAACCCCCATGTTTATGATGGAGGTAACGATGGTGAAGCTCATACTAATGAACATTTCACCAAGGAAGATGAAGCTGGTTATGGCAACGAAAATGGTGAAGATGAAGATCTACAGGAGAATTCTGCGGCAAATCAGTCTTGGGATGCTCCTGAAGAAAAAAGTGAGAACAACCAGTCTACAAGTGCTGAAGATCCTTTGATCGAGTCTATCAGGAGCCTTCAGGCTGTCCAGGAAGCACTTGAAGAAGAAGTCCAGAAATTCAGGGAGATTGATACTGAAGTTGTCTCACCAGAAGACGACTCAGTTAAGTGTAGCAGTGCATCTGCTGGTATCACTGCTGTTGATCTTGGACTTCACAAGTCATTCTTATCTAGTCATTCTAGTGCAGATGAAACCAATCAAGCTGCTTCAAGTTCCTTGGAGTTTCAGATATCGAGTTTGAAACAACATGTAAACCTTTTGGAAAGCAAGCTGGAGGAGTTGCAAGGCGTGCTTGCTACGAAGGATTCTAGGATAGTTGAACTTGAAACAGCCTTGACTACTGGTAAGTTTCCTAAAGAAGAATCTGCCAACACCCTAGGTTATAAAGAAGTAGAGTACGAGATCGAGGATCTTTTTAGGCAAAAGGTTGAAGCTGAGGTTGAATACCTAGCCATCGCTAAGGTGATGCAGAACTTGAAGGTTGGGGCAGATTTACAATTTACATTATTGGAAGAACAAGAGAAACTGTCCGAAAATCAAGCACAGGTTCTCAACAAGATCATAGATGCGGAGAGTAAGGCTTCAGTGCTGAAGAACAAAGCAGAAGAGTTGGAAAAATACTGTGGTGATAGTTTAGTAATTGAGGAATCTTTTTTGCTGCAGAAAAGAGTATGTAAGGTGTCTTTTTATCTTTTCCTACAGTTCATGATGTTAATCTTGTTCTTTTGGTTTCTTGTGTCACAGTTATCCCAAAATTCTGGGGTTGTTGTGCCGACTTAA

Protein sequence

>Msa0489660

MDLGSESVEENEVNHDENGIKGSDEKLGFQFDGNFGVKPDQEGIVAELGSEEAVNSKGAPRKGVGLKKWKRIRRNVVRDHNSSADESGKVLKRGLSGSGNANLSENLRGVEEKNDGSSSAFGNVVFSDGHAIRGSSTDSRYAVGSGFVVGTDSENSEDRSSKSSTAASELKVRHEKGRGSRNTNSKNLVNSAQKVQQGKGWIESSAKPGGGGRVKFEKENSISSLDSDSRSNYRQGVFSTVTSNGKHSGNPHVYDGGNDGEAHTNEHFTKEDEAGYGNENGEDEDLQENSAANQSWDAPEEKSENNQSTSAEDPLIESIRSLQAVQEALEEEVQKFREIDTEVVSPEDDSVKCSSASAGITAVDLGLHKSFLSSHSSADETNQAASSSLEFQISSLKQHVNLLESKLEELQGVLATKDSRIVELETALTTGKFPKEESANTLGYKEVEYEIEDLFRQKVEAEVEYLAIAKVMQNLKVGADLQFTLLEEQEKLSENQAQVLNKIIDAESKASVLKNKAEELEKYCGDSLVIEESFLLQKRVCKVSFYLFLQFMMLILFFWFLVSQLSQNSGVVVPT*