AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077900 MtrunA17_Chr1g0187991 76.338 355 24 5 1 299 1 351 3.91e-156 445
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077900 AT1G04230.1 44.558 294 92 8 1 229 1 288 7.38e-50 171
Msa0077900 AT1G04230.2 44.558 294 91 9 1 229 1 287 6.41e-48 166
Msa0077900 AT5G43720.1 45.946 296 90 9 1 231 1 291 1.81e-44 157

Find 119 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAATTCCAATTTGTTTA+TGG 0.071395 1_2:-54972200 Msa0077900:three_prime_UTR
ATCTCTGTTTAGATGAATTT+TGG 0.177579 1_2:+54973670 None:intergenic
AGGAACATATTTCTCATTCT+TGG 0.273222 1_2:+54975196 None:intergenic
TGCAGGAATGATGGATAAAC+TGG 0.294568 1_2:-54972452 Msa0077900:intron
TATTATTGTATTACCAGATA+TGG 0.294749 1_2:-54972142 Msa0077900:three_prime_UTR
CAGTGAGGATGACGGTCTTC+TGG 0.295263 1_2:-54974133 Msa0077900:CDS
AACGGGTGGTTTGAATTTCT+TGG 0.296653 1_2:+54976851 None:intergenic
GAGCAGGCTTCTAGTGCTTC+TGG 0.304491 1_2:-54973925 Msa0077900:CDS
GTTGTTGTCCATAAACAAAT+TGG 0.312485 1_2:+54972192 None:intergenic
TGCGTTCGGCGGATCGGATT+TGG 0.330713 1_2:+54976817 None:intergenic
AGAAGCACAGGTGCAGAAAC+TGG 0.342086 1_2:-54976690 Msa0077900:CDS
TGTAAGATTGATTCATTTGA+AGG 0.344448 1_2:-54971981 Msa0077900:three_prime_UTR
CGTTCAAAACCTTCTTCAAT+AGG 0.346677 1_2:+54972091 None:intergenic
CAAACAAGTTGTCAAGGTTT+GGG 0.346944 1_2:-54973701 Msa0077900:CDS
TCAAACAAGTTGTCAAGGTT+TGG 0.348252 1_2:-54973702 Msa0077900:CDS
GAGCTGGTCCCTGCTCTTGA+AGG 0.354743 1_2:+54973540 None:intergenic
AAATATGTTCCTTTATTTAG+TGG 0.364448 1_2:-54975185 Msa0077900:CDS
GGAACATATTTCTCATTCTT+GGG 0.369244 1_2:+54975197 None:intergenic
CAGTTTATTTGTTCATCAAA+TGG 0.375593 1_2:-54972545 Msa0077900:CDS
GTAAGGGAACCCTCAAGATC+AGG 0.387740 1_2:-54973591 Msa0077900:CDS
CATATATGTACTGACTTGTT+AGG 0.388670 1_2:-54972300 Msa0077900:three_prime_UTR
AGGAAATTACACACCATATC+TGG 0.393462 1_2:+54972129 None:intergenic
GTAAGGGAACCCTCAAGATC+AGG 0.395899 1_2:-54973507 Msa0077900:CDS
TTATCTGTGGCTGCTGCAAC+TGG 0.397239 1_2:-54975101 Msa0077900:CDS
AACCTTGACAACTTGTTTGA+AGG 0.398124 1_2:+54973705 None:intergenic
TGGGCATTGCTATGGCCATT+TGG 0.400600 1_2:-54972432 Msa0077900:CDS
TCATCAGTTCCACTAAATAA+AGG 0.410177 1_2:+54975176 None:intergenic
TTCTCCACCTGCAGGAATGA+TGG 0.414705 1_2:-54972461 Msa0077900:intron
GAGATAGTTGACAAGCGAAA+TGG 0.426687 1_2:-54975149 Msa0077900:CDS
TTGTCAAGGTTTGGGTCTGC+AGG 0.427670 1_2:-54973693 Msa0077900:CDS
TACCTTTCGGAGCATGCGTT+CGG 0.429821 1_2:+54976803 None:intergenic
ATGTTCTGTGGTGGACCTGC+AGG 0.431299 1_2:-54972352 Msa0077900:CDS
AGCGCCATGGCTCACGGCGG+CGG 0.433460 1_2:-54976930 Msa0077900:exon
TTGTATTGGTTGCAGAGAGC+AGG 0.434704 1_2:-54973941 Msa0077900:intron
GCTTCATCACTAGAACTTCC+AGG 0.434881 1_2:+54974084 None:intergenic
GGGGTCTTCATATCTGACCC+TGG 0.446822 1_2:-54972233 Msa0077900:three_prime_UTR
GAGCTGGTCCCTGATCTTGA+GGG 0.447815 1_2:+54973582 None:intergenic
TGGGAGACAAATCATTGAAC+TGG 0.455247 1_2:-54972059 Msa0077900:three_prime_UTR
AAGAACTTGCCTATTGAAGA+AGG 0.456869 1_2:-54972100 Msa0077900:three_prime_UTR
CTGATCATGAATTTAGTTCA+CGG 0.459991 1_2:+54972031 None:intergenic
ACCTTGACAACTTGTTTGAA+GGG 0.465270 1_2:+54973706 None:intergenic
GCAACTGGCAAGGATTTAGA+AGG 0.471858 1_2:-54975086 Msa0077900:intron
TTGTCTTCAGTAGACTACTT+AGG 0.475102 1_2:-54972570 Msa0077900:CDS
ATGACTGGTCCCTGATCTTG+AGG 0.475131 1_2:+54973497 None:intergenic
GTAAGGGAACCTTCAAGAGC+AGG 0.475623 1_2:-54973549 Msa0077900:CDS
GCAGCTCAGACTTCAGAGTA+AGG 0.479250 1_2:-54973608 Msa0077900:CDS
AGATAGTTGACAAGCGAAAT+GGG 0.480235 1_2:-54975148 Msa0077900:CDS
TGAGCTGGTCCCTGATCTTG+AGG 0.482216 1_2:+54973581 None:intergenic
TTGTTTGAAGGGCGAGGAGG+AGG 0.487851 1_2:+54973717 None:intergenic
TTTGCTGTTTGATGCGTAGC+GGG 0.489522 1_2:+54973632 None:intergenic
TGACTGGTCCCTGATCTTGA+GGG 0.490656 1_2:+54973498 None:intergenic
AGGAGGAGGCATCAAAGCTC+TGG 0.493369 1_2:+54973731 None:intergenic
TGGTTTGAATTTCTTGGCGG+TGG 0.495559 1_2:+54976857 None:intergenic
CCTTACTCTGAAGTCTGAGC+TGG 0.495940 1_2:+54973566 None:intergenic
GACACCGCCGCCGTGAGCCA+TGG 0.496302 1_2:+54976926 None:intergenic
CCAGCTCAGACTTTAGAGTA+AGG 0.498575 1_2:-54973524 Msa0077900:CDS
CCAGCTCAGACTTCAGAGTA+AGG 0.500871 1_2:-54973566 Msa0077900:CDS
GCTTCTGGAAAAGCTGTGTC+TGG 0.504121 1_2:-54973910 Msa0077900:CDS
AGCGGAGGTTAGAGAAGCAC+AGG 0.504954 1_2:-54976702 Msa0077900:CDS
AAAAGTAACTCTACAACAGA+TGG 0.517629 1_2:+54972591 None:intergenic
ACAATCAGAAAACCTAATCA+AGG 0.527811 1_2:-54976974 Msa0077900:five_prime_UTR
TGACTTGTTAGGATAGATTG+AGG 0.528078 1_2:-54972289 Msa0077900:three_prime_UTR
CACAAGCCTCGGACAGGTCA+TGG 0.529184 1_2:-54973444 Msa0077900:CDS
CAGTAAAAGAAGCTCCCTGC+AGG 0.530166 1_2:+54972337 None:intergenic
GATGCTCACAAGCCTCGGAC+AGG 0.531903 1_2:-54973450 Msa0077900:CDS
GGGTGGTTTGAATTTCTTGG+CGG 0.533885 1_2:+54976854 None:intergenic
GGAGCATGCGTTCGGCGGAT+CGG 0.538352 1_2:+54976811 None:intergenic
ACTCTGATGCTCACAAGCCT+CGG 0.541640 1_2:-54973404 Msa0077900:CDS
GGGTCTTCATATCTGACCCT+GGG 0.541800 1_2:-54972232 Msa0077900:three_prime_UTR
CTATTGCTTTCTTCATCTCG+AGG 0.546011 1_2:+54976997 None:intergenic
ACTCTGATGCTCACAAGCCT+CGG 0.546671 1_2:-54973455 Msa0077900:CDS
GAAATAGAATATCCCTCCGT+CGG 0.547155 1_2:-54977023 None:intergenic
ATCTCGAGGAACCCGACGGA+GGG 0.548194 1_2:+54977011 None:intergenic
GCCCTTCAAACAAGTTGTCA+AGG 0.549834 1_2:-54973707 Msa0077900:CDS
CCTTACTCTAAAGTCTGAGC+TGG 0.551248 1_2:+54973524 None:intergenic
CTTCATCTCGAGGAACCCGA+CGG 0.555144 1_2:+54977007 None:intergenic
GAAAACAGCGCCATGGCTCA+CGG 0.561570 1_2:-54976936 Msa0077900:exon
GACAACTTGTTTGAAGGGCG+AGG 0.563882 1_2:+54973711 None:intergenic
AAATAGAATATCCCTCCGTC+GGG 0.568977 1_2:-54977022 None:intergenic
GGATAAACTGGGCATTGCTA+TGG 0.570200 1_2:-54972440 Msa0077900:CDS
TGTGCTTCTCTAACCTCCGC+TGG 0.571924 1_2:+54976704 None:intergenic
CGCCGAACGCATGCTCCGAA+AGG 0.581830 1_2:-54976805 Msa0077900:intron
CTTTCGGAGCATGCGTTCGG+CGG 0.585097 1_2:+54976806 None:intergenic
AGGCTTGTGAGCATCAGAGT+TGG 0.585984 1_2:+54973407 None:intergenic
AGGCTTGTGAGCATCAGAGT+TGG 0.585984 1_2:+54973458 None:intergenic
TCAAGATCAGGGACCAGTCA+TGG 0.587180 1_2:-54973495 Msa0077900:CDS
TAAGGGAACCCTCAAGATCA+GGG 0.588906 1_2:-54973506 Msa0077900:CDS
TAAGGGAACCCTCAAGATCA+GGG 0.588906 1_2:-54973590 Msa0077900:CDS
TGTGAAGAAGCTGATCCAAA+TGG 0.588926 1_2:+54972417 None:intergenic
TGTGGCTGCTGCAACTGGCA+AGG 0.589859 1_2:-54975096 Msa0077900:CDS
CGGCGGGGTTGACCCTCTCG+CGG 0.596977 1_2:+54976895 None:intergenic
TGTCAACAAGCGCCGCGAGA+GGG 0.597156 1_2:-54976907 Msa0077900:CDS
CAGCTCAGACTTCAGAGTAA+GGG 0.598053 1_2:-54973607 Msa0077900:CDS
TAAGGGAACCTTCAAGAGCA+GGG 0.607477 1_2:-54973548 Msa0077900:CDS
GCTTAGACTACTACCATGAC+TGG 0.607754 1_2:+54973482 None:intergenic
GTGTCAACAAGCGCCGCGAG+AGG 0.608335 1_2:-54976908 Msa0077900:CDS
ATTTAGTGGAACTGATGATG+CGG 0.619368 1_2:-54975171 Msa0077900:CDS
ACTGGACGGGACATGTTCTG+TGG 0.622245 1_2:-54972364 Msa0077900:CDS
CAGCTCAGACTTTAGAGTAA+GGG 0.622748 1_2:-54973523 Msa0077900:CDS
AACTTGTTTGAAGGGCGAGG+AGG 0.639014 1_2:+54973714 None:intergenic
ATTGCAGAATTTACCAGCGG+AGG 0.639111 1_2:-54976717 Msa0077900:intron
CAGCTCAGACTTCAGAGTAA+GGG 0.639698 1_2:-54973565 Msa0077900:CDS
GGAAGCACTGAAGAAACAGC+AGG 0.640824 1_2:-54976669 Msa0077900:CDS
GGACGGGACATGTTCTGTGG+TGG 0.643991 1_2:-54972361 Msa0077900:CDS
TATTATGTATCAAACAGCGT+GGG 0.644024 1_2:-54972646 Msa0077900:CDS
TTAGGTCTTCTCTTTCTCCG+AGG 0.650734 1_2:+54973387 None:intergenic
TGTTCTGTGGTGGACCTGCA+GGG 0.651190 1_2:-54972351 Msa0077900:CDS
TACTACCGAAAACAGCGCCA+TGG 0.654784 1_2:-54976943 Msa0077900:exon
AATTGACAGACAAAAGTACC+AGG 0.657399 1_2:-54974047 Msa0077900:intron
GATTGAAGAGAGGTTATCTG+TGG 0.668869 1_2:-54975114 Msa0077900:CDS
GAGACTGGCAGTGAGGATGA+CGG 0.672293 1_2:-54974141 Msa0077900:CDS
CATCTCGAGGAACCCGACGG+AGG 0.680902 1_2:+54977010 None:intergenic
GCAGGAATGATGGATAAACT+GGG 0.686471 1_2:-54972451 Msa0077900:intron
AACAGCGCCATGGCTCACGG+CGG 0.693190 1_2:-54976933 Msa0077900:exon
CTACTGCCATGACCTGTCCG+AGG 0.693261 1_2:+54973438 None:intergenic
GTATTATGTATCAAACAGCG+TGG 0.694143 1_2:-54972647 Msa0077900:CDS
TGAATTGCAGAATTTACCAG+CGG 0.705694 1_2:-54976720 Msa0077900:intron
TGCGCAAACAGATTGAAGAG+AGG 0.706610 1_2:-54975124 Msa0077900:CDS
TGTTACAGAGACTGGCAGTG+AGG 0.712205 1_2:-54974148 Msa0077900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTGAATTTATTTATAAAT+AGG + chr1_2:54975866-54975885 None:intergenic 10.0%
!! ACTTAAATATTAAATAAAAC+AGG - chr1_2:54976294-54976313 Msa0077900:intron 10.0%
!! AGCAAGTATAAATAAATATA+AGG + chr1_2:54973082-54973101 None:intergenic 15.0%
!!! TTTTGTCTTTTAAGTTTTTA+AGG - chr1_2:54973324-54973343 Msa0077900:intron 15.0%
!!! TTTGTATTGATTTTAGAATT+AGG - chr1_2:54974059-54974078 Msa0077900:CDS 15.0%
!!! TTGTATTGATTTTAGAATTA+GGG - chr1_2:54974060-54974079 Msa0077900:CDS 15.0%
!! AATAAACTGAAAATAGTTTA+TGG + chr1_2:54974181-54974200 None:intergenic 15.0%
!! TAAAGAAAGATGAAAAATTA+GGG + chr1_2:54974422-54974441 None:intergenic 15.0%
!!! TTCTTTGTAAAATTATTTTG+TGG - chr1_2:54974445-54974464 Msa0077900:intron 15.0%
!!! TCAAAATTAAAAGCTTTTAA+TGG + chr1_2:54975771-54975790 None:intergenic 15.0%
!!! ATTAAATTCCAATTTGTTTA+TGG - chr1_2:54976776-54976795 Msa0077900:intron 15.0%
!! AAAATTATACTATGCTTGTT+TGG - chr1_2:54972555-54972574 Msa0077900:CDS 20.0%
!!! TTTATTTCTATAAGCTCTTA+AGG - chr1_2:54972922-54972941 Msa0077900:intron 20.0%
!!! ATAAATATAAGGCTTTGTTT+TGG + chr1_2:54973071-54973090 None:intergenic 20.0%
!!! AAGACATATTTTTCATTCTT+GGG + chr1_2:54973166-54973185 None:intergenic 20.0%
!!! AAAGACATATTTTTCATTCT+TGG + chr1_2:54973167-54973186 None:intergenic 20.0%
!!! GTTTTTGACAAATTATATCT+AGG - chr1_2:54973478-54973497 Msa0077900:CDS 20.0%
!! AACTTATAACTTATATGATG+AGG - chr1_2:54973646-54973665 Msa0077900:CDS 20.0%
!! ACTTATAACTTATATGATGA+GGG - chr1_2:54973647-54973666 Msa0077900:CDS 20.0%
!!! AAATATGTTCCTTTATTTAG+TGG - chr1_2:54973791-54973810 Msa0077900:intron 20.0%
!!! ATTAAGTTGTTTATGTAAAC+AGG - chr1_2:54974344-54974363 Msa0077900:intron 20.0%
!!! TTAAGTTGTTTATGTAAACA+GGG - chr1_2:54974345-54974364 Msa0077900:intron 20.0%
!! AAAGAAAGATGAAAAATTAG+GGG + chr1_2:54974421-54974440 None:intergenic 20.0%
!! GTAAAGAAAGATGAAAAATT+AGG + chr1_2:54974423-54974442 None:intergenic 20.0%
!!! TTTATCACTTTCTTTTATCT+TGG - chr1_2:54974585-54974604 Msa0077900:intron 20.0%
!!! AGTTATCTCAATAAGTTTTT+TGG - chr1_2:54974979-54974998 Msa0077900:intron 20.0%
!!! AGTGGATAAATTTTTTGTAT+TGG - chr1_2:54975021-54975040 Msa0077900:intron 20.0%
!! TAAACTAAAAGATATGAGAA+AGG + chr1_2:54975914-54975933 None:intergenic 20.0%
!!! TTTCAATTTTGCATTTAAAG+TGG - chr1_2:54975940-54975959 Msa0077900:intron 20.0%
!! CACATTCAAATAGTTATTAT+AGG + chr1_2:54976026-54976045 None:intergenic 20.0%
!! CTATAATAACTATTTGAATG+TGG - chr1_2:54976024-54976043 Msa0077900:intron 20.0%
!! ACAACAATAAATTGGAAATA+AGG + chr1_2:54976183-54976202 None:intergenic 20.0%
!! ATAAATGTGCATTACAATTA+GGG + chr1_2:54976496-54976515 None:intergenic 20.0%
!! AATAAATGTGCATTACAATT+AGG + chr1_2:54976497-54976516 None:intergenic 20.0%
!!! ATTTAATTTTAAGTAACCCA+GGG + chr1_2:54976763-54976782 None:intergenic 20.0%
!!! AATTTAATTTTAAGTAACCC+AGG + chr1_2:54976764-54976783 None:intergenic 20.0%
!! TATTATTGTATTACCAGATA+TGG - chr1_2:54976834-54976853 Msa0077900:CDS 20.0%
! GAGAATAAATAACCGAATTA+GGG + chr1_2:54972229-54972248 None:intergenic 25.0%
! AGAGAATAAATAACCGAATT+AGG + chr1_2:54972230-54972249 None:intergenic 25.0%
! ACAAGATCTTCAATATGTTA+TGG - chr1_2:54972505-54972524 Msa0077900:intron 25.0%
!! AATAAGTTGAAAACAGCTTA+AGG + chr1_2:54972662-54972681 None:intergenic 25.0%
! ATTAAGCTGTATATCTGAAT+AGG - chr1_2:54972777-54972796 Msa0077900:intron 25.0%
! TTAAGCTGTATATCTGAATA+GGG - chr1_2:54972778-54972797 Msa0077900:intron 25.0%
!! GAGTTTATGGAAACATTTTA+TGG - chr1_2:54972874-54972893 Msa0077900:intron 25.0%
! TCTTATAGCCTATATGAAAA+TGG - chr1_2:54972961-54972980 Msa0077900:intron 25.0%
!! AAAGCAAACCATTTTCATAT+AGG + chr1_2:54972972-54972991 None:intergenic 25.0%
!! AAATATGTCTTTCAGTGTTT+TGG - chr1_2:54973175-54973194 Msa0077900:intron 25.0%
!! AATATGTCTTTCAGTGTTTT+GGG - chr1_2:54973176-54973195 Msa0077900:intron 25.0%
! GGTGACAAAAAATATGTTTA+GGG - chr1_2:54973197-54973216 Msa0077900:intron 25.0%
! AAATTATATCTAGGTCTGTT+TGG - chr1_2:54973487-54973506 Msa0077900:CDS 25.0%
! ATTAGTTGAAAACAGCTTAT+GGG + chr1_2:54973593-54973612 None:intergenic 25.0%
! AATTAGTTGAAAACAGCTTA+TGG + chr1_2:54973594-54973613 None:intergenic 25.0%
! ATTAAGCTGTTTATCTAAAC+AGG - chr1_2:54973680-54973699 Msa0077900:CDS 25.0%
! TTAAGCTGTTTATCTAAACA+GGG - chr1_2:54973681-54973700 Msa0077900:CDS 25.0%
!! TTGTTGTTGATGTATTATGT+TGG - chr1_2:54973956-54973975 Msa0077900:intron 25.0%
!!! TTTTAGAATTAGGGTTTGTT+TGG - chr1_2:54974069-54974088 Msa0077900:CDS 25.0%
!!! TAAAATAAAGCTGTTTTCGT+AGG + chr1_2:54974227-54974246 None:intergenic 25.0%
! ATCATTAGTGTAAATGCTAT+AGG - chr1_2:54974285-54974304 Msa0077900:intron 25.0%
!! CTATGTGACTTTACAATTTT+TGG - chr1_2:54974499-54974518 Msa0077900:intron 25.0%
! TAAACACAGAATATTAAGGA+AGG + chr1_2:54974569-54974588 None:intergenic 25.0%
! GTGATAAACACAGAATATTA+AGG + chr1_2:54974573-54974592 None:intergenic 25.0%
! AATAGAAACATTATATGCAG+GGG + chr1_2:54974646-54974665 None:intergenic 25.0%
! CAATAGAAACATTATATGCA+GGG + chr1_2:54974647-54974666 None:intergenic 25.0%
!! TTGTTGACATTTTATCAAAC+AGG + chr1_2:54974795-54974814 None:intergenic 25.0%
! ATTATATCGATGAAAAGTAG+TGG - chr1_2:54975003-54975022 Msa0077900:intron 25.0%
! ATAATGTGTGACTATCTATT+CGG + chr1_2:54975176-54975195 None:intergenic 25.0%
!! ATCTCTGTTTAGATGAATTT+TGG + chr1_2:54975309-54975328 None:intergenic 25.0%
! TAATTACCATTCATTCTAAC+TGG - chr1_2:54975679-54975698 Msa0077900:intron 25.0%
!!! AAAGTTGAGACTTTTTTAAG+TGG - chr1_2:54975729-54975748 Msa0077900:intron 25.0%
! TCACTTATGATTGTATGATA+AGG - chr1_2:54975795-54975814 Msa0077900:intron 25.0%
! AAAAGATATGAGAAAGGTAA+GGG + chr1_2:54975908-54975927 None:intergenic 25.0%
! TAAAAGATATGAGAAAGGTA+AGG + chr1_2:54975909-54975928 None:intergenic 25.0%
! TTATTATAGGCATTTACACA+TGG + chr1_2:54976013-54976032 None:intergenic 25.0%
!! TTTCCAATTTATTGTTGTTG+TGG - chr1_2:54976185-54976204 Msa0077900:intron 25.0%
! CAGTTTATTTGTTCATCAAA+TGG - chr1_2:54976431-54976450 Msa0077900:intron 25.0%
!!! TCTTACAATTACGTTTTAAC+TGG - chr1_2:54976594-54976613 Msa0077900:intron 25.0%
!!! AGATTAATAGCTTTTGACTA+TGG - chr1_2:54976722-54976741 Msa0077900:intron 25.0%
!!! GATTAATAGCTTTTGACTAT+GGG - chr1_2:54976723-54976742 Msa0077900:intron 25.0%
!!! ATTAATAGCTTTTGACTATG+GGG - chr1_2:54976724-54976743 Msa0077900:intron 25.0%
!! TGTAAGATTGATTCATTTGA+AGG - chr1_2:54976995-54977014 Msa0077900:five_prime_UTR 25.0%
ACAATCAGAAAACCTAATCA+AGG - chr1_2:54972002-54972021 Msa0077900:three_prime_UTR 30.0%
! AGTATTTTGCTTCCTTGATT+AGG + chr1_2:54972017-54972036 None:intergenic 30.0%
!!! ATTTGGTTTTTGAGAGAAAC+GGG + chr1_2:54972145-54972164 None:intergenic 30.0%
!!! GATTTGGTTTTTGAGAGAAA+CGG + chr1_2:54972146-54972165 None:intergenic 30.0%
AGAAGATTAAGTTCTTTGAG+AGG - chr1_2:54972378-54972397 Msa0077900:CDS 30.0%
TTGAGAGGAGAAAAATTGAA+CGG - chr1_2:54972393-54972412 Msa0077900:CDS 30.0%
TATACTATGCTTGTTTGGAT+TGG - chr1_2:54972560-54972579 Msa0077900:CDS 30.0%
GCTTATTCGAGCTTATTTAT+TGG - chr1_2:54972582-54972601 Msa0077900:CDS 30.0%
!! CTTATTTTCATAAGCTCTCT+AGG - chr1_2:54972676-54972695 Msa0077900:intron 30.0%
TAAGCTGTATATCTGAATAG+GGG - chr1_2:54972779-54972798 Msa0077900:intron 30.0%
AAACTGAAAAACACAGCTTA+TGG + chr1_2:54972905-54972924 None:intergenic 30.0%
! ACTTGCTGCTGTAAATAAAT+AGG - chr1_2:54973095-54973114 Msa0077900:intron 30.0%
GGGTGACAAAAAATATGTTT+AGG - chr1_2:54973196-54973215 Msa0077900:intron 30.0%
! AAAATATGTTTAGGGTCTGT+CGG - chr1_2:54973205-54973224 Msa0077900:intron 30.0%
! AGGATAGCTTATAGCTTTTA+TGG - chr1_2:54973344-54973363 Msa0077900:intron 30.0%
TAAGCTGTTTATCTAAACAG+GGG - chr1_2:54973682-54973701 Msa0077900:CDS 30.0%
GGAACATATTTCTCATTCTT+GGG + chr1_2:54973782-54973801 None:intergenic 30.0%
AGGAACATATTTCTCATTCT+TGG + chr1_2:54973783-54973802 None:intergenic 30.0%
TCATCAGTTCCACTAAATAA+AGG + chr1_2:54973803-54973822 None:intergenic 30.0%
!! TTTATTTTCATAAGCTCTCC+AGG - chr1_2:54974195-54974214 Msa0077900:intron 30.0%
! ATCAATTGATTGAAAGTGCA+GGG + chr1_2:54974537-54974556 None:intergenic 30.0%
! CACTTTCTTTTATCTTGGTT+TGG - chr1_2:54974590-54974609 Msa0077900:intron 30.0%
GCAATAGAAACATTATATGC+AGG + chr1_2:54974648-54974667 None:intergenic 30.0%
AAACCAAGCACTTGAAATAA+GGG + chr1_2:54974677-54974696 None:intergenic 30.0%
AAAACCAAGCACTTGAAATA+AGG + chr1_2:54974678-54974697 None:intergenic 30.0%
! TGACATTTTATCAAACAGGA+AGG + chr1_2:54974791-54974810 None:intergenic 30.0%
!!! GATGATGATTTTTTTCTTCC+TGG - chr1_2:54974874-54974893 Msa0077900:intron 30.0%
!!! AGCAAAGATGTTTTAGTACT+TGG - chr1_2:54974954-54974973 Msa0077900:intron 30.0%
!!! GCAAAGATGTTTTAGTACTT+GGG - chr1_2:54974955-54974974 Msa0077900:intron 30.0%
ATTGCTAGTTGTTACTCTTA+CGG + chr1_2:54975122-54975141 None:intergenic 30.0%
AAATCTGCCTCTACAAAAAT+GGG + chr1_2:54975222-54975241 None:intergenic 30.0%
AAGTTTCCAGTTAGAATGAA+TGG + chr1_2:54975688-54975707 None:intergenic 30.0%
TAAGGATTTACTCTTATCAC+TGG - chr1_2:54975813-54975832 Msa0077900:intron 30.0%
AATAGGAATGCATTTCAAGA+CGG + chr1_2:54975849-54975868 None:intergenic 30.0%
!! CAATTTTGCATTTAAAGTGG+TGG - chr1_2:54975943-54975962 Msa0077900:intron 30.0%
AATCATGAGAATATGATGAC+AGG - chr1_2:54976109-54976128 Msa0077900:intron 30.0%
TTGCCACAACAACAATAAAT+TGG + chr1_2:54976191-54976210 None:intergenic 30.0%
GATAGTTACTGTGTTCAATT+TGG + chr1_2:54976240-54976259 None:intergenic 30.0%
TATTATGTATCAAACAGCGT+GGG - chr1_2:54976330-54976349 Msa0077900:intron 30.0%
AAAAGTAACTCTACAACAGA+TGG + chr1_2:54976388-54976407 None:intergenic 30.0%
!!! ACAATTACGTTTTAACTGGA+CGG - chr1_2:54976598-54976617 Msa0077900:intron 30.0%
!! CATATATGTACTGACTTGTT+AGG - chr1_2:54976676-54976695 Msa0077900:CDS 30.0%
GTTGTTGTCCATAAACAAAT+TGG + chr1_2:54976787-54976806 None:intergenic 30.0%
! ATAGGCAAGTTCTTTTGTAA+AGG + chr1_2:54976870-54976889 None:intergenic 30.0%
! CTGATCATGAATTTAGTTCA+CGG + chr1_2:54976948-54976967 None:intergenic 30.0%
! ATTAAGGGGGTTTTACCTTT+CGG + chr1_2:54972189-54972208 None:intergenic 35.0%
TGAATTGCAGAATTTACCAG+CGG - chr1_2:54972256-54972275 Msa0077900:three_prime_UTR 35.0%
AGACAGTTTGATTGAGCTTA+TGG - chr1_2:54972619-54972638 Msa0077900:CDS 35.0%
TCCACTAAATAAGTCCAAAC+AGG + chr1_2:54972814-54972833 None:intergenic 35.0%
CACACAAGTACTTATGTTAG+TGG + chr1_2:54972843-54972862 None:intergenic 35.0%
TAAGTACTTGTGTGACAGTT+TGG - chr1_2:54972849-54972868 Msa0077900:intron 35.0%
AAGTACTTGTGTGACAGTTT+GGG - chr1_2:54972850-54972869 Msa0077900:intron 35.0%
! AAATATGTTTAGGGTCTGTC+GGG - chr1_2:54973206-54973225 Msa0077900:intron 35.0%
AAATTGTTTGAGAGAGCTAG+TGG - chr1_2:54973270-54973289 Msa0077900:intron 35.0%
! ATTTAGTGGAACTGATGATG+CGG - chr1_2:54973805-54973824 Msa0077900:intron 35.0%
AGATAGTTGACAAGCGAAAT+GGG - chr1_2:54973828-54973847 Msa0077900:intron 35.0%
TAACTCAAGTGGTTGATCTA+GGG + chr1_2:54973997-54974016 None:intergenic 35.0%
TATCCAAAGTGTAACTCAAG+TGG + chr1_2:54974008-54974027 None:intergenic 35.0%
TACTAACATAAGCACTTGTG+AGG - chr1_2:54974113-54974132 Msa0077900:CDS 35.0%
ACTAACATAAGCACTTGTGA+GGG - chr1_2:54974114-54974133 Msa0077900:CDS 35.0%
GTTTATGGACATACCATAAG+AGG + chr1_2:54974166-54974185 None:intergenic 35.0%
TGAAAAATTAGGGGTTGCAT+TGG + chr1_2:54974412-54974431 None:intergenic 35.0%
! GATCAATTGATTGAAAGTGC+AGG + chr1_2:54974538-54974557 None:intergenic 35.0%
! TTACCCTTATTTCAAGTGCT+TGG - chr1_2:54974671-54974690 Msa0077900:intron 35.0%
!!! TTCAAGTGCTTGGTTTTAGT+TGG - chr1_2:54974681-54974700 Msa0077900:intron 35.0%
! TCTGTTTGAAATTGGTGACT+GGG - chr1_2:54974716-54974735 Msa0077900:intron 35.0%
! CATTTTATCAAACAGGAAGG+AGG + chr1_2:54974788-54974807 None:intergenic 35.0%
!! AATTGACAGACAAAAGTACC+AGG - chr1_2:54974929-54974948 Msa0077900:intron 35.0%
!!! AACCTGATTTTTTTCATCGC+TGG + chr1_2:54975097-54975116 None:intergenic 35.0%
!! ATCTTAGCCCATTTTTGTAG+AGG - chr1_2:54975212-54975231 Msa0077900:intron 35.0%
GAAATCTGCCTCTACAAAAA+TGG + chr1_2:54975223-54975242 None:intergenic 35.0%
! ACCTTGACAACTTGTTTGAA+GGG + chr1_2:54975273-54975292 None:intergenic 35.0%
! AACCTTGACAACTTGTTTGA+AGG + chr1_2:54975274-54975293 None:intergenic 35.0%
TCAAACAAGTTGTCAAGGTT+TGG - chr1_2:54975274-54975293 Msa0077900:intron 35.0%
CAAACAAGTTGTCAAGGTTT+GGG - chr1_2:54975275-54975294 Msa0077900:intron 35.0%
ACCTAAGAAGAAAAAGAAGC+AGG - chr1_2:54975606-54975625 Msa0077900:intron 35.0%
! ACCTGCTTCTTTTTCTTCTT+AGG + chr1_2:54975610-54975629 None:intergenic 35.0%
! CACTTATGTCTTTTGTGTTC+AGG - chr1_2:54975881-54975900 Msa0077900:intron 35.0%
TACTGTCTTCCTTGAAAGAA+AGG - chr1_2:54976070-54976089 Msa0077900:intron 35.0%
ACTGTCTTCCTTGAAAGAAA+GGG - chr1_2:54976071-54976090 Msa0077900:intron 35.0%
TTCATATCCCCTTTCTTTCA+AGG + chr1_2:54976082-54976101 None:intergenic 35.0%
!! ATAAGGTGTCAAGTGTGTTT+TGG + chr1_2:54976166-54976185 None:intergenic 35.0%
GTATTATGTATCAAACAGCG+TGG - chr1_2:54976329-54976348 Msa0077900:intron 35.0%
TTGTCTTCAGTAGACTACTT+AGG - chr1_2:54976406-54976425 Msa0077900:intron 35.0%
!!! CAATTACGTTTTAACTGGAC+GGG - chr1_2:54976599-54976618 Msa0077900:intron 35.0%
!! TGACTTGTTAGGATAGATTG+AGG - chr1_2:54976687-54976706 Msa0077900:CDS 35.0%
AGGAAATTACACACCATATC+TGG + chr1_2:54976850-54976869 None:intergenic 35.0%
AAGAACTTGCCTATTGAAGA+AGG - chr1_2:54976876-54976895 Msa0077900:CDS 35.0%
CGTTCAAAACCTTCTTCAAT+AGG + chr1_2:54976888-54976907 None:intergenic 35.0%
CTATTGCTTTCTTCATCTCG+AGG + chr1_2:54971982-54972001 None:intergenic 40.0%
AACGGGTGGTTTGAATTTCT+TGG + chr1_2:54972128-54972147 None:intergenic 40.0%
AGTGTAAGGGTTGGGATTAA+GGG + chr1_2:54972204-54972223 None:intergenic 40.0%
TAGTGTAAGGGTTGGGATTA+AGG + chr1_2:54972205-54972224 None:intergenic 40.0%
! TTAGGGTTAGTGTAAGGGTT+GGG + chr1_2:54972212-54972231 None:intergenic 40.0%
! ATTAGGGTTAGTGTAAGGGT+TGG + chr1_2:54972213-54972232 None:intergenic 40.0%
! CCGAATTAGGGTTAGTGTAA+GGG + chr1_2:54972217-54972236 None:intergenic 40.0%
CCCTTACACTAACCCTAATT+CGG - chr1_2:54972214-54972233 Msa0077900:three_prime_UTR 40.0%
! ACCGAATTAGGGTTAGTGTA+AGG + chr1_2:54972218-54972237 None:intergenic 40.0%
GTTTGATTGAGCTTATGGAC+CGG - chr1_2:54972624-54972643 Msa0077900:CDS 40.0%
CTTAAGGTCATGTCATTAGC+CGG + chr1_2:54972646-54972665 None:intergenic 40.0%
GCCTGTTTGGACTTATTTAG+TGG - chr1_2:54972810-54972829 Msa0077900:intron 40.0%
TGACAGTTTGGGAGAGTTTA+TGG - chr1_2:54972861-54972880 Msa0077900:intron 40.0%
! AATTTCCCAAGCGCTTTTGT+CGG + chr1_2:54973255-54973274 None:intergenic 40.0%
! CTAATTTTCGCAAGCTGTCT+AGG - chr1_2:54973608-54973627 Msa0077900:CDS 40.0%
GAGATAGTTGACAAGCGAAA+TGG - chr1_2:54973827-54973846 Msa0077900:intron 40.0%
GATTGAAGAGAGGTTATCTG+TGG - chr1_2:54973862-54973881 Msa0077900:intron 40.0%
GTAACTCAAGTGGTTGATCT+AGG + chr1_2:54973998-54974017 None:intergenic 40.0%
CAACCACTTGAGTTACACTT+TGG - chr1_2:54974002-54974021 Msa0077900:intron 40.0%
TTGTGAGGGAGACTACTTTA+GGG - chr1_2:54974128-54974147 Msa0077900:CDS 40.0%
! AGACTACTTTAGGGAGCTTA+AGG - chr1_2:54974137-54974156 Msa0077900:CDS 40.0%
GAGCTTAAGGAAACCTCTTA+TGG - chr1_2:54974150-54974169 Msa0077900:intron 40.0%
! TGTTTTCGTAGGAACTATCC+TGG + chr1_2:54974216-54974235 None:intergenic 40.0%
GGCGGATGAAAAAATTATCC+AGG + chr1_2:54974625-54974644 None:intergenic 40.0%
AGAAACATTATATGCAGGGG+CGG + chr1_2:54974643-54974662 None:intergenic 40.0%
! AGCTGAGCTCTGTTTGAAAT+TGG - chr1_2:54974708-54974727 Msa0077900:intron 40.0%
! CTCTGTTTGAAATTGGTGAC+TGG - chr1_2:54974715-54974734 Msa0077900:intron 40.0%
! GGAAGGAGGCATAAATACAA+AGG + chr1_2:54974774-54974793 None:intergenic 40.0%
CTAAAACATCTTTGCTCACC+TGG + chr1_2:54974950-54974969 None:intergenic 40.0%
GTCCAGCGATGAAAAAAATC+AGG - chr1_2:54975092-54975111 Msa0077900:CDS 40.0%
!!! TTTTGCTGTTTGATGCGTAG+CGG + chr1_2:54975348-54975367 None:intergenic 40.0%
!! CAGCTCAGACTTTAGAGTAA+GGG - chr1_2:54975453-54975472 Msa0077900:intron 40.0%
CTGTCTTCCTTGAAAGAAAG+GGG - chr1_2:54976072-54976091 Msa0077900:intron 40.0%
AGTTAGCTCAAGCTTTACTG+TGG - chr1_2:54976268-54976287 Msa0077900:intron 40.0%
GCATTACAATTAGGGACATC+AGG + chr1_2:54976488-54976507 None:intergenic 40.0%
AGTTTATCCATCATTCCTGC+AGG + chr1_2:54976525-54976544 None:intergenic 40.0%
!! TGCAGGAATGATGGATAAAC+TGG - chr1_2:54976524-54976543 Msa0077900:intron 40.0%
!! GCAGGAATGATGGATAAACT+GGG - chr1_2:54976525-54976544 Msa0077900:intron 40.0%
TGTGAAGAAGCTGATCCAAA+TGG + chr1_2:54976562-54976581 None:intergenic 40.0%
!! GTTTTGAACGAGCTGCATAT+GGG - chr1_2:54976898-54976917 Msa0077900:CDS 40.0%
TGGGAGACAAATCATTGAAC+TGG - chr1_2:54976917-54976936 Msa0077900:CDS 40.0%
! GGTGGTTTTTCTACGGTTTG+CGG + chr1_2:54972104-54972123 None:intergenic 45.0%
! TCTTGGCGGTGGTTTTTCTA+CGG + chr1_2:54972111-54972130 None:intergenic 45.0%
TGGTTTGAATTTCTTGGCGG+TGG + chr1_2:54972122-54972141 None:intergenic 45.0%
GGGTGGTTTGAATTTCTTGG+CGG + chr1_2:54972125-54972144 None:intergenic 45.0%
!! TGGTTTTTGAGAGAAACGGG+TGG + chr1_2:54972142-54972161 None:intergenic 45.0%
TGTAAGGGTTGGGATTAAGG+GGG + chr1_2:54972202-54972221 None:intergenic 45.0%
GTGTAAGGGTTGGGATTAAG+GGG + chr1_2:54972203-54972222 None:intergenic 45.0%
ATTGCAGAATTTACCAGCGG+AGG - chr1_2:54972259-54972278 Msa0077900:three_prime_UTR 45.0%
ATATCTTACGTTCCACAGCG+AGG + chr1_2:54972346-54972365 None:intergenic 45.0%
AGCTTCTTCGTCGTCTTCTT+CGG - chr1_2:54972445-54972464 Msa0077900:CDS 45.0%
TTAAGCGAAGCAAGCTGATC+AGG + chr1_2:54972485-54972504 None:intergenic 45.0%
AGGGGTTTATACTGCCTGTT+TGG - chr1_2:54972797-54972816 Msa0077900:intron 45.0%
!! TATCTACCGACAAAAGCGCT+TGG - chr1_2:54973246-54973265 Msa0077900:intron 45.0%
!! ATCTACCGACAAAAGCGCTT+GGG - chr1_2:54973247-54973266 Msa0077900:intron 45.0%
TCAGCACTTGTGAGACAGTT+TGG - chr1_2:54973539-54973558 Msa0077900:CDS 45.0%
TGCGCAAACAGATTGAAGAG+AGG - chr1_2:54973852-54973871 Msa0077900:intron 45.0%
GCAACTGGCAAGGATTTAGA+AGG - chr1_2:54973890-54973909 Msa0077900:CDS 45.0%
ACTGGCAAGGATTTAGAAGG+TGG - chr1_2:54973893-54973912 Msa0077900:CDS 45.0%
CTTGTGAGGGAGACTACTTT+AGG - chr1_2:54974127-54974146 Msa0077900:CDS 45.0%
TAAACAGGGCCATAGAACCA+GGG - chr1_2:54974359-54974378 Msa0077900:intron 45.0%
! TGTGCTACTGTTACAGAGAC+TGG - chr1_2:54974820-54974839 Msa0077900:intron 45.0%
GCTTCATCACTAGAACTTCC+AGG + chr1_2:54974895-54974914 None:intergenic 45.0%
!! TTGTATTGGTTGCAGAGAGC+AGG - chr1_2:54975035-54975054 Msa0077900:intron 45.0%
GCCCTTCAAACAAGTTGTCA+AGG - chr1_2:54975269-54975288 Msa0077900:intron 45.0%
!! TTTGCTGTTTGATGCGTAGC+GGG + chr1_2:54975347-54975366 None:intergenic 45.0%
CAGCTCAGACTTCAGAGTAA+GGG - chr1_2:54975369-54975388 Msa0077900:intron 45.0%
TAAGGGAACCCTCAAGATCA+GGG - chr1_2:54975386-54975405 Msa0077900:intron 45.0%
CAGCTCAGACTTCAGAGTAA+GGG - chr1_2:54975369-54975388 Msa0077900:intron 45.0%
TAAGGGAACCTTCAAGAGCA+GGG - chr1_2:54975428-54975447 Msa0077900:intron 45.0%
!! CCTTACTCTAAAGTCTGAGC+TGG + chr1_2:54975455-54975474 None:intergenic 45.0%
!! CCAGCTCAGACTTTAGAGTA+AGG - chr1_2:54975452-54975471 Msa0077900:intron 45.0%
TAAGGGAACCCTCAAGATCA+GGG - chr1_2:54975386-54975405 Msa0077900:intron 45.0%
GCTTAGACTACTACCATGAC+TGG + chr1_2:54975497-54975516 None:intergenic 45.0%
TTAGGTCTTCTCTTTCTCCG+AGG + chr1_2:54975592-54975611 None:intergenic 45.0%
GTTGTTGTGGCAACTACGTT+TGG - chr1_2:54976198-54976217 Msa0077900:intron 45.0%
CACATTTATTCTCCACCTGC+AGG - chr1_2:54976507-54976526 Msa0077900:intron 45.0%
TTATCCATCATTCCTGCAGG+TGG + chr1_2:54976522-54976541 None:intergenic 45.0%
! GGATAAACTGGGCATTGCTA+TGG - chr1_2:54976536-54976555 Msa0077900:intron 45.0%
!!! GGTTTTGAACGAGCTGCATA+TGG - chr1_2:54976897-54976916 Msa0077900:CDS 45.0%
!!! TTAATTTTTTGTTATAAAAA+TGG - chr1_2:54973383-54973402 Msa0077900:CDS 5.0%
TACTACCGAAAACAGCGCCA+TGG - chr1_2:54972033-54972052 Msa0077900:three_prime_UTR 50.0%
! TTTTTCTACGGTTTGCGGCG+GGG + chr1_2:54972099-54972118 None:intergenic 50.0%
! GTTTTTCTACGGTTTGCGGC+GGG + chr1_2:54972100-54972119 None:intergenic 50.0%
! GGTTTTTCTACGGTTTGCGG+CGG + chr1_2:54972101-54972120 None:intergenic 50.0%
TACCTTTCGGAGCATGCGTT+CGG + chr1_2:54972176-54972195 None:intergenic 50.0%
! AGAAGCACAGGTGCAGAAAC+TGG - chr1_2:54972286-54972305 Msa0077900:three_prime_UTR 50.0%
!! GGAAGCACTGAAGAAACAGC+AGG - chr1_2:54972307-54972326 Msa0077900:exon 50.0%
TTGAGAGAGCTAGTGGAGAC+AGG - chr1_2:54973277-54973296 Msa0077900:intron 50.0%
TTATCTGTGGCTGCTGCAAC+TGG - chr1_2:54973875-54973894 Msa0077900:intron 50.0%
GTAAACAGGGCCATAGAACC+AGG - chr1_2:54974358-54974377 Msa0077900:intron 50.0%
AAACAGGGCCATAGAACCAG+GGG - chr1_2:54974360-54974379 Msa0077900:intron 50.0%
!! TTGGTTTGGTTGTGCACTCC+TGG - chr1_2:54974604-54974623 Msa0077900:intron 50.0%
TGTTACAGAGACTGGCAGTG+AGG - chr1_2:54974828-54974847 Msa0077900:intron 50.0%
! GCTTCTGGAAAAGCTGTGTC+TGG - chr1_2:54975066-54975085 Msa0077900:intron 50.0%
! AACTTGTTTGAAGGGCGAGG+AGG + chr1_2:54975265-54975284 None:intergenic 50.0%
! GACAACTTGTTTGAAGGGCG+AGG + chr1_2:54975268-54975287 None:intergenic 50.0%
TTGTCAAGGTTTGGGTCTGC+AGG - chr1_2:54975283-54975302 Msa0077900:intron 50.0%
GCAGCTCAGACTTCAGAGTA+AGG - chr1_2:54975368-54975387 Msa0077900:intron 50.0%
GTAAGGGAACCCTCAAGATC+AGG - chr1_2:54975385-54975404 Msa0077900:intron 50.0%
!! CCTTACTCTGAAGTCTGAGC+TGG + chr1_2:54975371-54975390 None:intergenic 50.0%
CCAGCTCAGACTTCAGAGTA+AGG - chr1_2:54975410-54975429 Msa0077900:intron 50.0%
GTAAGGGAACCTTCAAGAGC+AGG - chr1_2:54975427-54975446 Msa0077900:intron 50.0%
GTAAGGGAACCCTCAAGATC+AGG - chr1_2:54975385-54975404 Msa0077900:intron 50.0%
! TGACTGGTCCCTGATCTTGA+GGG + chr1_2:54975481-54975500 None:intergenic 50.0%
! ATGACTGGTCCCTGATCTTG+AGG + chr1_2:54975482-54975501 None:intergenic 50.0%
TCAAGATCAGGGACCAGTCA+TGG - chr1_2:54975481-54975500 Msa0077900:intron 50.0%
AGGCTTGTGAGCATCAGAGT+TGG + chr1_2:54975521-54975540 None:intergenic 50.0%
ACTCTGATGCTCACAAGCCT+CGG - chr1_2:54975521-54975540 Msa0077900:intron 50.0%
AGGCTTGTGAGCATCAGAGT+TGG + chr1_2:54975521-54975540 None:intergenic 50.0%
ACTCTGATGCTCACAAGCCT+CGG - chr1_2:54975521-54975540 Msa0077900:intron 50.0%
TTCTCCACCTGCAGGAATGA+TGG - chr1_2:54976515-54976534 Msa0077900:intron 50.0%
! TGGGCATTGCTATGGCCATT+TGG - chr1_2:54976544-54976563 Msa0077900:intron 50.0%
CAGTAAAAGAAGCTCCCTGC+AGG + chr1_2:54976642-54976661 None:intergenic 50.0%
! CTGCAGGGAGCTTCTTTTAC+TGG - chr1_2:54976640-54976659 Msa0077900:intron 50.0%
GGGTCTTCATATCTGACCCT+GGG - chr1_2:54976744-54976763 Msa0077900:intron 50.0%
CTTCATCTCGAGGAACCCGA+CGG + chr1_2:54971972-54971991 None:intergenic 55.0%
!! GTGAGCCATGGCGCTGTTTT+CGG + chr1_2:54972041-54972060 None:intergenic 55.0%
GAAAACAGCGCCATGGCTCA+CGG - chr1_2:54972040-54972059 Msa0077900:three_prime_UTR 55.0%
TGTGCTTCTCTAACCTCCGC+TGG + chr1_2:54972275-54972294 None:intergenic 55.0%
! AGCGGAGGTTAGAGAAGCAC+AGG - chr1_2:54972274-54972293 Msa0077900:three_prime_UTR 55.0%
TATTCACACTCGCCTCGCTG+TGG - chr1_2:54972331-54972350 Msa0077900:CDS 55.0%
GAGACTGGCAGTGAGGATGA+CGG - chr1_2:54974835-54974854 Msa0077900:intron 55.0%
! CAGTGAGGATGACGGTCTTC+TGG - chr1_2:54974843-54974862 Msa0077900:intron 55.0%
GAGCAGGCTTCTAGTGCTTC+TGG - chr1_2:54975051-54975070 Msa0077900:intron 55.0%
!! AGGAGGAGGCATCAAAGCTC+TGG + chr1_2:54975248-54975267 None:intergenic 55.0%
TTGTTTGAAGGGCGAGGAGG+AGG + chr1_2:54975262-54975281 None:intergenic 55.0%
GAGCTGGTCCCTGATCTTGA+GGG + chr1_2:54975397-54975416 None:intergenic 55.0%
TGAGCTGGTCCCTGATCTTG+AGG + chr1_2:54975398-54975417 None:intergenic 55.0%
ACTGGACGGGACATGTTCTG+TGG - chr1_2:54976612-54976631 Msa0077900:intron 55.0%
!! ATGTTCTGTGGTGGACCTGC+AGG - chr1_2:54976624-54976643 Msa0077900:intron 55.0%
!! TGTTCTGTGGTGGACCTGCA+GGG - chr1_2:54976625-54976644 Msa0077900:intron 55.0%
GGGGTCTTCATATCTGACCC+TGG - chr1_2:54976743-54976762 Msa0077900:intron 55.0%
ATCTCGAGGAACCCGACGGA+GGG + chr1_2:54971968-54971987 None:intergenic 60.0%
! TGTCAACAAGCGCCGCGAGA+GGG - chr1_2:54972069-54972088 Msa0077900:three_prime_UTR 60.0%
TGCGTTCGGCGGATCGGATT+TGG + chr1_2:54972162-54972181 None:intergenic 60.0%
CTTTCGGAGCATGCGTTCGG+CGG + chr1_2:54972173-54972192 None:intergenic 60.0%
TGTGGCTGCTGCAACTGGCA+AGG - chr1_2:54973880-54973899 Msa0077900:intron 60.0%
!! TGGCTCCACCCCTGGTTCTA+TGG + chr1_2:54974371-54974390 None:intergenic 60.0%
TAGAACCAGGGGTGGAGCCA+AGG - chr1_2:54974371-54974390 Msa0077900:intron 60.0%
AGAACCAGGGGTGGAGCCAA+GGG - chr1_2:54974372-54974391 Msa0077900:intron 60.0%
AGCCAAGGGGTGGCCTATGT+GGG - chr1_2:54974386-54974405 Msa0077900:intron 60.0%
! GGGGTTGCATTGGCCCACAT+AGG + chr1_2:54974402-54974421 None:intergenic 60.0%
GAGCTGGTCCCTGCTCTTGA+AGG + chr1_2:54975439-54975458 None:intergenic 60.0%
GATGCTCACAAGCCTCGGAC+AGG - chr1_2:54975526-54975545 Msa0077900:intron 60.0%
CACAAGCCTCGGACAGGTCA+TGG - chr1_2:54975532-54975551 Msa0077900:intron 60.0%
CTACTGCCATGACCTGTCCG+AGG + chr1_2:54975541-54975560 None:intergenic 60.0%
GGACGGGACATGTTCTGTGG+TGG - chr1_2:54976615-54976634 Msa0077900:intron 60.0%
CATCTCGAGGAACCCGACGG+AGG + chr1_2:54971969-54971988 None:intergenic 65.0%
AACAGCGCCATGGCTCACGG+CGG - chr1_2:54972043-54972062 Msa0077900:three_prime_UTR 65.0%
! GTGTCAACAAGCGCCGCGAG+AGG - chr1_2:54972068-54972087 Msa0077900:three_prime_UTR 65.0%
GGAGCATGCGTTCGGCGGAT+CGG + chr1_2:54972168-54972187 None:intergenic 65.0%
CGCCGAACGCATGCTCCGAA+AGG - chr1_2:54972171-54972190 Msa0077900:three_prime_UTR 65.0%
CAGGGCCATAGAACCAGGGG+TGG - chr1_2:54974363-54974382 Msa0077900:intron 65.0%
GAACCAGGGGTGGAGCCAAG+GGG - chr1_2:54974373-54974392 Msa0077900:intron 65.0%
GAGCCAAGGGGTGGCCTATG+TGG - chr1_2:54974385-54974404 Msa0077900:intron 65.0%
GGCCCACATAGGCCACCCCT+TGG + chr1_2:54974391-54974410 None:intergenic 70.0%
AGCGCCATGGCTCACGGCGG+CGG - chr1_2:54972046-54972065 Msa0077900:three_prime_UTR 75.0%
GACACCGCCGCCGTGAGCCA+TGG + chr1_2:54972053-54972072 None:intergenic 75.0%
CGGCGGGGTTGACCCTCTCG+CGG + chr1_2:54972084-54972103 None:intergenic 75.0%
CCACCCCTTGGCTCCACCCC+TGG + chr1_2:54974379-54974398 None:intergenic 75.0%
CCAGGGGTGGAGCCAAGGGG+TGG - chr1_2:54974376-54974395 Msa0077900:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54971958 54977040 54971958 ID=Msa0077900;Name=Msa0077900
chr1_2 mRNA 54971958 54977040 54971958 ID=Msa0077900-mRNA-1;Parent=Msa0077900;Name=Msa0077900-mRNA-1;_AED=0.13;_eAED=0.13;_QI=94|0.57|0.75|0.87|0.71|0.75|8|366|410
chr1_2 exon 54971958 54972469 54971958 ID=Msa0077900-mRNA-1:exon:17127;Parent=Msa0077900-mRNA-1
chr1_2 exon 54972535 54972682 54972535 ID=Msa0077900-mRNA-1:exon:17126;Parent=Msa0077900-mRNA-1
chr1_2 exon 54973371 54973766 54973371 ID=Msa0077900-mRNA-1:exon:17125;Parent=Msa0077900-mRNA-1
chr1_2 exon 54973885 54973948 54973885 ID=Msa0077900-mRNA-1:exon:17124;Parent=Msa0077900-mRNA-1
chr1_2 exon 54974048 54974162 54974048 ID=Msa0077900-mRNA-1:exon:17123;Parent=Msa0077900-mRNA-1
chr1_2 exon 54975087 54975225 54975087 ID=Msa0077900-mRNA-1:exon:17122;Parent=Msa0077900-mRNA-1
chr1_2 exon 54976649 54976732 54976649 ID=Msa0077900-mRNA-1:exon:17121;Parent=Msa0077900-mRNA-1
chr1_2 exon 54976806 54977040 54976806 ID=Msa0077900-mRNA-1:exon:17120;Parent=Msa0077900-mRNA-1
chr1_2 five_prime_UTR 54976947 54977040 54976947 ID=Msa0077900-mRNA-1:five_prime_utr;Parent=Msa0077900-mRNA-1
chr1_2 CDS 54976806 54976946 54976806 ID=Msa0077900-mRNA-1:cds;Parent=Msa0077900-mRNA-1
chr1_2 CDS 54976649 54976732 54976649 ID=Msa0077900-mRNA-1:cds;Parent=Msa0077900-mRNA-1
chr1_2 CDS 54975087 54975225 54975087 ID=Msa0077900-mRNA-1:cds;Parent=Msa0077900-mRNA-1
chr1_2 CDS 54974048 54974162 54974048 ID=Msa0077900-mRNA-1:cds;Parent=Msa0077900-mRNA-1
chr1_2 CDS 54973885 54973948 54973885 ID=Msa0077900-mRNA-1:cds;Parent=Msa0077900-mRNA-1
chr1_2 CDS 54973371 54973766 54973371 ID=Msa0077900-mRNA-1:cds;Parent=Msa0077900-mRNA-1
chr1_2 CDS 54972535 54972682 54972535 ID=Msa0077900-mRNA-1:cds;Parent=Msa0077900-mRNA-1
chr1_2 CDS 54972324 54972469 54972324 ID=Msa0077900-mRNA-1:cds;Parent=Msa0077900-mRNA-1
chr1_2 three_prime_UTR 54971958 54972323 54971958 ID=Msa0077900-mRNA-1:three_prime_utr;Parent=Msa0077900-mRNA-1
Gene Sequence

>Msa0077900

ATGGCTCACGGCGGCGGTGTCAACAAGCGCCGCGAGAGGGTCAACCCCGCCGCAAACCGTAGAAAAACCACCGCCAAGAAATTCAAACCACCCGTTTCTCTCAAAAACCAAATCCGATCCGCCGAACGCATGCTCCGAAAGAATTTACCAGCGGAGGTTAGAGAAGCACAGGTGCAGAAACTGGAAGCACTGAAGAAACAGCAGGATATTCACACTCGCCTCGCTTACTTTCCCAAGAATGAGAAATATGTTCCTTTATTTAGTGGAACTGATGATGCGGAGATAGTTGACAAGCGAAATGGGCTGCGCAAACAGATTGAAGAGAGGTTATCTGTGGCTGCTGCAACTGGCAAGGATTTAGAAGAGACTGGCAGTGAGGATGACGGTCTTCTGGATCTCAGTGATGATGATTTTTTTCTTCCTGGAAGTTCTAGTGATGAAGCTGACGCAGATGATGAATTGACAGACAAAAGTACCAGAGAGCAGGCTTCTAGTGCTTCTGGAAAAGCTGTGTCTGGCATGTCCAGCGATGAAAAAAATCAGAGGCAGATTTCTGCCAGAGCTTTGATGCCTCCTCCTCGCCCTTCAAACAAGTTGTCAAGGTTTGGGTCTGCAGGCCAAAATTCATCTAAACAGAGATCTGATATTTCTACATCCCGCTACGCATCAAACAGCAAAAGCAGCTCAGACTTCAGAGTAAGGGAACCCTCAAGATCAGGGACCAGCTCAGACTTCAGAGTAAGGGAACCTTCAAGAGCAGGGACCAGCTCAGACTTTAGAGTAAGGGAACCCTCAAGATCAGGGACCAGTCATGGTAGTAGTCTAAGCTCCAACTCTGATGCTCACAAGCCTCGGACAGGTCATGGCAGTAGTCTAAGCTCCAACTCTGATGCTCACAAGCCTCGGAGAAAGAGAAGACCTAAGAAGAAAAAGAAGCAGGATGATACAATATGTATTATGTATCAAACAGCGTGGGCTGCGCATCAATACTTACATGTTATACATGTTCCATCTGTTGTAGAGTTACTTTTGTCTTCAGTAGACTACTTAGGATCAGTTTATTTGTTCATCAAATGGAATACATCAAGAATGATGGATAAACTGGGCATTGCTATGGCCATTTGGATCAGCTTCTTCACATTCATTCAAGATTCTTACAATTACGTTTTAACTGGACGGGACATGTTCTGTGGTGGACCTGCAGGGAGCTTCTTTTACTGGTCATTGTTATGA

Protein sequence

>Msa0077900

MAHGGGVNKRRERVNPAANRRKTTAKKFKPPVSLKNQIRSAERMLRKNLPAEVREAQVQKLEALKKQQDIHTRLAYFPKNEKYVPLFSGTDDAEIVDKRNGLRKQIEERLSVAAATGKDLEETGSEDDGLLDLSDDDFFLPGSSSDEADADDELTDKSTREQASSASGKAVSGMSSDEKNQRQISARALMPPPRPSNKLSRFGSAGQNSSKQRSDISTSRYASNSKSSSDFRVREPSRSGTSSDFRVREPSRAGTSSDFRVREPSRSGTSHGSSLSSNSDAHKPRTGHGSSLSSNSDAHKPRRKRRPKKKKKQDDTICIMYQTAWAAHQYLHVIHVPSVVELLLSSVDYLGSVYLFIKWNTSRMMDKLGIAMAIWISFFTFIQDSYNYVLTGRDMFCGGPAGSFFYWSLL*